Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05205.t1 | XP_013454922.1 | 86.5 | 520 | 67 | 2 | 1 | 518 | 1 | 519 | 4.70E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05205.t1 | Q7XJK8 | 28.6 | 259 | 177 | 4 | 6 | 258 | 2 | 258 | 1.2e-17 | 92.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05205.t1 | A0A072USW1 | 86.5 | 520 | 67 | 2 | 1 | 518 | 1 | 519 | 3.4e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05205.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05205.t1 | MTR_4g019670 | 86.538 | 520 | 67 | 2 | 1 | 518 | 1 | 519 | 0.0 | 870 |
| MS.gene05205.t1 | MTR_7g106510 | 84.231 | 520 | 63 | 4 | 1 | 518 | 1 | 503 | 0.0 | 838 |
| MS.gene05205.t1 | MTR_3g093900 | 43.441 | 587 | 246 | 11 | 1 | 518 | 1 | 570 | 5.13e-133 | 398 |
| MS.gene05205.t1 | MTR_8g467500 | 48.746 | 279 | 133 | 3 | 13 | 285 | 13 | 287 | 2.98e-63 | 208 |
| MS.gene05205.t1 | MTR_5g075380 | 31.847 | 157 | 106 | 1 | 7 | 162 | 4 | 160 | 3.78e-22 | 93.6 |
| MS.gene05205.t1 | MTR_3g466980 | 32.121 | 165 | 108 | 2 | 1 | 164 | 1 | 162 | 4.05e-22 | 95.1 |
| MS.gene05205.t1 | MTR_8g036130 | 38.168 | 131 | 79 | 1 | 4 | 132 | 1 | 131 | 5.41e-22 | 95.5 |
| MS.gene05205.t1 | MTR_4g031910 | 34.434 | 212 | 117 | 5 | 1 | 196 | 1 | 206 | 8.46e-20 | 89.0 |
| MS.gene05205.t1 | MTR_4g032620 | 34.426 | 122 | 80 | 0 | 6 | 127 | 3 | 124 | 1.77e-19 | 87.8 |
| MS.gene05205.t1 | MTR_3g466830 | 33.333 | 150 | 99 | 1 | 6 | 154 | 2 | 151 | 1.04e-18 | 83.6 |
| MS.gene05205.t1 | MTR_2g016210 | 29.655 | 145 | 101 | 1 | 7 | 150 | 4 | 148 | 2.81e-18 | 84.7 |
| MS.gene05205.t1 | MTR_3g466890 | 30.380 | 158 | 109 | 1 | 6 | 162 | 2 | 159 | 5.60e-17 | 79.0 |
| MS.gene05205.t1 | MTR_4g032260 | 41.053 | 95 | 56 | 0 | 38 | 132 | 35 | 129 | 2.45e-16 | 77.0 |
| MS.gene05205.t1 | MTR_3g065100 | 37.607 | 117 | 73 | 0 | 6 | 122 | 3 | 119 | 3.19e-16 | 78.6 |
| MS.gene05205.t1 | MTR_2g035610 | 37.600 | 125 | 75 | 1 | 1 | 125 | 1 | 122 | 9.78e-16 | 73.9 |
| MS.gene05205.t1 | MTR_4g028800 | 44.928 | 69 | 36 | 1 | 7 | 75 | 4 | 70 | 1.58e-15 | 71.6 |
| MS.gene05205.t1 | MTR_3g031240 | 29.060 | 117 | 83 | 0 | 6 | 122 | 3 | 119 | 2.04e-15 | 75.1 |
| MS.gene05205.t1 | MTR_4g032290 | 30.968 | 155 | 88 | 3 | 38 | 175 | 35 | 187 | 2.64e-15 | 75.9 |
| MS.gene05205.t1 | MTR_1g090710 | 32.407 | 108 | 72 | 1 | 6 | 113 | 3 | 109 | 2.78e-15 | 73.9 |
| MS.gene05205.t1 | MTR_3g031100 | 29.060 | 117 | 83 | 0 | 6 | 122 | 3 | 119 | 2.85e-15 | 75.9 |
| MS.gene05205.t1 | MTR_5g047580 | 33.333 | 120 | 76 | 2 | 1 | 120 | 1 | 116 | 2.18e-14 | 71.2 |
| MS.gene05205.t1 | MTR_4g063790 | 28.125 | 160 | 104 | 4 | 1 | 155 | 1 | 154 | 2.97e-14 | 71.2 |
| MS.gene05205.t1 | MTR_3g466900 | 31.783 | 129 | 87 | 1 | 35 | 162 | 2 | 130 | 7.86e-14 | 68.9 |
| MS.gene05205.t1 | MTR_1g077390 | 27.778 | 144 | 95 | 3 | 6 | 141 | 3 | 145 | 1.70e-13 | 68.6 |
| MS.gene05205.t1 | MTR_1g090783 | 25.517 | 145 | 107 | 1 | 6 | 150 | 2 | 145 | 8.49e-13 | 66.6 |
| MS.gene05205.t1 | MTR_3g466930 | 34.109 | 129 | 84 | 1 | 35 | 162 | 2 | 130 | 1.03e-12 | 65.9 |
| MS.gene05205.t1 | MTR_1g077300 | 36.111 | 108 | 68 | 1 | 6 | 113 | 3 | 109 | 1.36e-12 | 66.2 |
| MS.gene05205.t1 | MTR_1g090697 | 30.973 | 113 | 74 | 2 | 1 | 113 | 1 | 109 | 4.28e-12 | 64.7 |
| MS.gene05205.t1 | MTR_1g084950 | 33.333 | 138 | 83 | 3 | 1 | 133 | 1 | 134 | 3.29e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05205.t1 | AT1G65300 | 28.736 | 261 | 174 | 6 | 6 | 258 | 2 | 258 | 2.83e-21 | 94.4 |
| MS.gene05205.t1 | AT3G05860 | 31.788 | 151 | 98 | 3 | 1 | 150 | 1 | 147 | 1.63e-18 | 85.5 |
| MS.gene05205.t1 | AT3G05860 | 31.788 | 151 | 98 | 3 | 1 | 150 | 1 | 147 | 1.98e-18 | 85.5 |
| MS.gene05205.t1 | AT3G05860 | 31.788 | 151 | 98 | 3 | 1 | 150 | 1 | 147 | 4.87e-18 | 83.2 |
| MS.gene05205.t1 | AT2G40210 | 27.528 | 178 | 124 | 3 | 4 | 181 | 1 | 173 | 2.19e-17 | 84.3 |
| MS.gene05205.t1 | AT2G28700 | 32.479 | 117 | 79 | 0 | 4 | 120 | 1 | 117 | 3.95e-16 | 80.1 |
| MS.gene05205.t1 | AT1G31630 | 33.043 | 115 | 76 | 1 | 6 | 120 | 2 | 115 | 4.16e-15 | 77.0 |
| MS.gene05205.t1 | AT5G26650 | 30.702 | 114 | 79 | 0 | 7 | 120 | 2 | 115 | 7.74e-15 | 76.6 |
| MS.gene05205.t1 | AT1G65330 | 34.513 | 113 | 74 | 0 | 8 | 120 | 4 | 116 | 1.57e-14 | 74.3 |
| MS.gene05205.t1 | AT1G31640 | 33.043 | 115 | 74 | 2 | 6 | 120 | 4 | 115 | 1.97e-14 | 75.9 |
| MS.gene05205.t1 | AT5G27960 | 29.323 | 133 | 92 | 2 | 7 | 139 | 2 | 132 | 2.00e-14 | 74.7 |
| MS.gene05205.t1 | AT5G48670 | 35.043 | 117 | 76 | 0 | 6 | 122 | 3 | 119 | 2.78e-13 | 71.2 |
| MS.gene05205.t1 | AT1G22590 | 27.723 | 101 | 73 | 0 | 6 | 106 | 3 | 103 | 4.71e-13 | 67.8 |
| MS.gene05205.t1 | AT5G06500 | 29.252 | 147 | 97 | 3 | 6 | 149 | 3 | 145 | 5.13e-13 | 69.3 |
| MS.gene05205.t1 | AT5G26630 | 32.584 | 178 | 111 | 5 | 1 | 177 | 1 | 170 | 2.88e-12 | 66.6 |
| MS.gene05205.t1 | AT2G15660 | 28.070 | 171 | 106 | 5 | 5 | 171 | 3 | 160 | 7.05e-11 | 63.2 |
Find 107 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCTCCTCAAGGATATTT+TGG | 0.199048 | 6.4:-52599214 | MS.gene05205:CDS |
| AACTTTGGTGGAAATATTAA+TGG | 0.199273 | 6.4:-52598740 | MS.gene05205:CDS |
| AGTATTATTCTCAATCAATT+TGG | 0.203967 | 6.4:+52600161 | None:intergenic |
| GTTTCTTCCTCGAGGAAATA+TGG | 0.206533 | 6.4:-52599311 | MS.gene05205:CDS |
| GAAAATGAAGAGACTTTAAT+TGG | 0.215642 | 6.4:-52599865 | MS.gene05205:CDS |
| TCAACTCAAACTTGGTTATT+AGG | 0.227722 | 6.4:+52599986 | None:intergenic |
| GATTGTCACATGCTCCATTT+TGG | 0.244676 | 6.4:+52600095 | None:intergenic |
| TTGTTTCCTCAAGAAAATTT+TGG | 0.246591 | 6.4:-52598992 | MS.gene05205:CDS |
| AATGATGATGTGATGCATTA+TGG | 0.251797 | 6.4:-52599649 | MS.gene05205:CDS |
| GAAAGGGTTGTTCACCAAAA+TGG | 0.296295 | 6.4:-52600109 | MS.gene05205:CDS |
| CCAACAACCCTTGTCAGATT+TGG | 0.318947 | 6.4:-52599599 | MS.gene05205:CDS |
| GAGGCATGTGCGGTTGTGTT+TGG | 0.339289 | 6.4:-52600060 | MS.gene05205:CDS |
| AATTGTGTTGACAATAATTA+CGG | 0.345614 | 6.4:-52598692 | MS.gene05205:CDS |
| GATAACAATCAAGCTGATTT+CGG | 0.366510 | 6.4:-52599481 | MS.gene05205:CDS |
| AAACCACCTTTAGAACATTC+AGG | 0.366858 | 6.4:+52599427 | None:intergenic |
| AGGCATGTGCGGTTGTGTTT+GGG | 0.389221 | 6.4:-52600059 | MS.gene05205:CDS |
| GTGATACAAAACCATCAATA+TGG | 0.392745 | 6.4:-52600032 | MS.gene05205:CDS |
| CAAGTTTGAGTTGATGTCAT+TGG | 0.395004 | 6.4:-52599977 | MS.gene05205:CDS |
| GTAGGAGATGGCCATATTGA+TGG | 0.402716 | 6.4:+52600021 | None:intergenic |
| TTTGAAGTTCAAGAAAACTT+TGG | 0.402903 | 6.4:-52598857 | MS.gene05205:CDS |
| TTTCTTCCTCGAGGAAATAT+GGG | 0.416198 | 6.4:-52599310 | MS.gene05205:CDS |
| TTTGAAGGTCAAGAAAACTT+TGG | 0.433208 | 6.4:-52599082 | MS.gene05205:CDS |
| GGTGGAAATATTAATGGAGA+TGG | 0.433981 | 6.4:-52598734 | MS.gene05205:CDS |
| CATTATGGGGTTAACATGTA+TGG | 0.436187 | 6.4:-52599634 | MS.gene05205:CDS |
| ATGATGATGTGATGCATTAT+GGG | 0.436248 | 6.4:-52599648 | MS.gene05205:CDS |
| TGTGCGGTTGTGTTTGGGCC+AGG | 0.446264 | 6.4:-52600054 | MS.gene05205:CDS |
| CCAAATCTGACAAGGGTTGT+TGG | 0.453546 | 6.4:+52599599 | None:intergenic |
| ATTGTGTTGACAATAATTAC+GGG | 0.458017 | 6.4:-52598691 | MS.gene05205:CDS |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 6.4:-52599193 | MS.gene05205:CDS |
| TTTCATCAAAATAACTTTGG+TGG | 0.463345 | 6.4:-52598752 | MS.gene05205:CDS |
| ATATTAATGGAGATGGGATG+TGG | 0.470498 | 6.4:-52598727 | MS.gene05205:CDS |
| TACCACATGCAAATCTGAAT+GGG | 0.471278 | 6.4:-52599135 | MS.gene05205:CDS |
| CAATGACATCAACTCAAACT+TGG | 0.473492 | 6.4:+52599978 | None:intergenic |
| CCACCACTTGCAGATCTTAG+TGG | 0.473546 | 6.4:-52599514 | MS.gene05205:CDS |
| TTGTCTAAAGTAAAAGATAT+TGG | 0.477866 | 6.4:+52599670 | None:intergenic |
| CTACCACATGCAAATCTGAA+TGG | 0.479159 | 6.4:-52599136 | MS.gene05205:CDS |
| TCAGATTTGGTCGAGAAAGT+TGG | 0.489176 | 6.4:-52599586 | MS.gene05205:CDS |
| CCATCACCTGAATGTTCTAA+AGG | 0.494916 | 6.4:-52599433 | MS.gene05205:CDS |
| ACAACATAGGTAGCAACATT+GGG | 0.499100 | 6.4:-52599276 | MS.gene05205:CDS |
| GAAGTTCAAGAAAACTTTGG+AGG | 0.499508 | 6.4:-52598854 | MS.gene05205:CDS |
| TACGGGAGCAACTTCAACCC+TGG | 0.503874 | 6.4:-52598674 | MS.gene05205:CDS |
| TAATAATACTCCTCCACCGT+TGG | 0.505689 | 6.4:-52599695 | MS.gene05205:CDS |
| GGGCATTTCATTAACAACAT+AGG | 0.507291 | 6.4:-52599289 | MS.gene05205:CDS |
| AATAATACTCCTCCACCGTT+GGG | 0.512582 | 6.4:-52599694 | MS.gene05205:CDS |
| GAAGGTCAAGAAAACTTTGG+AGG | 0.521372 | 6.4:-52599079 | MS.gene05205:CDS |
| CTTGCAGATCTTAGTGGTGG+TGG | 0.523729 | 6.4:-52599508 | MS.gene05205:CDS |
| CATCATATCAACACCACCAT+TGG | 0.524243 | 6.4:+52598778 | None:intergenic |
| GGTGGAGGAGTATTATTAAG+AGG | 0.525176 | 6.4:+52599700 | None:intergenic |
| GTGGAAATATTAATGGAGAT+GGG | 0.525265 | 6.4:-52598733 | MS.gene05205:CDS |
| GACAACTCTGGAAGTAGCAT+GGG | 0.529343 | 6.4:-52599541 | MS.gene05205:CDS |
| TGAGAATAATACTCGAAGAA+AGG | 0.533789 | 6.4:-52600151 | MS.gene05205:CDS |
| ATATCAACACCACCATTGGT+TGG | 0.533878 | 6.4:+52598782 | None:intergenic |
| AACAACATAGGTAGCAACAT+TGG | 0.541245 | 6.4:-52599277 | MS.gene05205:CDS |
| GATATTGGTCCCAACGGTGG+AGG | 0.557764 | 6.4:+52599685 | None:intergenic |
| TTTGATGACAGCACAGGTAG+CGG | 0.558301 | 6.4:-52599055 | MS.gene05205:CDS |
| TGACAACTCTGGAAGTAGCA+TGG | 0.558512 | 6.4:-52599542 | MS.gene05205:CDS |
| TGCTATAAGAGAAGATTGAA+AGG | 0.560605 | 6.4:-52600126 | MS.gene05205:CDS |
| CCTTTAGAACATTCAGGTGA+TGG | 0.562615 | 6.4:+52599433 | None:intergenic |
| AGATCACTAGAAAGATGTCT+AGG | 0.570407 | 6.4:-52599744 | MS.gene05205:CDS |
| CCATCACATGAAAATCATAG+TGG | 0.570433 | 6.4:-52599349 | MS.gene05205:CDS |
| AATATGGCCATCTCCTACAG+TGG | 0.576369 | 6.4:-52600016 | MS.gene05205:CDS |
| ATTAGGTCTTCAACCACTGT+AGG | 0.578611 | 6.4:+52600003 | None:intergenic |
| TTTATTCCGAAGAAAATCCA+GGG | 0.578991 | 6.4:+52598657 | None:intergenic |
| ACAGCACAGGTAGCGGCATG+TGG | 0.580655 | 6.4:-52599048 | MS.gene05205:CDS |
| GTAGGTGTGTTGCCTCCTCA+AGG | 0.582180 | 6.4:-52599223 | MS.gene05205:CDS |
| AACAATCAAGCTGATTTCGG+TGG | 0.584600 | 6.4:-52599478 | MS.gene05205:CDS |
| GACAATCTTATGTGGTATTG+AGG | 0.594613 | 6.4:-52600079 | MS.gene05205:CDS |
| GCTATAAGAGAAGATTGAAA+GGG | 0.594807 | 6.4:-52600125 | MS.gene05205:CDS |
| AAAGTTGGTCAAATGAGCAA+TGG | 0.596150 | 6.4:-52599571 | MS.gene05205:CDS |
| TCTTCAACCACTGTAGGAGA+TGG | 0.603637 | 6.4:+52600009 | None:intergenic |
| CATGAAAATCCAACCAATGG+TGG | 0.608007 | 6.4:-52598791 | MS.gene05205:CDS |
| CCACATACAAATCCTTGTGT+TGG | 0.608664 | 6.4:-52598911 | MS.gene05205:CDS |
| ATAATATATGTAGCAACATG+TGG | 0.610672 | 6.4:-52598823 | MS.gene05205:CDS |
| AATGGTTTCAATGACAACTC+TGG | 0.612431 | 6.4:-52599553 | MS.gene05205:CDS |
| TTCTCGACCAAATCTGACAA+GGG | 0.615705 | 6.4:+52599592 | None:intergenic |
| GTAAAAGATATTGGTCCCAA+CGG | 0.615899 | 6.4:+52599679 | None:intergenic |
| TTTCTCGACCAAATCTGACA+AGG | 0.620931 | 6.4:+52599591 | None:intergenic |
| TCACCTGAATGTTCTAAAGG+TGG | 0.623130 | 6.4:-52599430 | MS.gene05205:CDS |
| CCAACACAAGGATTTGTATG+TGG | 0.626092 | 6.4:+52598911 | None:intergenic |
| CATGATATGTTTCTTCCTCG+AGG | 0.626167 | 6.4:-52599319 | MS.gene05205:CDS |
| CCACATGAAAATCCAACCAA+TGG | 0.626558 | 6.4:-52598794 | MS.gene05205:CDS |
| GAAAATCCTAGTGGTGGTGT+AGG | 0.627650 | 6.4:-52599241 | MS.gene05205:CDS |
| AAAGATATTGGTCCCAACGG+TGG | 0.635582 | 6.4:+52599682 | None:intergenic |
| GTTGATGTGTTGTCTCATCA+AGG | 0.635762 | 6.4:-52598884 | MS.gene05205:CDS |
| ATGCATCAAATTGAAAACGA+AGG | 0.641960 | 6.4:-52599835 | MS.gene05205:CDS |
| TTCTTCCTCGAGGAAATATG+GGG | 0.649766 | 6.4:-52599309 | MS.gene05205:CDS |
| ACACAAGGATTTGTATGTGG+TGG | 0.650459 | 6.4:+52598914 | None:intergenic |
| AACACACCTACACCACCACT+AGG | 0.650603 | 6.4:+52599235 | None:intergenic |
| CCACCACTCGAACTTGAATG+TGG | 0.651850 | 6.4:+52599022 | None:intergenic |
| CCTCCAAAATATCCTTGAGG+AGG | 0.656666 | 6.4:+52599211 | None:intergenic |
| ACATTACAGGTAGAAAGACA+TGG | 0.657368 | 6.4:-52599162 | MS.gene05205:CDS |
| ATGTGGTATTGAGGCATGTG+CGG | 0.658684 | 6.4:-52600070 | MS.gene05205:CDS |
| CCACATTCAAGTTCGAGTGG+TGG | 0.659071 | 6.4:-52599022 | MS.gene05205:CDS |
| TGACCTCCAAAATATCCTTG+AGG | 0.660910 | 6.4:+52599208 | None:intergenic |
| TTCCCATTCAGATTTGCATG+TGG | 0.661550 | 6.4:+52599133 | None:intergenic |
| GAGCATGTGACAATCTTATG+TGG | 0.668241 | 6.4:-52600087 | MS.gene05205:CDS |
| TCACATGAAAATCCTAGTGG+TGG | 0.674534 | 6.4:-52599247 | MS.gene05205:CDS |
| TCACATGAAAATCATAGTGG+TGG | 0.674534 | 6.4:-52599346 | MS.gene05205:CDS |
| CCACTAAGATCTGCAAGTGG+TGG | 0.677665 | 6.4:+52599514 | None:intergenic |
| CAATCACATGAAAATCCTAG+TGG | 0.684612 | 6.4:-52599250 | MS.gene05205:CDS |
| ATACCACATTCAAGTTCGAG+TGG | 0.696870 | 6.4:-52599025 | MS.gene05205:CDS |
| CCACTTGCAGATCTTAGTGG+TGG | 0.697583 | 6.4:-52599511 | MS.gene05205:CDS |
| ACATCAACATCACCAACACA+AGG | 0.703626 | 6.4:+52598899 | None:intergenic |
| ACAACTCTGGAAGTAGCATG+GGG | 0.705248 | 6.4:-52599540 | MS.gene05205:CDS |
| TGATGATGTGATGCATTATG+GGG | 0.707261 | 6.4:-52599647 | MS.gene05205:CDS |
| CCACCACTAAGATCTGCAAG+TGG | 0.711697 | 6.4:+52599511 | None:intergenic |
| AAATGCCCCATATTTCCTCG+AGG | 0.740275 | 6.4:+52599304 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTCATCAAAATAACTT+TGG | - | chr6.4:52600095-52600114 | MS.gene05205:CDS | 15.0% |
| !! | AGTATTATTCTCAATCAATT+TGG | + | chr6.4:52598692-52598711 | None:intergenic | 20.0% |
| !!! | AATTGTGTTGACAATAATTA+CGG | - | chr6.4:52600158-52600177 | MS.gene05205:CDS | 20.0% |
| !!! | TTGTCTAAAGTAAAAGATAT+TGG | + | chr6.4:52599183-52599202 | None:intergenic | 20.0% |
| !!! | TTTCTTTAATGATCTTTTCA+AGG | + | chr6.4:52598969-52598988 | None:intergenic | 20.0% |
| ! | AACTTTGGTGGAAATATTAA+TGG | - | chr6.4:52600110-52600129 | MS.gene05205:CDS | 25.0% |
| ! | ATAATATATGTAGCAACATG+TGG | - | chr6.4:52600027-52600046 | MS.gene05205:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+TGG | - | chr6.4:52598985-52599004 | MS.gene05205:CDS | 25.0% |
| ! | TTTCATCAAAATAACTTTGG+TGG | - | chr6.4:52600098-52600117 | MS.gene05205:CDS | 25.0% |
| !! | ATTGTGTTGACAATAATTAC+GGG | - | chr6.4:52600159-52600178 | MS.gene05205:CDS | 25.0% |
| !! | TTGTTTCCTCAAGAAAATTT+TGG | - | chr6.4:52599858-52599877 | MS.gene05205:CDS | 25.0% |
| !! | TTTGAAGTTCAAGAAAACTT+TGG | - | chr6.4:52599993-52600012 | MS.gene05205:CDS | 25.0% |
| !!! | AACGTTTTTTCAAGACAATT+TGG | - | chr6.4:52599452-52599471 | MS.gene05205:CDS | 25.0% |
| !!! | AATTGGTCAGTCTTATTTTT+TGG | + | chr6.4:52598907-52598926 | None:intergenic | 25.0% |
| ATGCATCAAATTGAAAACGA+AGG | - | chr6.4:52599015-52599034 | MS.gene05205:CDS | 30.0% | |
| GCTATAAGAGAAGATTGAAA+GGG | - | chr6.4:52598725-52598744 | MS.gene05205:CDS | 30.0% | |
| GTGATACAAAACCATCAATA+TGG | - | chr6.4:52598818-52598837 | MS.gene05205:CDS | 30.0% | |
| GTGGAAATATTAATGGAGAT+GGG | - | chr6.4:52600117-52600136 | MS.gene05205:CDS | 30.0% | |
| TATCCTCCAAAAAAGTCAAT+TGG | + | chr6.4:52598924-52598943 | None:intergenic | 30.0% | |
| TCAACTCAAACTTGGTTATT+AGG | + | chr6.4:52598867-52598886 | None:intergenic | 30.0% | |
| TGAGAATAATACTCGAAGAA+AGG | - | chr6.4:52598699-52598718 | MS.gene05205:CDS | 30.0% | |
| TGCTATAAGAGAAGATTGAA+AGG | - | chr6.4:52598724-52598743 | MS.gene05205:CDS | 30.0% | |
| TTTGAAGGTCAAGAAAACTT+TGG | - | chr6.4:52599768-52599787 | MS.gene05205:CDS | 30.0% | |
| ! | AATGATGATGTGATGCATTA+TGG | - | chr6.4:52599201-52599220 | MS.gene05205:CDS | 30.0% |
| ! | ATGATGATGTGATGCATTAT+GGG | - | chr6.4:52599202-52599221 | MS.gene05205:CDS | 30.0% |
| ! | GATAACAATCAAGCTGATTT+CGG | - | chr6.4:52599369-52599388 | MS.gene05205:CDS | 30.0% |
| ! | TGACCTTCAAAATTTTCTTG+AGG | + | chr6.4:52599759-52599778 | None:intergenic | 30.0% |
| ! | TTTCCTCAAGAAAATTTTGG+AGG | - | chr6.4:52599861-52599880 | MS.gene05205:CDS | 30.0% |
| !! | GGATGATTTTGATAGTATCA+TGG | - | chr6.4:52599473-52599492 | MS.gene05205:CDS | 30.0% |
| !!! | ATTGACTTTTTTGGAGGATA+AGG | - | chr6.4:52598924-52598943 | MS.gene05205:CDS | 30.0% |
| !!! | TTGACTTTTTTGGAGGATAA+GGG | - | chr6.4:52598925-52598944 | MS.gene05205:CDS | 30.0% |
| AACAACATAGGTAGCAACAT+TGG | - | chr6.4:52599573-52599592 | MS.gene05205:CDS | 35.0% | |
| AATGGTTTCAATGACAACTC+TGG | - | chr6.4:52599297-52599316 | MS.gene05205:CDS | 35.0% | |
| ACAACATAGGTAGCAACATT+GGG | - | chr6.4:52599574-52599593 | MS.gene05205:CDS | 35.0% | |
| ACATTACAGGTAGAAAGACA+TGG | - | chr6.4:52599688-52599707 | MS.gene05205:CDS | 35.0% | |
| AGATCACTAGAAAGATGTCT+AGG | - | chr6.4:52599106-52599125 | MS.gene05205:CDS | 35.0% | |
| ATATTAATGGAGATGGGATG+TGG | - | chr6.4:52600123-52600142 | MS.gene05205:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | - | chr6.4:52599600-52599619 | MS.gene05205:CDS | 35.0% | |
| CAATGACATCAACTCAAACT+TGG | + | chr6.4:52598875-52598894 | None:intergenic | 35.0% | |
| CATTATGGGGTTAACATGTA+TGG | - | chr6.4:52599216-52599235 | MS.gene05205:CDS | 35.0% | |
| CCATCACATGAAAATCATAG+TGG | - | chr6.4:52599501-52599520 | MS.gene05205:CDS | 35.0% | |
| GAAGTTCAAGAAAACTTTGG+AGG | - | chr6.4:52599996-52600015 | MS.gene05205:CDS | 35.0% | |
| GACAATCTTATGTGGTATTG+AGG | - | chr6.4:52598771-52598790 | MS.gene05205:CDS | 35.0% | |
| GGGCATTTCATTAACAACAT+AGG | - | chr6.4:52599561-52599580 | MS.gene05205:CDS | 35.0% | |
| GGTGGAAATATTAATGGAGA+TGG | - | chr6.4:52600116-52600135 | MS.gene05205:CDS | 35.0% | |
| GTAAAAGATATTGGTCCCAA+CGG | + | chr6.4:52599174-52599193 | None:intergenic | 35.0% | |
| TACCACATGCAAATCTGAAT+GGG | - | chr6.4:52599715-52599734 | MS.gene05205:CDS | 35.0% | |
| TCACATGAAAATCATAGTGG+TGG | - | chr6.4:52599504-52599523 | MS.gene05205:CDS | 35.0% | |
| TTTCTTCCTCGAGGAAATAT+GGG | - | chr6.4:52599540-52599559 | MS.gene05205:CDS | 35.0% | |
| ! | AAAGTTGGTCAAATGAGCAA+TGG | - | chr6.4:52599279-52599298 | MS.gene05205:CDS | 35.0% |
| ! | CCACTATGATTTTCATGTGA+TGG | + | chr6.4:52599504-52599523 | None:intergenic | 35.0% |
| ! | CCTCCTCAAGAAAATTTTGA+AGG | - | chr6.4:52599753-52599772 | MS.gene05205:CDS | 35.0% |
| ! | CCTTCAAAATTTTCTTGAGG+AGG | + | chr6.4:52599756-52599775 | None:intergenic | 35.0% |
| ! | TGACCTCCAAAATTTTCTTG+AGG | + | chr6.4:52599867-52599886 | None:intergenic | 35.0% |
| ! | TGATGATGTGATGCATTATG+GGG | - | chr6.4:52599203-52599222 | MS.gene05205:CDS | 35.0% |
| !! | AAACCACCTTTAGAACATTC+AGG | + | chr6.4:52599426-52599445 | None:intergenic | 35.0% |
| !! | CAAGGTTTTGATGACATTAC+AGG | - | chr6.4:52599675-52599694 | MS.gene05205:CDS | 35.0% |
| !! | CAAGTTTGAGTTGATGTCAT+TGG | - | chr6.4:52598873-52598892 | MS.gene05205:CDS | 35.0% |
| !!! | ATTGATGGTTTTGTATCACC+TGG | + | chr6.4:52598817-52598836 | None:intergenic | 35.0% |
| !!! | GACTGACCAATTGACTTTTT+TGG | - | chr6.4:52598915-52598934 | MS.gene05205:CDS | 35.0% |
| !!! | GATTTCGGTGGTTTTGATAA+CGG | - | chr6.4:52599384-52599403 | MS.gene05205:CDS | 35.0% |
| !!! | TGACCAATTGACTTTTTTGG+AGG | - | chr6.4:52598918-52598937 | MS.gene05205:CDS | 35.0% |
| AATAATACTCCTCCACCGTT+GGG | - | chr6.4:52599156-52599175 | MS.gene05205:CDS | 40.0% | |
| ACACAAGGATTTGTATGTGG+TGG | + | chr6.4:52599939-52599958 | None:intergenic | 40.0% | |
| ACATCAACATCACCAACACA+AGG | + | chr6.4:52599954-52599973 | None:intergenic | 40.0% | |
| ATATCAACACCACCATTGGT+TGG | + | chr6.4:52600071-52600090 | None:intergenic | 40.0% | |
| ATTAGGTCTTCAACCACTGT+AGG | + | chr6.4:52598850-52598869 | None:intergenic | 40.0% | |
| CATCATATCAACACCACCAT+TGG | + | chr6.4:52600075-52600094 | None:intergenic | 40.0% | |
| CATGAAAATCCAACCAATGG+TGG | - | chr6.4:52600059-52600078 | MS.gene05205:CDS | 40.0% | |
| CATGATATGTTTCTTCCTCG+AGG | - | chr6.4:52599531-52599550 | MS.gene05205:CDS | 40.0% | |
| CCAACACAAGGATTTGTATG+TGG | + | chr6.4:52599942-52599961 | None:intergenic | 40.0% | |
| CCACATACAAATCCTTGTGT+TGG | - | chr6.4:52599939-52599958 | MS.gene05205:CDS | 40.0% | |
| CCACATGAAAATCCAACCAA+TGG | - | chr6.4:52600056-52600075 | MS.gene05205:CDS | 40.0% | |
| CCATCACCTGAATGTTCTAA+AGG | - | chr6.4:52599417-52599436 | MS.gene05205:CDS | 40.0% | |
| CTACCACATGCAAATCTGAA+TGG | - | chr6.4:52599714-52599733 | MS.gene05205:CDS | 40.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | - | chr6.4:52598741-52598760 | MS.gene05205:CDS | 40.0% | |
| GAAGGTCAAGAAAACTTTGG+AGG | - | chr6.4:52599771-52599790 | MS.gene05205:CDS | 40.0% | |
| GAGCATGTGACAATCTTATG+TGG | - | chr6.4:52598763-52598782 | MS.gene05205:CDS | 40.0% | |
| GTTGATGTGTTGTCTCATCA+AGG | - | chr6.4:52599966-52599985 | MS.gene05205:CDS | 40.0% | |
| GTTTCTTCCTCGAGGAAATA+TGG | - | chr6.4:52599539-52599558 | MS.gene05205:CDS | 40.0% | |
| TAATAATACTCCTCCACCGT+TGG | - | chr6.4:52599155-52599174 | MS.gene05205:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | - | chr6.4:52599603-52599622 | MS.gene05205:CDS | 40.0% | |
| TGACCTCCAAAATATCCTTG+AGG | + | chr6.4:52599645-52599664 | None:intergenic | 40.0% | |
| TTCCCATTCAGATTTGCATG+TGG | + | chr6.4:52599720-52599739 | None:intergenic | 40.0% | |
| TTCTCGACCAAATCTGACAA+GGG | + | chr6.4:52599261-52599280 | None:intergenic | 40.0% | |
| TTCTTCCTCGAGGAAATATG+GGG | - | chr6.4:52599541-52599560 | MS.gene05205:CDS | 40.0% | |
| TTTCTCGACCAAATCTGACA+AGG | + | chr6.4:52599262-52599281 | None:intergenic | 40.0% | |
| ! | AACAATCAAGCTGATTTCGG+TGG | - | chr6.4:52599372-52599391 | MS.gene05205:CDS | 40.0% |
| ! | ATACCACATTCAAGTTCGAG+TGG | - | chr6.4:52599825-52599844 | MS.gene05205:CDS | 40.0% |
| ! | CTTCAACCCTGGATTTTCTT+CGG | - | chr6.4:52600187-52600206 | MS.gene05205:CDS | 40.0% |
| ! | GATTGTCACATGCTCCATTT+TGG | + | chr6.4:52598758-52598777 | None:intergenic | 40.0% |
| ! | TCAGATTTGGTCGAGAAAGT+TGG | - | chr6.4:52599264-52599283 | MS.gene05205:CDS | 40.0% |
| ! | TTGCCTCCTCAAGGATATTT+TGG | - | chr6.4:52599636-52599655 | MS.gene05205:CDS | 40.0% |
| ! | TTGGTTGGATTTTCATGTGG+AGG | + | chr6.4:52600056-52600075 | None:intergenic | 40.0% |
| !! | CCATTGGTTGGATTTTCATG+TGG | + | chr6.4:52600059-52600078 | None:intergenic | 40.0% |
| !! | CCTTTAGAACATTCAGGTGA+TGG | + | chr6.4:52599420-52599439 | None:intergenic | 40.0% |
| !! | GGTGGAGGAGTATTATTAAG+AGG | + | chr6.4:52599153-52599172 | None:intergenic | 40.0% |
| !! | TCACCTGAATGTTCTAAAGG+TGG | - | chr6.4:52599420-52599439 | MS.gene05205:CDS | 40.0% |
| !!! | GGTGGTTTTGATAACGGAAT+GGG | - | chr6.4:52599390-52599409 | MS.gene05205:CDS | 40.0% |
| !!! | GTGGTTTTGATAACGGAATG+GGG | - | chr6.4:52599391-52599410 | MS.gene05205:CDS | 40.0% |
| AAAGATATTGGTCCCAACGG+TGG | + | chr6.4:52599171-52599190 | None:intergenic | 45.0% | |
| AAATGCCCCATATTTCCTCG+AGG | + | chr6.4:52599549-52599568 | None:intergenic | 45.0% | |
| AATATGGCCATCTCCTACAG+TGG | - | chr6.4:52598834-52598853 | MS.gene05205:CDS | 45.0% | |
| CCAAATCTGACAAGGGTTGT+TGG | + | chr6.4:52599254-52599273 | None:intergenic | 45.0% | |
| CCAACAACCCTTGTCAGATT+TGG | - | chr6.4:52599251-52599270 | MS.gene05205:CDS | 45.0% | |
| CCTCCAAAATATCCTTGAGG+AGG | + | chr6.4:52599642-52599661 | None:intergenic | 45.0% | |
| GGAGGTCAAAGCAACTTTCA+AGG | - | chr6.4:52599657-52599676 | MS.gene05205:CDS | 45.0% | |
| GTAGGAGATGGCCATATTGA+TGG | + | chr6.4:52598832-52598851 | None:intergenic | 45.0% | |
| TCTTCAACCACTGTAGGAGA+TGG | + | chr6.4:52598844-52598863 | None:intergenic | 45.0% | |
| ! | ACAACTCTGGAAGTAGCATG+GGG | - | chr6.4:52599310-52599329 | MS.gene05205:CDS | 45.0% |
| ! | ATGTGGTATTGAGGCATGTG+CGG | - | chr6.4:52598780-52598799 | MS.gene05205:CDS | 45.0% |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | - | chr6.4:52599609-52599628 | MS.gene05205:CDS | 45.0% |
| ! | GACAACTCTGGAAGTAGCAT+GGG | - | chr6.4:52599309-52599328 | MS.gene05205:CDS | 45.0% |
| ! | TGACAACTCTGGAAGTAGCA+TGG | - | chr6.4:52599308-52599327 | MS.gene05205:CDS | 45.0% |
| ! | TTTGATGACAGCACAGGTAG+CGG | - | chr6.4:52599795-52599814 | MS.gene05205:CDS | 45.0% |
| !! | CCTCCTCAAGGATATTTTGG+AGG | - | chr6.4:52599639-52599658 | MS.gene05205:CDS | 45.0% |
| !!! | CGGTGGTTTTGATAACGGAA+TGG | - | chr6.4:52599389-52599408 | MS.gene05205:CDS | 45.0% |
| AACACACCTACACCACCACT+AGG | + | chr6.4:52599618-52599637 | None:intergenic | 50.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | - | chr6.4:52598791-52598810 | MS.gene05205:CDS | 50.0% | |
| CCACCACTAAGATCTGCAAG+TGG | + | chr6.4:52599342-52599361 | None:intergenic | 50.0% | |
| CCACCACTCGAACTTGAATG+TGG | + | chr6.4:52599831-52599850 | None:intergenic | 50.0% | |
| CCACCACTTGCAGATCTTAG+TGG | - | chr6.4:52599336-52599355 | MS.gene05205:CDS | 50.0% | |
| CCACTAAGATCTGCAAGTGG+TGG | + | chr6.4:52599339-52599358 | None:intergenic | 50.0% | |
| CCACTTGCAGATCTTAGTGG+TGG | - | chr6.4:52599339-52599358 | MS.gene05205:CDS | 50.0% | |
| CTTGCAGATCTTAGTGGTGG+TGG | - | chr6.4:52599342-52599361 | MS.gene05205:CDS | 50.0% | |
| ! | CCACATTCAAGTTCGAGTGG+TGG | - | chr6.4:52599828-52599847 | MS.gene05205:CDS | 50.0% |
| !! | GGAGGTTTTGATGACAGCAC+AGG | - | chr6.4:52599789-52599808 | MS.gene05205:CDS | 50.0% |
| GAGGCATGTGCGGTTGTGTT+TGG | - | chr6.4:52598790-52598809 | MS.gene05205:CDS | 55.0% | |
| GATATTGGTCCCAACGGTGG+AGG | + | chr6.4:52599168-52599187 | None:intergenic | 55.0% | |
| GTAGGTGTGTTGCCTCCTCA+AGG | - | chr6.4:52599627-52599646 | MS.gene05205:CDS | 55.0% | |
| TACGGGAGCAACTTCAACCC+TGG | - | chr6.4:52600176-52600195 | MS.gene05205:CDS | 55.0% | |
| TGTGCGGTTGTGTTTGGGCC+AGG | - | chr6.4:52598796-52598815 | MS.gene05205:CDS | 60.0% | |
| ! | ACAGCACAGGTAGCGGCATG+TGG | - | chr6.4:52599802-52599821 | MS.gene05205:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 52598658 | 52600214 | 52598658 | ID=MS.gene05205 |
| chr6.4 | mRNA | 52598658 | 52600214 | 52598658 | ID=MS.gene05205.t1;Parent=MS.gene05205 |
| chr6.4 | exon | 52598658 | 52600214 | 52598658 | ID=MS.gene05205.t1.exon1;Parent=MS.gene05205.t1 |
| chr6.4 | CDS | 52598658 | 52600214 | 52598658 | ID=cds.MS.gene05205.t1;Parent=MS.gene05205.t1 |
| Gene Sequence |
| Protein sequence |
