AlfalfaGEDB | MS.gene052096

M. sativa cultivar XinJiangDaYe / MS.gene052096

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052096.t1	XP_003597367.1	92.4	642	49	0	1	642	1	642	2.7e-310	1074.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052096.t1	Q9XE58	51.2	465	199	7	199	642	310	767	5.6e-134	479.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052096.t1	G7IHQ5	92.4	642	49	0	1	642	1	642	1.9e-310	1074.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene052096.t1	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052096.t1	MTR_2g097350	91.277	642	56	0	1	642	1	642	0.0	1161
MS.gene052096.t1	MTR_2g097390	83.717	651	89	4	1	642	1	643	0.0	1071
MS.gene052096.t1	MTR_2g097310	83.436	652	86	6	1	642	1	640	0.0	1069
MS.gene052096.t1	MTR_2g097380	76.364	495	66	5	155	642	113	563	0.0	765
MS.gene052096.t1	MTR_4g064160	60.360	444	163	6	209	642	246	686	0.0	554
MS.gene052096.t1	MTR_4g064120	42.345	614	324	13	46	642	28	628	1.83e-155	462
MS.gene052096.t1	MTR_2g097410	51.902	447	197	9	209	642	302	743	2.11e-154	463
MS.gene052096.t1	MTR_4g064180	41.329	617	326	12	46	642	28	628	3.46e-151	451
MS.gene052096.t1	MTR_4g064150	40.888	653	326	17	46	642	87	735	1.20e-150	453
MS.gene052096.t1	MTR_7g062120	51.938	387	180	3	260	642	358	742	1.38e-150	453

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052096.t1	AT2G29060	43.226	620	304	11	50	641	57	656	6.71e-171	503
MS.gene052096.t1	AT2G29060	42.163	638	322	11	50	641	57	693	1.77e-168	498
MS.gene052096.t1	AT1G07530	51.183	465	199	7	199	642	310	767	1.04e-165	493
MS.gene052096.t1	AT1G07520	48.322	447	215	8	207	642	90	531	2.28e-145	432
MS.gene052096.t1	AT1G07520	48.322	447	215	8	207	642	90	531	2.28e-145	432
MS.gene052096.t1	AT2G29065	41.100	618	318	15	50	642	34	630	1.75e-144	434
MS.gene052096.t1	AT1G07520	48.322	447	215	8	207	642	254	695	4.24e-144	435
MS.gene052096.t1	AT1G07520	48.322	447	215	8	207	642	255	696	4.65e-144	435
MS.gene052096.t1	AT2G37650	49.479	384	186	4	262	641	323	702	7.03e-131	401
MS.gene052096.t1	AT2G37650	49.479	384	186	4	262	641	335	714	9.40e-131	401

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Find 113 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGATGCTACAAGGT+TGG	0.509330	2.3:-5608790	MS.gene052096:CDS
AAACTATAATCACTGATGTC+AGG	0.427646	2.3:+5610249	None:intergenic
AAAGCACGTTTAGCAGGAAC+TGG	0.455780	2.3:-5609694	MS.gene052096:CDS
AAATCCAAAACAGCACCCCT+TGG	0.545355	2.3:+5609193	None:intergenic
AACTATAATCACTGATGTCA+GGG	0.555622	2.3:+5610250	None:intergenic
AAGAAGTTATGAGGAAGTTG+TGG	0.533441	2.3:-5609866	MS.gene052096:CDS
AAGACACATTCTTCTCCAAC+AGG	0.450645	2.3:-5609760	MS.gene052096:CDS
AAGGCTGTGATAGGATTGAG+AGG	0.704778	2.3:-5608955	MS.gene052096:CDS
AATCTTCTTCCATGAGAAAT+TGG	0.203759	2.3:+5610478	None:intergenic
AATGAAAATTGGATGCTACA+AGG	0.641663	2.3:-5608794	MS.gene052096:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATAATCACTGATGTC+AGG	+	chr2.3:5609150-5609169	None:intergenic	30.0%
AACTATAATCACTGATGTCA+GGG	+	chr2.3:5609149-5609168	None:intergenic	30.0%
AATCTTCTTCCATGAGAAAT+TGG	+	chr2.3:5608921-5608940	None:intergenic	30.0%
AATGAAAATTGGATGCTACA+AGG	-	chr2.3:5610602-5610621	MS.gene052096:CDS	30.0%
AATTGAGAAACAAAGTTTGG+AGG	+	chr2.3:5609270-5609289	None:intergenic	30.0%
CAAACAGATTCTATGGTTAT+AGG	-	chr2.3:5609502-5609521	MS.gene052096:CDS	30.0%
CAATGGTATTGCCAAAAATT+GGG	-	chr2.3:5610073-5610092	MS.gene052096:CDS	30.0%
CACCAAAATCTATAATGTGA+AGG	+	chr2.3:5609881-5609900	None:intergenic	30.0%
GATAAACGATGTATAAAACC+AGG	+	chr2.3:5609924-5609943	None:intergenic	30.0%
GATAGATCTTCCAAATTTGT+TGG	-	chr2.3:5609983-5610002	MS.gene052096:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	5608745	5610673	5608745	ID=MS.gene052096
chr2.3	mRNA	5608745	5610673	5608745	ID=MS.gene052096.t1;Parent=MS.gene052096
chr2.3	exon	5608745	5610673	5608745	ID=MS.gene052096.t1.exon1;Parent=MS.gene052096.t1
chr2.3	CDS	5608745	5610673	5608745	ID=cds.MS.gene052096.t1;Parent=MS.gene052096.t1

Gene Sequence

>MS.gene052096

ATGGACAAAAGAGGTGTTGATTCACACCATGAACAAAGGGAGAGTGAATTCTCTTCAACTGTTCTTGGTTTTATAAACAAATTTCTCATGGAAGATGATGACATAGAGGAAGACTACAATATGTTCCAACACCATGAACATGAAGAGTCTTCCAATGCTCTTGGTTATATTAACCAATTTCTCATGGAAGAAGATTTTGAAAAAGAATACACTATGTTCCAAGATTCCTTTGCTCTTCAACTTACTGAGAAATCATTTCATGATGTTATTTCTCACACTCCTCCTCCTCCTCCTCCTCCTCCTACTGCTACTGCTGCTGCTCCTCCTCCTCCTTCTTTCACTTCTTCGTCGTCTTCTTCTTCTTCCATCCAGCATCAACAAAACTACAAATTTGTGCATAGCCCTGACATCAGTGATTATAGTTTCAGCAGTGTTAGCACTAGCTCCTTTGAACTTGATCCAATTATAGACTCATACAACTACAATTACAACCCTTTTCCACTCCCAAATACTCTTCCAATTCCTCCAAACTTTGTTTCTCAATTCGACTCAACCGTTTTCCCTTCTCATGAGGTAATTAAGACAGAAAACTTTGAAGAAGAGCATTTTCTCAATGTGTCACAAAATGAGTCAGAACAAGTATATGTAGATGATAACAGTGAGTTACCAGAATTATTTGATAAATTACTAGTCCTTGGTACTAAAGTAATAAAAGGGCCACTTGAAAACACAAGCTTTCGGCAGAATGAAGAATTATCAAACAGATTCTATGGTTATAGGAGACAAAGAAGTTATGAGGAAGTTGTGGATTTGAGGACACTATTGATGCTATGTGCACAATCCATTTCTTGTAATGATATTTCAAATGCTAACCAGTTATTAAACCAGATTAAGACACATTCTTCTCCAACAGGTGATGGAACTCAAAGGTTGGCACATTTCTTTGGAAATGCACTTAAAGCACGTTTAGCAGGAACTGGTTCACAAATCTATAGAGCTCTATCTTCGAAGAAGAAATCTGCTGCAGATATGGCAAGAGCTTACCAAGTTTATTCATCAGCATGCCCTTTTGAAAAGCTTGCAATTATGTTCTCAAACAATGCAATTTTTAATGTAGCAAAAGAAACAGAAAGCCTTCACATTATAGATTTTGGTGTTGGTTATGGTTTTAAGTGGCCTGGTTTTATACATCGTTTATCGAAAAGATCTGGTGGGCCACCCAAATTGAGGATCACAGGGATAGATCTTCCAAATTTGTTGGAGAGAGTGAATGGAACAGGTCTTAGGCTGGCAACTTATTGCGAACGTTTCGGTGTTCCTTTTGAGTTCAATGGTATTGCCAAAAATTGGGAAAGTATCAAAGTTGAGGATTTTATGATAAGGAAAAATGAGTTTGTTGCTGTGAATTGTTATTTTAAATTTGAAAATCTACTTGATGAGACAGTTGCTTCGGAGAATCCAAGGGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCGAATATATTTGTTCATAGCATTGTTAATGGTGGTTATGATGCACCTTTTTTTGTGACAAGGTTTAAGGAAGCTGTTTTTCATTATTCGGCATTGTTTGATATGCTTGATAACAACAATGTTGAACGTGAGGATCCTAGTAGGTTGATGTTTGAGGAAGAGTTTTGGGGGAAGGATATAATGAATGTTATAGCTTGTGAAGGCTGTGATAGGATTGAGAGGCCAGAGACATATAGGCAATGGCATTTTAGGCACATGGGAAATGGGTTTAAGTCTTTGAAATTGGATAAGCATGTTATAGATAAATTGAAGGGTAAGTTGAGAGATGATGCATATAATAGTGATTTTCTGTTTGAGGTGAATGAAAATTGGATGCTACAAGGTTGGAAGGGTAGAGTTCTATTTGGTTCTTCTTGTTGGATTCCAGCATAG

Protein sequence

>MS.gene052096.t1

MDKRGVDSHHEQRESEFSSTVLGFINKFLMEDDDIEEDYNMFQHHEHEESSNALGYINQFLMEEDFEKEYTMFQDSFALQLTEKSFHDVISHTPPPPPPPPTATAAAPPPPSFTSSSSSSSSIQHQQNYKFVHSPDISDYSFSSVSTSSFELDPIIDSYNYNYNPFPLPNTLPIPPNFVSQFDSTVFPSHEVIKTENFEEEHFLNVSQNESEQVYVDDNSELPELFDKLLVLGTKVIKGPLENTSFRQNEELSNRFYGYRRQRSYEEVVDLRTLLMLCAQSISCNDISNANQLLNQIKTHSSPTGDGTQRLAHFFGNALKARLAGTGSQIYRALSSKKKSAADMARAYQVYSSACPFEKLAIMFSNNAIFNVAKETESLHIIDFGVGYGFKWPGFIHRLSKRSGGPPKLRITGIDLPNLLERVNGTGLRLATYCERFGVPFEFNGIAKNWESIKVEDFMIRKNEFVAVNCYFKFENLLDETVASENPRGAVLDLIKKANPNIFVHSIVNGGYDAPFFVTRFKEAVFHYSALFDMLDNNNVEREDPSRLMFEEEFWGKDIMNVIACEGCDRIERPETYRQWHFRHMGNGFKSLKLDKHVIDKLKGKLRDDAYNSDFLFEVNENWMLQGWKGRVLFGSSCWIPA