AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052043

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052043.t1 MTR_1g008290 35.915 142 78 4 68 201 8 144 4.20e-21 90.5
MS.gene052043.t1 MTR_3g006370 32.335 167 99 4 9 168 45 204 6.26e-19 86.7
MS.gene052043.t1 MTR_0402s0040 34.848 132 79 4 7 133 21 150 3.71e-15 79.0
MS.gene052043.t1 MTR_2g098880 36.634 101 59 1 18 113 65 165 3.52e-14 73.6
MS.gene052043.t1 MTR_2g098880 36.634 101 59 1 18 113 77 177 4.30e-14 73.6
MS.gene052043.t1 MTR_5g032260 41.975 81 41 2 49 124 302 381 2.56e-13 72.8
MS.gene052043.t1 MTR_6g022070 24.878 205 139 3 224 418 4 203 1.29e-12 70.1
MS.gene052043.t1 MTR_6g051425 24.336 226 149 6 21 228 24 245 2.24e-12 69.3
MS.gene052043.t1 MTR_5g015480 27.830 212 136 6 14 214 56 261 1.32e-11 65.9
MS.gene052043.t1 MTR_2g070590 33.636 110 67 3 7 112 12 119 2.77e-11 61.6
MS.gene052043.t1 MTR_4g067290 33.036 112 69 3 10 117 52 161 6.24e-11 63.5
MS.gene052043.t1 MTR_4g067290 33.036 112 69 3 10 117 52 161 6.25e-11 63.5
MS.gene052043.t1 MTR_4g067290 33.036 112 69 3 10 117 72 181 6.42e-11 63.9
MS.gene052043.t1 MTR_4g067290 33.036 112 69 3 10 117 112 221 6.62e-11 64.3
MS.gene052043.t1 MTR_4g067290 33.036 112 69 3 10 117 70 179 7.13e-11 63.5
MS.gene052043.t1 MTR_4g067290 33.036 112 69 3 10 117 72 181 7.16e-11 63.5
MS.gene052043.t1 MTR_0856s0010 30.172 116 79 2 13 127 33 147 8.68e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052043.t1 AT4G15090 42.994 628 259 10 13 546 50 672 3.22e-168 503
MS.gene052043.t1 AT4G15090 42.994 628 259 10 13 546 50 672 3.22e-168 503
MS.gene052043.t1 AT4G15090 42.994 628 259 10 13 546 50 672 3.22e-168 503
MS.gene052043.t1 AT4G15090 42.994 628 259 10 13 546 50 672 3.22e-168 503
MS.gene052043.t1 AT4G15090 42.994 628 259 10 13 546 50 672 3.22e-168 503
MS.gene052043.t1 AT1G76320 55.860 401 168 5 228 620 290 689 6.21e-152 458
MS.gene052043.t1 AT1G76320 71.226 212 60 1 18 228 1 212 2.66e-100 323
MS.gene052043.t1 AT1G76320 55.860 401 168 5 228 620 290 689 6.21e-152 458
MS.gene052043.t1 AT1G76320 71.226 212 60 1 18 228 1 212 2.66e-100 323
MS.gene052043.t1 AT1G76320 56.000 400 167 5 228 620 290 687 8.53e-152 457
MS.gene052043.t1 AT1G76320 71.226 212 60 1 18 228 1 212 2.71e-100 323
MS.gene052043.t1 AT1G76320 56.218 386 154 3 228 609 290 664 3.75e-151 454
MS.gene052043.t1 AT1G76320 71.226 212 60 1 18 228 1 212 5.83e-101 323
MS.gene052043.t1 AT3G22170 49.689 322 160 2 223 543 357 677 1.53e-107 345
MS.gene052043.t1 AT3G22170 43.534 232 99 3 13 228 69 284 1.55e-50 189
MS.gene052043.t1 AT3G22170 49.689 322 160 2 223 543 357 677 1.53e-107 345
MS.gene052043.t1 AT3G22170 43.534 232 99 3 13 228 69 284 1.55e-50 189
MS.gene052043.t1 AT4G19990 48.012 327 166 3 224 546 240 566 2.40e-90 296
MS.gene052043.t1 AT4G19990 41.667 192 65 5 54 228 4 165 3.50e-29 124
MS.gene052043.t1 AT4G19990 48.012 327 166 3 224 546 297 623 3.94e-90 297
MS.gene052043.t1 AT4G19990 44.493 227 79 5 19 228 26 222 7.80e-42 163
MS.gene052043.t1 AT4G19990 48.012 327 166 3 224 546 297 623 3.94e-90 297
MS.gene052043.t1 AT4G19990 44.493 227 79 5 19 228 26 222 7.80e-42 163
MS.gene052043.t1 AT4G19990 48.012 327 166 3 224 546 297 623 4.76e-90 298
MS.gene052043.t1 AT4G19990 44.493 227 79 5 19 228 26 222 1.20e-41 162
MS.gene052043.t1 AT4G19990 48.012 327 166 3 224 546 297 623 4.76e-90 298
MS.gene052043.t1 AT4G19990 44.493 227 79 5 19 228 26 222 1.20e-41 162
MS.gene052043.t1 AT4G19990 48.012 327 166 3 224 546 297 623 5.32e-90 297
MS.gene052043.t1 AT4G19990 44.493 227 79 5 19 228 26 222 8.19e-42 163
MS.gene052043.t1 AT4G19990 48.012 327 166 3 224 546 311 637 7.07e-90 297
MS.gene052043.t1 AT4G19990 44.493 227 79 5 19 228 40 236 7.31e-42 163
MS.gene052043.t1 AT2G32250 42.188 320 184 1 225 543 253 572 1.40e-82 277
MS.gene052043.t1 AT2G32250 44.076 211 85 3 18 228 1 178 6.00e-42 163
MS.gene052043.t1 AT2G32250 42.188 320 184 1 225 543 294 613 1.65e-82 277
MS.gene052043.t1 AT2G32250 42.222 225 97 3 4 228 28 219 2.52e-43 167
MS.gene052043.t1 AT2G32250 42.188 320 184 1 225 543 253 572 1.66e-82 277
MS.gene052043.t1 AT2G32250 44.076 211 85 3 18 228 1 178 6.66e-42 163
MS.gene052043.t1 AT2G32250 42.188 320 184 1 225 543 294 613 2.36e-82 278
MS.gene052043.t1 AT2G32250 42.222 225 97 3 4 228 28 219 3.20e-43 167
MS.gene052043.t1 AT2G32250 42.188 320 184 1 225 543 294 613 2.36e-82 278
MS.gene052043.t1 AT2G32250 42.222 225 97 3 4 228 28 219 3.20e-43 167
MS.gene052043.t1 AT2G32250 42.188 320 184 1 225 543 294 613 2.36e-82 278
MS.gene052043.t1 AT2G32250 42.222 225 97 3 4 228 28 219 3.20e-43 167
MS.gene052043.t1 AT2G32250 42.188 320 184 1 225 543 294 613 2.69e-82 277
MS.gene052043.t1 AT2G32250 42.222 225 97 3 4 228 28 219 3.54e-43 167
MS.gene052043.t1 AT2G32250 42.188 320 184 1 225 543 294 613 2.69e-82 277
MS.gene052043.t1 AT2G32250 42.222 225 97 3 4 228 28 219 3.54e-43 167
MS.gene052043.t1 AT4G38180 36.842 323 197 3 223 538 372 694 1.49e-66 234
MS.gene052043.t1 AT4G38180 38.865 229 116 7 13 223 72 294 1.32e-29 125
MS.gene052043.t1 AT2G27110 34.954 329 208 4 224 548 175 501 3.24e-59 212
MS.gene052043.t1 AT2G27110 34.954 329 208 4 224 548 320 646 1.15e-58 213
MS.gene052043.t1 AT2G27110 31.111 225 124 8 1 217 34 235 1.11e-15 81.6
MS.gene052043.t1 AT2G27110 34.954 329 208 4 224 548 320 646 1.15e-58 213
MS.gene052043.t1 AT2G27110 31.111 225 124 8 1 217 34 235 1.11e-15 81.6
MS.gene052043.t1 AT1G52520 31.707 328 208 6 223 536 369 694 3.01e-49 184
MS.gene052043.t1 AT1G52520 30.837 227 132 7 14 231 85 295 9.34e-17 84.7
MS.gene052043.t1 AT4G38170 32.110 327 213 4 223 542 137 461 7.31e-47 174
MS.gene052043.t1 AT3G06250 36.466 266 151 5 224 482 449 703 1.54e-41 162
MS.gene052043.t1 AT3G06250 26.214 206 121 4 13 217 189 364 8.83e-14 75.5
MS.gene052043.t1 AT3G06250 36.466 266 151 5 224 482 449 703 1.54e-41 162
MS.gene052043.t1 AT3G06250 26.214 206 121 4 13 217 189 364 8.83e-14 75.5
MS.gene052043.t1 AT3G06250 36.466 266 151 5 224 482 449 703 1.54e-41 162
MS.gene052043.t1 AT3G06250 26.214 206 121 4 13 217 189 364 8.83e-14 75.5
MS.gene052043.t1 AT1G80010 30.909 330 207 8 223 539 394 715 1.02e-38 153
MS.gene052043.t1 AT1G80010 29.018 224 133 4 14 218 95 311 8.52e-16 82.0
MS.gene052043.t1 AT5G18960 33.333 261 166 4 224 482 473 727 2.21e-37 149
MS.gene052043.t1 AT5G18960 28.037 214 122 5 8 218 205 389 1.71e-14 77.8
MS.gene052043.t1 AT5G18960 33.333 261 166 4 224 482 473 727 2.21e-37 149
MS.gene052043.t1 AT5G18960 28.037 214 122 5 8 218 205 389 1.71e-14 77.8
MS.gene052043.t1 AT1G10240 26.207 290 196 5 224 505 351 630 1.16e-30 128
MS.gene052043.t1 AT1G10240 26.207 290 196 5 224 505 351 630 1.16e-30 128
MS.gene052043.t1 AT5G28530 24.665 523 318 16 9 478 50 549 2.30e-26 115
MS.gene052043.t1 AT5G28530 24.478 527 318 16 9 478 50 553 2.46e-26 114
MS.gene052043.t1 AT5G28530 27.757 263 176 6 218 478 362 612 3.24e-20 95.9
MS.gene052043.t1 AT5G28530 27.757 263 176 6 218 478 362 612 3.24e-20 95.9
MS.gene052043.t1 AT5G28530 27.341 267 176 6 218 478 362 616 3.72e-20 95.9
MS.gene052043.t1 AT2G43280 31.544 149 96 2 13 155 21 169 4.72e-17 80.9
MS.gene052043.t1 AT3G59470 38.532 109 61 3 13 117 69 175 1.95e-14 74.3
MS.gene052043.t1 AT3G59470 38.532 109 61 3 13 117 69 175 1.95e-14 74.3
MS.gene052043.t1 AT3G59470 38.532 109 61 3 13 117 81 187 2.08e-14 74.3
MS.gene052043.t1 AT2G43280 30.827 133 86 2 29 155 2 134 3.92e-14 71.2
MS.gene052043.t1 AT3G07500 37.288 118 71 1 8 122 27 144 4.47e-14 72.4
MS.gene052043.t1 AT4G12850 35.294 102 66 0 11 112 8 109 4.01e-13 67.8
MS.gene052043.t1 AT4G12850 35.294 102 66 0 11 112 8 109 6.23e-13 67.0
MS.gene052043.t1 AT4G12850 35.294 102 66 0 11 112 8 109 1.57e-12 67.0

Find 133 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTCCATTTCATTATT+AGG 0.082825 2.2:-4452863 None:intergenic
TATGGATTCTTCTATTATTA+TGG 0.187730 2.2:+4452823 None:intergenic
TCTAAAGGGTTGGAGGATTT+TGG 0.197839 2.2:+4453469 MS.gene052043:CDS
CTTCAACATTGCAACCAATA+TGG 0.212680 2.2:-4454710 None:intergenic
ACCTTCTTCACCCAATATTA+TGG 0.238949 2.2:-4454583 None:intergenic
AAAGTTTCAGTTCGAGGTTT+TGG 0.254700 2.2:+4454236 MS.gene052043:CDS
GCCTAGCATCTTTGTTTCCT+TGG 0.254851 2.2:-4455988 None:intergenic
CAAATTCCATTTCATTATTA+GGG 0.256855 2.2:-4452862 None:intergenic
TGTCACTTGTTTGAATATAA+AGG 0.267118 2.2:+4454387 MS.gene052043:CDS
TACATGGCATGATAGCTTTA+TGG 0.278309 2.2:+4453816 MS.gene052043:CDS
GTTTATGAAGGATATTTCTT+TGG 0.305630 2.2:+4453981 MS.gene052043:CDS
AAGCCATGTAGTAACTTTCT+TGG 0.324064 2.2:-4454614 None:intergenic
ATGAATCGTCAACAAGATAA+AGG 0.325098 2.2:+4453307 MS.gene052043:CDS
GATGGTGGAAGCTGGTTGAT+AGG 0.330003 2.2:+4453893 MS.gene052043:CDS
AGTTAAGTAGTCGCCGATCT+AGG 0.332224 2.2:+4452951 MS.gene052043:CDS
CTTAAGAACTCAAGCTGTTT+CGG 0.341887 2.2:-4453793 None:intergenic
TCTTTGGCTGGCTTGTCTAC+TGG 0.346615 2.2:+4453997 MS.gene052043:CDS
GGGGAAGGTGACTTTAATTC+AGG 0.347918 2.2:-4454168 None:intergenic
CCAAGCATCAAAATTTGCTT+TGG 0.356859 2.2:-4454136 None:intergenic
ACAAGATAAAGGGCGGAGTT+TGG 0.376984 2.2:+4453318 MS.gene052043:CDS
TGTAGACGAGCCATAATATT+GGG 0.380324 2.2:+4454573 MS.gene052043:CDS
GCAGCCTTAGCTACCCATAT+TGG 0.380779 2.2:+4454696 MS.gene052043:CDS
ATCGGCTTAGAAATGTGTTC+TGG 0.382613 2.2:+4453440 MS.gene052043:CDS
TTCAACATTGCAACCAATAT+GGG 0.390404 2.2:-4454709 None:intergenic
CCAACTCGGCGGAGGCTTAG+TGG 0.391178 2.2:-4456061 None:intergenic
GTATCAGAATATTGATTGTT+TGG 0.395189 2.2:+4453276 MS.gene052043:CDS
TTCAAACAAGTGACAGGAAC+AGG 0.401839 2.2:-4454379 None:intergenic
ATGTAGACGAGCCATAATAT+TGG 0.410423 2.2:+4454572 MS.gene052043:CDS
AGCCATGTAGTAACTTTCTT+GGG 0.412918 2.2:-4454613 None:intergenic
CCACGTCCTTCCCCGAAAAT+CGG 0.415830 2.2:+4453052 MS.gene052043:CDS
CTGGGTTGATTCTAAAGGGT+TGG 0.419557 2.2:+4453459 MS.gene052043:CDS
TTAAACTTAGAGATGTTAAG+TGG 0.419663 2.2:+4453917 MS.gene052043:CDS
TTGCTTTAGAGCCTCGCTTA+AGG 0.423117 2.2:-4454643 None:intergenic
ATGAAGGATATTTCTTTGGC+TGG 0.424174 2.2:+4453985 MS.gene052043:CDS
CCACTAAGCCTCCGCCGAGT+TGG 0.424184 2.2:+4456061 MS.gene052043:CDS
AGAGAAGACAGGATGGTAAA+TGG 0.425700 2.2:+4453098 MS.gene052043:CDS
TCAAGACCCTAATAATGAAA+TGG 0.426644 2.2:+4452856 MS.gene052043:CDS
CTATCAAAAGTTTCAGTTCG+AGG 0.433567 2.2:+4454230 MS.gene052043:CDS
CTCTATCTTCAAGAATCAAT+TGG 0.436835 2.2:-4454101 None:intergenic
TATGCAAAATCAGCAGGGTT+TGG 0.440167 2.2:+4452920 MS.gene052043:CDS
AAAGAATATGCAAAATCAGC+AGG 0.441479 2.2:+4452914 MS.gene052043:CDS
AGATGCTAGGCAAGGTTGTC+GGG 0.444114 2.2:+4456000 MS.gene052043:CDS
AGGAGGTGTTGAAGGAAGTA+AGG 0.444639 2.2:+4454833 MS.gene052043:CDS
ATCATTTAATCTCCGGACCT+TGG 0.446449 2.2:-4454547 None:intergenic
GTGTTCTGGGTTGATTCTAA+AGG 0.446481 2.2:+4453454 MS.gene052043:CDS
TTACTTCCTTCAACACCTCC+TGG 0.448450 2.2:-4454831 None:intergenic
TGTTCTGGGTTGATTCTAAA+GGG 0.454484 2.2:+4453455 MS.gene052043:CDS
GCGGAGCGTGCGGCGCGCCG+AGG 0.461554 2.2:+4456109 MS.gene052043:CDS
TAGCGATGGCTTTCAACAAA+TGG 0.466048 2.2:+4454971 MS.gene052043:CDS
AGGAGTCCAGGAGGTGTTGA+AGG 0.470185 2.2:+4454825 MS.gene052043:CDS
GGTTGATTCTAAAGGGTTGG+AGG 0.473041 2.2:+4453462 MS.gene052043:CDS
TGAATTGTTTATGCATATGC+AGG 0.475105 2.2:+4453372 MS.gene052043:CDS
ATTGTTGTTCTACAAATGTC+TGG 0.476184 2.2:+4454429 MS.gene052043:CDS
GTATCCTATTGGTGAAAACT+TGG 0.480416 2.2:+4454512 MS.gene052043:CDS
GCCATATAGGTGCCTCAGCT+TGG 0.482653 2.2:+4454933 MS.gene052043:intron
AGTAAGAAGGCTGCAAGGAC+TGG 0.483811 2.2:+4454792 MS.gene052043:CDS
ATATGGTAATAAACAACAAT+CGG 0.483815 2.2:+4453015 MS.gene052043:CDS
TACATAAATCATTTAATCTC+CGG 0.485589 2.2:-4454554 None:intergenic
GCTGCAAGGACTGGTGTAGC+TGG 0.488741 2.2:+4454801 MS.gene052043:CDS
TCTTGAAGATAGAGATGAAG+AGG 0.488747 2.2:+4454110 MS.gene052043:CDS
TGAAAAGAGATGGTGGAAGC+TGG 0.490757 2.2:+4453885 MS.gene052043:CDS
TATTATACCATCTAACGATA+AGG 0.493893 2.2:+4454746 MS.gene052043:CDS
TTGGGTGCCAACGTTTATGA+AGG 0.495738 2.2:+4453969 MS.gene052043:CDS
CGGAGGAAGAATTCGACTGC+AGG 0.496134 2.2:+4453232 MS.gene052043:CDS
ATCAGAACTACATGGTAGAA+TGG 0.499877 2.2:+4454334 MS.gene052043:CDS
TCGGAGACCTTATCGTTAGA+TGG 0.500112 2.2:-4454753 None:intergenic
ACAAATGTATATATCAATCA+TGG 0.501166 2.2:+4453848 MS.gene052043:CDS
GGTGTAGCTGGTAGGAGTCC+AGG 0.504600 2.2:+4454813 MS.gene052043:CDS
AGTTGGAGCGGTTCGAAGAT+CGG 0.505748 2.2:+4456078 MS.gene052043:CDS
TGAATCGTCAACAAGATAAA+GGG 0.505965 2.2:+4453308 MS.gene052043:CDS
TCGGCTTAGAAATGTGTTCT+GGG 0.507619 2.2:+4453441 MS.gene052043:CDS
GCTTTAAGTAGGTATCCTAT+TGG 0.508050 2.2:+4454501 MS.gene052043:CDS
GAACCGCTCCAACTCGGCGG+AGG 0.508382 2.2:-4456069 None:intergenic
CAAAGTACATATTGAAAAGA+TGG 0.509419 2.2:+4454469 MS.gene052043:CDS
TGCGGCGCGCCGAGGAAGAT+CGG 0.510943 2.2:+4456117 MS.gene052043:CDS
GTATGATGATCGTGCATGTT+GGG 0.511716 2.2:+4453951 MS.gene052043:CDS
GCCATAATATTGGGTGAAGA+AGG 0.513780 2.2:+4454582 MS.gene052043:CDS
TTTATATTCAAACAAGTGAC+AGG 0.515815 2.2:-4454385 None:intergenic
AGCAATTTGAAAAGAGATGG+TGG 0.516518 2.2:+4453878 MS.gene052043:CDS
AAGATGCTAGGCAAGGTTGT+CGG 0.517588 2.2:+4455999 MS.gene052043:CDS
AGCTTGAGTTCTTAAGTACA+TGG 0.520700 2.2:+4453800 MS.gene052043:CDS
ATCCCAAGAAAGTTACTACA+TGG 0.521925 2.2:+4454611 MS.gene052043:CDS
ATTCTTTCGATGCCCTAGAT+CGG 0.531419 2.2:-4452964 None:intergenic
AAGAGGTTCAATCCAAGGTC+CGG 0.533736 2.2:+4454535 MS.gene052043:CDS
CAACAATTGCATGTCTACAT+AGG 0.534107 2.2:-4454413 None:intergenic
TATTGGTGAAAACTTGGAAG+AGG 0.534284 2.2:+4454518 MS.gene052043:CDS
GTTAAGTAGTCGCCGATCTA+GGG 0.536955 2.2:+4452952 MS.gene052043:CDS
TTGATTTGAATGAAGAGCAT+CGG 0.543981 2.2:+4453422 MS.gene052043:CDS
GAAATATCCTTCATAAACGT+TGG 0.547589 2.2:-4453976 None:intergenic
GGCTTTAAGTTCCTTAAGCG+AGG 0.551032 2.2:+4454632 MS.gene052043:CDS
GTCTTAATGAAGTATCAACT+TGG 0.551353 2.2:-4454062 None:intergenic
CGAAAATAATCAGAACTACA+TGG 0.553895 2.2:+4454326 MS.gene052043:CDS
AGAAGCAATTGAGCATTCCC+CGG 0.554547 2.2:-4453349 None:intergenic
GAAAATGAATACGAGTAAGA+AGG 0.555256 2.2:+4454779 MS.gene052043:CDS
CATCTAAAGAAAGAAAATGA+TGG 0.556147 2.2:+4454273 MS.gene052043:CDS
GCAACCAATATGGGTAGCTA+AGG 0.558177 2.2:-4454700 None:intergenic
CAAGGACTGGTGTAGCTGGT+AGG 0.565226 2.2:+4454805 MS.gene052043:CDS
ATACGTTGAGTAATGATGTT+CGG 0.569177 2.2:+4453203 MS.gene052043:CDS
GGAAGAGATGGCGGAGCGTG+CGG 0.570570 2.2:+4456099 MS.gene052043:CDS
AAGAATTCGACTGCAGGTGG+TGG 0.578130 2.2:+4453238 MS.gene052043:CDS
GGTTCGAAGATCGGAAGAGA+TGG 0.579634 2.2:+4456087 MS.gene052043:CDS
TGTATGATGATCGTGCATGT+TGG 0.580054 2.2:+4453950 MS.gene052043:CDS
AAGCCTCCGCCGAGTTGGAG+CGG 0.580562 2.2:+4456066 MS.gene052043:CDS
AGGAGCAATTTGAAAAGAGA+TGG 0.582141 2.2:+4453875 MS.gene052043:CDS
GGACAAACGTCGCTTTAAGT+AGG 0.584827 2.2:+4454490 MS.gene052043:CDS
TAAACTTAGAGATGTTAAGT+GGG 0.586727 2.2:+4453918 MS.gene052043:CDS
CTTGGAAGAGGTTCAATCCA+AGG 0.589927 2.2:+4454530 MS.gene052043:CDS
TTCTGTCATGCGAACAAACG+CGG 0.606713 2.2:-4456155 None:intergenic
ATCTTCGAACCGCTCCAACT+CGG 0.608604 2.2:-4456075 None:intergenic
TGTTGAAGGAAGTAAGGGAA+AGG 0.609259 2.2:+4454839 MS.gene052043:CDS
GTAATGATGTTCGGATGAGA+CGG 0.611128 2.2:+4453212 MS.gene052043:CDS
AAGAATATGCAAAATCAGCA+GGG 0.611582 2.2:+4452915 MS.gene052043:CDS
TCAATCGCATAAAAGAACTT+CGG 0.614970 2.2:-4453403 None:intergenic
ACCAAGGAAACAAAGATGCT+AGG 0.617314 2.2:+4455987 MS.gene052043:CDS
TATGCATGTGAAGAGAAGAC+AGG 0.617413 2.2:+4453087 MS.gene052043:CDS
AGGAAGAATTCGACTGCAGG+TGG 0.619877 2.2:+4453235 MS.gene052043:CDS
CCGCTTACTGCTCCAAGCTG+AGG 0.621278 2.2:-4454945 None:intergenic
GGAGGTGTTGAAGGAAGTAA+GGG 0.627245 2.2:+4454834 MS.gene052043:CDS
GCAGTAAGCGGTAGTAGCGA+TGG 0.628228 2.2:+4454957 MS.gene052043:CDS
AGAATGGAACACATCAAACT+CGG 0.636732 2.2:+4454350 MS.gene052043:CDS
GGAAACAAAGATGCTAGGCA+AGG 0.640932 2.2:+4455992 MS.gene052043:CDS
TCGAAGATCGGAAGAGATGG+CGG 0.643654 2.2:+4456090 MS.gene052043:CDS
ACATGCACGATCATCATACA+AGG 0.650096 2.2:-4453947 None:intergenic
ATCAAACAAAAGGAAAACCA+AGG 0.652840 2.2:+4455971 MS.gene052043:intron
ATGACAGAAGAATCATGTGA+AGG 0.658115 2.2:+4456169 MS.gene052043:CDS
TTCGAACCGCTCCAACTCGG+CGG 0.661077 2.2:-4456072 None:intergenic
CATGTGAAGAGAAGACAGGA+TGG 0.667982 2.2:+4453091 MS.gene052043:CDS
CCTCAGCTTGGAGCAGTAAG+CGG 0.668712 2.2:+4454945 MS.gene052043:CDS
ATCGTCAACAAGATAAAGGG+CGG 0.671459 2.2:+4453311 MS.gene052043:CDS
TATATATCAATCATGGACAG+AGG 0.673001 2.2:+4453855 MS.gene052043:CDS
ATACGAGTAAGAAGGCTGCA+AGG 0.675579 2.2:+4454787 MS.gene052043:CDS
ATGATGTTCGGATGAGACGG+AGG 0.681860 2.2:+4453215 MS.gene052043:CDS
GTAGCTGGTAGGAGTCCAGG+AGG 0.701373 2.2:+4454816 MS.gene052043:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTCAAAAAAAATATATT+GGG + chr2.2:4455638-4455657 MS.gene052043:intron 10.0%
!! CTTCTTCAAAAAAAATATAT+TGG + chr2.2:4455637-4455656 MS.gene052043:intron 15.0%
!!! ACAATTTAAAATCAAACAAA+AGG + chr2.2:4455961-4455980 MS.gene052043:intron 15.0%
!!! GTTTGATTTTAAATTGTTTA+TGG - chr2.2:4455958-4455977 None:intergenic 15.0%
!!! TGCATATTTTAAAACTAAAA+CGG + chr2.2:4455834-4455853 MS.gene052043:intron 15.0%
!!! TTTTGTCATTTTTCTTTTTT+AGG + chr2.2:4455683-4455702 MS.gene052043:intron 15.0%
!! ACAAATGTATATATCAATCA+TGG + chr2.2:4453848-4453867 MS.gene052043:CDS 20.0%
!! ATATGGTAATAAACAACAAT+CGG + chr2.2:4453015-4453034 MS.gene052043:CDS 20.0%
!! CAAATTCCATTTCATTATTA+GGG - chr2.2:4452865-4452884 None:intergenic 20.0%
!! TACATAAATCATTTAATCTC+CGG - chr2.2:4454557-4454576 None:intergenic 20.0%
!! TCAAATTCCATTTCATTATT+AGG - chr2.2:4452866-4452885 None:intergenic 20.0%
!! TGTTAAAAAAAAAACGTGTT+TGG + chr2.2:4455522-4455541 MS.gene052043:intron 20.0%
!!! AAAAAAACTGTTTTCAAAGA+TGG - chr2.2:4455405-4455424 None:intergenic 20.0%
!!! AAATTTTCGTGTATTAGATA+TGG + chr2.2:4452998-4453017 MS.gene052043:CDS 20.0%
!!! ATCTTTGAAAACAGTTTTTT+TGG + chr2.2:4455404-4455423 MS.gene052043:intron 20.0%
!!! GCATATTTTAAAACTAAAAC+GGG + chr2.2:4455835-4455854 MS.gene052043:intron 20.0%
!!! GTATGTTTATAGTTTTGTTA+AGG + chr2.2:4453120-4453139 MS.gene052043:CDS 20.0%
!!! TATTTTGTCTCAAAGTTAAT+TGG + chr2.2:4455344-4455363 MS.gene052043:intron 20.0%
!!! TTTTATGAAATTTGATGAAG+AGG - chr2.2:4455906-4455925 None:intergenic 20.0%
! AAAAAAAAAACGTGTTTGGA+AGG + chr2.2:4455526-4455545 MS.gene052043:intron 25.0%
! AAAAAAAAACGTGTTTGGAA+GGG + chr2.2:4455527-4455546 MS.gene052043:intron 25.0%
! AATTGAAACGCTTAGATATT+TGG + chr2.2:4455187-4455206 MS.gene052043:intron 25.0%
! ACAAAATAACCAACGAAAAT+TGG - chr2.2:4455332-4455351 None:intergenic 25.0%
! ATAATGCTTAATATGTTGAC+TGG + chr2.2:4455217-4455236 MS.gene052043:intron 25.0%
! CAAAGTACATATTGAAAAGA+TGG + chr2.2:4454469-4454488 MS.gene052043:CDS 25.0%
! CATCTAAAGAAAGAAAATGA+TGG + chr2.2:4454273-4454292 MS.gene052043:CDS 25.0%
! GTTTATGAAGGATATTTCTT+TGG + chr2.2:4453981-4454000 MS.gene052043:CDS 25.0%
! TAAACTTAGAGATGTTAAGT+GGG + chr2.2:4453918-4453937 MS.gene052043:CDS 25.0%
! TATTATACCATCTAACGATA+AGG + chr2.2:4454746-4454765 MS.gene052043:CDS 25.0%
! TTAAACTTAGAGATGTTAAG+TGG + chr2.2:4453917-4453936 MS.gene052043:CDS 25.0%
! TTTATATTCAAACAAGTGAC+AGG - chr2.2:4454388-4454407 None:intergenic 25.0%
!! CAAAATTACTACTTCAGTTT+TGG + chr2.2:4455283-4455302 MS.gene052043:intron 25.0%
!! CATCATTTTCTTTCTTTAGA+TGG - chr2.2:4454275-4454294 None:intergenic 25.0%
!! CATCTTTTCAATATGTACTT+TGG - chr2.2:4454471-4454490 None:intergenic 25.0%
!! GTATCAGAATATTGATTGTT+TGG + chr2.2:4453276-4453295 MS.gene052043:CDS 25.0%
!! TGTCACTTGTTTGAATATAA+AGG + chr2.2:4454387-4454406 MS.gene052043:CDS 25.0%
!! TTCTTACTCGTATTCATTTT+CGG - chr2.2:4454780-4454799 None:intergenic 25.0%
!!! AGCTTGTTGTTGAATAATAT+TGG + chr2.2:4455571-4455590 MS.gene052043:intron 25.0%
!!! GAAGACATATTTTTGTAGTT+TGG + chr2.2:4455253-4455272 MS.gene052043:intron 25.0%
!!! TTATTTTGTCCAATTTTCGT+TGG + chr2.2:4455320-4455339 MS.gene052043:intron 25.0%
AAAAAAAACGTGTTTGGAAG+GGG + chr2.2:4455528-4455547 MS.gene052043:intron 30.0%
AAAGAATATGCAAAATCAGC+AGG + chr2.2:4452914-4452933 MS.gene052043:CDS 30.0%
AAGAATATGCAAAATCAGCA+GGG + chr2.2:4452915-4452934 MS.gene052043:CDS 30.0%
ACAAACAGTGTTAATGAAGA+AGG + chr2.2:4455774-4455793 MS.gene052043:intron 30.0%
ATACGTTGAGTAATGATGTT+CGG + chr2.2:4453203-4453222 MS.gene052043:CDS 30.0%
ATCAAACAAAAGGAAAACCA+AGG + chr2.2:4455971-4455990 MS.gene052043:intron 30.0%
ATCTGACAGAATGTAATGAA+AGG - chr2.2:4455093-4455112 None:intergenic 30.0%
ATGAATCGTCAACAAGATAA+AGG + chr2.2:4453307-4453326 MS.gene052043:CDS 30.0%
ATGGCATTTAGACAAAACTA+AGG - chr2.2:4455062-4455081 None:intergenic 30.0%
CAAACAGTGTTAATGAAGAA+GGG + chr2.2:4455775-4455794 MS.gene052043:intron 30.0%
CGAAAATAATCAGAACTACA+TGG + chr2.2:4454326-4454345 MS.gene052043:CDS 30.0%
CTCTATCTTCAAGAATCAAT+TGG - chr2.2:4454104-4454123 None:intergenic 30.0%
GAAAATGAATACGAGTAAGA+AGG + chr2.2:4454779-4454798 MS.gene052043:CDS 30.0%
GAAATATCCTTCATAAACGT+TGG - chr2.2:4453979-4453998 None:intergenic 30.0%
TATATATCAATCATGGACAG+AGG + chr2.2:4453855-4453874 MS.gene052043:CDS 30.0%
TCAAGACCCTAATAATGAAA+TGG + chr2.2:4452856-4452875 MS.gene052043:CDS 30.0%
TCAATCGCATAAAAGAACTT+CGG - chr2.2:4453406-4453425 None:intergenic 30.0%
TCCAAAATCTAAACCAGTAA+GGG - chr2.2:4455165-4455184 None:intergenic 30.0%
TCTGACAGAATGTAATGAAA+GGG - chr2.2:4455092-4455111 None:intergenic 30.0%
TCTTAAAATTGTCTCTGACT+TGG + chr2.2:4454900-4454919 MS.gene052043:intron 30.0%
TGAATCGTCAACAAGATAAA+GGG + chr2.2:4453308-4453327 MS.gene052043:CDS 30.0%
TGAATTGTTTATGCATATGC+AGG + chr2.2:4453372-4453391 MS.gene052043:CDS 30.0%
TGGCATTTAGACAAAACTAA+GGG - chr2.2:4455061-4455080 None:intergenic 30.0%
TGTGTATTTGATGAGAACTT+AGG + chr2.2:4455805-4455824 MS.gene052043:intron 30.0%
TTCAACATTGCAACCAATAT+GGG - chr2.2:4454712-4454731 None:intergenic 30.0%
TTGATGTTGTTGTGTGAATT+TGG + chr2.2:4455456-4455475 MS.gene052043:intron 30.0%
! ATTGTTGTTCTACAAATGTC+TGG + chr2.2:4454429-4454448 MS.gene052043:CDS 30.0%
! CTTTTCAATATGTACTTTGG+CGG - chr2.2:4454468-4454487 None:intergenic 30.0%
! GTCTTAATGAAGTATCAACT+TGG - chr2.2:4454065-4454084 None:intergenic 30.0%
! TTGATTTGAATGAAGAGCAT+CGG + chr2.2:4453422-4453441 MS.gene052043:CDS 30.0%
! TTTTCAATATGTACTTTGGC+GGG - chr2.2:4454467-4454486 None:intergenic 30.0%
!! ACAATTTTAAGAGTACAAGG+AGG - chr2.2:4454892-4454911 None:intergenic 30.0%
!! AGACTGTATTTACTTTTGTG+TGG + chr2.2:4453623-4453642 MS.gene052043:intron 30.0%
!! CAGCTTTAATAGCATCATTT+TGG - chr2.2:4453708-4453727 None:intergenic 30.0%
!! GAGACAATTTTAAGAGTACA+AGG - chr2.2:4454895-4454914 None:intergenic 30.0%
!! TTTTTGTTTGTGGCATGTTT+TGG + chr2.2:4453762-4453781 MS.gene052043:CDS 30.0%
!!! CAGTTTTTTTGGTTCCAAAA+TGG + chr2.2:4455415-4455434 MS.gene052043:intron 30.0%
AAAAAAACGTGTTTGGAAGG+GGG + chr2.2:4455529-4455548 MS.gene052043:intron 35.0%
AAGCAAGTATAAGATACCGT+TGG + chr2.2:4453534-4453553 MS.gene052043:intron 35.0%
AAGCCATGTAGTAACTTTCT+TGG - chr2.2:4454617-4454636 None:intergenic 35.0%
ACAAAAACAATGACGTGTTC+CGG - chr2.2:4453749-4453768 None:intergenic 35.0%
ACCTTCTTCACCCAATATTA+TGG - chr2.2:4454586-4454605 None:intergenic 35.0%
AGAATGGAACACATCAAACT+CGG + chr2.2:4454350-4454369 MS.gene052043:CDS 35.0%
AGCAATTTGAAAAGAGATGG+TGG + chr2.2:4453878-4453897 MS.gene052043:CDS 35.0%
AGCCATGTAGTAACTTTCTT+GGG - chr2.2:4454616-4454635 None:intergenic 35.0%
AGCTTGAGTTCTTAAGTACA+TGG + chr2.2:4453800-4453819 MS.gene052043:CDS 35.0%
AGGAGCAATTTGAAAAGAGA+TGG + chr2.2:4453875-4453894 MS.gene052043:CDS 35.0%
ATCAGAACTACATGGTAGAA+TGG + chr2.2:4454334-4454353 MS.gene052043:CDS 35.0%
ATCCCAAGAAAGTTACTACA+TGG + chr2.2:4454611-4454630 MS.gene052043:CDS 35.0%
ATGAAGGATATTTCTTTGGC+TGG + chr2.2:4453985-4454004 MS.gene052043:CDS 35.0%
ATGACAGAAGAATCATGTGA+AGG + chr2.2:4456169-4456188 MS.gene052043:CDS 35.0%
ATGTAGACGAGCCATAATAT+TGG + chr2.2:4454572-4454591 MS.gene052043:CDS 35.0%
ATTACCCACTCAAATTGAAC+CGG - chr2.2:4455613-4455632 None:intergenic 35.0%
CAACAATTGCATGTCTACAT+AGG - chr2.2:4454416-4454435 None:intergenic 35.0%
CTATCAAAAGTTTCAGTTCG+AGG + chr2.2:4454230-4454249 MS.gene052043:CDS 35.0%
CTCCAAAATCTAAACCAGTA+AGG - chr2.2:4455166-4455185 None:intergenic 35.0%
CTGACAGAATGTAATGAAAG+GGG - chr2.2:4455091-4455110 None:intergenic 35.0%
CTTAAGAACTCAAGCTGTTT+CGG - chr2.2:4453796-4453815 None:intergenic 35.0%
CTTCAACATTGCAACCAATA+TGG - chr2.2:4454713-4454732 None:intergenic 35.0%
GAACGCAATAGAAAAAGTCA+GGG - chr2.2:4455006-4455025 None:intergenic 35.0%
GGCATTTAGACAAAACTAAG+GGG - chr2.2:4455060-4455079 None:intergenic 35.0%
GTATCCTATTGGTGAAAACT+TGG + chr2.2:4454512-4454531 MS.gene052043:CDS 35.0%
GTCATTTAAAGAGACCTCAT+AGG + chr2.2:4455865-4455884 MS.gene052043:intron 35.0%
TATTGGTGAAAACTTGGAAG+AGG + chr2.2:4454518-4454537 MS.gene052043:CDS 35.0%
TCTTGAAGATAGAGATGAAG+AGG + chr2.2:4454110-4454129 MS.gene052043:CDS 35.0%
TGAAACGCTTAGATATTTGG+AGG + chr2.2:4455190-4455209 MS.gene052043:intron 35.0%
TGAACGCAATAGAAAAAGTC+AGG - chr2.2:4455007-4455026 None:intergenic 35.0%
TGGCATTCTTTATGCCATAT+AGG + chr2.2:4454920-4454939 MS.gene052043:intron 35.0%
TGTAGACGAGCCATAATATT+GGG + chr2.2:4454573-4454592 MS.gene052043:CDS 35.0%
! AAACATGGTTTGTAGCAATG+GGG + chr2.2:4453653-4453672 MS.gene052043:intron 35.0%
! AAAGTTTCAGTTCGAGGTTT+TGG + chr2.2:4454236-4454255 MS.gene052043:CDS 35.0%
! AAGTTTCAGTTCGAGGTTTT+GGG + chr2.2:4454237-4454256 MS.gene052043:CDS 35.0%
! ACTCGTATTCATTTTCGGAT+CGG - chr2.2:4454775-4454794 None:intergenic 35.0%
! CAAACATGGTTTGTAGCAAT+GGG + chr2.2:4453652-4453671 MS.gene052043:intron 35.0%
! CCAAGCATCAAAATTTGCTT+TGG - chr2.2:4454139-4454158 None:intergenic 35.0%
! CTACATGATAGCAACCATTT+TGG - chr2.2:4455432-4455451 None:intergenic 35.0%
! GCTTTAAGTAGGTATCCTAT+TGG + chr2.2:4454501-4454520 MS.gene052043:CDS 35.0%
! GTTGACTGGTTCATTTAGTT+TGG + chr2.2:4455231-4455250 MS.gene052043:intron 35.0%
! TACATGGCATGATAGCTTTA+TGG + chr2.2:4453816-4453835 MS.gene052043:CDS 35.0%
! TCTTCCAAGTTTTCACCAAT+AGG - chr2.2:4454519-4454538 None:intergenic 35.0%
!! CCAAAGCAAATTTTGATGCT+TGG + chr2.2:4454136-4454155 MS.gene052043:CDS 35.0%
!! CTTGCTTTACAACCGATTTT+CGG - chr2.2:4453067-4453086 None:intergenic 35.0%
!! TGTTCTGGGTTGATTCTAAA+GGG + chr2.2:4453455-4453474 MS.gene052043:CDS 35.0%
!! TTGCTTTACAACCGATTTTC+GGG - chr2.2:4453066-4453085 None:intergenic 35.0%
!!! AACAGCAGTTGTTTTTCGAA+AGG - chr2.2:4454192-4454211 None:intergenic 35.0%
!!! ACAGCAGTTGTTTTTCGAAA+GGG - chr2.2:4454191-4454210 None:intergenic 35.0%
!!! CACGTCATTGTTTTTGTTTG+TGG + chr2.2:4453752-4453771 MS.gene052043:CDS 35.0%
!!! CTCATTTTTTTCGGAGTCAT+AGG + chr2.2:4453173-4453192 MS.gene052043:CDS 35.0%
!!! CTGCTCAAGCTCATTTTTTT+CGG + chr2.2:4453164-4453183 MS.gene052043:CDS 35.0%
!!! TCCCTTACTGGTTTAGATTT+TGG + chr2.2:4455161-4455180 MS.gene052043:intron 35.0%
AATGCACATCCAAGCAATGT+TGG - chr2.2:4453592-4453611 None:intergenic 40.0%
ACAGAATGTAATGAAAGGGG+AGG - chr2.2:4455088-4455107 None:intergenic 40.0%
ACAGTGTTAATGAAGAAGGG+AGG + chr2.2:4455778-4455797 MS.gene052043:intron 40.0%
ACATGCACGATCATCATACA+AGG - chr2.2:4453950-4453969 None:intergenic 40.0%
ACCAAGGAAACAAAGATGCT+AGG + chr2.2:4455987-4456006 MS.gene052043:CDS 40.0%
ACCAGTAAGGGAAAACGAAA+AGG - chr2.2:4455153-4455172 None:intergenic 40.0%
AGAGAAGACAGGATGGTAAA+TGG + chr2.2:4453098-4453117 MS.gene052043:CDS 40.0%
ATCATTTAATCTCCGGACCT+TGG - chr2.2:4454550-4454569 None:intergenic 40.0%
ATCGTCAACAAGATAAAGGG+CGG + chr2.2:4453311-4453330 MS.gene052043:CDS 40.0%
ATTCTTTCGATGCCCTAGAT+CGG - chr2.2:4452967-4452986 None:intergenic 40.0%
CAAAAACAATGACGTGTTCC+GGG - chr2.2:4453748-4453767 None:intergenic 40.0%
CATGTTCAACCAACATTGCT+TGG + chr2.2:4453580-4453599 MS.gene052043:intron 40.0%
CGAAAAAAATGAGCTTGAGC+AGG - chr2.2:4453166-4453185 None:intergenic 40.0%
GCCATAATATTGGGTGAAGA+AGG + chr2.2:4454582-4454601 MS.gene052043:CDS 40.0%
GTAATGAAAGGGGAGGTTAA+TGG - chr2.2:4455081-4455100 None:intergenic 40.0%
GTAATGATGTTCGGATGAGA+CGG + chr2.2:4453212-4453231 MS.gene052043:CDS 40.0%
GTATGATGATCGTGCATGTT+GGG + chr2.2:4453951-4453970 MS.gene052043:CDS 40.0%
TAGCGATGGCTTTCAACAAA+TGG + chr2.2:4454971-4454990 MS.gene052043:CDS 40.0%
TATGCAAAATCAGCAGGGTT+TGG + chr2.2:4452920-4452939 MS.gene052043:CDS 40.0%
TATGCATGTGAAGAGAAGAC+AGG + chr2.2:4453087-4453106 MS.gene052043:CDS 40.0%
TCGGCTTAGAAATGTGTTCT+GGG + chr2.2:4453441-4453460 MS.gene052043:CDS 40.0%
TGTATGATGATCGTGCATGT+TGG + chr2.2:4453950-4453969 MS.gene052043:CDS 40.0%
TGTTGAAGGAAGTAAGGGAA+AGG + chr2.2:4454839-4454858 MS.gene052043:CDS 40.0%
TTCAAACAAGTGACAGGAAC+AGG - chr2.2:4454382-4454401 None:intergenic 40.0%
TTGTGTGGTTACTGCAAACA+TGG + chr2.2:4453638-4453657 MS.gene052043:intron 40.0%
! AACATGGTTTGTAGCAATGG+GGG + chr2.2:4453654-4453673 MS.gene052043:intron 40.0%
! ACCTTTTCGTTTTCCCTTAC+TGG + chr2.2:4455149-4455168 MS.gene052043:intron 40.0%
! ATCGGCTTAGAAATGTGTTC+TGG + chr2.2:4453440-4453459 MS.gene052043:CDS 40.0%
! GCAAACATGGTTTGTAGCAA+TGG + chr2.2:4453651-4453670 MS.gene052043:intron 40.0%
! GCAATGTTGGTTGAACATGA+TGG - chr2.2:4453579-4453598 None:intergenic 40.0%
! TCTAAAGGGTTGGAGGATTT+TGG + chr2.2:4453469-4453488 MS.gene052043:CDS 40.0%
!! ACTCCAACAAAAAGCACCAA+CGG - chr2.2:4453553-4453572 None:intergenic 40.0%
!! ATACCGTTGGTGCTTTTTGT+TGG + chr2.2:4453547-4453566 MS.gene052043:intron 40.0%
!! CTTACCGGTTCAATTTGAGT+GGG + chr2.2:4455606-4455625 MS.gene052043:intron 40.0%
!! GTGTTCTGGGTTGATTCTAA+AGG + chr2.2:4453454-4453473 MS.gene052043:CDS 40.0%
!! TCTTACCGGTTCAATTTGAG+TGG + chr2.2:4455605-4455624 MS.gene052043:intron 40.0%
!! TGCTTTACAACCGATTTTCG+GGG - chr2.2:4453065-4453084 None:intergenic 40.0%
!!! AGTTGTTTTTCGAAAGGGGA+AGG - chr2.2:4454186-4454205 None:intergenic 40.0%
!!! CAGCAGTTGTTTTTCGAAAG+GGG - chr2.2:4454190-4454209 None:intergenic 40.0%
AAGAGGTTCAATCCAAGGTC+CGG + chr2.2:4454535-4454554 MS.gene052043:CDS 45.0%
AAGATGCTAGGCAAGGTTGT+CGG + chr2.2:4455999-4456018 MS.gene052043:CDS 45.0%
AATCACACTCACGTCCTATG+AGG - chr2.2:4455882-4455901 None:intergenic 45.0%
ACAAGATAAAGGGCGGAGTT+TGG + chr2.2:4453318-4453337 MS.gene052043:CDS 45.0%
AGAAGCAATTGAGCATTCCC+CGG - chr2.2:4453352-4453371 None:intergenic 45.0%
AGTTAAGTAGTCGCCGATCT+AGG + chr2.2:4452951-4452970 MS.gene052043:CDS 45.0%
ATACGAGTAAGAAGGCTGCA+AGG + chr2.2:4454787-4454806 MS.gene052043:CDS 45.0%
CATGTGAAGAGAAGACAGGA+TGG + chr2.2:4453091-4453110 MS.gene052043:CDS 45.0%
CTTGGAAGAGGTTCAATCCA+AGG + chr2.2:4454530-4454549 MS.gene052043:CDS 45.0%
GAAGGAAGTAAGGGAAAGGT+TGG + chr2.2:4454843-4454862 MS.gene052043:intron 45.0%
GCAACCAATATGGGTAGCTA+AGG - chr2.2:4454703-4454722 None:intergenic 45.0%
GGAAACAAAGATGCTAGGCA+AGG + chr2.2:4455992-4456011 MS.gene052043:CDS 45.0%
GGGGAAGGTGACTTTAATTC+AGG - chr2.2:4454171-4454190 None:intergenic 45.0%
GTTAAGTAGTCGCCGATCTA+GGG + chr2.2:4452952-4452971 MS.gene052043:CDS 45.0%
TCGGAGACCTTATCGTTAGA+TGG - chr2.2:4454756-4454775 None:intergenic 45.0%
TGGTCAGTTAGAATCACCTG+CGG - chr2.2:4453688-4453707 None:intergenic 45.0%
TTACTTCCTTCAACACCTCC+TGG - chr2.2:4454834-4454853 None:intergenic 45.0%
TTCTGTCATGCGAACAAACG+CGG - chr2.2:4456158-4456177 None:intergenic 45.0%
TTGGAAGGGGGTCTCTAAAT+GGG + chr2.2:4455541-4455560 MS.gene052043:intron 45.0%
TTGGGTGCCAACGTTTATGA+AGG + chr2.2:4453969-4453988 MS.gene052043:CDS 45.0%
TTTGGAAGGGGGTCTCTAAA+TGG + chr2.2:4455540-4455559 MS.gene052043:intron 45.0%
! CACGATTTTCCGATCTTCCT+CGG - chr2.2:4456129-4456148 None:intergenic 45.0%
! GCCTAGCATCTTTGTTTCCT+TGG - chr2.2:4455991-4456010 None:intergenic 45.0%
! GGACAAACGTCGCTTTAAGT+AGG + chr2.2:4454490-4454509 MS.gene052043:CDS 45.0%
! GGTTGATTCTAAAGGGTTGG+AGG + chr2.2:4453462-4453481 MS.gene052043:CDS 45.0%
! TGGAAGCATGCAACTCTTAC+CGG + chr2.2:4455591-4455610 MS.gene052043:intron 45.0%
!! AGGAGGTGTTGAAGGAAGTA+AGG + chr2.2:4454833-4454852 MS.gene052043:CDS 45.0%
!! CTGGGTTGATTCTAAAGGGT+TGG + chr2.2:4453459-4453478 MS.gene052043:CDS 45.0%
!! GGAGGTGTTGAAGGAAGTAA+GGG + chr2.2:4454834-4454853 MS.gene052043:CDS 45.0%
!! GGCTTTAAGTTCCTTAAGCG+AGG + chr2.2:4454632-4454651 MS.gene052043:CDS 45.0%
!! TGAAAAGAGATGGTGGAAGC+TGG + chr2.2:4453885-4453904 MS.gene052043:CDS 45.0%
!! TTACAACCGATTTTCGGGGA+AGG - chr2.2:4453061-4453080 None:intergenic 45.0%
!! TTGCTTTAGAGCCTCGCTTA+AGG - chr2.2:4454646-4454665 None:intergenic 45.0%
!!! CGGAGTTTGGTTTTAGAACC+GGG + chr2.2:4453331-4453350 MS.gene052043:CDS 45.0%
!!! GCGGAGTTTGGTTTTAGAAC+CGG + chr2.2:4453330-4453349 MS.gene052043:CDS 45.0%
!!! GGAGTTTGGTTTTAGAACCG+GGG + chr2.2:4453332-4453351 MS.gene052043:CDS 45.0%
!!! AATTTTTTTTTGTATTATAA+CGG + chr2.2:4455747-4455766 MS.gene052043:intron 5.0%
!!! TTTTTTTTTTTGTATTATAA+CGG + chr2.2:4455718-4455737 MS.gene052043:intron 5.0%
AAGAATTCGACTGCAGGTGG+TGG + chr2.2:4453238-4453257 MS.gene052043:CDS 50.0%
AGATGCTAGGCAAGGTTGTC+GGG + chr2.2:4456000-4456019 MS.gene052043:CDS 50.0%
AGGAAGAATTCGACTGCAGG+TGG + chr2.2:4453235-4453254 MS.gene052043:CDS 50.0%
AGTAAGAAGGCTGCAAGGAC+TGG + chr2.2:4454792-4454811 MS.gene052043:CDS 50.0%
AGTTGGAGCGGTTCGAAGAT+CGG + chr2.2:4456078-4456097 MS.gene052043:CDS 50.0%
ATCTTCGAACCGCTCCAACT+CGG - chr2.2:4456078-4456097 None:intergenic 50.0%
ATGATGTTCGGATGAGACGG+AGG + chr2.2:4453215-4453234 MS.gene052043:CDS 50.0%
GCAGCCTTAGCTACCCATAT+TGG + chr2.2:4454696-4454715 MS.gene052043:CDS 50.0%
GGTTCGAAGATCGGAAGAGA+TGG + chr2.2:4456087-4456106 MS.gene052043:CDS 50.0%
TCGAAGATCGGAAGAGATGG+CGG + chr2.2:4456090-4456109 MS.gene052043:CDS 50.0%
TGGAAGGGGGTCTCTAAATG+GGG + chr2.2:4455542-4455561 MS.gene052043:intron 50.0%
! TCCAAGCTGAGGCACCTATA+TGG - chr2.2:4454937-4454956 None:intergenic 50.0%
!! GATGGTGGAAGCTGGTTGAT+AGG + chr2.2:4453893-4453912 MS.gene052043:CDS 50.0%
!! TCTTTGGCTGGCTTGTCTAC+TGG + chr2.2:4453997-4454016 MS.gene052043:CDS 50.0%
CCACGTCCTTCCCCGAAAAT+CGG + chr2.2:4453052-4453071 MS.gene052043:CDS 55.0%
CCTCAGCTTGGAGCAGTAAG+CGG + chr2.2:4454945-4454964 MS.gene052043:CDS 55.0%
CGGAGGAAGAATTCGACTGC+AGG + chr2.2:4453232-4453251 MS.gene052043:CDS 55.0%
GCAGTAAGCGGTAGTAGCGA+TGG + chr2.2:4454957-4454976 MS.gene052043:CDS 55.0%
GCCATATAGGTGCCTCAGCT+TGG + chr2.2:4454933-4454952 MS.gene052043:intron 55.0%
GGAAGGGGGTCTCTAAATGG+GGG + chr2.2:4455543-4455562 MS.gene052043:intron 55.0%
! CAAGGACTGGTGTAGCTGGT+AGG + chr2.2:4454805-4454824 MS.gene052043:CDS 55.0%
!! AGGAGTCCAGGAGGTGTTGA+AGG + chr2.2:4454825-4454844 MS.gene052043:CDS 55.0%
!! CGATTTTCGGGGAAGGACGT+GGG - chr2.2:4453054-4453073 None:intergenic 55.0%
!!! GCTGTCGCTGCTGTTTTTCC+CGG + chr2.2:4453727-4453746 MS.gene052043:CDS 55.0%
CCGCTTACTGCTCCAAGCTG+AGG - chr2.2:4454948-4454967 None:intergenic 60.0%
GGTGTAGCTGGTAGGAGTCC+AGG + chr2.2:4454813-4454832 MS.gene052043:CDS 60.0%
GTAGCTGGTAGGAGTCCAGG+AGG + chr2.2:4454816-4454835 MS.gene052043:CDS 60.0%
TTCGAACCGCTCCAACTCGG+CGG - chr2.2:4456075-4456094 None:intergenic 60.0%
! GCTGCAAGGACTGGTGTAGC+TGG + chr2.2:4454801-4454820 MS.gene052043:CDS 60.0%
!! CCGATTTTCGGGGAAGGACG+TGG - chr2.2:4453055-4453074 None:intergenic 60.0%
AATGGGGGAACGTGCTCCGC+AGG + chr2.2:4453669-4453688 MS.gene052043:intron 65.0%
CCAACTCGGCGGAGGCTTAG+TGG - chr2.2:4456064-4456083 None:intergenic 65.0%
CCACTAAGCCTCCGCCGAGT+TGG + chr2.2:4456061-4456080 MS.gene052043:CDS 65.0%
! AAGCCTCCGCCGAGTTGGAG+CGG + chr2.2:4456066-4456085 MS.gene052043:CDS 65.0%
!! GGAAGAGATGGCGGAGCGTG+CGG + chr2.2:4456099-4456118 MS.gene052043:CDS 65.0%
GAACCGCTCCAACTCGGCGG+AGG - chr2.2:4456072-4456091 None:intergenic 70.0%
TGCGGCGCGCCGAGGAAGAT+CGG + chr2.2:4456117-4456136 MS.gene052043:CDS 70.0%
! GCGGAGCGTGCGGCGCGCCG+AGG + chr2.2:4456109-4456128 MS.gene052043:CDS 90.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 4452824 4456198 4452824 ID=MS.gene052043
chr2.2 mRNA 4452824 4456198 4452824 ID=MS.gene052043.t1;Parent=MS.gene052043
chr2.2 exon 4452824 4453490 4452824 ID=MS.gene052043.t1.exon1;Parent=MS.gene052043.t1
chr2.2 CDS 4452824 4453490 4452824 ID=cds.MS.gene052043.t1;Parent=MS.gene052043.t1
chr2.2 exon 4453725 4454860 4453725 ID=MS.gene052043.t1.exon2;Parent=MS.gene052043.t1
chr2.2 CDS 4453725 4454860 4453725 ID=cds.MS.gene052043.t1;Parent=MS.gene052043.t1
chr2.2 exon 4454942 4454992 4454942 ID=MS.gene052043.t1.exon3;Parent=MS.gene052043.t1
chr2.2 CDS 4454942 4454992 4454942 ID=cds.MS.gene052043.t1;Parent=MS.gene052043.t1
chr2.2 exon 4455983 4456198 4455983 ID=MS.gene052043.t1.exon4;Parent=MS.gene052043.t1
chr2.2 CDS 4455983 4456198 4455983 ID=cds.MS.gene052043.t1;Parent=MS.gene052043.t1
Gene Sequence

>MS.gene052043

ATGGATTCTTCTATTATTATGGCTAACACAATTCAAGACCCTAATAATGAAATGGAATTTGAATCACATGAAGCTGCATATTCATTTTACAAAGAATATGCAAAATCAGCAGGGTTTGGTACTGCTAAGTTAAGTAGTCGCCGATCTAGGGCATCGAAAGAATTCATCGATGCGAAATTTTCGTGTATTAGATATGGTAATAAACAACAATCGGATGATGCGATTAACCCACGTCCTTCCCCGAAAATCGGTTGTAAAGCAAGTATGCATGTGAAGAGAAGACAGGATGGTAAATGGTATGTTTATAGTTTTGTTAAGGAGCATAATCACGAGCTTTTACCTGCTCAAGCTCATTTTTTTCGGAGTCATAGGAATAATGATACGTTGAGTAATGATGTTCGGATGAGACGGAGGAAGAATTCGACTGCAGGTGGTGGTAAGTTGTTTAGCGCGTATCAGAATATTGATTGTTTGGAGAATTTGATGAATCGTCAACAAGATAAAGGGCGGAGTTTGGTTTTAGAACCGGGGAATGCTCAATTGCTTCTTGAATTGTTTATGCATATGCAGGAAGAGAATCCGAAGTTCTTTTATGCGATTGATTTGAATGAAGAGCATCGGCTTAGAAATGTGTTCTGGGTTGATTCTAAAGGGTTGGAGGATTTTGGTTATTTTTCTGATGTTGTTTCTTTTGACACAACATATTTCACAAGCAAGTATAAGATACCGTTGGTGCTTTTTGTTGGAGTTAACCATCATGTTCAACCAACATTGCTTGGATGTGCATTGATAGCTGATGAGACTGTATTTACTTTTGTGTGGTTACTGCAAACATGGTTTGTAGCAATGGGGGAACGTGCTCCGCAGGTGATTCTAACTGACCAAAATGATGCTATTAAAGCTGCTGTCGCTGCTGTTTTTCCCGGAACACGTCATTGTTTTTGTTTGTGGCATGTTTTGGAAAAGATACCGAAACAGCTTGAGTTCTTAAGTACATGGCATGATAGCTTTATGGAAAAGTTCAACAAATGTATATATCAATCATGGACAGAGGAGCAATTTGAAAAGAGATGGTGGAAGCTGGTTGATAGGTTTAAACTTAGAGATGTTAAGTGGGTTCAAACCTTGTATGATGATCGTGCATGTTGGGTGCCAACGTTTATGAAGGATATTTCTTTGGCTGGCTTGTCTACTGGCTCGCGCTTTGAAAGTTTAAATTCTATTTTTGACAGATATATCCAAGTTGATACTTCATTAAGACAATTTATAGATCAGTACCAATTGATTCTTGAAGATAGAGATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTAAAGTCACCTTCCCCTTTCGAAAAACAACTGCTGTTAGTTTATACTCATGAAATCTATCAAAAGTTTCAGTTCGAGGTTTTGGGTGCTTCTGCTTGCCATCTAAAGAAAGAAAATGATGGCGTGATTACTACTTATGATGTGAAAGACTTCGAAAATAATCAGAACTACATGGTAGAATGGAACACATCAAACTCGGATATATCCTGTTCCTGTCACTTGTTTGAATATAAAGGTTACCTATGTAGACATGCAATTGTTGTTCTACAAATGTCTGGTGTTTTTAGCATCCCGCCAAAGTACATATTGAAAAGATGGACAAACGTCGCTTTAAGTAGGTATCCTATTGGTGAAAACTTGGAAGAGGTTCAATCCAAGGTCCGGAGATTAAATGATTTATGTAGACGAGCCATAATATTGGGTGAAGAAGGTTCTTTATCCCAAGAAAGTTACTACATGGCTTTAAGTTCCTTAAGCGAGGCTCTAAAGCAATGTACGAATTTGAACAACTCTGTTGAGAATGCAGCCTTAGCTACCCATATTGGTTGCAATGTTGAAGAAGAGTATCAATCTATTATACCATCTAACGATAAGGTCTCCGATCCGAAAATGAATACGAGTAAGAAGGCTGCAAGGACTGGTGTAGCTGGTAGGAGTCCAGGAGGTGTTGAAGGAAGTAAGGGAAAGGTTGGTGACTTTTGTGATTACTGATTGACCTCCTTGTACTCTTAAAATTGTCTCTGACTTGGCATTCTTTATGCCATATAGGTGCCTCAGCTTGGAGCAGTAAGCGGTAGTAGCGATGGCTTTCAACAAATGGTATGTTATGCCCTGACTTTTTCTATTGCGTTCAAATTTACAATAATAAGTTCTGATAATTTATCCCCTTAGTTTTGTCTAAATGCCATTAACCTCCCCTTTCATTACATTCTGTCAGATTTCTGTTAGAAGAAAGAAAATTCTTTAATCTTCGAAACCTTTTCGTTTTCCCTTACTGGTTTAGATTTTGGAGAAATTGAAACGCTTAGATATTTGGAGGACTTATAATGCTTAATATGTTGACTGGTTCATTTAGTTTGGAAGACATATTTTTGTAGTTTGGAAGACATCAAAATTACTACTTCAGTTTTGGAGTACTTTTTAAGTTTATTTTGTCCAATTTTCGTTGGTTATTTTGTCTCAAAGTTAATTGGTTTAAATTATATAGCAGCTGTCATATGCTAAAATACCATCTTTGAAAACAGTTTTTTTGGTTCCAAAATGGTTGCTATCATGTAGAAAATTGATGTTGTTGTGTGAATTTGGAGAAAACATAGTCAAGCGTTAATGTCGTAGTCATGTTGTCAAGTGTTAAAAAAAAAACGTGTTTGGAAGGGGGTCTCTAAATGGGGGAGTCAAGCTTGTTGTTGAATAATATTGGAAGCATGCAACTCTTACCGGTTCAATTTGAGTGGGTAATTTAACTTCTTCAAAAAAAATATATTGGGAGCATGTGATTTTACTGTGATGTTTTGTCATTTTTCTTTTTTAGGTTATTGTCATTATTTTTTTTTTTGTATTATAACGGAGAAACAATTTTTTTTTGTATTATAACGGAGAAACAAACAGTGTTAATGAAGAAGGGAGGTATTTGTGTATTTGATGAGAACTTAGGAGTTAGTGCATATTTTAAAACTAAAACGGGTGTTTGTGTCATTTAAAGAGACCTCATAGGACGTGAGTGTGATTTCCTCTTCATCAAATTTCATAAAATTGCTCATTTATTGAGATTGAACAGAATACCATAAACAATTTAAAATCAAACAAAAGGAAAACCAAGGAAACAAAGATGCTAGGCAAGGTTGTCGGGATCGAGATATAAATCGTGAGATCGTACGATCTCACGCGCCACTAAGCCTCCGCCGAGTTGGAGCGGTTCGAAGATCGGAAGAGATGGCGGAGCGTGCGGCGCGCCGAGGAAGATCGGAAAATCGTGAAATCGCCGCGTTTGTTCGCATGACAGAAGAATCATGTGAAGGCGTGTAG
Protein sequence

>MS.gene052043.t1

MDSSIIMANTIQDPNNEMEFESHEAAYSFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRNNDTLSNDVRMRRRKNSTAGGGKLFSAYQNIDCLENLMNRQQDKGRSLVLEPGNAQLLLELFMHMQEENPKFFYAIDLNEEHRLRNVFWVDSKGLEDFAAVAAVFPGTRHCFCLWHVLEKIPKQLEFLSTWHDSFMEKFNKCIYQSWTEEQFEKRWWKLVDRFKLRDVKWVQTLYDDRACWVPTFMKDISLAGLSTGSRFESLNSIFDRYIQVDTSLRQFIDQYQLILEDRDEEEAKANFDAWHETPELKSPSPFEKQLLLVYTHEIYQKFQFEVLGASACHLKKENDGVITTYDVKDFENNQNYMVEWNTSNSDISCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILKRWTNVALSRYPIGENLEEVQSKVRRLNDLCRRAIILGEEGSLSQESYYMALSSLSEALKQCTNLNNSVENAALATHIGCNVEEEYQSIIPSNDKVSDPKMNTSKKAARTGVAGRSPGGVEGSKGKVPQLGAVSGSSDGFQQMENQGNKDARQGCRDRDINREIVRSHAPLSLRRVGAVRRSEEMAERAARRGRSENREIAAFVRMTEESCEGV