AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05203

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05203.t1 MTR_7g005280 82.031 256 25 7 1 238 1 253 2.97e-136 383
MS.gene05203.t1 MTR_8g099750 60.465 172 57 3 1 162 1 171 2.12e-71 218
MS.gene05203.t1 MTR_3g098810 58.721 172 59 3 1 160 1 172 2.79e-66 205
MS.gene05203.t1 MTR_3g098810 56.287 167 66 3 1 160 1 167 1.12e-62 194
MS.gene05203.t1 MTR_4g089135 53.005 183 57 3 13 166 14 196 4.53e-57 185
MS.gene05203.t1 MTR_7g085220 46.078 204 85 4 11 197 5 200 6.14e-56 182
MS.gene05203.t1 MTR_7g070140 57.222 180 17 3 59 238 12 131 6.40e-56 175
MS.gene05203.t1 MTR_2g080010 52.660 188 64 5 14 176 15 202 7.83e-56 182
MS.gene05203.t1 MTR_4g081870 56.604 159 57 4 14 162 9 165 1.85e-54 176
MS.gene05203.t1 MTR_5g041940 55.696 158 58 3 12 159 1 156 1.89e-54 176
MS.gene05203.t1 MTR_3g088110 55.422 166 60 5 11 167 4 164 7.83e-53 172
MS.gene05203.t1 MTR_2157s0010 51.124 178 70 5 14 174 8 185 2.12e-52 171
MS.gene05203.t1 MTR_7g100990 46.597 191 91 4 9 189 6 195 2.42e-52 172
MS.gene05203.t1 MTR_2g064090 44.737 228 101 7 12 217 4 228 3.01e-52 172
MS.gene05203.t1 MTR_3g064580 58.333 156 54 5 12 158 4 157 9.33e-52 178
MS.gene05203.t1 MTR_1g008740 53.165 158 68 3 11 162 10 167 8.59e-51 169
MS.gene05203.t1 MTR_1g008740 53.165 158 68 3 11 162 24 181 9.84e-51 169
MS.gene05203.t1 MTR_4g036030 51.875 160 68 4 14 166 7 164 1.47e-50 168
MS.gene05203.t1 MTR_2g093810 52.632 152 62 2 14 155 14 165 2.85e-50 167
MS.gene05203.t1 MTR_2g078700 50.625 160 71 2 11 162 20 179 4.10e-50 168
MS.gene05203.t1 MTR_3g109340 51.282 156 72 2 11 162 19 174 5.20e-50 167
MS.gene05203.t1 MTR_4g035590 47.541 183 78 5 14 181 8 187 6.60e-50 167
MS.gene05203.t1 MTR_5g076850 44.595 222 93 9 12 218 4 210 7.40e-50 172
MS.gene05203.t1 MTR_3g109340 50.955 157 72 2 11 162 19 175 1.00e-49 166
MS.gene05203.t1 MTR_4g108760 46.154 195 87 7 1 182 1 190 2.77e-49 165
MS.gene05203.t1 MTR_8g094580 42.339 248 108 9 10 233 3 239 3.55e-49 163
MS.gene05203.t1 MTR_5g021710 48.521 169 78 4 11 172 5 171 4.05e-49 164
MS.gene05203.t1 MTR_7g070150 74.336 113 7 2 102 213 1 92 4.84e-49 156
MS.gene05203.t1 MTR_6g084430 44.019 209 100 5 11 215 2 197 6.17e-49 163
MS.gene05203.t1 MTR_5g012080 47.826 161 75 3 14 166 7 166 7.71e-49 164
MS.gene05203.t1 MTR_1g069805 42.365 203 108 4 14 208 10 211 1.49e-48 161
MS.gene05203.t1 MTR_2g062730 49.682 157 71 3 10 159 6 161 1.56e-48 163
MS.gene05203.t1 MTR_8g467490 38.400 250 136 4 1 235 1 247 2.11e-48 164
MS.gene05203.t1 MTR_2g079990 54.839 155 62 3 10 158 12 164 2.61e-48 162
MS.gene05203.t1 MTR_6g477900 49.697 165 72 4 12 168 4 165 7.79e-48 158
MS.gene05203.t1 MTR_4g101680 51.299 154 66 3 13 159 6 157 1.06e-47 161
MS.gene05203.t1 MTR_1g096430 50.323 155 68 3 11 158 4 156 1.69e-47 160
MS.gene05203.t1 MTR_3g435150 50.000 160 70 3 11 162 13 170 1.89e-47 159
MS.gene05203.t1 MTR_8g076110 50.641 156 68 4 11 159 3 156 2.39e-47 159
MS.gene05203.t1 MTR_3g096920 52.830 159 63 3 10 159 3 158 5.51e-47 157
MS.gene05203.t1 MTR_3g070030 50.000 162 70 5 7 159 12 171 8.79e-47 159
MS.gene05203.t1 MTR_8g059170 54.487 156 61 4 11 158 11 164 1.22e-46 157
MS.gene05203.t1 MTR_6g012670 49.045 157 70 4 14 162 20 174 1.98e-46 157
MS.gene05203.t1 MTR_6g032770 47.097 155 74 2 12 158 16 170 2.20e-46 158
MS.gene05203.t1 MTR_7g085260 49.123 171 74 5 1 158 1 171 5.31e-46 157
MS.gene05203.t1 MTR_2g079990 57.246 138 54 2 10 144 12 147 9.93e-46 157
MS.gene05203.t1 MTR_8g024480 44.318 176 78 3 2 159 3 176 1.23e-45 157
MS.gene05203.t1 MTR_7g097090 50.685 146 68 2 14 156 10 154 2.20e-45 153
MS.gene05203.t1 MTR_2g064470 44.103 195 84 7 4 188 1 180 2.33e-45 154
MS.gene05203.t1 MTR_5g040420 45.198 177 83 2 1 163 1 177 4.87e-45 155
MS.gene05203.t1 MTR_5g014300 43.333 180 92 2 10 179 2 181 6.96e-45 153
MS.gene05203.t1 MTR_5g090970 50.000 164 66 5 8 156 13 175 1.49e-44 152
MS.gene05203.t1 MTR_3g116070 52.083 144 65 3 8 147 17 160 1.63e-44 152
MS.gene05203.t1 MTR_3g096920 57.463 134 51 2 10 140 3 133 2.58e-44 152
MS.gene05203.t1 MTR_7g011130 40.000 215 101 5 7 200 12 219 2.77e-44 152
MS.gene05203.t1 MTR_5g090970 49.697 165 66 5 8 156 13 176 4.03e-44 150
MS.gene05203.t1 MTR_2g068880 42.408 191 85 5 6 175 13 199 9.30e-44 150
MS.gene05203.t1 MTR_4g098630 53.030 132 56 2 14 139 6 137 1.26e-43 149
MS.gene05203.t1 MTR_7g011120 46.784 171 74 5 7 162 1 169 2.87e-43 148
MS.gene05203.t1 MTR_3g093040 47.097 155 72 3 12 158 106 258 1.68e-42 146
MS.gene05203.t1 MTR_6g011860 47.500 160 68 4 14 158 15 173 8.19e-42 146
MS.gene05203.t1 MTR_2g068920 45.251 179 76 5 1 159 9 185 1.42e-41 143
MS.gene05203.t1 MTR_5g069030 50.323 155 67 3 13 159 24 176 1.61e-41 149
MS.gene05203.t1 MTR_3g070040 44.578 166 77 3 7 162 1 161 2.00e-41 144
MS.gene05203.t1 MTR_3g093050 48.366 153 69 3 14 158 22 172 1.32e-40 147
MS.gene05203.t1 MTR_3g093050 48.366 153 69 3 14 158 22 172 1.89e-40 146
MS.gene05203.t1 MTR_1g097300 47.561 164 70 5 16 168 21 179 4.68e-40 145
MS.gene05203.t1 MTR_3g096140 43.017 179 74 6 16 183 9 170 1.07e-39 138
MS.gene05203.t1 MTR_3g096140 41.237 194 86 6 16 198 9 185 7.77e-39 138
MS.gene05203.t1 MTR_1g090720 49.102 167 67 4 14 165 42 205 1.63e-38 139
MS.gene05203.t1 MTR_1g090723 43.503 177 89 4 16 183 10 184 1.10e-37 139
MS.gene05203.t1 MTR_0036s0150 45.963 161 77 4 16 168 7 165 1.12e-37 138
MS.gene05203.t1 MTR_2g086880 49.219 128 59 2 16 139 20 145 2.36e-37 137
MS.gene05203.t1 MTR_1g090723 43.182 176 90 4 16 183 10 183 2.49e-37 137
MS.gene05203.t1 MTR_1g090723 43.182 176 90 4 16 183 10 183 2.96e-37 138
MS.gene05203.t1 MTR_2g086880 50.400 125 56 2 16 136 20 142 3.33e-37 137
MS.gene05203.t1 MTR_8g023840 46.309 149 71 4 14 156 11 156 4.04e-36 132
MS.gene05203.t1 MTR_4g134460 53.968 126 54 2 16 138 56 180 4.14e-36 132
MS.gene05203.t1 MTR_8g063550 42.771 166 81 4 13 168 5 166 8.40e-36 129
MS.gene05203.t1 MTR_8g063550 42.771 166 81 4 13 168 5 166 1.61e-35 130
MS.gene05203.t1 MTR_8g063550 42.771 166 81 4 13 168 5 166 2.25e-35 130
MS.gene05203.t1 MTR_4g075980 43.210 162 84 5 1 158 4 161 1.06e-34 125
MS.gene05203.t1 MTR_8g093580 42.945 163 79 4 13 165 5 163 5.57e-34 127
MS.gene05203.t1 MTR_4g094302 44.094 127 62 2 14 138 11 130 9.49e-33 117
MS.gene05203.t1 MTR_4g094302 44.094 127 62 2 14 138 11 130 3.62e-32 116
MS.gene05203.t1 MTR_8g023860 40.667 150 80 4 13 156 11 157 3.43e-30 116
MS.gene05203.t1 MTR_3g096140 37.989 179 83 6 31 198 3 164 2.93e-29 112
MS.gene05203.t1 MTR_8g023930 45.736 129 63 3 14 136 24 151 1.02e-28 113
MS.gene05203.t1 MTR_8g023900 41.060 151 82 3 14 158 12 161 5.06e-28 111
MS.gene05203.t1 MTR_8g023900 46.032 126 61 3 17 136 196 320 1.73e-27 109
MS.gene05203.t1 MTR_4g052620 39.873 158 80 6 14 157 5 161 6.11e-28 107
MS.gene05203.t1 MTR_2g086690 40.252 159 77 6 15 157 5 161 1.30e-27 106
MS.gene05203.t1 MTR_8g094580 37.696 191 87 8 64 233 6 185 7.79e-26 101
MS.gene05203.t1 MTR_8g093790 40.132 152 69 6 12 160 8 140 2.23e-25 98.6
MS.gene05203.t1 MTR_8g023880 37.245 196 83 9 14 184 7 187 2.16e-24 98.2
MS.gene05203.t1 MTR_7g105170 32.143 224 122 10 14 215 4 219 1.34e-23 95.9
MS.gene05203.t1 MTR_7g083370 33.099 142 86 5 7 143 3 140 1.40e-19 82.4
MS.gene05203.t1 MTR_5g061450 84.127 63 8 2 157 218 14 75 2.34e-19 80.1
MS.gene05203.t1 MTR_7g083360 31.613 155 97 5 7 156 3 153 6.39e-19 80.9
MS.gene05203.t1 MTR_7g083330 33.121 157 95 5 6 156 10 162 4.77e-18 79.7
MS.gene05203.t1 MTR_5g061420 84.127 63 8 2 157 218 14 75 6.05e-18 76.3
MS.gene05203.t1 MTR_3g096400 33.533 167 77 7 12 156 5 159 2.48e-17 77.8
MS.gene05203.t1 MTR_1g045470 34.028 144 82 5 22 154 13 154 6.39e-14 70.1
MS.gene05203.t1 MTR_4g078875 28.509 228 132 11 14 214 48 271 1.75e-12 65.9
MS.gene05203.t1 MTR_2g014680 32.653 147 71 8 14 138 53 193 1.39e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05203.t1 AT5G13180 71.257 167 46 1 1 165 1 167 1.67e-88 262
MS.gene05203.t1 AT2G33480 70.909 165 44 3 1 163 1 163 1.44e-82 248
MS.gene05203.t1 AT2G33480 70.060 167 44 3 1 163 1 165 2.90e-82 247
MS.gene05203.t1 AT1G61110 55.056 178 59 5 1 158 1 177 1.46e-55 181
MS.gene05203.t1 AT3G04070 55.090 167 59 4 8 158 4 170 7.73e-55 179
MS.gene05203.t1 AT1G69490 55.152 165 62 3 14 168 9 171 1.20e-54 176
MS.gene05203.t1 AT1G65910 43.913 230 113 5 12 233 4 225 1.38e-54 185
MS.gene05203.t1 AT1G77450 46.445 211 99 4 10 210 6 212 8.92e-54 174
MS.gene05203.t1 AT3G04070 59.859 142 51 2 8 143 4 145 2.49e-53 176
MS.gene05203.t1 AT3G15510 56.329 158 52 3 18 158 21 178 3.03e-52 173
MS.gene05203.t1 AT5G17260 49.711 173 76 3 12 175 4 174 2.50e-51 173
MS.gene05203.t1 AT3G03200 42.793 222 109 5 12 218 4 222 3.74e-51 173
MS.gene05203.t1 AT2G24430 53.846 156 67 2 8 158 10 165 5.72e-51 168
MS.gene05203.t1 AT2G24430 53.846 156 67 2 8 158 10 165 5.72e-51 168
MS.gene05203.t1 AT5G61430 53.125 160 65 5 11 162 13 170 6.40e-51 169
MS.gene05203.t1 AT5G07680 51.875 160 67 4 11 162 14 171 6.95e-51 169
MS.gene05203.t1 AT1G33280 51.974 152 65 2 14 159 8 157 8.64e-51 167
MS.gene05203.t1 AT5G39610 44.651 215 90 6 12 205 18 224 9.25e-51 167
MS.gene05203.t1 AT5G07680 52.866 157 64 4 14 162 3 157 1.03e-50 168
MS.gene05203.t1 AT5G53950 49.189 185 83 4 14 187 17 201 1.31e-50 169
MS.gene05203.t1 AT4G27410 53.503 157 65 3 11 161 11 165 1.73e-50 167
MS.gene05203.t1 AT1G54330 56.494 154 56 3 12 158 4 153 2.14e-50 166
MS.gene05203.t1 AT1G12260 51.875 160 67 5 14 166 7 163 2.47e-50 167
MS.gene05203.t1 AT1G62700 51.553 161 69 4 13 166 6 164 2.94e-50 169
MS.gene05203.t1 AT1G62700 51.553 161 69 4 13 166 6 164 2.94e-50 169
MS.gene05203.t1 AT4G10350 52.121 165 66 5 4 159 1 161 4.78e-50 167
MS.gene05203.t1 AT3G15170 49.697 165 73 4 11 167 17 179 7.19e-50 166
MS.gene05203.t1 AT1G12260 51.875 160 67 5 14 166 7 163 7.28e-50 168
MS.gene05203.t1 AT3G18400 53.595 153 64 4 11 158 2 152 1.92e-49 164
MS.gene05203.t1 AT2G18060 41.880 234 117 7 14 237 9 233 1.98e-49 166
MS.gene05203.t1 AT2G18060 41.880 234 117 7 14 237 9 233 1.98e-49 166
MS.gene05203.t1 AT1G01720 54.545 165 60 5 12 166 5 164 2.75e-49 163
MS.gene05203.t1 AT5G46590 50.633 158 68 3 10 158 2 158 4.39e-49 163
MS.gene05203.t1 AT5G66300 50.909 165 69 5 4 159 2 163 2.25e-48 161
MS.gene05203.t1 AT1G76420 51.948 154 67 3 11 158 19 171 2.62e-48 162
MS.gene05203.t1 AT3G12977 47.059 187 87 7 11 189 15 197 3.93e-48 160
MS.gene05203.t1 AT5G62380 53.205 156 62 5 12 159 5 157 4.45e-48 162
MS.gene05203.t1 AT5G62380 53.205 156 62 5 12 159 5 157 4.45e-48 162
MS.gene05203.t1 AT5G18270 51.613 155 66 3 12 158 19 172 5.39e-48 161
MS.gene05203.t1 AT3G04060 52.903 155 64 4 12 158 18 171 6.44e-48 161
MS.gene05203.t1 AT3G17730 50.323 155 67 3 12 158 4 156 6.60e-48 158
MS.gene05203.t1 AT4G27410 48.276 174 65 3 11 161 11 182 7.15e-48 160
MS.gene05203.t1 AT5G18270 51.613 155 66 3 12 158 19 172 1.23e-47 160
MS.gene05203.t1 AT5G63790 46.734 199 82 6 10 195 46 233 1.92e-47 159
MS.gene05203.t1 AT5G63790 46.734 199 82 6 10 195 56 243 2.27e-47 159
MS.gene05203.t1 AT5G46590 50.345 145 66 2 10 149 2 145 2.27e-47 158
MS.gene05203.t1 AT1G52890 52.258 155 66 3 11 159 11 163 2.67e-47 159
MS.gene05203.t1 AT4G36160 46.591 176 83 4 1 167 1 174 4.73e-47 160
MS.gene05203.t1 AT1G33060 52.288 153 63 3 14 158 24 174 5.84e-47 165
MS.gene05203.t1 AT1G71930 49.342 152 68 3 14 158 9 158 5.91e-47 158
MS.gene05203.t1 AT1G71930 49.342 152 68 3 14 158 9 158 5.91e-47 158
MS.gene05203.t1 AT1G33060 52.288 153 63 3 14 158 24 174 6.47e-47 164
MS.gene05203.t1 AT4G36160 49.080 163 72 4 14 167 10 170 6.99e-47 159
MS.gene05203.t1 AT4G36160 49.080 163 72 4 14 167 10 170 6.99e-47 159
MS.gene05203.t1 AT1G79580 49.682 157 70 3 10 159 13 167 9.26e-47 159
MS.gene05203.t1 AT1G79580 49.682 157 70 3 10 159 13 167 9.26e-47 159
MS.gene05203.t1 AT1G79580 49.682 157 70 3 10 159 13 167 9.26e-47 159
MS.gene05203.t1 AT1G79580 49.682 157 70 3 10 159 13 167 9.26e-47 159
MS.gene05203.t1 AT1G79580 49.682 157 70 3 10 159 13 167 9.26e-47 159
MS.gene05203.t1 AT1G52880 53.086 162 60 3 18 163 21 182 9.86e-47 157
MS.gene05203.t1 AT3G29035 47.191 178 82 4 11 180 21 194 1.67e-46 157
MS.gene05203.t1 AT4G35580 47.917 192 80 6 14 195 9 190 4.00e-46 160
MS.gene05203.t1 AT4G35580 46.073 191 86 4 14 196 9 190 4.12e-46 160
MS.gene05203.t1 AT4G35580 47.917 192 80 6 14 195 9 190 4.32e-46 160
MS.gene05203.t1 AT4G17980 51.111 135 61 1 10 139 2 136 4.46e-46 154
MS.gene05203.t1 AT1G56010 43.617 188 86 5 11 188 16 193 5.53e-46 156
MS.gene05203.t1 AT4G17980 51.111 135 61 1 10 139 2 136 5.62e-46 155
MS.gene05203.t1 AT3G61910 44.068 177 75 5 4 158 1 175 1.31e-45 155
MS.gene05203.t1 AT3G15500 51.613 155 67 3 11 159 11 163 1.56e-45 154
MS.gene05203.t1 AT1G32770 43.407 182 82 4 3 165 5 184 1.65e-45 155
MS.gene05203.t1 AT2G46770 44.944 178 74 4 4 159 6 181 2.15e-45 155
MS.gene05203.t1 AT5G08790 52.174 161 61 5 11 159 4 160 3.85e-45 152
MS.gene05203.t1 AT2G33480 67.619 105 29 2 59 160 3 105 4.10e-45 150
MS.gene05203.t1 AT3G10490 51.299 154 64 3 14 158 27 178 8.08e-45 150
MS.gene05203.t1 AT3G10480 51.266 158 66 3 14 162 27 182 9.10e-45 155
MS.gene05203.t1 AT3G10480 50.955 157 67 3 14 162 27 181 1.26e-43 152
MS.gene05203.t1 AT3G10500 48.466 163 74 3 14 168 9 169 2.52e-43 154
MS.gene05203.t1 AT5G04410 49.693 163 72 3 14 168 9 169 3.73e-43 153
MS.gene05203.t1 AT3G10490 50.633 158 67 3 14 162 27 182 5.12e-43 151
MS.gene05203.t1 AT1G34180 49.383 162 70 4 16 168 18 176 1.88e-42 149
MS.gene05203.t1 AT1G34190 49.693 163 68 5 16 168 18 176 3.33e-42 150
MS.gene05203.t1 AT5G39820 41.089 202 92 3 2 176 8 209 3.56e-42 146
MS.gene05203.t1 AT1G34180 49.383 162 70 4 16 168 18 176 9.14e-42 149
MS.gene05203.t1 AT4G28530 44.068 177 79 4 7 164 3 178 1.06e-41 145
MS.gene05203.t1 AT1G34180 45.977 174 70 4 16 168 18 188 2.40e-41 147
MS.gene05203.t1 AT3G49530 37.778 225 122 5 14 221 13 236 3.76e-41 145
MS.gene05203.t1 AT1G26870 46.875 160 70 3 14 158 16 175 8.04e-41 144
MS.gene05203.t1 AT3G49530 37.778 225 122 5 14 221 13 236 1.03e-40 145
MS.gene05203.t1 AT1G34180 45.977 174 70 4 16 168 18 188 1.06e-40 147
MS.gene05203.t1 AT3G10480 42.408 191 66 3 14 162 27 215 2.75e-40 145
MS.gene05203.t1 AT1G32510 44.444 171 80 4 14 170 6 175 3.38e-40 140
MS.gene05203.t1 AT5G24590 44.199 181 81 5 14 179 13 188 1.19e-39 142
MS.gene05203.t1 AT2G17040 48.980 147 69 3 16 158 8 152 2.36e-39 137
MS.gene05203.t1 AT5G64060 42.188 192 89 4 10 193 2 179 6.46e-39 138
MS.gene05203.t1 AT2G02450 54.762 126 53 2 16 138 53 177 2.78e-38 137
MS.gene05203.t1 AT2G02450 54.762 126 53 2 16 138 53 177 3.48e-38 137
MS.gene05203.t1 AT2G43000 47.973 148 68 4 16 156 20 165 5.04e-38 134
MS.gene05203.t1 AT3G12910 45.963 161 67 5 16 156 23 183 1.85e-37 133
MS.gene05203.t1 AT5G09330 42.051 195 89 5 10 195 2 181 3.46e-36 133
MS.gene05203.t1 AT5G09330 42.051 195 89 5 10 195 2 181 3.46e-36 133
MS.gene05203.t1 AT5G09330 42.051 195 89 5 10 195 2 181 3.46e-36 133
MS.gene05203.t1 AT5G09330 42.051 195 89 5 10 195 2 181 3.46e-36 133
MS.gene05203.t1 AT5G09330 42.051 195 89 5 10 195 2 181 3.46e-36 133
MS.gene05203.t1 AT5G22290 39.779 181 96 5 16 191 23 195 1.62e-35 129
MS.gene05203.t1 AT2G27300 45.255 137 69 2 14 146 14 148 6.40e-35 127
MS.gene05203.t1 AT5G04395 43.836 146 65 2 11 139 25 170 1.36e-34 122
MS.gene05203.t1 AT3G44290 46.457 127 62 2 16 138 16 140 2.44e-34 123
MS.gene05203.t1 AT3G44290 44.444 135 69 2 16 146 16 148 2.78e-33 123
MS.gene05203.t1 AT4G10350 53.535 99 41 2 64 159 18 114 4.98e-32 119
MS.gene05203.t1 AT5G64530 45.736 129 57 3 12 138 1 118 1.45e-31 114
MS.gene05203.t1 AT1G32870 45.930 172 77 5 7 168 5 170 1.84e-31 121
MS.gene05203.t1 AT1G32870 45.930 172 77 5 7 168 5 170 2.25e-31 120
MS.gene05203.t1 AT1G32870 45.930 172 77 5 7 168 41 206 2.78e-31 120
MS.gene05203.t1 AT5G64530 45.736 129 57 3 12 138 1 118 3.91e-31 114
MS.gene05203.t1 AT5G14000 37.349 166 97 4 6 168 7 168 3.31e-30 112
MS.gene05203.t1 AT5G61430 52.885 104 42 3 64 162 6 107 3.38e-30 113
MS.gene05203.t1 AT3G12977 44.961 129 64 4 65 189 19 144 5.71e-29 109
MS.gene05203.t1 AT1G56010 44.094 127 55 3 68 188 10 126 7.70e-29 109
MS.gene05203.t1 AT5G14000 39.456 147 84 3 7 150 8 152 1.85e-28 105
MS.gene05203.t1 AT5G50820 41.259 143 76 4 5 144 7 144 9.54e-28 105
MS.gene05203.t1 AT1G02230 44.286 140 67 5 15 146 4 140 6.86e-27 106
MS.gene05203.t1 AT4G01550 34.946 186 102 5 17 195 7 180 2.39e-25 103
MS.gene05203.t1 AT4G01520 42.537 134 69 4 15 140 5 138 1.22e-24 99.8
MS.gene05203.t1 AT1G02250 43.571 140 68 4 15 146 4 140 1.36e-24 100
MS.gene05203.t1 AT4G01540 43.182 132 67 4 17 140 7 138 3.05e-24 99.8
MS.gene05203.t1 AT4G01540 43.182 132 67 4 17 140 7 138 3.48e-24 100
MS.gene05203.t1 AT4G01540 43.182 132 67 4 17 140 7 138 4.07e-24 99.8
MS.gene05203.t1 AT4G01540 43.182 132 67 4 17 140 7 138 5.20e-24 100
MS.gene05203.t1 AT3G44350 39.568 139 73 4 14 143 5 141 6.59e-23 91.7
MS.gene05203.t1 AT3G44350 37.419 155 82 5 17 158 8 160 7.29e-23 93.6
MS.gene05203.t1 AT3G04420 42.636 129 65 4 15 136 4 130 2.44e-22 93.2
MS.gene05203.t1 AT5G22380 37.821 156 80 5 17 157 8 161 3.03e-22 91.7
MS.gene05203.t1 AT3G04420 42.636 129 65 4 15 136 4 130 4.19e-22 93.2
MS.gene05203.t1 AT4G28530 38.519 135 64 3 7 122 3 137 3.59e-21 90.5
MS.gene05203.t1 AT2G18060 37.255 153 83 5 89 237 2 145 1.27e-20 88.2
MS.gene05203.t1 AT1G02220 40.000 135 57 6 15 136 4 127 4.07e-20 88.6
MS.gene05203.t1 AT3G10490 48.193 83 37 2 84 162 2 82 7.20e-18 81.6
MS.gene05203.t1 AT3G10490 48.193 83 37 2 84 162 2 82 7.20e-18 81.6
MS.gene05203.t1 AT2G43000 47.059 85 39 3 76 156 5 87 2.29e-16 75.1
MS.gene05203.t1 AT1G01010 36.567 134 68 5 17 136 6 136 1.11e-15 75.9
MS.gene05203.t1 AT3G55210 32.370 173 89 8 14 165 11 176 3.48e-15 73.6
MS.gene05203.t1 AT5G22290 39.806 103 53 4 90 191 2 96 2.14e-13 67.8
MS.gene05203.t1 AT3G56530 32.168 143 83 5 11 144 49 186 8.20e-13 67.0
MS.gene05203.t1 AT5G14000 53.571 56 26 0 6 61 7 62 9.10e-13 66.2
MS.gene05203.t1 AT4G29230 30.387 181 95 9 12 165 46 222 7.63e-12 64.7
MS.gene05203.t1 AT4G29230 30.387 181 95 9 12 165 46 222 1.02e-11 64.3
MS.gene05203.t1 AT4G29230 30.387 181 95 9 12 165 45 221 1.10e-11 64.3
MS.gene05203.t1 AT5G56620 31.210 157 75 7 12 138 41 194 1.47e-11 63.9
MS.gene05203.t1 AT5G56620 31.210 157 75 7 12 138 41 194 1.49e-11 63.9
MS.gene05203.t1 AT5G56620 31.210 157 75 7 12 138 41 194 1.64e-11 63.5
MS.gene05203.t1 AT1G28470 31.792 173 92 11 14 164 77 245 2.01e-11 63.2
MS.gene05203.t1 AT4G28500 29.834 181 101 8 14 171 59 236 3.77e-11 62.4
MS.gene05203.t1 AT5G41090 26.708 161 96 5 14 159 8 161 4.28e-11 60.8

Find 50 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACCCCTTGAATGAAAAT+TGG 0.154078 6.3:-71544030 MS.gene05203:CDS
CCAAGCAGTGGCAGCAGTTT+TGG 0.254576 6.3:-71543935 MS.gene05203:CDS
TTTACAGACCTAATAATAAA+AGG 0.264634 6.3:+71543751 None:intergenic
CTGTCAGATCGGTTCCCATT+TGG 0.351135 6.3:+71544226 None:intergenic
CTCTTCAATCACAAATGAAT+TGG 0.353557 6.3:-71543822 MS.gene05203:CDS
GAGGTACAAACTCTGGTTAC+TGG 0.358242 6.3:-71544204 MS.gene05203:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 6.3:-71544475 MS.gene05203:CDS
TCGGTTCCCATTTGGATACT+TGG 0.390108 6.3:+71544234 None:intergenic
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 6.3:-71544474 MS.gene05203:CDS
CAACCCCTTGAATGAAAATT+GGG 0.412467 6.3:-71544029 MS.gene05203:CDS
TCAAAGACTCATGAAGTTGT+TGG 0.413398 6.3:-71544148 MS.gene05203:CDS
AAAGAAGCCAAGTATCCAAA+TGG 0.440359 6.3:-71544241 MS.gene05203:CDS
ACTTCAGGAATGATGGAAAC+AGG 0.442694 6.3:+71544500 None:intergenic
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 6.3:-71544193 MS.gene05203:CDS
AAGATCAACTTCAGGAATGA+TGG 0.456137 6.3:+71544493 None:intergenic
CTCAGATTCAAGTTCAAAAG+TGG 0.459591 6.3:-71543897 MS.gene05203:CDS
TTACTGGAAAGCAACTGGTT+TGG 0.462280 6.3:-71544188 MS.gene05203:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 6.3:+71544560 None:intergenic
GACTTGCAAAGATCAACTTC+AGG 0.465462 6.3:+71544485 None:intergenic
CTTCATCTGTTGGATGGAAA+CGG 0.472612 6.3:+71544570 None:intergenic
CCAAAACTGCTGCCACTGCT+TGG 0.485586 6.3:+71543935 None:intergenic
TTCATTTGTGATTGAAGAGG+AGG 0.501069 6.3:+71543826 None:intergenic
CAAGTTCTTCATCTGTTGGA+TGG 0.505979 6.3:+71544564 None:intergenic
CAGACCTAATAATAAAAGGA+TGG 0.512205 6.3:+71543755 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 6.3:+71544047 None:intergenic
AAGAAGCCAAGTATCCAAAT+GGG 0.544681 6.3:-71544240 MS.gene05203:CDS
CAATTCATTTGTGATTGAAG+AGG 0.547382 6.3:+71543823 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 6.3:-71544087 MS.gene05203:CDS
TGTTCAATACTTGAAGCGTA+AGG 0.553435 6.3:-71544540 MS.gene05203:CDS
ATTCAAGGGGTTGGAGTGAG+AGG 0.553608 6.3:+71544039 None:intergenic
AGACCTAATAATAAAAGGAT+GGG 0.565706 6.3:+71543756 None:intergenic
TGTATCGCATATTTCTGAAG+AGG 0.567081 6.3:-71544003 MS.gene05203:CDS
AATCGAGAGGAGACAGTGAA+AGG 0.569341 6.3:-71543965 MS.gene05203:CDS
TCTGATCCTTGGGATTTACC+TGG 0.570788 6.3:-71544464 MS.gene05203:intron
TACAGAGGCAAACCACCTCA+TGG 0.581454 6.3:-71544103 MS.gene05203:CDS
GGAATGATGGAAACAGGTAA+AGG 0.582679 6.3:+71544506 None:intergenic
TCTGACAGAGGTACAAACTC+TGG 0.582841 6.3:-71544211 MS.gene05203:CDS
AGTTTGTACCTCTGTCAGAT+CGG 0.588797 6.3:+71544215 None:intergenic
GTTGGATGGAAACGGAAACC+TGG 0.589751 6.3:+71544578 None:intergenic
CGCATATTTCTGAAGAGGAG+AGG 0.600967 6.3:-71543998 MS.gene05203:CDS
AAAGGAGTGAAGCCAAGCAG+TGG 0.603258 6.3:-71543947 MS.gene05203:CDS
TCAGTTCTTGAACCATGAGG+TGG 0.615010 6.3:+71544091 None:intergenic
TACATACCAGGTAAATCCCA+AGG 0.624010 6.3:+71544458 None:intergenic
GGTGAAGTTAGATTGCCACC+AGG 0.651695 6.3:-71544596 MS.gene05203:CDS
AGGTGGTGCTATAAATCGAG+AGG 0.661415 6.3:-71543978 MS.gene05203:CDS
TAGGTGATATGGAACAAGAG+AGG 0.664397 6.3:-71544279 MS.gene05203:CDS
ATATTTCTGAAGAGGAGAGG+TGG 0.674268 6.3:-71543995 MS.gene05203:CDS
CAATCAGTTCTTGAACCATG+AGG 0.707588 6.3:+71544088 None:intergenic
AATGGGAACCGATCTGACAG+AGG 0.720450 6.3:-71544223 MS.gene05203:CDS
GGATGGAAACGGAAACCTGG+TGG 0.781347 6.3:+71544581 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATGAACGAAAAAGAAAAGAA+AGG + chr6.3:71543952-71543971 None:intergenic 25.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6.3:71543766-71543785 MS.gene05203:CDS 25.0%
CAATTCATTTGTGATTGAAG+AGG + chr6.3:71544563-71544582 None:intergenic 30.0%
CTCTTCAATCACAAATGAAT+TGG - chr6.3:71544561-71544580 MS.gene05203:CDS 30.0%
TAGAAGAAGTTATCATGTTC+CGG + chr6.3:71544035-71544054 None:intergenic 30.0%
! AGAACCCAATTTTCATTCAA+GGG + chr6.3:71544361-71544380 None:intergenic 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6.3:71544265-71544284 MS.gene05203:CDS 30.0%
AAAGAAGCCAAGTATCCAAA+TGG - chr6.3:71544142-71544161 MS.gene05203:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG - chr6.3:71544143-71544162 MS.gene05203:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr6.3:71543893-71543912 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG + chr6.3:71543826-71543845 None:intergenic 35.0%
CAACCCCTTGAATGAAAATT+GGG - chr6.3:71544354-71544373 MS.gene05203:intron 35.0%
GAAAAGAAAGGTTACATACC+AGG + chr6.3:71543940-71543959 None:intergenic 35.0%
TCAAAGACTCATGAAGTTGT+TGG - chr6.3:71544235-71544254 MS.gene05203:CDS 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr6.3:71543843-71543862 MS.gene05203:CDS 35.0%
TTCATTTGTGATTGAAGAGG+AGG + chr6.3:71544560-71544579 None:intergenic 35.0%
! CAGAACCCAATTTTCATTCA+AGG + chr6.3:71544362-71544381 None:intergenic 35.0%
! CTCAGATTCAAGTTCAAAAG+TGG - chr6.3:71544486-71544505 MS.gene05203:CDS 35.0%
! GAACCCAATTTTCATTCAAG+GGG + chr6.3:71544360-71544379 None:intergenic 35.0%
! TGTATCGCATATTTCTGAAG+AGG - chr6.3:71544380-71544399 MS.gene05203:intron 35.0%
!! TGGTGTTCTTTTAGGTGATA+TGG - chr6.3:71544093-71544112 MS.gene05203:CDS 35.0%
AGTTTGTACCTCTGTCAGAT+CGG + chr6.3:71544171-71544190 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr6.3:71543908-71543927 MS.gene05203:CDS 40.0%
CAAGTTCTTCATCTGTTGGA+TGG + chr6.3:71543822-71543841 None:intergenic 40.0%
CAATCAGTTCTTGAACCATG+AGG + chr6.3:71544298-71544317 None:intergenic 40.0%
CCAACCCCTTGAATGAAAAT+TGG - chr6.3:71544353-71544372 MS.gene05203:intron 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6.3:71544055-71544074 MS.gene05203:CDS 40.0%
CTCATGGTTCAAGAACTGAT+TGG - chr6.3:71544296-71544315 MS.gene05203:intron 40.0%
CTTCATCTGTTGGATGGAAA+CGG + chr6.3:71543816-71543835 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr6.3:71543901-71543920 None:intergenic 40.0%
TACATACCAGGTAAATCCCA+AGG + chr6.3:71543928-71543947 None:intergenic 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr6.3:71544104-71544123 MS.gene05203:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr6.3:71543909-71543928 MS.gene05203:CDS 40.0%
TTACTGGAAAGCAACTGGTT+TGG - chr6.3:71544195-71544214 MS.gene05203:CDS 40.0%
! ACTTCAGGAATGATGGAAAC+AGG + chr6.3:71543886-71543905 None:intergenic 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG - chr6.3:71544388-71544407 MS.gene05203:intron 40.0%
! CCAATTTTCATTCAAGGGGT+TGG + chr6.3:71544356-71544375 None:intergenic 40.0%
! GGAATGATGGAAACAGGTAA+AGG + chr6.3:71543880-71543899 None:intergenic 40.0%
AATCGAGAGGAGACAGTGAA+AGG - chr6.3:71544418-71544437 MS.gene05203:intron 45.0%
ACACTGACACATTCGAACAC+CGG - chr6.3:71544013-71544032 MS.gene05203:CDS 45.0%
GAGGTACAAACTCTGGTTAC+TGG - chr6.3:71544179-71544198 MS.gene05203:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG + chr6.3:71544295-71544314 None:intergenic 45.0%
TCGGTTCCCATTTGGATACT+TGG + chr6.3:71544152-71544171 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr6.3:71543919-71543938 MS.gene05203:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6.3:71544190-71544209 MS.gene05203:CDS 45.0%
! CGCATATTTCTGAAGAGGAG+AGG - chr6.3:71544385-71544404 MS.gene05203:intron 45.0%
! TCTGACAGAGGTACAAACTC+TGG - chr6.3:71544172-71544191 MS.gene05203:CDS 45.0%
! TGAGCGTGTGGTGTTCTTTT+AGG - chr6.3:71544085-71544104 MS.gene05203:CDS 45.0%
!! AGGTGGTGCTATAAATCGAG+AGG - chr6.3:71544405-71544424 MS.gene05203:intron 45.0%
!! TGTGGATTGATTTGAGCGTG+TGG - chr6.3:71544073-71544092 MS.gene05203:CDS 45.0%
AAAGGAGTGAAGCCAAGCAG+TGG - chr6.3:71544436-71544455 MS.gene05203:intron 50.0%
AATGGGAACCGATCTGACAG+AGG - chr6.3:71544160-71544179 MS.gene05203:CDS 50.0%
ATTCAAGGGGTTGGAGTGAG+AGG + chr6.3:71544347-71544366 None:intergenic 50.0%
GAAGCAGACACGACACAACA+TGG - chr6.3:71543990-71544009 MS.gene05203:CDS 50.0%
GGTGAAGTTAGATTGCCACC+AGG - chr6.3:71543787-71543806 MS.gene05203:CDS 50.0%
GTTGGATGGAAACGGAAACC+TGG + chr6.3:71543808-71543827 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG - chr6.3:71544280-71544299 MS.gene05203:intron 50.0%
! CTGTCAGATCGGTTCCCATT+TGG + chr6.3:71544160-71544179 None:intergenic 50.0%
CCAAAACTGCTGCCACTGCT+TGG + chr6.3:71544451-71544470 None:intergenic 55.0%
GGATGGAAACGGAAACCTGG+TGG + chr6.3:71543805-71543824 None:intergenic 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6.3:71544339-71544358 None:intergenic 55.0%
! CCAAGCAGTGGCAGCAGTTT+TGG - chr6.3:71544448-71544467 MS.gene05203:intron 55.0%
!! CAGTGGCAGCAGTTTTGGTG+AGG - chr6.3:71544453-71544472 MS.gene05203:intron 55.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 71543760 71544645 71543760 ID=MS.gene05203
chr6.3 mRNA 71543760 71544645 71543760 ID=MS.gene05203.t1;Parent=MS.gene05203
chr6.3 exon 71544465 71544645 71544465 ID=MS.gene05203.t1.exon1;Parent=MS.gene05203.t1
chr6.3 CDS 71544465 71544645 71544465 ID=cds.MS.gene05203.t1;Parent=MS.gene05203.t1
chr6.3 exon 71543760 71544298 71543760 ID=MS.gene05203.t1.exon2;Parent=MS.gene05203.t1
chr6.3 CDS 71543760 71544298 71543760 ID=cds.MS.gene05203.t1;Parent=MS.gene05203.t1
Gene Sequence

>MS.gene05203

ATGGAGAAGATGAATTTTGTGAAGAATGGTGAAGTTAGATTGCCACCAGGTTTCCGTTTCCATCCAACAGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTATTCTCTTTTCCTTTACCTGTTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGTAACCTTTCTTTTCTTTTTCGTTCATTTATAATCATAACTTAATGAAGCAGACACGACACAACATGGACACTGACACATTCGAACACCGGAACATGATAACTTCTTCTACTACTGCAAACAATGTCATGTGGATTGATTTGAGCGTGTGGTGTTCTTTTAGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACAAAAGAAGCCAAGTATCCAAATGGGAACCGATCTGACAGAGGTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACAAATCATGAATTCAAAGACTCATGAAGTTGTTGGCATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTGTATCGCATATTTCTGAAGAGGAGAGGTGGTGCTATAAATCGAGAGGAGACAGTGAAAGGAGTGAAGCCAAGCAGTGGCAGCAGTTTTGGTGAGGTGAAGAAGAACTCAGATTCAAGTTCAAAAGTGGTTGTTTTCTACGATTTCTTCGCAGAGAAGAAGAACAATTCTGATGCATCCTCCTCTTCAATCACAAATGAATTGGCTGAACATGAAAATGAAGACAGCAGTAACTCATTCACAGTGCTCCCATCCTTTTATTATTAG
Protein sequence

>MS.gene05203.t1

MEKMNFVKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPVSIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSDRGTNSGYWKATGLDKQIMNSKTHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLYRIFLKRRGGAINREETVKGVKPSSGSSFGEVKKNSDSSSKVVVFYDFFAEKKNNSDASSSSITNELAEHENEDSSNSFTVLPSFYY