Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052451.t1 | XP_013453074.1 | 95.6 | 798 | 32 | 1 | 1 | 795 | 1 | 798 | 0.00E+00 | 1394.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052451.t1 | Q55GS2 | 37.6 | 615 | 350 | 13 | 4 | 608 | 2 | 592 | 3.1e-110 | 401.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052451.t1 | A0A072UBV6 | 95.6 | 798 | 32 | 1 | 1 | 795 | 1 | 798 | 0.0e+00 | 1394.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052451.t1 | MTR_6g086565 | 98.997 | 798 | 5 | 1 | 1 | 795 | 1 | 798 | 0.0 | 1608 |
| MS.gene052451.t1 | MTR_6g086565 | 99.354 | 619 | 4 | 0 | 1 | 619 | 1 | 619 | 0.0 | 1257 |
| MS.gene052451.t1 | MTR_1g078330 | 88.421 | 190 | 22 | 0 | 1 | 190 | 1 | 190 | 6.04e-119 | 357 |
| MS.gene052451.t1 | MTR_1g078370 | 76.329 | 207 | 46 | 1 | 587 | 793 | 1 | 204 | 3.26e-92 | 288 |
| MS.gene052451.t1 | MTR_4g030910 | 22.995 | 561 | 367 | 14 | 58 | 575 | 96 | 634 | 3.22e-26 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052451.t1 | AT2G40730 | 79.000 | 800 | 158 | 7 | 1 | 793 | 1 | 797 | 0.0 | 1212 |
| MS.gene052451.t1 | AT1G22870 | 21.165 | 515 | 344 | 10 | 58 | 530 | 96 | 590 | 1.05e-18 | 92.0 |
| MS.gene052451.t1 | AT1G22870 | 21.165 | 515 | 344 | 10 | 58 | 530 | 96 | 590 | 1.17e-18 | 91.7 |
| MS.gene052451.t1 | AT1G71410 | 20.940 | 468 | 309 | 10 | 58 | 483 | 96 | 544 | 1.19e-18 | 91.7 |
| MS.gene052451.t1 | AT1G71410 | 20.940 | 468 | 309 | 10 | 58 | 483 | 96 | 544 | 1.19e-18 | 91.7 |
| MS.gene052451.t1 | AT1G22870 | 21.698 | 424 | 299 | 7 | 133 | 530 | 9 | 425 | 2.39e-17 | 87.4 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAACCTTGGTGGAATTT+TGG | 0.064969 | 6.1:-75406080 | None:intergenic |
| TTAGCTTCTGCCCTTGAATT+TGG | 0.180640 | 6.1:+75399273 | MS.gene052451:CDS |
| ATCCGCTGAGCACCTAATTT+TGG | 0.188714 | 6.1:-75406289 | None:intergenic |
| TTTGACTGCATTGTTGAAAA+TGG | 0.188813 | 6.1:+75399314 | MS.gene052451:CDS |
| CTCCATGGGCCATTGATTCT+TGG | 0.193517 | 6.1:+75397102 | MS.gene052451:CDS |
| TGAAGAAATGACAAAATATT+TGG | 0.211866 | 6.1:-75395718 | None:intergenic |
| ATCCACCAACAACTTCTTTC+AGG | 0.230681 | 6.1:-75395182 | None:intergenic |
| TTATCTGAAAGTGGCATTAC+AGG | 0.240664 | 6.1:-75395805 | None:intergenic |
| GGAAGCTGCTCTGCTAAATT+TGG | 0.248475 | 6.1:-75399118 | None:intergenic |
| ACTTGATTATTCAGGCATTA+TGG | 0.255952 | 6.1:+75401367 | MS.gene052451:intron |
| CCAAGCAAACTTGCATTTCC+TGG | 0.263216 | 6.1:-75402911 | None:intergenic |
| AAACCTGCTGCTCCAAAATT+AGG | 0.271088 | 6.1:+75406277 | MS.gene052451:CDS |
| CTGTCTCAAAGGACCTTGTC+TGG | 0.286397 | 6.1:+75400683 | MS.gene052451:CDS |
| TCCATGGGCCATTGATTCTT+GGG | 0.291032 | 6.1:+75397103 | MS.gene052451:CDS |
| GTTGTCGAATTCAAATTTAA+AGG | 0.302494 | 6.1:-75406163 | None:intergenic |
| CTGAGTAGCCGCTGGTAATC+TGG | 0.310087 | 6.1:-75398173 | None:intergenic |
| CATTGTTGAAAATGGGTTCC+TGG | 0.312737 | 6.1:+75399322 | MS.gene052451:CDS |
| TCTCAAGTCCATGTTAGTTC+TGG | 0.320181 | 6.1:+75399765 | MS.gene052451:CDS |
| ACCCTTCCGCTTGGGGCTCT+TGG | 0.325303 | 6.1:+75395250 | MS.gene052451:CDS |
| CTTTCTATTATAGACAAATA+TGG | 0.328878 | 6.1:+75402847 | MS.gene052451:intron |
| CGGATAAACCGGACATCATC+AGG | 0.330175 | 6.1:+75406307 | MS.gene052451:CDS |
| GCCACTTTCAGATAAGATTC+AGG | 0.330183 | 6.1:+75395813 | MS.gene052451:CDS |
| CTTAGCAGCTGGCCGAGGTC+GGG | 0.342150 | 6.1:+75406249 | MS.gene052451:CDS |
| AAACAGTGATGTTCGATCTA+AGG | 0.342598 | 6.1:+75402119 | MS.gene052451:intron |
| CTTTGTCTATTGCAGGTTCA+TGG | 0.345575 | 6.1:+75396510 | MS.gene052451:intron |
| TCAGATAAGATTCAGGAGTT+AGG | 0.347337 | 6.1:+75395820 | MS.gene052451:CDS |
| CGAACCTTACCCTTCCGCTT+GGG | 0.349078 | 6.1:+75395242 | MS.gene052451:CDS |
| AAAGAAGTTGTTGGTGGATC+TGG | 0.357725 | 6.1:+75395186 | MS.gene052451:CDS |
| TTTAAAGGTCTTGATGTTGC+TGG | 0.361739 | 6.1:-75406148 | None:intergenic |
| GATGGAAGTTTATCAATTCC+AGG | 0.362464 | 6.1:+75402893 | MS.gene052451:CDS |
| AGCTCAAGCTGTTGATGAAC+AGG | 0.365464 | 6.1:+75399557 | MS.gene052451:CDS |
| CCGACCTCGGCCAGCTGCTA+AGG | 0.373064 | 6.1:-75406248 | None:intergenic |
| CAGCTCCTGCGCCCACTACA+AGG | 0.373259 | 6.1:+75406218 | MS.gene052451:CDS |
| CTCCTACATCAACGGATGGC+TGG | 0.376358 | 6.1:+75405453 | MS.gene052451:CDS |
| CTAATCTATGAGCTGTTCTC+TGG | 0.378549 | 6.1:+75397943 | MS.gene052451:CDS |
| TCCTACATCAACGGATGGCT+GGG | 0.381579 | 6.1:+75405454 | MS.gene052451:CDS |
| GTTTACCCTCATGTTGCTAC+TGG | 0.382745 | 6.1:+75399706 | MS.gene052451:CDS |
| AATTTCATTGATGTCATAGT+TGG | 0.383892 | 6.1:-75401408 | None:intergenic |
| GGTAGACACAATACATTTCA+TGG | 0.388081 | 6.1:+75399042 | MS.gene052451:CDS |
| GCCATTGATTCTTGGGGAAT+GGG | 0.389642 | 6.1:+75397110 | MS.gene052451:CDS |
| TAAGGTTCGCCGATGTTGTA+TGG | 0.391413 | 6.1:-75395228 | None:intergenic |
| CCAGGAAATGCAAGTTTGCT+TGG | 0.392495 | 6.1:+75402911 | MS.gene052451:CDS |
| AAAGCATCTATCGAAGTTAC+AGG | 0.393427 | 6.1:+75400715 | MS.gene052451:CDS |
| CTCCGAATTGTTCAATATGT+TGG | 0.396831 | 6.1:-75399524 | None:intergenic |
| CAGGGATGAATATTATGCTT+GGG | 0.398038 | 6.1:+75396356 | MS.gene052451:intron |
| ACAAATATGGCAGAGACTAC+TGG | 0.399143 | 6.1:+75402860 | MS.gene052451:CDS |
| ATTGTGAGTACAACAACATT+AGG | 0.400000 | 6.1:-75401446 | None:intergenic |
| GCAAAGAGTTTAATTATTGT+TGG | 0.401711 | 6.1:-75399468 | None:intergenic |
| CGGTGTTAATTTCAGGATGA+TGG | 0.402052 | 6.1:+75395354 | MS.gene052451:intron |
| CTCCAACATATTGAACAATT+CGG | 0.407638 | 6.1:+75399522 | MS.gene052451:CDS |
| TCAAGGGCAGAAGCTAATAA+AGG | 0.423515 | 6.1:-75399267 | None:intergenic |
| TTCAACAATGCAGTCAAAGC+AGG | 0.425072 | 6.1:-75399309 | None:intergenic |
| TCGGCCAGCTGCTAAGGGCC+TGG | 0.432686 | 6.1:-75406242 | None:intergenic |
| GCATGGTGGTCAGTGAAATC+TGG | 0.432933 | 6.1:-75405422 | None:intergenic |
| TTAGCAGCTGGCCGAGGTCG+GGG | 0.437675 | 6.1:+75406250 | MS.gene052451:CDS |
| GATGTTCTATCAGAGTTTGA+TGG | 0.438526 | 6.1:+75396594 | MS.gene052451:CDS |
| CAGGAAATGCAAGTTTGCTT+GGG | 0.438641 | 6.1:+75402912 | MS.gene052451:CDS |
| AGGGCCAGGCCCTTAGCAGC+TGG | 0.442542 | 6.1:+75406238 | MS.gene052451:CDS |
| CTGGCCCTTGTAGTGGGCGC+AGG | 0.445959 | 6.1:-75406223 | None:intergenic |
| GGCCATTGATTCTTGGGGAA+TGG | 0.447612 | 6.1:+75397109 | MS.gene052451:CDS |
| GACACGGACAGCTCGATCAT+TGG | 0.450921 | 6.1:-75399493 | None:intergenic |
| CTAGAACTCACAGAAGCAAC+TGG | 0.451326 | 6.1:-75404302 | None:intergenic |
| TGCTGGAGCGGGAGCTGCTA+TGG | 0.451558 | 6.1:-75406131 | None:intergenic |
| TCTTCATCCCTGCTCAACCT+TGG | 0.453545 | 6.1:-75406091 | None:intergenic |
| CCTTAGCAGCTGGCCGAGGT+CGG | 0.453563 | 6.1:+75406248 | MS.gene052451:CDS |
| AAATTCCACCAAGGTTGAGC+AGG | 0.454216 | 6.1:+75406083 | MS.gene052451:CDS |
| ATGAGCTCCTTGACTCTAAA+GGG | 0.459180 | 6.1:+75404260 | MS.gene052451:CDS |
| TAGGTGCTCAGCGGATAAAC+CGG | 0.460603 | 6.1:+75406296 | MS.gene052451:CDS |
| CCGCAGCTAAATGTCCATCC+TGG | 0.462680 | 6.1:-75395416 | None:intergenic |
| AGGCCCTTAGCAGCTGGCCG+AGG | 0.465336 | 6.1:+75406244 | MS.gene052451:CDS |
| TTTGAAAGATAGTGTTGAGA+AGG | 0.467964 | 6.1:+75399075 | MS.gene052451:CDS |
| ATTGATGTCATAGTTGGAAC+TGG | 0.469305 | 6.1:-75401402 | None:intergenic |
| ATTCAGGAGTTAGGTCTTGA+AGG | 0.470304 | 6.1:+75395829 | MS.gene052451:CDS |
| TGTTGTTGTCACGCCAACTT+TGG | 0.470386 | 6.1:+75396551 | MS.gene052451:CDS |
| GCGAACCTTACCCTTCCGCT+TGG | 0.471772 | 6.1:+75395241 | MS.gene052451:CDS |
| CATTAGAAGATGTTGGTGTA+AGG | 0.476759 | 6.1:-75404328 | None:intergenic |
| AAGGGCCTGGCCCTTGTAGT+GGG | 0.480173 | 6.1:-75406229 | None:intergenic |
| ATGTTCTATCAGAGTTTGAT+GGG | 0.482527 | 6.1:+75396595 | MS.gene052451:CDS |
| GTTGTTGGTGGATCTGGAAC+TGG | 0.482994 | 6.1:+75395192 | MS.gene052451:CDS |
| CTGCGCCCACTACAAGGGCC+AGG | 0.483015 | 6.1:+75406224 | MS.gene052451:CDS |
| TTGACTGCATTGTTGAAAAT+GGG | 0.485246 | 6.1:+75399315 | MS.gene052451:CDS |
| CAAATAATAAATCACCTGTC+AGG | 0.485509 | 6.1:-75401473 | None:intergenic |
| GGTTCATGGCAATGTTTGCT+TGG | 0.485983 | 6.1:+75396524 | MS.gene052451:intron |
| TCCTGAATCTTATCTGAAAG+TGG | 0.486236 | 6.1:-75395814 | None:intergenic |
| CAACCTGTTTCACAGACAAA+AGG | 0.486565 | 6.1:+75405611 | MS.gene052451:CDS |
| CGACCTCGGCCAGCTGCTAA+GGG | 0.488359 | 6.1:-75406247 | None:intergenic |
| GGTCTTGATGTTGCTGGAGC+GGG | 0.490270 | 6.1:-75406142 | None:intergenic |
| GTTGGCTTTGTTTCTTCAAG+TGG | 0.490626 | 6.1:-75405542 | None:intergenic |
| CATTTAGCTGCGGGTCGTAA+TGG | 0.491773 | 6.1:+75395426 | MS.gene052451:CDS |
| TATGAGCTCCTTGACTCTAA+AGG | 0.491816 | 6.1:+75404259 | MS.gene052451:CDS |
| TAAGGGCCTGGCCCTTGTAG+TGG | 0.492890 | 6.1:-75406230 | None:intergenic |
| CAGCAGCTGAACCAAATTCA+AGG | 0.493179 | 6.1:-75399284 | None:intergenic |
| TTGTCACGCCAACTTTGGAC+TGG | 0.493752 | 6.1:+75396556 | MS.gene052451:CDS |
| TCGTCAGATTGTGTTAAAGA+AGG | 0.495220 | 6.1:+75399141 | MS.gene052451:CDS |
| GAGCCCCAAGCGGAAGGGTA+AGG | 0.495780 | 6.1:-75395246 | None:intergenic |
| GGGATGAAGATGAAGATTTG+TGG | 0.496658 | 6.1:+75406104 | MS.gene052451:CDS |
| CAAATATGGCAGAGACTACT+GGG | 0.496846 | 6.1:+75402861 | MS.gene052451:CDS |
| ATAATTGATTGTTACCTTGG+AGG | 0.496898 | 6.1:-75395289 | None:intergenic |
| GCAGGGATGAATATTATGCT+TGG | 0.497318 | 6.1:+75396355 | MS.gene052451:intron |
| CAACTAATGATGATGATCCA+TGG | 0.500400 | 6.1:+75406185 | MS.gene052451:CDS |
| ACCCATTCCCCAAGAATCAA+TGG | 0.501604 | 6.1:-75397111 | None:intergenic |
| TCATCCCTGCTCAACCTTGG+TGG | 0.502638 | 6.1:-75406088 | None:intergenic |
| TGTGAAACAGGTTGAACAAC+TGG | 0.506071 | 6.1:-75405602 | None:intergenic |
| TTTCCACCTGCTAGAGGAGC+AGG | 0.506104 | 6.1:+75401252 | MS.gene052451:CDS |
| TCCGTTGATGTAGGAGATGT+AGG | 0.506786 | 6.1:-75405446 | None:intergenic |
| GGAGCTGCAATGGCAGCCCA+TGG | 0.507768 | 6.1:-75406202 | None:intergenic |
| CTAATACCTGCTCCTCTAGC+AGG | 0.508317 | 6.1:-75401258 | None:intergenic |
| GAACTCCTCAGCTGAAAGCC+AGG | 0.510223 | 6.1:-75399340 | None:intergenic |
| GAGAAGTCTGACCTTGGGAA+TGG | 0.510862 | 6.1:-75398007 | None:intergenic |
| GCTTGAATGTTAGTAAGAGC+TGG | 0.513816 | 6.1:-75405566 | None:intergenic |
| GAACCTTACCCTTCCGCTTG+GGG | 0.515759 | 6.1:+75395243 | MS.gene052451:CDS |
| AAATTCCTGAAAGAAGTTGT+TGG | 0.517801 | 6.1:+75395177 | MS.gene052451:CDS |
| TGGAGTTTCCAGTCCAAAGT+TGG | 0.518208 | 6.1:-75396564 | None:intergenic |
| CGGAGCTAGCAAAATCCGAC+TGG | 0.519464 | 6.1:+75397060 | MS.gene052451:CDS |
| CAGGTTTGGCTCCCCGACCT+CGG | 0.519595 | 6.1:-75406261 | None:intergenic |
| CAGGATGGACATTTAGCTGC+GGG | 0.519763 | 6.1:+75395417 | MS.gene052451:CDS |
| GGATGAAGATGAAGATTTGT+GGG | 0.520644 | 6.1:+75406105 | MS.gene052451:CDS |
| CCTACATCAACGGATGGCTG+GGG | 0.521802 | 6.1:+75405455 | MS.gene052451:CDS |
| CCGTTGATGTAGGAGATGTA+GGG | 0.523241 | 6.1:-75405445 | None:intergenic |
| ATCATTAAGCATACCTGAGC+TGG | 0.523577 | 6.1:-75404351 | None:intergenic |
| TACTCACAATTGATCCTGAC+AGG | 0.528935 | 6.1:+75401459 | MS.gene052451:CDS |
| GACATCCTCTACGCAAATGC+TGG | 0.529946 | 6.1:+75396626 | MS.gene052451:CDS |
| ACAAATACAACTATCTTGCT+AGG | 0.530207 | 6.1:+75401042 | MS.gene052451:CDS |
| AGCCAAGAGCCCCAAGCGGA+AGG | 0.530407 | 6.1:-75395252 | None:intergenic |
| CGCAGCTAAATGTCCATCCT+GGG | 0.530668 | 6.1:-75395415 | None:intergenic |
| CCATGGGCCATTGATTCTTG+GGG | 0.532546 | 6.1:+75397104 | MS.gene052451:CDS |
| GGGTTCCTGGCTTTCAGCTG+AGG | 0.537536 | 6.1:+75399335 | MS.gene052451:CDS |
| TAAATGTCCATCCTGGGCAT+TGG | 0.537721 | 6.1:-75395409 | None:intergenic |
| TTCCTGAAAGAAGTTGTTGG+TGG | 0.541191 | 6.1:+75395180 | MS.gene052451:CDS |
| GATGTATTTAATCTACGAGA+AGG | 0.543062 | 6.1:-75398203 | None:intergenic |
| TCAACAATGCAGTCAAAGCA+GGG | 0.543212 | 6.1:-75399308 | None:intergenic |
| ACACGGATAGGTGCTGTTGA+AGG | 0.546664 | 6.1:-75405389 | None:intergenic |
| AGCTGAGGAGTTCCGTGTCA+AGG | 0.546667 | 6.1:+75399350 | MS.gene052451:CDS |
| AGGCTTGCCCTTTAGAGTCA+AGG | 0.549491 | 6.1:-75404267 | None:intergenic |
| CATGTTAGTTCTGGCTCCGA+AGG | 0.549605 | 6.1:+75399774 | MS.gene052451:CDS |
| GCCAAGAGCCCCAAGCGGAA+GGG | 0.551717 | 6.1:-75395251 | None:intergenic |
| AGTGGGCGCAGGAGCTGCAA+TGG | 0.552530 | 6.1:-75406212 | None:intergenic |
| ATTGTTCAATATGTTGGAGA+AGG | 0.552863 | 6.1:-75399518 | None:intergenic |
| CTGCTAAATTTGGAAGCTTG+CGG | 0.553281 | 6.1:-75399108 | None:intergenic |
| ATCATTATTTAAGAAGCTCA+CGG | 0.554036 | 6.1:-75396400 | None:intergenic |
| GATAAACCGGACATCATCAG+GGG | 0.554983 | 6.1:+75406309 | MS.gene052451:CDS |
| TGCTCCTCTAGCAGGTGGAA+AGG | 0.555846 | 6.1:-75401250 | None:intergenic |
| AAGGTTCGCCGATGTTGTAT+GGG | 0.556759 | 6.1:-75395227 | None:intergenic |
| GGATAAACCGGACATCATCA+GGG | 0.556890 | 6.1:+75406308 | MS.gene052451:CDS |
| CTGATAGAACATCAAAAGCA+TGG | 0.560392 | 6.1:-75396584 | None:intergenic |
| GCAACTGGAGCATGATCAGA+AGG | 0.561662 | 6.1:-75404287 | None:intergenic |
| AGCTCCTGCGCCCACTACAA+GGG | 0.562278 | 6.1:+75406219 | MS.gene052451:CDS |
| ATTGCAAGCTACTTAAACGA+AGG | 0.562326 | 6.1:+75401069 | MS.gene052451:CDS |
| CTACATCAACGGATGGCTGG+GGG | 0.562918 | 6.1:+75405456 | MS.gene052451:CDS |
| TTGCAAGCTACTTAAACGAA+GGG | 0.564838 | 6.1:+75401070 | MS.gene052451:CDS |
| CATAATTGCAGCTGTCTCAA+AGG | 0.565208 | 6.1:+75400672 | MS.gene052451:intron |
| ACATCTTCTAATGCCAGCTC+AGG | 0.570241 | 6.1:+75404338 | MS.gene052451:CDS |
| CTTCGGAGCCAGAACTAACA+TGG | 0.570780 | 6.1:-75399773 | None:intergenic |
| CCCTACATCTCCTACATCAA+CGG | 0.571117 | 6.1:+75405445 | MS.gene052451:CDS |
| CTAACATTCAAGCAGCTCAA+AGG | 0.572637 | 6.1:+75405576 | MS.gene052451:CDS |
| TAATTAAGAAGTCTCCTCCA+TGG | 0.572719 | 6.1:+75397087 | MS.gene052451:CDS |
| CTTCTTAATTACAGCCCAGT+CGG | 0.573033 | 6.1:-75397075 | None:intergenic |
| ATGTAGGAGATGTAGGGGCA+TGG | 0.573984 | 6.1:-75405439 | None:intergenic |
| AGGTCTTGATGTTGCTGGAG+CGG | 0.575945 | 6.1:-75406143 | None:intergenic |
| ATGTTAGTAAGAGCTGGAGT+TGG | 0.578383 | 6.1:-75405560 | None:intergenic |
| ATTAGAAGATGTTGGTGTAA+GGG | 0.578476 | 6.1:-75404327 | None:intergenic |
| TGTCTCAAAGGACCTTGTCT+GGG | 0.579463 | 6.1:+75400684 | MS.gene052451:CDS |
| CTGAAAATGACAAGGATGGG+TGG | 0.581469 | 6.1:+75405507 | MS.gene052451:CDS |
| TCATCATCGCGGTACCTCCA+AGG | 0.585096 | 6.1:+75395275 | MS.gene052451:CDS |
| AAGTCTGACCTTGGGAATGG+AGG | 0.585606 | 6.1:-75398004 | None:intergenic |
| AACCTGAAAATGACAAGGAT+GGG | 0.586228 | 6.1:+75405504 | MS.gene052451:CDS |
| ATTATCTGGAACCAATGCCC+AGG | 0.586298 | 6.1:+75395398 | MS.gene052451:CDS |
| CCCCAGCCATCCGTTGATGT+AGG | 0.587906 | 6.1:-75405455 | None:intergenic |
| GCGTGGAACTGAGTAGCCGC+TGG | 0.590412 | 6.1:-75398181 | None:intergenic |
| AACTAATGATGATGATCCAT+GGG | 0.594078 | 6.1:+75406186 | MS.gene052451:CDS |
| TCTGGAACCAATGCCCAGGA+TGG | 0.595289 | 6.1:+75395402 | MS.gene052451:CDS |
| TTTCCATTCAGCAATATGCA+TGG | 0.596821 | 6.1:+75397012 | MS.gene052451:intron |
| AATTAAGAAGTCTCCTCCAT+GGG | 0.608185 | 6.1:+75397088 | MS.gene052451:CDS |
| AGGGATGAATATTATGCTTG+GGG | 0.608296 | 6.1:+75396357 | MS.gene052451:intron |
| CCCCAAGAATCAATGGCCCA+TGG | 0.613929 | 6.1:-75397104 | None:intergenic |
| AATTCCACCAAGGTTGAGCA+GGG | 0.616045 | 6.1:+75406084 | MS.gene052451:CDS |
| AATTATTAGTTACCTTGACA+CGG | 0.618397 | 6.1:-75399362 | None:intergenic |
| GATACCTTTCCACCTGCTAG+AGG | 0.619442 | 6.1:+75401246 | MS.gene052451:CDS |
| AGCAGCTGAACCAAATTCAA+GGG | 0.620239 | 6.1:-75399283 | None:intergenic |
| AATTACCAGCATTTGCGTAG+AGG | 0.620808 | 6.1:-75396631 | None:intergenic |
| GAACCTGAAAATGACAAGGA+TGG | 0.621311 | 6.1:+75405503 | MS.gene052451:CDS |
| TATGTTGGAGAAGGCTGACA+CGG | 0.621891 | 6.1:-75399509 | None:intergenic |
| ATACCTGCTCCTCTAGCAGG+TGG | 0.623925 | 6.1:-75401255 | None:intergenic |
| GGTGTGGAATTTACACGGAT+AGG | 0.624750 | 6.1:-75405401 | None:intergenic |
| ACGGACAGCTCGATCATTGG+AGG | 0.625109 | 6.1:-75399490 | None:intergenic |
| ATTTAATCTACGAGAAGGCG+TGG | 0.626292 | 6.1:-75398198 | None:intergenic |
| CTCTGCTTCCAGATTACCAG+CGG | 0.627746 | 6.1:+75398165 | MS.gene052451:CDS |
| GAGAAACCAGTAGCAACATG+AGG | 0.635595 | 6.1:-75399712 | None:intergenic |
| GCTAGAGAATGGAATTGATG+AGG | 0.638647 | 6.1:+75405481 | MS.gene052451:CDS |
| TACATCAACGGATGGCTGGG+GGG | 0.641241 | 6.1:+75405457 | MS.gene052451:CDS |
| CAACAATGCAGTCAAAGCAG+GGG | 0.641805 | 6.1:-75399307 | None:intergenic |
| TTCTTTAACACAATCTGACG+AGG | 0.643601 | 6.1:-75399139 | None:intergenic |
| GGCTCTTGGCTTCATCATCG+CGG | 0.646469 | 6.1:+75395264 | MS.gene052451:CDS |
| TGAAAATGACAAGGATGGGT+GGG | 0.647528 | 6.1:+75405508 | MS.gene052451:CDS |
| TGCAACACAATACAAATCAA+CGG | 0.647901 | 6.1:+75397040 | MS.gene052451:CDS |
| ACATCTCCTACATCAACGGA+TGG | 0.648116 | 6.1:+75405449 | MS.gene052451:CDS |
| TAACACTGCCTCCATTCCCA+AGG | 0.650706 | 6.1:+75397996 | MS.gene052451:CDS |
| GGCAAAGCAACACTACGAGA+AGG | 0.650955 | 6.1:+75402173 | MS.gene052451:CDS |
| CGTTGATGTAGGAGATGTAG+GGG | 0.651141 | 6.1:-75405444 | None:intergenic |
| CTTTAATAATGACCCAGACA+AGG | 0.651418 | 6.1:-75400696 | None:intergenic |
| GAAAGGTATCACGTAAAGCA+CGG | 0.652734 | 6.1:-75401233 | None:intergenic |
| AATCTGGTGTGGAATTTACA+CGG | 0.654113 | 6.1:-75405406 | None:intergenic |
| AGAAACCAGTAGCAACATGA+GGG | 0.659703 | 6.1:-75399711 | None:intergenic |
| CCAGGATGGACATTTAGCTG+CGG | 0.659961 | 6.1:+75395416 | MS.gene052451:CDS |
| GTGGTCAGTGAAATCTGGTG+TGG | 0.662798 | 6.1:-75405417 | None:intergenic |
| CTCCAAAATTAGGTGCTCAG+CGG | 0.663729 | 6.1:+75406287 | MS.gene052451:CDS |
| GGAGCTAGCAAAATCCGACT+GGG | 0.664324 | 6.1:+75397061 | MS.gene052451:CDS |
| ACATTCAAGCAGCTCAAAGG+CGG | 0.669990 | 6.1:+75405579 | MS.gene052451:CDS |
| ACATCAATGAAATTGCCACT+CGG | 0.673599 | 6.1:+75401417 | MS.gene052451:CDS |
| TGCAAGCTACTTAAACGAAG+GGG | 0.676042 | 6.1:+75401071 | MS.gene052451:CDS |
| GAGCTGGCATTAGAAGATGT+TGG | 0.677571 | 6.1:-75404335 | None:intergenic |
| TAGGAGATGTAGGGGCATGG+TGG | 0.678043 | 6.1:-75405436 | None:intergenic |
| CGCGACCCAAAATTCCACCA+AGG | 0.678187 | 6.1:+75406074 | MS.gene052451:CDS |
| AGAGATCTCCCATACAACAT+CGG | 0.678627 | 6.1:+75395219 | MS.gene052451:CDS |
| TTTGAAGTTGAGCAAAACAG+AGG | 0.685379 | 6.1:+75397966 | MS.gene052451:CDS |
| TCAAAGCTTATAGAAAACAG+TGG | 0.696006 | 6.1:+75398224 | MS.gene052451:CDS |
| ATAAACCGGACATCATCAGG+GGG | 0.707637 | 6.1:+75406310 | MS.gene052451:CDS |
| TGTTGTATGGGAGATCTCTG+AGG | 0.714551 | 6.1:-75395215 | None:intergenic |
| ATGAAGCCAAGAGCCCCAAG+CGG | 0.722990 | 6.1:-75395256 | None:intergenic |
| AACATTAGGAAGAATCCGAG+TGG | 0.723039 | 6.1:-75401432 | None:intergenic |
| GATGTCATAGTTGGAACTGG+TGG | 0.723344 | 6.1:-75401399 | None:intergenic |
| TAGGTCTTGAAGGTACACAA+AGG | 0.723793 | 6.1:+75395839 | MS.gene052451:CDS |
| CAAGAATCAATGGCCCATGG+AGG | 0.724818 | 6.1:-75397101 | None:intergenic |
| TGAGGAACCTGAAAATGACA+AGG | 0.725485 | 6.1:+75405499 | MS.gene052451:CDS |
| AAATATGGCAGAGACTACTG+GGG | 0.748805 | 6.1:+75402862 | MS.gene052451:CDS |
| GATGAAGATGAAGATTTGTG+GGG | 0.753066 | 6.1:+75406106 | MS.gene052451:CDS |
| AATATGGCAGAGACTACTGG+GGG | 0.765761 | 6.1:+75402863 | MS.gene052451:CDS |
| TAAACCGGACATCATCAGGG+GGG | 0.787804 | 6.1:+75406311 | MS.gene052451:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 75395171 | 75406339 | 75395171 | ID=MS.gene052451 |
| chr6.1 | mRNA | 75395171 | 75406339 | 75395171 | ID=MS.gene052451.t1;Parent=MS.gene052451 |
| chr6.1 | exon | 75395171 | 75395296 | 75395171 | ID=MS.gene052451.t1.exon1;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75395171 | 75395296 | 75395171 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75395369 | 75395467 | 75395369 | ID=MS.gene052451.t1.exon2;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75395369 | 75395467 | 75395369 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75395709 | 75395860 | 75395709 | ID=MS.gene052451.t1.exon3;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75395709 | 75395860 | 75395709 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75396359 | 75396431 | 75396359 | ID=MS.gene052451.t1.exon4;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75396359 | 75396431 | 75396359 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75396525 | 75396647 | 75396525 | ID=MS.gene052451.t1.exon5;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75396525 | 75396647 | 75396525 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75397023 | 75397131 | 75397023 | ID=MS.gene052451.t1.exon6;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75397023 | 75397131 | 75397023 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75397938 | 75398017 | 75397938 | ID=MS.gene052451.t1.exon7;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75397938 | 75398017 | 75397938 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75398164 | 75398245 | 75398164 | ID=MS.gene052451.t1.exon8;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75398164 | 75398245 | 75398164 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75399023 | 75399162 | 75399023 | ID=MS.gene052451.t1.exon9;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75399023 | 75399162 | 75399023 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75399261 | 75399371 | 75399261 | ID=MS.gene052451.t1.exon10;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75399261 | 75399371 | 75399261 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75399462 | 75399578 | 75399462 | ID=MS.gene052451.t1.exon11;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75399462 | 75399578 | 75399462 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75399706 | 75399795 | 75399706 | ID=MS.gene052451.t1.exon12;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75399706 | 75399795 | 75399706 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75400683 | 75400736 | 75400683 | ID=MS.gene052451.t1.exon13;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75400683 | 75400736 | 75400683 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75401018 | 75401092 | 75401018 | ID=MS.gene052451.t1.exon14;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75401018 | 75401092 | 75401018 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75401198 | 75401273 | 75401198 | ID=MS.gene052451.t1.exon15;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75401198 | 75401273 | 75401198 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75401381 | 75401480 | 75401381 | ID=MS.gene052451.t1.exon16;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75401381 | 75401480 | 75401381 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75402125 | 75402194 | 75402125 | ID=MS.gene052451.t1.exon17;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75402125 | 75402194 | 75402125 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75402860 | 75402933 | 75402860 | ID=MS.gene052451.t1.exon18;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75402860 | 75402933 | 75402860 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75404253 | 75404359 | 75404253 | ID=MS.gene052451.t1.exon19;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75404253 | 75404359 | 75404253 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75405378 | 75405632 | 75405378 | ID=MS.gene052451.t1.exon20;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75405378 | 75405632 | 75405378 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| chr6.1 | exon | 75406065 | 75406339 | 75406065 | ID=MS.gene052451.t1.exon21;Parent=MS.gene052451.t1 |
| chr6.1 | CDS | 75406065 | 75406339 | 75406065 | ID=cds.MS.gene052451.t1;Parent=MS.gene052451.t1 |
| Gene Sequence |
| Protein sequence |
