AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052125

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052125.t1 MTR_1g086370 91.667 72 6 0 10 81 120 191 4.45e-44 144
MS.gene052125.t1 MTR_7g110060 94.444 72 4 0 10 81 239 310 1.01e-43 145
MS.gene052125.t1 MTR_7g110060 94.444 72 4 0 10 81 239 310 2.40e-43 145
MS.gene052125.t1 MTR_1g086370 91.667 72 6 0 10 81 206 277 2.14e-42 142
MS.gene052125.t1 MTR_1g086370 91.667 72 6 0 10 81 239 310 2.63e-42 142
MS.gene052125.t1 MTR_7g076030 88.889 72 8 0 10 81 198 269 7.22e-42 140
MS.gene052125.t1 MTR_7g076030 88.889 72 8 0 10 81 305 376 1.51e-41 141
MS.gene052125.t1 MTR_1g084760 90.278 72 7 0 10 81 239 310 2.51e-41 139
MS.gene052125.t1 MTR_2g005620 90.278 72 7 0 10 81 254 325 4.88e-41 139
MS.gene052125.t1 MTR_2g083940 88.889 72 8 0 10 81 198 269 1.68e-40 136
MS.gene052125.t1 MTR_2g083940 88.889 72 8 0 10 81 252 323 3.92e-40 137
MS.gene052125.t1 MTR_8g432510 84.722 72 11 0 10 81 303 374 4.20e-39 134
MS.gene052125.t1 MTR_2g016490 83.333 72 12 0 10 81 204 275 5.46e-39 133
MS.gene052125.t1 MTR_7g114300 54.237 59 27 0 11 69 272 330 1.41e-18 79.0
MS.gene052125.t1 MTR_7g114300 54.237 59 27 0 11 69 272 330 2.27e-18 78.2
MS.gene052125.t1 MTR_5g008860 49.153 59 30 0 11 69 305 363 3.88e-18 77.4
MS.gene052125.t1 MTR_4g118780 52.542 59 28 0 11 69 269 327 4.62e-18 77.4
MS.gene052125.t1 MTR_1g081870 52.542 59 28 0 11 69 287 345 5.02e-18 77.4
MS.gene052125.t1 MTR_4g007750 50.000 60 30 0 11 70 185 244 8.63e-18 75.9
MS.gene052125.t1 MTR_4g094430 43.662 71 36 1 11 81 168 234 8.70e-18 75.5
MS.gene052125.t1 MTR_4g061330 48.387 62 32 0 10 71 8 69 1.08e-17 73.2
MS.gene052125.t1 MTR_7g114300 51.429 70 33 1 11 79 272 341 1.30e-17 75.9
MS.gene052125.t1 MTR_7g114300 51.429 70 33 1 11 79 272 341 1.43e-17 75.9
MS.gene052125.t1 MTR_2g020210 50.847 59 29 0 11 69 267 325 1.48e-17 75.9
MS.gene052125.t1 MTR_4g061320 48.387 62 32 0 10 71 204 265 1.59e-17 75.5
MS.gene052125.t1 MTR_2g032060 43.662 71 36 1 11 81 168 234 1.68e-17 74.7
MS.gene052125.t1 MTR_8g080190 53.571 56 26 0 11 66 549 604 2.62e-17 75.1
MS.gene052125.t1 MTR_8g080190 53.571 56 26 0 11 66 549 604 2.64e-17 75.1
MS.gene052125.t1 MTR_8g099770 48.571 70 35 1 11 79 255 324 2.80e-17 75.1
MS.gene052125.t1 MTR_4g087620 42.647 68 39 0 10 77 219 286 2.93e-17 74.7
MS.gene052125.t1 MTR_7g078690 52.632 57 27 0 10 66 202 258 3.35e-17 74.7
MS.gene052125.t1 MTR_3g085650 44.595 74 37 1 11 84 580 649 5.21e-17 74.3
MS.gene052125.t1 MTR_3g085650 44.595 74 37 1 11 84 580 649 5.22e-17 74.3
MS.gene052125.t1 MTR_3g085650 44.595 74 37 1 11 84 580 649 5.23e-17 74.3
MS.gene052125.t1 MTR_3g085650 44.595 74 37 1 11 84 580 649 5.24e-17 74.3
MS.gene052125.t1 MTR_3g098760 52.542 59 28 0 11 69 262 320 7.43e-17 73.9
MS.gene052125.t1 MTR_8g461040 56.250 64 25 2 10 71 194 256 9.23e-17 73.6
MS.gene052125.t1 MTR_8g098845 49.123 57 29 0 10 66 216 272 1.15e-16 73.2
MS.gene052125.t1 MTR_8g086000 45.455 66 36 0 10 75 197 262 1.53e-16 72.8
MS.gene052125.t1 MTR_2g085200 47.458 59 31 0 11 69 299 357 2.04e-16 72.8
MS.gene052125.t1 MTR_6g087920 47.761 67 32 1 3 69 274 337 2.77e-16 72.0
MS.gene052125.t1 MTR_1g098300 40.260 77 46 0 11 87 291 367 3.00e-16 72.0
MS.gene052125.t1 MTR_5g091680 53.125 64 27 2 10 71 190 252 3.35e-16 72.0
MS.gene052125.t1 MTR_5g091680 53.125 64 27 2 10 71 190 252 3.40e-16 72.0
MS.gene052125.t1 MTR_5g091680 53.125 64 27 2 10 71 188 250 3.42e-16 72.0
MS.gene052125.t1 MTR_5g091680 53.125 64 27 2 10 71 190 252 3.42e-16 72.0
MS.gene052125.t1 MTR_4g078290 45.763 59 32 0 11 69 294 352 3.44e-16 72.0
MS.gene052125.t1 MTR_4g078290 45.763 59 32 0 11 69 294 352 3.44e-16 72.0
MS.gene052125.t1 MTR_8g028720 52.632 57 27 0 10 66 201 257 4.24e-16 71.6
MS.gene052125.t1 MTR_8g092290 42.188 64 37 0 11 74 306 369 5.34e-16 71.6
MS.gene052125.t1 MTR_8g086000 45.455 66 36 0 10 75 240 305 5.35e-16 71.2
MS.gene052125.t1 MTR_5g010030 42.857 63 36 0 10 72 205 267 6.32e-16 71.2
MS.gene052125.t1 MTR_4g103810 50.000 56 28 0 11 66 274 329 6.92e-16 71.2
MS.gene052125.t1 MTR_4g103810 50.000 56 28 0 11 66 384 439 7.37e-16 71.2
MS.gene052125.t1 MTR_1g075610 45.763 59 32 0 11 69 190 248 9.10e-16 70.5
MS.gene052125.t1 MTR_2g090405 45.614 57 31 0 11 67 306 362 1.10e-15 70.5
MS.gene052125.t1 MTR_6g013030 47.458 59 31 0 11 69 275 333 2.42e-15 69.7
MS.gene052125.t1 MTR_4g117490 53.125 64 27 2 10 71 193 255 2.73e-15 69.3
MS.gene052125.t1 MTR_4g117490 53.125 64 27 2 10 71 193 255 2.95e-15 69.3
MS.gene052125.t1 MTR_8g070930 54.545 55 24 1 10 64 306 359 3.51e-15 69.3
MS.gene052125.t1 MTR_3g460950 41.096 73 43 0 10 82 197 269 4.20e-15 68.9
MS.gene052125.t1 MTR_3g060330 41.096 73 43 0 10 82 197 269 4.20e-15 68.9
MS.gene052125.t1 MTR_8g103240 49.206 63 29 1 3 65 287 346 4.33e-15 68.9
MS.gene052125.t1 MTR_2g072840 54.688 64 26 2 10 71 193 255 4.65e-15 68.9
MS.gene052125.t1 MTR_6g079470 51.562 64 28 2 10 71 257 319 4.86e-15 68.9
MS.gene052125.t1 MTR_2g072840 54.688 64 26 2 10 71 103 165 5.02e-15 68.6
MS.gene052125.t1 MTR_2g072840 54.688 64 26 2 10 71 193 255 5.25e-15 68.6
MS.gene052125.t1 MTR_6g080470 46.552 58 31 0 10 67 175 232 5.62e-15 68.6
MS.gene052125.t1 MTR_4g109090 45.763 59 32 0 11 69 122 180 6.11e-15 68.6
MS.gene052125.t1 MTR_4g109090 45.763 59 32 0 11 69 270 328 6.21e-15 68.6
MS.gene052125.t1 MTR_7g011800 44.068 59 33 0 11 69 285 343 6.92e-15 68.2
MS.gene052125.t1 MTR_2g021330 51.562 64 28 2 10 71 193 255 7.99e-15 68.2
MS.gene052125.t1 MTR_2g021330 51.562 64 28 2 10 71 193 255 9.70e-15 67.8
MS.gene052125.t1 MTR_3g089510 50.000 64 29 2 10 71 181 243 1.20e-14 67.8
MS.gene052125.t1 MTR_3g089510 50.000 64 29 2 10 71 193 255 1.20e-14 67.8
MS.gene052125.t1 MTR_8g461270 48.333 60 31 0 10 69 215 274 1.20e-14 67.4
MS.gene052125.t1 MTR_8g106960 51.562 64 28 2 10 71 286 348 1.54e-14 67.4
MS.gene052125.t1 MTR_8g106960 51.562 64 28 2 10 71 286 348 1.54e-14 67.4
MS.gene052125.t1 MTR_3g096960 45.588 68 29 1 11 70 195 262 2.75e-14 66.6
MS.gene052125.t1 MTR_3g112210 43.939 66 37 0 10 75 197 262 3.89e-14 66.2
MS.gene052125.t1 MTR_3g040810 44.643 56 31 0 11 66 202 257 1.01e-13 65.1
MS.gene052125.t1 MTR_8g071230 41.667 60 35 0 10 69 162 221 1.14e-13 64.7
MS.gene052125.t1 MTR_8g012450 45.614 57 31 0 10 66 162 218 1.70e-13 64.3
MS.gene052125.t1 MTR_3g040520 44.643 56 31 0 11 66 204 259 1.76e-13 64.3
MS.gene052125.t1 MTR_8g012450 45.614 57 31 0 10 66 162 218 1.81e-13 64.3
MS.gene052125.t1 MTR_3g054080 43.103 58 33 0 10 67 177 234 3.72e-13 63.2
MS.gene052125.t1 MTR_4g087620 47.170 53 28 0 10 62 219 271 5.42e-13 62.4
MS.gene052125.t1 MTR_5g026960 40.000 60 36 0 10 69 162 221 4.13e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052125.t1 AT5G14640 93.056 72 5 0 10 81 238 309 1.53e-42 142
MS.gene052125.t1 AT5G14640 93.056 72 5 0 10 81 238 309 1.53e-42 142
MS.gene052125.t1 AT3G05840 91.667 72 6 0 10 81 237 308 3.48e-42 142
MS.gene052125.t1 AT3G05840 91.667 72 6 0 10 81 237 308 3.48e-42 142
MS.gene052125.t1 AT5G26751 91.667 72 6 0 10 81 233 304 4.69e-42 141
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 120 191 8.94e-42 138
MS.gene052125.t1 AT1G57870 90.278 72 7 0 10 81 246 317 4.17e-41 139
MS.gene052125.t1 AT1G57870 90.278 72 7 0 10 81 246 317 4.17e-41 139
MS.gene052125.t1 AT1G57870 90.278 72 7 0 10 81 246 317 4.17e-41 139
MS.gene052125.t1 AT1G57870 90.278 72 7 0 10 81 246 317 5.60e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G09840 88.889 72 8 0 10 81 247 318 7.03e-41 139
MS.gene052125.t1 AT1G06390 87.500 72 9 0 10 81 234 305 8.64e-40 135
MS.gene052125.t1 AT1G06390 87.500 72 9 0 10 81 234 305 8.64e-40 135
MS.gene052125.t1 AT2G30980 87.500 72 9 0 10 81 236 307 9.69e-40 135
MS.gene052125.t1 AT4G18710 86.111 72 10 0 10 81 204 275 1.11e-39 134
MS.gene052125.t1 AT4G00720 83.333 72 12 0 10 81 302 373 1.72e-39 135
MS.gene052125.t1 AT4G18710 83.333 72 12 0 10 81 198 269 1.35e-38 129
MS.gene052125.t1 AT3G61160 75.000 72 18 0 10 81 273 344 2.74e-36 125
MS.gene052125.t1 AT3G61160 75.000 72 18 0 10 81 266 337 2.80e-36 125
MS.gene052125.t1 AT3G61160 75.000 72 18 0 10 81 266 337 4.87e-36 125
MS.gene052125.t1 AT3G61160 75.000 72 18 0 10 81 266 337 9.75e-35 122
MS.gene052125.t1 AT3G61160 75.000 72 18 0 10 81 273 344 1.10e-34 122
MS.gene052125.t1 AT3G61160 75.000 72 18 0 10 81 266 337 1.14e-34 122
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 465 521 6.49e-19 79.7
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 465 521 6.49e-19 79.7
MS.gene052125.t1 AT2G38620 50.000 60 30 0 11 70 185 244 6.54e-19 79.0
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 465 521 7.16e-19 79.7
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 465 521 7.16e-19 79.7
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 465 521 7.16e-19 79.7
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 465 521 7.16e-19 79.7
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 465 521 7.16e-19 79.7
MS.gene052125.t1 AT3G48750 43.056 72 39 1 11 80 168 239 7.34e-19 78.6
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 331 387 1.25e-18 79.0
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 331 387 1.25e-18 79.0
MS.gene052125.t1 AT5G63370 56.140 57 25 0 10 66 331 387 1.31e-18 79.0
MS.gene052125.t1 AT2G38620 50.000 60 30 0 11 70 123 182 1.47e-18 77.0
MS.gene052125.t1 AT2G46070 51.613 62 30 0 10 71 205 266 7.70e-18 76.3
MS.gene052125.t1 AT1G54610 52.542 59 28 0 11 69 283 341 7.98e-18 76.6
MS.gene052125.t1 AT1G54610 52.542 59 28 0 11 69 283 341 7.98e-18 76.6
MS.gene052125.t1 AT1G54610 52.542 59 28 0 11 69 283 341 7.98e-18 76.6
MS.gene052125.t1 AT2G46070 51.613 62 30 0 10 71 239 300 1.18e-17 76.3
MS.gene052125.t1 AT2G46070 51.613 62 30 0 10 71 205 266 1.21e-17 75.9
MS.gene052125.t1 AT1G67580 53.571 56 26 0 11 66 570 625 1.51e-17 75.9
MS.gene052125.t1 AT1G67580 53.571 56 26 0 11 66 570 625 1.51e-17 75.9
MS.gene052125.t1 AT3G54180 48.333 60 31 0 11 70 183 242 1.75e-17 75.1
MS.gene052125.t1 AT1G71530 50.847 59 29 0 11 69 312 370 1.77e-17 75.9
MS.gene052125.t1 AT3G59790 43.939 66 37 0 10 75 224 289 1.83e-17 75.5
MS.gene052125.t1 AT1G76540 45.070 71 35 1 11 81 186 252 2.15e-17 74.7
MS.gene052125.t1 AT1G73690 44.444 72 36 2 10 78 172 242 2.60e-17 75.1
MS.gene052125.t1 AT1G01560 52.632 57 27 0 10 66 204 260 2.80e-17 74.7
MS.gene052125.t1 AT1G01560 52.632 57 27 0 10 66 204 260 3.87e-17 74.3
MS.gene052125.t1 AT1G53050 49.153 59 30 0 11 69 299 357 5.14e-17 74.3
MS.gene052125.t1 AT1G53050 49.153 59 30 0 11 69 299 357 5.14e-17 74.3
MS.gene052125.t1 AT1G20930 49.153 59 30 0 11 69 188 246 6.49e-17 73.6
MS.gene052125.t1 AT4G10010 52.632 57 27 0 11 67 321 377 7.48e-17 73.9
MS.gene052125.t1 AT4G10010 52.632 57 27 0 11 67 141 197 7.70e-17 73.9
MS.gene052125.t1 AT1G71530 50.847 59 29 0 11 69 312 370 9.69e-17 73.6
MS.gene052125.t1 AT1G57700 45.763 59 32 0 11 69 311 369 9.86e-17 73.6
MS.gene052125.t1 AT1G71530 50.847 59 29 0 11 69 312 370 1.05e-16 73.6
MS.gene052125.t1 AT5G50860 50.877 57 28 0 11 67 279 335 1.08e-16 73.6
MS.gene052125.t1 AT5G50860 50.877 57 28 0 11 67 279 335 1.09e-16 73.6
MS.gene052125.t1 AT1G33770 47.458 59 31 0 11 69 306 364 1.30e-16 73.2
MS.gene052125.t1 AT1G09600 45.763 59 32 0 11 69 328 386 1.34e-16 73.2
MS.gene052125.t1 AT1G03740 49.123 57 29 0 11 67 378 434 2.42e-16 72.4
MS.gene052125.t1 AT1G03740 49.123 57 29 0 11 67 378 434 2.43e-16 72.4
MS.gene052125.t1 AT1G66750 48.214 56 29 0 11 66 175 230 3.25e-16 71.6
MS.gene052125.t1 AT3G45640 45.161 62 34 0 10 71 202 263 3.31e-16 72.0
MS.gene052125.t1 AT4G11330 47.368 57 30 0 10 66 207 263 3.69e-16 71.6
MS.gene052125.t1 AT1G18040 44.262 61 34 0 10 70 173 233 5.61e-16 71.2
MS.gene052125.t1 AT3G14720 54.688 64 26 2 10 71 193 255 5.66e-16 71.2
MS.gene052125.t1 AT3G14720 54.688 64 26 2 10 71 193 255 5.66e-16 71.2
MS.gene052125.t1 AT1G53510 53.125 64 27 2 10 71 193 255 8.27e-16 70.9
MS.gene052125.t1 AT3G14720 54.688 64 26 2 10 71 193 255 9.19e-16 70.9
MS.gene052125.t1 AT4G01370 52.632 57 27 0 10 66 207 263 9.77e-16 70.5
MS.gene052125.t1 AT1G18150 53.125 64 27 2 10 71 272 334 1.02e-15 70.9
MS.gene052125.t1 AT1G18150 53.125 64 27 2 10 71 272 334 1.02e-15 70.9
MS.gene052125.t1 AT1G18150 53.125 64 27 2 10 71 272 334 1.02e-15 70.9
MS.gene052125.t1 AT1G18670 47.458 59 31 0 11 69 297 355 1.17e-15 70.5
MS.gene052125.t1 AT1G18670 47.458 59 31 0 11 69 297 355 1.17e-15 70.5
MS.gene052125.t1 AT1G18670 47.458 59 31 0 11 69 297 355 1.17e-15 70.5
MS.gene052125.t1 AT3G05050 47.458 59 31 0 11 69 303 361 1.21e-15 70.5
MS.gene052125.t1 AT3G05050 47.458 59 31 0 11 69 303 361 1.21e-15 70.5
MS.gene052125.t1 AT3G05050 47.458 59 31 0 11 69 303 361 1.21e-15 70.5
MS.gene052125.t1 AT5G19010 53.125 64 27 2 10 71 193 255 1.23e-15 70.5
MS.gene052125.t1 AT1G73670 53.125 64 27 2 10 71 258 320 1.48e-15 70.1
MS.gene052125.t1 AT1G01560 54.717 53 24 0 10 62 204 256 1.58e-15 69.3
MS.gene052125.t1 AT1G01560 54.717 53 24 0 10 62 204 256 1.58e-15 69.3
MS.gene052125.t1 AT1G74330 47.458 59 31 0 11 69 288 346 1.74e-15 70.1
MS.gene052125.t1 AT1G74330 47.458 59 31 0 11 69 288 346 1.75e-15 70.1
MS.gene052125.t1 AT1G74330 47.458 59 31 0 11 69 288 346 1.75e-15 70.1
MS.gene052125.t1 AT5G35980 56.364 55 23 1 10 64 288 341 2.52e-15 69.7
MS.gene052125.t1 AT4G22940 47.368 57 30 0 11 67 269 325 2.61e-15 69.7
MS.gene052125.t1 AT5G35980 56.364 55 23 1 10 64 288 341 2.70e-15 69.7
MS.gene052125.t1 AT4G28980 42.683 82 40 4 3 81 292 369 2.81e-15 69.3
MS.gene052125.t1 AT4G28980 42.683 82 40 4 3 81 292 369 2.81e-15 69.3
MS.gene052125.t1 AT4G28980 42.683 82 40 4 3 81 292 369 2.81e-15 69.3
MS.gene052125.t1 AT3G01085 45.763 59 32 0 11 69 280 338 2.91e-15 69.3
MS.gene052125.t1 AT3G01085 45.763 59 32 0 11 69 280 338 2.91e-15 69.3
MS.gene052125.t1 AT3G01085 45.763 59 32 0 11 69 280 338 2.91e-15 69.3
MS.gene052125.t1 AT5G35980 56.364 55 23 1 10 64 253 306 3.24e-15 69.3
MS.gene052125.t1 AT2G43790 46.552 58 31 0 10 67 227 284 3.47e-15 68.9
MS.gene052125.t1 AT2G42880 50.000 64 29 2 10 71 193 255 4.10e-15 68.9
MS.gene052125.t1 AT2G42880 50.000 64 29 2 10 71 193 255 4.21e-15 68.9
MS.gene052125.t1 AT2G38620 49.057 53 27 0 11 63 185 237 6.69e-15 67.4
MS.gene052125.t1 AT2G38620 49.057 53 27 0 11 63 185 237 6.69e-15 67.4
MS.gene052125.t1 AT3G18040 51.562 64 28 2 10 71 186 248 6.75e-15 68.6
MS.gene052125.t1 AT3G18040 51.562 64 28 2 10 71 191 253 6.76e-15 68.6
MS.gene052125.t1 AT1G07880 46.774 62 33 0 10 71 197 258 6.85e-15 68.2
MS.gene052125.t1 AT3G18040 51.562 64 28 2 10 71 300 362 6.86e-15 68.6
MS.gene052125.t1 AT3G18040 51.562 64 28 2 10 71 300 362 6.87e-15 68.6
MS.gene052125.t1 AT3G18040 51.562 64 28 2 10 71 103 165 6.95e-15 68.2
MS.gene052125.t1 AT5G44290 45.763 59 32 0 11 69 302 360 8.68e-15 68.2
MS.gene052125.t1 AT5G44290 45.763 59 32 0 11 69 302 360 8.68e-15 68.2
MS.gene052125.t1 AT5G44290 45.763 59 32 0 11 69 302 360 8.68e-15 68.2
MS.gene052125.t1 AT5G44290 45.763 59 32 0 11 69 302 360 8.68e-15 68.2
MS.gene052125.t1 AT5G44290 45.763 59 32 0 11 69 302 360 8.68e-15 68.2
MS.gene052125.t1 AT5G44290 45.763 59 32 0 11 69 302 360 9.19e-15 68.2
MS.gene052125.t1 AT4G22940 45.763 59 32 0 11 69 269 327 1.04e-14 67.8
MS.gene052125.t1 AT5G44290 45.763 59 32 0 11 69 302 360 1.22e-14 67.8
MS.gene052125.t1 AT5G39420 44.643 56 31 0 11 66 270 325 1.28e-14 67.8
MS.gene052125.t1 AT4G13020 50.877 57 28 0 10 66 162 218 1.45e-14 67.4
MS.gene052125.t1 AT4G19110 45.000 60 33 0 10 69 162 221 1.53e-14 67.4
MS.gene052125.t1 AT4G13020 50.877 57 28 0 10 66 171 227 1.74e-14 67.0
MS.gene052125.t1 AT4G19110 45.000 60 33 0 10 69 162 221 1.75e-14 67.0
MS.gene052125.t1 AT4G13020 50.877 57 28 0 10 66 162 218 1.78e-14 67.0
MS.gene052125.t1 AT4G13020 50.877 57 28 0 10 66 162 218 1.86e-14 67.0
MS.gene052125.t1 AT4G13020 50.877 57 28 0 10 66 171 227 1.90e-14 67.0
MS.gene052125.t1 AT4G13020 50.877 57 28 0 10 66 162 218 1.93e-14 67.0
MS.gene052125.t1 AT4G13020 50.877 57 28 0 10 66 170 226 1.93e-14 67.0
MS.gene052125.t1 AT4G13020 50.877 57 28 0 10 66 170 226 1.94e-14 67.0
MS.gene052125.t1 AT5G45430 45.000 60 33 0 10 69 162 221 2.24e-14 67.0
MS.gene052125.t1 AT5G45430 45.000 60 33 0 10 69 162 221 2.35e-14 67.0
MS.gene052125.t1 AT4G19110 45.000 60 33 0 10 69 106 165 2.52e-14 66.6
MS.gene052125.t1 AT2G01450 50.000 60 27 2 10 67 184 242 2.74e-14 66.6
MS.gene052125.t1 AT2G01450 50.000 60 27 2 10 67 184 242 2.74e-14 66.6
MS.gene052125.t1 AT2G01450 50.000 60 27 2 10 67 184 242 2.74e-14 66.6
MS.gene052125.t1 AT2G01450 50.000 60 27 2 10 67 184 242 2.74e-14 66.6
MS.gene052125.t1 AT5G64960 46.429 56 30 0 11 66 205 260 1.35e-13 64.7
MS.gene052125.t1 AT5G64960 46.429 56 30 0 11 66 152 207 1.39e-13 64.7
MS.gene052125.t1 AT5G63610 41.176 68 32 1 11 70 200 267 1.39e-13 64.7
MS.gene052125.t1 AT1G59580 40.909 66 39 0 10 75 197 262 3.76e-13 63.2
MS.gene052125.t1 AT1G59580 40.909 66 39 0 10 75 197 262 3.76e-13 63.2
MS.gene052125.t1 AT5G10270 44.643 56 31 0 11 66 205 260 4.13e-13 63.2
MS.gene052125.t1 AT2G18170 40.541 74 43 1 10 82 197 270 5.30e-13 62.8
MS.gene052125.t1 AT1G10210 41.176 68 39 1 10 76 197 264 7.65e-13 62.4
MS.gene052125.t1 AT1G10210 41.176 68 39 1 10 76 197 264 7.65e-13 62.4
MS.gene052125.t1 AT1G10210 41.176 68 39 1 10 76 197 264 7.65e-13 62.4
MS.gene052125.t1 AT1G07880 50.943 53 26 0 10 62 197 249 1.74e-12 60.8
MS.gene052125.t1 AT1G71530 58.140 43 18 0 11 53 312 354 3.27e-12 60.8
MS.gene052125.t1 AT4G36450 39.394 66 40 0 10 75 194 259 4.35e-12 60.5
MS.gene052125.t1 AT4G01595 52.083 48 23 0 24 71 20 67 2.12e-11 56.2

Find 22 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTATACCTAGTATAATT+AGG 0.273993 2.3:+5895310 None:intergenic
GCTTAGGACAGAACAGAATT+AGG 0.278608 2.3:-5896196 MS.gene052125:intron
CACTTGATTTCTTCCCTGGT+TGG 0.307218 2.3:+5895340 None:intergenic
TCTTATCAGCCACTGTTTCC+TGG 0.308862 2.3:-5895566 MS.gene052125:intron
ACTTGATTTCTTCCCTGGTT+GGG 0.328331 2.3:+5895341 None:intergenic
CATGCACTTGATTTCTTCCC+TGG 0.361221 2.3:+5895336 None:intergenic
TGGTCAGCTGGTTGCGTACT+TGG 0.374738 2.3:-5895686 MS.gene052125:CDS
ACATGTTCTATGTGTTGCTT+AGG 0.410998 2.3:-5896212 None:intergenic
CTTGATTTCTTCCCTGGTTG+GGG 0.414502 2.3:+5895342 None:intergenic
TACTCAGTTGCACCGAATAT+AGG 0.447929 2.3:+5895728 None:intergenic
CCTTGATAATTTCCACAAGT+TGG 0.452229 2.3:+5895528 None:intergenic
AGAGCTCCTGAGCCTATATT+CGG 0.474591 2.3:-5895740 MS.gene052125:CDS
GTCATTGACATCTGGTCAGC+TGG 0.482850 2.3:-5895698 MS.gene052125:CDS
CCACTGTTTCCTGGTGAGAG+TGG 0.506242 2.3:-5895557 MS.gene052125:CDS
CCAACTTGTGGAAATTATCA+AGG 0.511188 2.3:-5895528 MS.gene052125:intron
ACACCACAGTCATTGACATC+TGG 0.524089 2.3:-5895706 MS.gene052125:CDS
GCATGAATCCTAATTATACT+AGG 0.531370 2.3:-5895318 MS.gene052125:intron
GTTGCACCGAATATAGGCTC+AGG 0.565527 2.3:+5895734 None:intergenic
TGGTCTACTCCACTCTCACC+AGG 0.583110 2.3:+5895548 None:intergenic
CCACTCTCACCAGGAAACAG+TGG 0.653830 2.3:+5895557 None:intergenic
GAGTGGAGTAGACCAACTTG+TGG 0.666033 2.3:-5895540 MS.gene052125:CDS
TGACCAGATGTCAATGACTG+TGG 0.757242 2.3:+5895703 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATACCTAGTATAATT+AGG + chr2.3:5896103-5896122 None:intergenic 15.0%
!! AAACGAAACAAAAATATGAA+AGG + chr2.3:5895986-5896005 None:intergenic 20.0%
! AAATCTTTGTAGGTTAATCA+AGG - chr2.3:5896139-5896158 MS.gene052125:intron 25.0%
! TTGAATTCAAGCTCATAAAA+AGG + chr2.3:5895362-5895381 None:intergenic 25.0%
ACATATCTTACATCTGTTCT+AGG - chr2.3:5895641-5895660 MS.gene052125:intron 30.0%
ATTCAAGCTCTTGAACAATT+CGG - chr2.3:5895376-5895395 MS.gene052125:intron 30.0%
GAACAGATGTAAGATATGTT+TGG + chr2.3:5895640-5895659 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG - chr2.3:5895533-5895552 MS.gene052125:CDS 30.0%
GCATGAATCCTAATTATACT+AGG - chr2.3:5896092-5896111 MS.gene052125:intron 30.0%
GTTAATTCGAAAGTTTCATG+TGG - chr2.3:5896024-5896043 MS.gene052125:intron 30.0%
TAAACTTGGGAAATCTTTGT+AGG - chr2.3:5896129-5896148 MS.gene052125:intron 30.0%
! TTTTGTGCGATTTGAAAATG+TGG - chr2.3:5895245-5895264 MS.gene052125:intron 30.0%
AAAAGGTTCATGATGAACTC+AGG + chr2.3:5895345-5895364 None:intergenic 35.0%
ATATGTTCAAGCTAGTAGCA+AGG + chr2.3:5895950-5895969 None:intergenic 35.0%
CCAACTTGTGGAAATTATCA+AGG - chr2.3:5895882-5895901 MS.gene052125:intron 35.0%
GCTCAATAGTTTGACTCATT+TGG - chr2.3:5895403-5895422 MS.gene052125:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr2.3:5895538-5895557 MS.gene052125:CDS 35.0%
! CCTTGATAATTTCCACAAGT+TGG + chr2.3:5895885-5895904 None:intergenic 35.0%
ACACAAAGAAGCTAGTTACC+TGG + chr2.3:5895765-5895784 None:intergenic 40.0%
ACTTGATTTCTTCCCTGGTT+GGG + chr2.3:5896072-5896091 None:intergenic 40.0%
AGCTCTTGAACAATTCGGTT+CGG - chr2.3:5895381-5895400 MS.gene052125:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG - chr2.3:5895540-5895559 MS.gene052125:CDS 40.0%
CTAGCTTCTTTGTGTATGCT+TGG - chr2.3:5895770-5895789 MS.gene052125:intron 40.0%
CTGTAAAACTGCCCTATGTA+GGG + chr2.3:5895605-5895624 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr2.3:5895539-5895558 MS.gene052125:CDS 40.0%
GCTTAGGACAGAACAGAATT+AGG - chr2.3:5895214-5895233 MS.gene052125:CDS 40.0%
GGGTTGAAAATGAGTCGAAT+TGG - chr2.3:5895271-5895290 MS.gene052125:intron 40.0%
TACTCAGTTGCACCGAATAT+AGG + chr2.3:5895685-5895704 None:intergenic 40.0%
! ATTCGACTCATTTTCAACCC+TGG + chr2.3:5895271-5895290 None:intergenic 40.0%
!! GTACTTGGTGAACTTTTGCT+TGG - chr2.3:5895739-5895758 MS.gene052125:CDS 40.0%
!!! GGTTGACGGTGAACTTTTTT+TGG + chr2.3:5895584-5895603 None:intergenic 40.0%
!!! TGACGGTGAACTTTTTTTGG+TGG + chr2.3:5895581-5895600 None:intergenic 40.0%
ACACCACAGTCATTGACATC+TGG - chr2.3:5895704-5895723 MS.gene052125:CDS 45.0%
AGAGCTCCTGAGCCTATATT+CGG - chr2.3:5895670-5895689 MS.gene052125:CDS 45.0%
CACTTGATTTCTTCCCTGGT+TGG + chr2.3:5896073-5896092 None:intergenic 45.0%
CATGCACTTGATTTCTTCCC+TGG + chr2.3:5896077-5896096 None:intergenic 45.0%
CCTGTAAAACTGCCCTATGT+AGG + chr2.3:5895606-5895625 None:intergenic 45.0%
CTTGATTTCTTCCCTGGTTG+GGG + chr2.3:5896071-5896090 None:intergenic 45.0%
GCGATTTGAAAATGTGGCCA+GGG - chr2.3:5895251-5895270 MS.gene052125:intron 45.0%
GTTTCATGTGGTTCACTTGC+AGG - chr2.3:5896036-5896055 MS.gene052125:intron 45.0%
TCTTATCAGCCACTGTTTCC+TGG - chr2.3:5895844-5895863 MS.gene052125:intron 45.0%
TGACCAGATGTCAATGACTG+TGG + chr2.3:5895710-5895729 None:intergenic 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG - chr2.3:5895511-5895530 MS.gene052125:intron 45.0%
TGCGATTTGAAAATGTGGCC+AGG - chr2.3:5895250-5895269 MS.gene052125:intron 45.0%
TTCACCGTCAACCCTACATA+GGG - chr2.3:5895591-5895610 MS.gene052125:intron 45.0%
! CCTACATAGGGCAGTTTTAC+AGG - chr2.3:5895603-5895622 MS.gene052125:intron 45.0%
! GTGGTTCACTTGCAGGTTTT+AGG - chr2.3:5896043-5896062 MS.gene052125:intron 45.0%
!!! AACTTTTTTTGGTGGTGGCC+GGG + chr2.3:5895573-5895592 None:intergenic 45.0%
!!! CGGTGAACTTTTTTTGGTGG+TGG + chr2.3:5895578-5895597 None:intergenic 45.0%
!!! GAACTTTTTTTGGTGGTGGC+CGG + chr2.3:5895574-5895593 None:intergenic 45.0%
!! ATAATTATATATATAAACTT+GGG - chr2.3:5896116-5896135 MS.gene052125:intron 5.0%
!! TATAATTATATATATAAACT+TGG - chr2.3:5896115-5896134 MS.gene052125:intron 5.0%
ACTGCCCTATGTAGGGTTGA+CGG + chr2.3:5895598-5895617 None:intergenic 50.0%
GAGTGGAGTAGACCAACTTG+TGG - chr2.3:5895870-5895889 MS.gene052125:intron 50.0%
GTCATTGACATCTGGTCAGC+TGG - chr2.3:5895712-5895731 MS.gene052125:CDS 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - chr2.3:5895510-5895529 MS.gene052125:intron 50.0%
GTTCACCGTCAACCCTACAT+AGG - chr2.3:5895590-5895609 MS.gene052125:intron 50.0%
GTTGCACCGAATATAGGCTC+AGG + chr2.3:5895679-5895698 None:intergenic 50.0%
! TGGTGAACTTTTGCTTGGCC+AGG - chr2.3:5895744-5895763 MS.gene052125:CDS 50.0%
!!! AGGTTTTAGGTACCCCAACC+AGG - chr2.3:5896056-5896075 MS.gene052125:intron 50.0%
!!! GGTTTTAGGTACCCCAACCA+GGG - chr2.3:5896057-5896076 MS.gene052125:intron 50.0%
CCAACTGAGCTAAGCTCACG+AGG + chr2.3:5895509-5895528 None:intergenic 55.0%
CCACTCTCACCAGGAAACAG+TGG + chr2.3:5895856-5895875 None:intergenic 55.0%
CCACTGTTTCCTGGTGAGAG+TGG - chr2.3:5895853-5895872 MS.gene052125:intron 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr2.3:5895506-5895525 MS.gene052125:intron 55.0%
TGGTCAGCTGGTTGCGTACT+TGG - chr2.3:5895724-5895743 MS.gene052125:CDS 55.0%
TGGTCTACTCCACTCTCACC+AGG + chr2.3:5895865-5895884 None:intergenic 55.0%
AAGGTCCGGGGTTCGATTCC+CGG - chr2.3:5895552-5895571 MS.gene052125:CDS 60.0%
GGTGGCCGGGAATCGAACCC+CGG + chr2.3:5895560-5895579 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 5895207 5896225 5895207 ID=MS.gene052125
chr2.3 mRNA 5895207 5896225 5895207 ID=MS.gene052125.t1;Parent=MS.gene052125
chr2.3 exon 5896197 5896225 5896197 ID=MS.gene052125.t1.exon1;Parent=MS.gene052125.t1
chr2.3 CDS 5896197 5896225 5896197 ID=cds.MS.gene052125.t1;Parent=MS.gene052125.t1
chr2.3 exon 5895667 5895769 5895667 ID=MS.gene052125.t1.exon2;Parent=MS.gene052125.t1
chr2.3 CDS 5895667 5895769 5895667 ID=cds.MS.gene052125.t1;Parent=MS.gene052125.t1
chr2.3 exon 5895529 5895579 5895529 ID=MS.gene052125.t1.exon3;Parent=MS.gene052125.t1
chr2.3 CDS 5895529 5895579 5895529 ID=cds.MS.gene052125.t1;Parent=MS.gene052125.t1
chr2.3 exon 5895319 5895374 5895319 ID=MS.gene052125.t1.exon4;Parent=MS.gene052125.t1
chr2.3 CDS 5895319 5895374 5895319 ID=cds.MS.gene052125.t1;Parent=MS.gene052125.t1
chr2.3 exon 5895207 5895234 5895207 ID=MS.gene052125.t1.exon5;Parent=MS.gene052125.t1
chr2.3 CDS 5895207 5895234 5895207 ID=cds.MS.gene052125.t1;Parent=MS.gene052125.t1
Gene Sequence

>MS.gene052125

ATGTGTTGCTTAGGACAGAACAGAATTAGGTGTTCTGATTTTGTGCGATTTGAAAATGTGGCCAGGGTTGAAAATGAGTCGAATTGGTTTAGTTTGAAGCGACTCGATATAAATTGATTTTAGCTTAAAATTCGACCTGAGTTCATCATGAACCTTTTTATGAGCTTGAATTCAAGCTCTTGAACAATTCGGTTCGGCTCAATAGTTTGACTCATTTGGTTCATGAAACATATTTAACAAGTTAATTAGCAAAATTCATGAACTACTTTCGAGTTTGTTCAGTTCACTGTCAACTTTGTCCTCGTGAGCTTAGCTCAGTTGGTTGGGACAATGCATAAAATATGCAAGGTCCGGGGTTCGATTCCCGGCCACCACCAAAAAAAGTTCACCGTCAACCCTACATAGGGCAGTTTTACAGGTTAAATGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCCTATATTCGGTGCAACTGAGTACACCACAGTCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGGTAACTAGCTTCTTTGTGTATGCTTGGTCAAGTTACATTTAGAATTCATGTATGTCAAAATTAATGATGTATTTCTGTTCTTATCAGCCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTAAGATATGTTTTAAACAATAGTATAACAATAGTGATGTTTACCTTGCTACTAGCTTGAACATATCAGTTTTAAGTGACCTTTCATATTTTTGTTTCGTTTTGTGCTATTTTCAGTTTAGTTAATTCGAAAGTTTCATGTGGTTCACTTGCAGGTTTTAGGTACCCCAACCAGGGAAGAAATCAAGTGCATGAATCCTAATTATACTAGGTATAATTATATATATAAACTTGGGAAATCTTTGTAGGTTAATCAAGGTTTGAATTCATTGAATTAGAAGTATATCATATATAGTTTGATACTGCTAGCTCATCGCTCTTAG
Protein sequence

>MS.gene052125.t1

MCCLGQNRIRYYRAPEPIFGATEYTTVIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTSLILLAHRS