Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052222.t1 | XP_003601983.1 | 95.6 | 429 | 18 | 1 | 1 | 429 | 1 | 428 | 3.00E-223 | 784.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052222.t1 | Q9SLH0 | 61.3 | 279 | 94 | 5 | 10 | 280 | 28 | 300 | 1.1e-90 | 335.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052222.t1 | G7J4B1 | 95.6 | 429 | 18 | 1 | 1 | 429 | 1 | 428 | 2.1e-223 | 784.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052222.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052222.t1 | MTR_3g087530 | 95.338 | 429 | 19 | 1 | 1 | 429 | 1 | 428 | 0.0 | 786 |
| MS.gene052222.t1 | MTR_8g091370 | 51.747 | 458 | 172 | 8 | 1 | 423 | 1 | 444 | 2.32e-147 | 426 |
| MS.gene052222.t1 | MTR_5g087790 | 56.230 | 313 | 113 | 7 | 22 | 326 | 39 | 335 | 2.91e-112 | 342 |
| MS.gene052222.t1 | MTR_3g078770 | 57.383 | 298 | 103 | 6 | 2 | 280 | 9 | 301 | 9.68e-110 | 337 |
| MS.gene052222.t1 | MTR_2g098470 | 54.237 | 295 | 114 | 6 | 27 | 305 | 33 | 322 | 1.08e-100 | 313 |
| MS.gene052222.t1 | MTR_6g060600 | 48.540 | 274 | 120 | 6 | 16 | 280 | 26 | 287 | 5.08e-86 | 276 |
| MS.gene052222.t1 | MTR_6g460640 | 48.175 | 274 | 121 | 6 | 16 | 280 | 26 | 287 | 8.94e-86 | 275 |
| MS.gene052222.t1 | MTR_3g010790 | 50.495 | 202 | 90 | 3 | 83 | 280 | 1 | 196 | 1.47e-69 | 228 |
| MS.gene052222.t1 | MTR_1g024420 | 46.078 | 102 | 50 | 2 | 29 | 125 | 7 | 108 | 2.91e-24 | 97.4 |
| MS.gene052222.t1 | MTR_7g095580 | 41.250 | 80 | 43 | 1 | 72 | 151 | 1 | 76 | 8.19e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052222.t1 | AT5G65100 | 61.679 | 274 | 87 | 1 | 27 | 282 | 33 | 306 | 2.13e-120 | 362 |
| MS.gene052222.t1 | AT5G10120 | 54.242 | 330 | 139 | 5 | 25 | 349 | 16 | 338 | 1.74e-119 | 356 |
| MS.gene052222.t1 | AT2G27050 | 61.290 | 279 | 94 | 5 | 10 | 280 | 28 | 300 | 1.80e-114 | 347 |
| MS.gene052222.t1 | AT3G20770 | 57.285 | 302 | 105 | 8 | 13 | 304 | 31 | 318 | 1.94e-109 | 336 |
| MS.gene052222.t1 | AT1G73730 | 48.773 | 326 | 145 | 6 | 4 | 323 | 11 | 320 | 1.77e-99 | 308 |
| MS.gene052222.t1 | AT1G73730 | 48.916 | 323 | 143 | 6 | 7 | 323 | 2 | 308 | 3.51e-99 | 307 |
| MS.gene052222.t1 | AT5G21120 | 47.826 | 253 | 125 | 2 | 36 | 281 | 59 | 311 | 1.35e-77 | 250 |
| MS.gene052222.t1 | AT5G21120 | 47.826 | 253 | 125 | 2 | 36 | 281 | 52 | 304 | 1.36e-77 | 250 |
| MS.gene052222.t1 | AT5G21120 | 47.826 | 253 | 125 | 2 | 36 | 281 | 52 | 304 | 1.36e-77 | 250 |
Find 93 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTACAATAGACAATTTA+TGG | 0.077687 | 3.2:-74671306 | None:intergenic |
| GAGATTGAAGGTGGGAAATT+TGG | 0.186624 | 3.2:+74671535 | MS.gene052222:CDS |
| TGTTGATGATTGGTTGAAAA+TGG | 0.189311 | 3.2:+74671510 | MS.gene052222:CDS |
| AGAAGATGTATGTAAGAATT+TGG | 0.224002 | 3.2:-74670899 | None:intergenic |
| AAGGTGGTGGGCCTTGTTCT+TGG | 0.225823 | 3.2:-74671078 | None:intergenic |
| AAAACATATGTCACCTGATT+TGG | 0.233366 | 3.2:+74671159 | MS.gene052222:CDS |
| AGGTCATGTGGTTTCTTATA+AGG | 0.240985 | 3.2:-74671097 | None:intergenic |
| CACCTGATTTGGAGAAATTA+AGG | 0.264068 | 3.2:+74671170 | MS.gene052222:CDS |
| GCATCACAATCAAGCAAATT+AGG | 0.277177 | 3.2:-74671475 | None:intergenic |
| TTCCTTAATTTCTCCAAATC+AGG | 0.277968 | 3.2:-74671172 | None:intergenic |
| GGCCCACAGGATTAGAAAAT+TGG | 0.318543 | 3.2:+74671032 | MS.gene052222:CDS |
| GAAACCACATGACCTTAAAA+AGG | 0.331860 | 3.2:+74671105 | MS.gene052222:CDS |
| AGACAATTTATGGCATTTAT+CGG | 0.339024 | 3.2:-74671296 | None:intergenic |
| TAAAATGTTCATCTTCTTGA+AGG | 0.356058 | 3.2:-74670859 | None:intergenic |
| AGGTGGTGGGCCTTGTTCTT+GGG | 0.363001 | 3.2:-74671077 | None:intergenic |
| GGCATGGAAAGTTTCTGTTT+TGG | 0.364875 | 3.2:+74671126 | MS.gene052222:CDS |
| ATCTACCTCTTCAGTTCCTT+CGG | 0.367358 | 3.2:-74670489 | None:intergenic |
| GCGGCAATCGAAATGGTAAA+AGG | 0.387494 | 3.2:+74671607 | MS.gene052222:CDS |
| GAGTTGAATCTTGTAAATCT+TGG | 0.394723 | 3.2:-74670922 | None:intergenic |
| TTTGGAGAAATTAAGGAAGT+TGG | 0.395073 | 3.2:+74671177 | MS.gene052222:CDS |
| GAAAAGGGTAAACCAGTATC+AGG | 0.402465 | 3.2:+74670749 | MS.gene052222:CDS |
| GATTCCATAAACAAAACCTT+TGG | 0.403082 | 3.2:-74670720 | None:intergenic |
| AGTGAAGAAATTGATCCTTA+TGG | 0.408727 | 3.2:+74670458 | MS.gene052222:CDS |
| CCTTCGGCTTCCGCGCCATA+AGG | 0.409758 | 3.2:-74670473 | None:intergenic |
| GATTTACAAGATTCAACTCT+TGG | 0.415106 | 3.2:+74670926 | MS.gene052222:CDS |
| TTATGGAATCATCCCTGAAA+AGG | 0.418370 | 3.2:+74670733 | MS.gene052222:CDS |
| TGTGGTTTCTTATAAGGTGG+TGG | 0.433405 | 3.2:-74671091 | None:intergenic |
| GAATTGAAAATGTTGATGAT+TGG | 0.439281 | 3.2:+74671500 | MS.gene052222:CDS |
| GTTGATGATTGGTTGAAAAT+GGG | 0.440872 | 3.2:+74671511 | MS.gene052222:CDS |
| CTATCAGAAGAACCTGATAC+TGG | 0.447835 | 3.2:-74670761 | None:intergenic |
| CAAATACATGGCAAAGATCA+TGG | 0.447987 | 3.2:+74670685 | MS.gene052222:CDS |
| GTAGTAACAGAAGTGAGAAA+AGG | 0.454452 | 3.2:+74671365 | MS.gene052222:CDS |
| ATTCGAAGCGGCAATCGAAA+TGG | 0.459117 | 3.2:+74671600 | MS.gene052222:CDS |
| AATCAAGAAGAAGCTTTGCT+TGG | 0.469320 | 3.2:+74671268 | MS.gene052222:CDS |
| TGTTCATCTTCTTGAAGGAT+AGG | 0.475070 | 3.2:-74670854 | None:intergenic |
| CATTCTATTTAGTCTTGCGC+TGG | 0.480486 | 3.2:-74671721 | None:intergenic |
| CTGCAAGAGATAGTGCTACT+TGG | 0.489905 | 3.2:+74671233 | MS.gene052222:CDS |
| TTGAAGGTGGGAAATTTGGA+TGG | 0.490896 | 3.2:+74671539 | MS.gene052222:CDS |
| TATGGAATCATCCCTGAAAA+GGG | 0.513987 | 3.2:+74670734 | MS.gene052222:CDS |
| GTGGTTTCTTATAAGGTGGT+GGG | 0.519151 | 3.2:-74671090 | None:intergenic |
| GTGGGGTGAACAAGGTCTGT+TGG | 0.522121 | 3.2:+74671054 | MS.gene052222:CDS |
| TCTCCTCCATGGTGGCCCAC+AGG | 0.524329 | 3.2:+74671019 | MS.gene052222:CDS |
| TTGAAAATGGGAGAGATTGA+AGG | 0.525609 | 3.2:+74671523 | MS.gene052222:CDS |
| CAAAACAAGAAGCATCAAGA+AGG | 0.533135 | 3.2:+74670630 | MS.gene052222:CDS |
| AGAGGGGAATTTCTCCTCCA+TGG | 0.534345 | 3.2:+74671008 | MS.gene052222:CDS |
| TCCGCAGAGTAAGTTACCTA+TGG | 0.540781 | 3.2:+74671426 | MS.gene052222:CDS |
| GTAGAGGAAGGTGAAAGCTC+TGG | 0.542132 | 3.2:+74671322 | MS.gene052222:CDS |
| GAAAATTGGTGGGGTGAACA+AGG | 0.545195 | 3.2:+74671046 | MS.gene052222:CDS |
| CCACAGGATTAGAAAATTGG+TGG | 0.547684 | 3.2:+74671035 | MS.gene052222:CDS |
| CTTCTGATAGTTTACGCAAG+TGG | 0.551557 | 3.2:+74670774 | MS.gene052222:CDS |
| AACAGAAAGTGTGGACTATG+AGG | 0.556253 | 3.2:+74670520 | MS.gene052222:CDS |
| TGAAGGTGGGAAATTTGGAT+GGG | 0.560628 | 3.2:+74671540 | MS.gene052222:CDS |
| GGTCTGTTGGCCCAAGAACA+AGG | 0.567933 | 3.2:+74671067 | MS.gene052222:CDS |
| CCATAAATTGTCTATTGTAG+AGG | 0.575509 | 3.2:+74671306 | MS.gene052222:CDS |
| CTGATAGTTTACGCAAGTGG+TGG | 0.578313 | 3.2:+74670777 | MS.gene052222:CDS |
| AAAATGGGAGAGATTGAAGG+TGG | 0.578746 | 3.2:+74671526 | MS.gene052222:CDS |
| AGGAGCTGAAGAAACGTATG+TGG | 0.578948 | 3.2:+74670540 | MS.gene052222:CDS |
| TCTAATCCTGTGGGCCACCA+TGG | 0.579340 | 3.2:-74671025 | None:intergenic |
| TGATCAAAGTGCACCACTCG+CGG | 0.580612 | 3.2:+74670817 | MS.gene052222:CDS |
| CCTTATGGCGCGGAAGCCGA+AGG | 0.583226 | 3.2:+74670473 | MS.gene052222:CDS |
| CACAGGATTAGAAAATTGGT+GGG | 0.587810 | 3.2:+74671036 | MS.gene052222:CDS |
| GAGGAGGTTTCCACTCGAGA+GGG | 0.588256 | 3.2:+74670991 | MS.gene052222:CDS |
| AAATGGGAGAGATTGAAGGT+GGG | 0.590105 | 3.2:+74671527 | MS.gene052222:CDS |
| GTTGTTAAACTCATAGCCAT+AGG | 0.592800 | 3.2:-74671442 | None:intergenic |
| GTGGTGCACTTTGATCAAAA+CGG | 0.595848 | 3.2:-74670811 | None:intergenic |
| TGAAACTGAAACAGAAAGTG+TGG | 0.596612 | 3.2:+74670511 | MS.gene052222:CDS |
| GGAGAAATTCCCCTCTCGAG+TGG | 0.599812 | 3.2:-74671001 | None:intergenic |
| TCATGTGGTTTCTTATAAGG+TGG | 0.601388 | 3.2:-74671094 | None:intergenic |
| AGTGGAAACCTCCTCTGTGG+TGG | 0.601734 | 3.2:-74670983 | None:intergenic |
| TTGGATGGGATGTTGAACAT+TGG | 0.603559 | 3.2:+74671554 | MS.gene052222:CDS |
| GCATAATCTACATGATCAAG+AGG | 0.603727 | 3.2:+74671663 | MS.gene052222:CDS |
| GCTGAAGAAACGTATGTGGA+AGG | 0.612562 | 3.2:+74670544 | MS.gene052222:CDS |
| AAGCAAATTAGGAACACGAT+GGG | 0.617311 | 3.2:-74671464 | None:intergenic |
| AAATTGTCTATTGTAGAGGA+AGG | 0.619180 | 3.2:+74671310 | MS.gene052222:CDS |
| AGATTCAGTACTCAAATACA+TGG | 0.630198 | 3.2:+74670673 | MS.gene052222:CDS |
| AGAGGAGGTTTCCACTCGAG+AGG | 0.641374 | 3.2:+74670990 | MS.gene052222:CDS |
| TGAACATTGGCTGAATGATG+TGG | 0.642242 | 3.2:+74671567 | MS.gene052222:CDS |
| ATGGATGTATGCAAAGCCAA+AGG | 0.644473 | 3.2:+74670704 | MS.gene052222:CDS |
| GGTAAAAGGTAATCATAACA+TGG | 0.646961 | 3.2:+74671621 | MS.gene052222:CDS |
| CAAGCAAATTAGGAACACGA+TGG | 0.654501 | 3.2:-74671465 | None:intergenic |
| GGAAGCCGAAGGAACTGAAG+AGG | 0.657866 | 3.2:+74670484 | MS.gene052222:CDS |
| TTCTTCACTGATCACCACCA+TGG | 0.663634 | 3.2:-74670444 | None:intergenic |
| GGGGAATTTCTCCTCCATGG+TGG | 0.664010 | 3.2:+74671011 | MS.gene052222:CDS |
| GAGGAAGGTGAAAGCTCTGG+CGG | 0.666246 | 3.2:+74671325 | MS.gene052222:CDS |
| AGGAGGTTTCCACTCGAGAG+GGG | 0.673102 | 3.2:+74670992 | MS.gene052222:CDS |
| AATCCTGTGGGCCACCATGG+AGG | 0.673179 | 3.2:-74671022 | None:intergenic |
| TCGAGTGGAAACCTCCTCTG+TGG | 0.673267 | 3.2:-74670986 | None:intergenic |
| ACTGTGTGCCACCACAGAGG+AGG | 0.682764 | 3.2:+74670975 | MS.gene052222:CDS |
| ACAGGATTAGAAAATTGGTG+GGG | 0.694629 | 3.2:+74671037 | MS.gene052222:CDS |
| AGAAATTGATCCTTATGGCG+CGG | 0.694845 | 3.2:+74670463 | MS.gene052222:CDS |
| GCCATAGGTAACTTACTCTG+CGG | 0.696224 | 3.2:-74671427 | None:intergenic |
| GGATGATCATGAATTCGAAG+CGG | 0.715431 | 3.2:+74671588 | MS.gene052222:CDS |
| AACACTGTGTGCCACCACAG+AGG | 0.743629 | 3.2:+74670972 | MS.gene052222:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAACATTTTAATACTATAA+TGG | + | chr3.2:74670871-74670890 | MS.gene052222:CDS | 15.0% |
| !!! | TTTCTTTGAACTTTTGTAAA+AGG | - | chr3.2:74670577-74670596 | None:intergenic | 20.0% |
| ! | AAGAGGAAGAAAAATCTATT+TGG | + | chr3.2:74671680-74671699 | MS.gene052222:CDS | 25.0% |
| ! | AGAAGATGTATGTAAGAATT+TGG | - | chr3.2:74670902-74670921 | None:intergenic | 25.0% |
| ! | AGACAATTTATGGCATTTAT+CGG | - | chr3.2:74671299-74671318 | None:intergenic | 25.0% |
| ! | AGAGGAAGAAAAATCTATTT+GGG | + | chr3.2:74671681-74671700 | MS.gene052222:CDS | 25.0% |
| ! | TAAAATGTTCATCTTCTTGA+AGG | - | chr3.2:74670862-74670881 | None:intergenic | 25.0% |
| !! | ATGGATTTTACTCAAAATCA+AGG | + | chr3.2:74671640-74671659 | MS.gene052222:CDS | 25.0% |
| !! | TGGATTTTACTCAAAATCAA+GGG | + | chr3.2:74671641-74671660 | MS.gene052222:CDS | 25.0% |
| !!! | GAATTGAAAATGTTGATGAT+TGG | + | chr3.2:74671500-74671519 | MS.gene052222:CDS | 25.0% |
| AAAACATATGTCACCTGATT+TGG | + | chr3.2:74671159-74671178 | MS.gene052222:CDS | 30.0% | |
| AAATTGTCTATTGTAGAGGA+AGG | + | chr3.2:74671310-74671329 | MS.gene052222:CDS | 30.0% | |
| AGATTCAGTACTCAAATACA+TGG | + | chr3.2:74670673-74670692 | MS.gene052222:CDS | 30.0% | |
| AGTGAAGAAATTGATCCTTA+TGG | + | chr3.2:74670458-74670477 | MS.gene052222:CDS | 30.0% | |
| CCATAAATTGTCTATTGTAG+AGG | + | chr3.2:74671306-74671325 | MS.gene052222:CDS | 30.0% | |
| CCTCTACAATAGACAATTTA+TGG | - | chr3.2:74671309-74671328 | None:intergenic | 30.0% | |
| GAGTTGAATCTTGTAAATCT+TGG | - | chr3.2:74670925-74670944 | None:intergenic | 30.0% | |
| GATTCCATAAACAAAACCTT+TGG | - | chr3.2:74670723-74670742 | None:intergenic | 30.0% | |
| GATTTACAAGATTCAACTCT+TGG | + | chr3.2:74670926-74670945 | MS.gene052222:CDS | 30.0% | |
| GGTAAAAGGTAATCATAACA+TGG | + | chr3.2:74671621-74671640 | MS.gene052222:CDS | 30.0% | |
| TTCCTTAATTTCTCCAAATC+AGG | - | chr3.2:74671175-74671194 | None:intergenic | 30.0% | |
| TTTGGAGAAATTAAGGAAGT+TGG | + | chr3.2:74671177-74671196 | MS.gene052222:CDS | 30.0% | |
| ! | AAACTTTCCATGCCTTTTTA+AGG | - | chr3.2:74671120-74671139 | None:intergenic | 30.0% |
| !! | GTTGATGATTGGTTGAAAAT+GGG | + | chr3.2:74671511-74671530 | MS.gene052222:CDS | 30.0% |
| !! | TGTTGATGATTGGTTGAAAA+TGG | + | chr3.2:74671510-74671529 | MS.gene052222:CDS | 30.0% |
| !!! | AAAGCCAAAGGTTTTGTTTA+TGG | + | chr3.2:74670716-74670735 | MS.gene052222:CDS | 30.0% |
| !!! | AAGTTTGTTTTTGATGTTGG+TGG | + | chr3.2:74671388-74671407 | MS.gene052222:CDS | 30.0% |
| !!! | AGGAAGTTTGTTTTTGATGT+TGG | + | chr3.2:74671385-74671404 | MS.gene052222:CDS | 30.0% |
| AAGCAAATTAGGAACACGAT+GGG | - | chr3.2:74671467-74671486 | None:intergenic | 35.0% | |
| AATCAAGAAGAAGCTTTGCT+TGG | + | chr3.2:74671268-74671287 | MS.gene052222:CDS | 35.0% | |
| ACAGGATTAGAAAATTGGTG+GGG | + | chr3.2:74671037-74671056 | MS.gene052222:CDS | 35.0% | |
| AGGTCATGTGGTTTCTTATA+AGG | - | chr3.2:74671100-74671119 | None:intergenic | 35.0% | |
| CAAATACATGGCAAAGATCA+TGG | + | chr3.2:74670685-74670704 | MS.gene052222:CDS | 35.0% | |
| CACAGGATTAGAAAATTGGT+GGG | + | chr3.2:74671036-74671055 | MS.gene052222:CDS | 35.0% | |
| GAAACCACATGACCTTAAAA+AGG | + | chr3.2:74671105-74671124 | MS.gene052222:CDS | 35.0% | |
| GCATAATCTACATGATCAAG+AGG | + | chr3.2:74671663-74671682 | MS.gene052222:CDS | 35.0% | |
| GCATCACAATCAAGCAAATT+AGG | - | chr3.2:74671478-74671497 | None:intergenic | 35.0% | |
| GTAGTAACAGAAGTGAGAAA+AGG | + | chr3.2:74671365-74671384 | MS.gene052222:CDS | 35.0% | |
| GTTGTTAAACTCATAGCCAT+AGG | - | chr3.2:74671445-74671464 | None:intergenic | 35.0% | |
| TATGGAATCATCCCTGAAAA+GGG | + | chr3.2:74670734-74670753 | MS.gene052222:CDS | 35.0% | |
| TCATGTGGTTTCTTATAAGG+TGG | - | chr3.2:74671097-74671116 | None:intergenic | 35.0% | |
| TGAAACTGAAACAGAAAGTG+TGG | + | chr3.2:74670511-74670530 | MS.gene052222:CDS | 35.0% | |
| TGTTCATCTTCTTGAAGGAT+AGG | - | chr3.2:74670857-74670876 | None:intergenic | 35.0% | |
| TTATGGAATCATCCCTGAAA+AGG | + | chr3.2:74670733-74670752 | MS.gene052222:CDS | 35.0% | |
| TTGAAAATGGGAGAGATTGA+AGG | + | chr3.2:74671523-74671542 | MS.gene052222:CDS | 35.0% | |
| ! | CACCAATTTTCTAATCCTGT+GGG | - | chr3.2:74671037-74671056 | None:intergenic | 35.0% |
| !! | CAAAACAAGAAGCATCAAGA+AGG | + | chr3.2:74670630-74670649 | MS.gene052222:CDS | 35.0% |
| !! | CACCTGATTTGGAGAAATTA+AGG | + | chr3.2:74671170-74671189 | MS.gene052222:CDS | 35.0% |
| !!! | ATACTGGTTTACCCTTTTCA+GGG | - | chr3.2:74670748-74670767 | None:intergenic | 35.0% |
| AAAATGGGAGAGATTGAAGG+TGG | + | chr3.2:74671526-74671545 | MS.gene052222:CDS | 40.0% | |
| AAATGGGAGAGATTGAAGGT+GGG | + | chr3.2:74671527-74671546 | MS.gene052222:CDS | 40.0% | |
| AGAAATTGATCCTTATGGCG+CGG | + | chr3.2:74670463-74670482 | MS.gene052222:CDS | 40.0% | |
| ATCTACCTCTTCAGTTCCTT+CGG | - | chr3.2:74670492-74670511 | None:intergenic | 40.0% | |
| ATGGATGTATGCAAAGCCAA+AGG | + | chr3.2:74670704-74670723 | MS.gene052222:CDS | 40.0% | |
| CAAGCAAATTAGGAACACGA+TGG | - | chr3.2:74671468-74671487 | None:intergenic | 40.0% | |
| CACATGACCTTAAAAAGGCA+TGG | + | chr3.2:74671110-74671129 | MS.gene052222:CDS | 40.0% | |
| CCACAGGATTAGAAAATTGG+TGG | + | chr3.2:74671035-74671054 | MS.gene052222:CDS | 40.0% | |
| CTATCAGAAGAACCTGATAC+TGG | - | chr3.2:74670764-74670783 | None:intergenic | 40.0% | |
| CTTCTGATAGTTTACGCAAG+TGG | + | chr3.2:74670774-74670793 | MS.gene052222:CDS | 40.0% | |
| GAAAAGGGTAAACCAGTATC+AGG | + | chr3.2:74670749-74670768 | MS.gene052222:CDS | 40.0% | |
| GAGATTGAAGGTGGGAAATT+TGG | + | chr3.2:74671535-74671554 | MS.gene052222:CDS | 40.0% | |
| GGATGATCATGAATTCGAAG+CGG | + | chr3.2:74671588-74671607 | MS.gene052222:CDS | 40.0% | |
| GTGGTGCACTTTGATCAAAA+CGG | - | chr3.2:74670814-74670833 | None:intergenic | 40.0% | |
| GTGGTTTCTTATAAGGTGGT+GGG | - | chr3.2:74671093-74671112 | None:intergenic | 40.0% | |
| TGAAGGTGGGAAATTTGGAT+GGG | + | chr3.2:74671540-74671559 | MS.gene052222:CDS | 40.0% | |
| TGTGGTTTCTTATAAGGTGG+TGG | - | chr3.2:74671094-74671113 | None:intergenic | 40.0% | |
| TTGAAGGTGGGAAATTTGGA+TGG | + | chr3.2:74671539-74671558 | MS.gene052222:CDS | 40.0% | |
| TTGGATGGGATGTTGAACAT+TGG | + | chr3.2:74671554-74671573 | MS.gene052222:CDS | 40.0% | |
| ! | AACAGAAAGTGTGGACTATG+AGG | + | chr3.2:74670520-74670539 | MS.gene052222:CDS | 40.0% |
| ! | CCACCAATTTTCTAATCCTG+TGG | - | chr3.2:74671038-74671057 | None:intergenic | 40.0% |
| ! | GGCATGGAAAGTTTCTGTTT+TGG | + | chr3.2:74671126-74671145 | MS.gene052222:CDS | 40.0% |
| ! | TGAACATTGGCTGAATGATG+TGG | + | chr3.2:74671567-74671586 | MS.gene052222:CDS | 40.0% |
| !!! | CATGCCTTTTTAAGGTCATG+TGG | - | chr3.2:74671112-74671131 | None:intergenic | 40.0% |
| !!! | GATACTGGTTTACCCTTTTC+AGG | - | chr3.2:74670749-74670768 | None:intergenic | 40.0% |
| !!! | TCTTGTTTTGCTTGTTGCTC+AGG | - | chr3.2:74670620-74670639 | None:intergenic | 40.0% |
| AGGAGCTGAAGAAACGTATG+TGG | + | chr3.2:74670540-74670559 | MS.gene052222:CDS | 45.0% | |
| ATTCGAAGCGGCAATCGAAA+TGG | + | chr3.2:74671600-74671619 | MS.gene052222:CDS | 45.0% | |
| CTGATAGTTTACGCAAGTGG+TGG | + | chr3.2:74670777-74670796 | MS.gene052222:CDS | 45.0% | |
| GAAAATTGGTGGGGTGAACA+AGG | + | chr3.2:74671046-74671065 | MS.gene052222:CDS | 45.0% | |
| GCCATAGGTAACTTACTCTG+CGG | - | chr3.2:74671430-74671449 | None:intergenic | 45.0% | |
| GCGGCAATCGAAATGGTAAA+AGG | + | chr3.2:74671607-74671626 | MS.gene052222:CDS | 45.0% | |
| GCTGAAGAAACGTATGTGGA+AGG | + | chr3.2:74670544-74670563 | MS.gene052222:CDS | 45.0% | |
| GGCCCACAGGATTAGAAAAT+TGG | + | chr3.2:74671032-74671051 | MS.gene052222:CDS | 45.0% | |
| TCCGCAGAGTAAGTTACCTA+TGG | + | chr3.2:74671426-74671445 | MS.gene052222:CDS | 45.0% | |
| ! | AAGTATTTTGCAACCGCGAG+TGG | - | chr3.2:74670833-74670852 | None:intergenic | 45.0% |
| ! | CTGCAAGAGATAGTGCTACT+TGG | + | chr3.2:74671233-74671252 | MS.gene052222:CDS | 45.0% |
| AGAGGGGAATTTCTCCTCCA+TGG | + | chr3.2:74671008-74671027 | MS.gene052222:CDS | 50.0% | |
| GTAGAGGAAGGTGAAAGCTC+TGG | + | chr3.2:74671322-74671341 | MS.gene052222:CDS | 50.0% | |
| TGATCAAAGTGCACCACTCG+CGG | + | chr3.2:74670817-74670836 | MS.gene052222:CDS | 50.0% | |
| AACACTGTGTGCCACCACAG+AGG | + | chr3.2:74670972-74670991 | MS.gene052222:CDS | 55.0% | |
| AGAGGAGGTTTCCACTCGAG+AGG | + | chr3.2:74670990-74671009 | MS.gene052222:CDS | 55.0% | |
| AGGAGGTTTCCACTCGAGAG+GGG | + | chr3.2:74670992-74671011 | MS.gene052222:CDS | 55.0% | |
| AGTGGAAACCTCCTCTGTGG+TGG | - | chr3.2:74670986-74671005 | None:intergenic | 55.0% | |
| GAGGAGGTTTCCACTCGAGA+GGG | + | chr3.2:74670991-74671010 | MS.gene052222:CDS | 55.0% | |
| GGAAGCCGAAGGAACTGAAG+AGG | + | chr3.2:74670484-74670503 | MS.gene052222:CDS | 55.0% | |
| GGAGAAATTCCCCTCTCGAG+TGG | - | chr3.2:74671004-74671023 | None:intergenic | 55.0% | |
| GGGGAATTTCTCCTCCATGG+TGG | + | chr3.2:74671011-74671030 | MS.gene052222:CDS | 55.0% | |
| GGTCTGTTGGCCCAAGAACA+AGG | + | chr3.2:74671067-74671086 | MS.gene052222:CDS | 55.0% | |
| GTGGGGTGAACAAGGTCTGT+TGG | + | chr3.2:74671054-74671073 | MS.gene052222:CDS | 55.0% | |
| TCGAGTGGAAACCTCCTCTG+TGG | - | chr3.2:74670989-74671008 | None:intergenic | 55.0% | |
| TCTAATCCTGTGGGCCACCA+TGG | - | chr3.2:74671028-74671047 | None:intergenic | 55.0% | |
| ! | GAGGAAGGTGAAAGCTCTGG+CGG | + | chr3.2:74671325-74671344 | MS.gene052222:CDS | 55.0% |
| !! | AAGGTGGTGGGCCTTGTTCT+TGG | - | chr3.2:74671081-74671100 | None:intergenic | 55.0% |
| !! | AGGTGGTGGGCCTTGTTCTT+GGG | - | chr3.2:74671080-74671099 | None:intergenic | 55.0% |
| AATCCTGTGGGCCACCATGG+AGG | - | chr3.2:74671025-74671044 | None:intergenic | 60.0% | |
| ACTGTGTGCCACCACAGAGG+AGG | + | chr3.2:74670975-74670994 | MS.gene052222:CDS | 60.0% | |
| CCTTATGGCGCGGAAGCCGA+AGG | + | chr3.2:74670473-74670492 | MS.gene052222:CDS | 65.0% | |
| CCTTCGGCTTCCGCGCCATA+AGG | - | chr3.2:74670476-74670495 | None:intergenic | 65.0% | |
| TCTCCTCCATGGTGGCCCAC+AGG | + | chr3.2:74671019-74671038 | MS.gene052222:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 74670446 | 74671735 | 74670446 | ID=MS.gene052222 |
| chr3.2 | mRNA | 74670446 | 74671735 | 74670446 | ID=MS.gene052222.t1;Parent=MS.gene052222 |
| chr3.2 | exon | 74670446 | 74671735 | 74670446 | ID=MS.gene052222.t1.exon1;Parent=MS.gene052222.t1 |
| chr3.2 | CDS | 74670446 | 74671735 | 74670446 | ID=cds.MS.gene052222.t1;Parent=MS.gene052222.t1 |
| Gene Sequence |
| Protein sequence |
