AlfalfaGEDB | MS.gene052343

M. sativa cultivar XinJiangDaYe / MS.gene052343

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052343.t1	AES63738.2	85.2	122	18	0	1	122	1	122	2.00E-55	224.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052343.t1	G7INX6	85.2	122	18	0	1	122	1	122	1.4e-55	224.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene052343.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052343.t1	MTR_2g012700	85.246	122	18	0	1	122	1	122	5.08e-75	218
MS.gene052343.t1	MTR_2g062330	81.667	120	21	1	3	122	23	141	3.51e-68	202
MS.gene052343.t1	MTR_7g117590	35.385	130	65	4	7	119	44	171	6.47e-21	82.8
MS.gene052343.t1	MTR_7g117585	36.634	101	62	1	18	116	42	142	4.90e-18	74.7
MS.gene052343.t1	MTR_0010s0310	41.758	91	51	1	22	110	150	240	1.28e-17	75.9
MS.gene052343.t1	MTR_3g008190	29.897	97	68	0	24	120	6	102	1.59e-16	69.7
MS.gene052343.t1	MTR_5g071410	34.653	101	64	1	18	116	165	265	3.58e-15	69.7
MS.gene052343.t1	MTR_6g477950	37.037	81	51	0	39	119	64	144	1.10e-13	65.9
MS.gene052343.t1	MTR_0010s0320	37.363	91	53	2	24	110	192	282	7.13e-13	63.5
MS.gene052343.t1	MTR_6g087720	33.721	86	56	1	24	108	214	299	1.10e-12	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 23 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCGATGTTCATTAT+TGG	0.199581	4.4:-33576267	MS.gene052343:CDS
AAGTCAATGGTGCTGAATTA+GGG	0.416476	4.4:-33576297	MS.gene052343:CDS
ACGGTAGCATACATCCTATT+AGG	0.440754	4.4:+33575891	None:intergenic
AGAAATACATAGGGAGAGGA+TGG	0.573439	4.4:-33575980	MS.gene052343:CDS
AGCATGGATCAGAAATACAT+AGG	0.564126	4.4:-33575990	MS.gene052343:CDS
ATACTTCCAATAATGAACAT+CGG	0.646998	4.4:+33576261	None:intergenic
ATTGGTATACAAACCATTCT+CGG	0.470714	4.4:+33576085	None:intergenic
CCATTCTCGGCAACACGTCG+AGG	0.599354	4.4:+33576098	None:intergenic
CCTCGACGTGTTGCCGAGAA+TGG	0.307864	4.4:-33576098	MS.gene052343:CDS
CGGTCAATAATCCTCCTAAT+AGG	0.355854	4.4:-33575905	MS.gene052343:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGGTATACAAACCATTCT+CGG	+	chr4.4:33576109-33576128	None:intergenic	30.0%
TACCAGTTTCTTCATCAAAA+AGG	+	chr4.4:33576146-33576165	None:intergenic	30.0%
AGCATGGATCAGAAATACAT+AGG	-	chr4.4:33576201-33576220	MS.gene052343:intron	35.0%
GCATGGATCAGAAATACATA+GGG	-	chr4.4:33576202-33576221	MS.gene052343:intron	35.0%
ACGGTAGCATACATCCTATT+AGG	+	chr4.4:33576303-33576322	None:intergenic	40.0%
AGAAATACATAGGGAGAGGA+TGG	-	chr4.4:33576211-33576230	MS.gene052343:intron	40.0%
CGGTCAATAATCCTCCTAAT+AGG	-	chr4.4:33576286-33576305	MS.gene052343:CDS	40.0%
GAGATTGGAGTTGAAGTCAA+TGG	-	chr4.4:33575881-33575900	MS.gene052343:CDS	40.0%
GATCAGAAATACATAGGGAG+AGG	-	chr4.4:33576207-33576226	MS.gene052343:intron	40.0%
GTAGCATACATCCTATTAGG+AGG	+	chr4.4:33576300-33576319	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	33575875	33576338	33575875	ID=MS.gene052343
chr4.4	mRNA	33575875	33576338	33575875	ID=MS.gene052343.t1;Parent=MS.gene052343
chr4.4	exon	33576222	33576338	33576222	ID=MS.gene052343.t1.exon1;Parent=MS.gene052343.t1
chr4.4	CDS	33576222	33576338	33576222	ID=cds.MS.gene052343.t1;Parent=MS.gene052343.t1
chr4.4	exon	33575875	33576126	33575875	ID=MS.gene052343.t1.exon2;Parent=MS.gene052343.t1
chr4.4	CDS	33575875	33576126	33575875	ID=cds.MS.gene052343.t1;Parent=MS.gene052343.t1

Gene Sequence

>MS.gene052343

ATGAATGAGATTGGAGTTGAAGTCAATGGTGCTGAATTAGGGAATCTTCAAAATTCCGATGTTCATTATTGGAAGTATAATGTTACTGCTTCTATTTTGGATGGAAACAATGTTTTGGTTAGTGGCATTTACGAAGCATTTTTTGTTGTTTTCATGTTAAGTTGTTGTTAATTAATTATAGATTGTATGATTTCTTGACAAATCTATTGTAGAATTTTCCTCGACGTGTTGCCGAGAATGGTTTGTATACCAATCAATCTAAAATTCTCCTTTTTGATGAAGAAACTGGTAAATCTTATGACTGTGATGTTCACACTGCGTCAAGAAGCATGGATCAGAAATACATAGGGAGAGGATGGTACGACTTTGTTCTTGAAAAGTGCCTAAAAGTTGGTGATGTTGTTTTGTTCACGGTCAATAATCCTCCTAATAGGATGTATGCTACCGTCGTTAACTGGGACTGA

Protein sequence

>MS.gene052343.t1

MNEIGVEVNGAELGNLQNSDVHYWKYNVTASILDGNNVLNFPRRVAENGLYTNQSKILLFDEETGKSYDCDVHTASRSMDQKYIGRGWYDFVLEKCLKVGDVVLFTVNNPPNRMYATVVNWD