AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052521

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052521.t1 MTR_4g089095 95.638 298 8 2 1 293 1 298 0.0 585
MS.gene052521.t1 MTR_4g089095 95.076 264 8 2 35 293 1 264 0.0 516
MS.gene052521.t1 MTR_2g013370 58.689 305 83 14 1 293 1 274 9.66e-97 286
MS.gene052521.t1 MTR_2g096740 41.989 181 82 6 50 227 62 222 4.70e-31 117
MS.gene052521.t1 MTR_2g096740 42.541 181 81 7 50 227 77 237 4.87e-31 118
MS.gene052521.t1 MTR_4g088580 54.472 123 45 3 17 132 16 134 1.76e-30 118
MS.gene052521.t1 MTR_3g091820 67.105 76 20 2 29 103 26 97 7.31e-29 112
MS.gene052521.t1 MTR_8g479350 59.259 81 32 1 48 127 66 146 1.01e-28 112
MS.gene052521.t1 MTR_8g079060 60.256 78 30 1 46 122 25 102 1.17e-28 110
MS.gene052521.t1 MTR_2g093220 31.923 260 144 10 36 269 25 277 1.60e-27 108
MS.gene052521.t1 MTR_8g027295 55.422 83 36 1 37 118 11 93 3.41e-27 107
MS.gene052521.t1 MTR_8g068210 63.768 69 24 1 43 110 25 93 9.04e-27 107
MS.gene052521.t1 MTR_3g090430 55.556 99 42 2 9 105 9 107 1.75e-26 106
MS.gene052521.t1 MTR_2g014170 85.714 49 7 0 50 98 45 93 2.33e-26 105
MS.gene052521.t1 MTR_7g059400 60.000 75 29 1 30 103 56 130 4.20e-26 105
MS.gene052521.t1 MTR_8g015840 74.545 55 14 0 46 100 16 70 5.51e-26 102
MS.gene052521.t1 MTR_1g056810 52.174 92 43 1 51 141 13 104 5.60e-26 104
MS.gene052521.t1 MTR_7g024670 80.357 56 9 1 52 105 79 134 6.74e-26 105
MS.gene052521.t1 MTR_4g063780 58.228 79 31 1 50 126 75 153 8.16e-26 104
MS.gene052521.t1 MTR_4g461080 78.947 57 11 1 46 101 25 81 8.63e-26 103
MS.gene052521.t1 MTR_4g022370 57.333 75 31 1 30 103 62 136 9.06e-26 105
MS.gene052521.t1 MTR_4g109980 61.333 75 29 0 48 122 38 112 3.49e-25 102
MS.gene052521.t1 MTR_1g077600 65.574 61 20 1 44 103 37 97 5.73e-25 101
MS.gene052521.t1 MTR_1g077600 60.606 66 25 1 39 103 32 97 5.84e-25 101
MS.gene052521.t1 MTR_2g059540 81.633 49 9 0 50 98 31 79 6.08e-25 99.4
MS.gene052521.t1 MTR_3g077750 48.624 109 45 4 1 98 1 109 5.88e-24 99.8
MS.gene052521.t1 MTR_5g031440 72.549 51 14 0 48 98 41 91 8.99e-24 99.4
MS.gene052521.t1 MTR_3g435480 58.462 65 27 0 39 103 125 189 2.94e-23 99.4
MS.gene052521.t1 MTR_2g014060 61.905 63 24 0 36 98 11 73 5.67e-23 97.1
MS.gene052521.t1 MTR_7g010950 50.000 92 39 2 52 136 137 228 9.04e-23 98.2
MS.gene052521.t1 MTR_2g016030 67.308 52 17 0 52 103 49 100 1.09e-22 92.4
MS.gene052521.t1 MTR_6g027450 42.241 116 51 2 7 121 61 161 1.12e-22 96.3
MS.gene052521.t1 MTR_4g082060 56.716 67 28 1 39 104 111 177 1.65e-22 97.1
MS.gene052521.t1 MTR_7g086780 41.379 116 64 2 10 121 56 171 1.94e-22 96.7
MS.gene052521.t1 MTR_6g027460 54.545 77 34 1 50 125 96 172 2.90e-22 95.5
MS.gene052521.t1 MTR_6g012450 66.667 54 18 0 50 103 136 189 2.98e-22 96.7
MS.gene052521.t1 MTR_5g041420 53.030 66 31 0 39 104 127 192 1.10e-21 93.2
MS.gene052521.t1 MTR_5g041400 40.708 113 64 2 38 148 105 216 1.69e-21 93.2
MS.gene052521.t1 MTR_5g041380 41.667 108 60 2 38 143 113 219 1.78e-21 93.2
MS.gene052521.t1 MTR_8g044220 65.455 55 18 1 50 103 118 172 1.91e-21 94.0
MS.gene052521.t1 MTR_5g041530 53.030 66 31 0 39 104 129 194 3.97e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052521.t1 AT1G28310 81.356 59 10 1 50 107 27 85 1.64e-29 114
MS.gene052521.t1 AT3G55370 41.081 185 90 6 50 227 76 248 2.11e-29 114
MS.gene052521.t1 AT1G28310 81.356 59 10 1 50 107 51 109 2.53e-29 114
MS.gene052521.t1 AT3G55370 41.081 185 90 6 50 227 76 248 2.71e-29 114
MS.gene052521.t1 AT3G55370 41.081 185 90 6 50 227 121 293 3.94e-29 114
MS.gene052521.t1 AT5G60850 69.863 73 21 1 50 121 51 123 1.90e-28 111
MS.gene052521.t1 AT1G51700 62.162 74 27 1 37 110 21 93 4.43e-28 107
MS.gene052521.t1 AT5G66940 52.577 97 44 2 23 119 6 100 6.29e-28 108
MS.gene052521.t1 AT5G65590 53.933 89 34 2 28 109 13 101 2.32e-27 108
MS.gene052521.t1 AT5G60200 80.000 55 10 1 50 103 55 109 4.54e-27 106
MS.gene052521.t1 AT3G50410 72.581 62 16 1 46 106 26 87 5.19e-27 106
MS.gene052521.t1 AT1G07640 47.368 114 44 2 8 105 21 134 5.57e-27 107
MS.gene052521.t1 AT1G07640 47.368 114 44 2 8 105 29 142 6.20e-27 107
MS.gene052521.t1 AT1G07640 60.811 74 27 1 34 105 5 78 9.53e-27 106
MS.gene052521.t1 AT3G21270 73.684 57 15 0 50 106 29 85 3.51e-26 102
MS.gene052521.t1 AT2G28510 75.862 58 13 1 47 103 45 102 4.44e-26 104
MS.gene052521.t1 AT3G61850 70.492 61 17 1 48 107 60 120 7.12e-26 103
MS.gene052521.t1 AT3G61850 70.492 61 17 1 48 107 60 120 7.12e-26 103
MS.gene052521.t1 AT3G61850 70.492 61 17 1 48 107 72 132 7.36e-26 104
MS.gene052521.t1 AT2G37590 57.534 73 30 1 34 105 73 145 9.86e-26 104
MS.gene052521.t1 AT3G61850 70.492 61 17 1 48 107 60 120 1.04e-25 103
MS.gene052521.t1 AT3G61850 70.492 61 17 1 48 107 72 132 1.23e-25 103
MS.gene052521.t1 AT3G45610 71.930 57 15 1 48 103 38 94 1.38e-25 102
MS.gene052521.t1 AT2G28810 31.599 269 145 6 36 280 63 316 2.19e-25 103
MS.gene052521.t1 AT2G28810 65.079 63 22 0 36 98 80 142 2.41e-25 103
MS.gene052521.t1 AT4G24060 62.121 66 24 1 39 103 42 107 4.03e-25 103
MS.gene052521.t1 AT5G02460 76.364 55 12 1 50 103 95 149 5.65e-25 103
MS.gene052521.t1 AT4G38000 71.698 53 15 0 50 102 41 93 1.91e-24 99.4
MS.gene052521.t1 AT5G62430 47.872 94 46 1 19 109 20 113 3.30e-24 99.8
MS.gene052521.t1 AT1G47655 73.077 52 14 0 47 98 26 77 7.16e-24 96.7
MS.gene052521.t1 AT3G52440 72.727 55 14 1 52 105 27 81 7.22e-24 97.8
MS.gene052521.t1 AT2G46590 76.000 50 12 0 48 97 66 115 8.30e-24 99.8
MS.gene052521.t1 AT2G46590 76.000 50 12 0 48 97 78 127 8.94e-24 99.8
MS.gene052521.t1 AT3G52440 72.727 55 14 1 52 105 46 100 1.03e-23 97.8
MS.gene052521.t1 AT4G21050 58.209 67 27 1 52 117 26 92 1.16e-23 96.3
MS.gene052521.t1 AT4G00940 67.213 61 19 1 48 107 66 126 1.16e-23 98.2
MS.gene052521.t1 AT4G00940 67.213 61 19 1 48 107 66 126 1.16e-23 98.2
MS.gene052521.t1 AT4G00940 67.213 61 19 1 48 107 66 126 1.16e-23 98.2
MS.gene052521.t1 AT1G21340 69.643 56 16 1 52 106 40 95 1.23e-23 97.4
MS.gene052521.t1 AT3G47500 70.370 54 16 0 50 103 110 163 2.94e-23 99.4
MS.gene052521.t1 AT1G69570 41.270 126 63 3 52 167 134 258 3.62e-23 98.6
MS.gene052521.t1 AT5G39660 58.462 65 27 0 39 103 127 191 5.06e-23 98.6
MS.gene052521.t1 AT5G39660 58.462 65 27 0 39 103 127 191 5.06e-23 98.6
MS.gene052521.t1 AT5G39660 58.462 65 27 0 39 103 127 191 5.06e-23 98.6
MS.gene052521.t1 AT1G64620 60.000 60 24 0 39 98 38 97 7.58e-23 97.1
MS.gene052521.t1 AT1G29160 67.308 52 17 0 52 103 64 115 1.55e-22 92.4
MS.gene052521.t1 AT2G34140 64.815 54 19 0 50 103 58 111 1.57e-22 92.0
MS.gene052521.t1 AT5G62940 78.723 47 10 0 52 98 75 121 1.85e-22 96.3
MS.gene052521.t1 AT1G26790 66.667 54 18 0 50 103 111 164 2.52e-22 95.9
MS.gene052521.t1 AT4G21040 61.667 60 21 1 52 109 27 86 1.41e-21 91.3
MS.gene052521.t1 AT4G21080 44.706 85 47 0 52 136 27 111 2.76e-21 90.9
MS.gene052521.t1 AT4G21030 60.870 46 18 0 52 97 23 68 5.87e-13 66.6

Find 58 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCAGTGCTTGGAATTAT+TGG 0.224649 4.3:+23473133 None:intergenic
TCTTCCAATGTTTATTACTA+TGG 0.226715 4.3:-23473181 MS.gene052521:CDS
CTGATCTAAAGAATCCTTAT+TGG 0.245243 4.3:-23473009 MS.gene052521:CDS
CTTATTAGAATCTCAAGATT+TGG 0.267364 4.3:-23473788 MS.gene052521:CDS
AAAGTTCAAAGTATTGGAAT+TGG 0.333779 4.3:-23473057 MS.gene052521:CDS
CAAATCTTGAGATTCTAATA+AGG 0.337572 4.3:+23473789 None:intergenic
TTGGGAAGACATTGATTCAT+TGG 0.357990 4.3:-23473038 MS.gene052521:CDS
GTTGGTAATGGTAATGTTAA+TGG 0.368454 4.3:-23473307 MS.gene052521:CDS
CTCATTAGATGATGAGGCTT+TGG 0.369809 4.3:+23473760 None:intergenic
TTATCAGAAAACAAAGGTTT+TGG 0.373479 4.3:-23473331 MS.gene052521:CDS
TGATCTAAAGAATCCTTATT+GGG 0.381365 4.3:-23473008 MS.gene052521:CDS
TTTCTAGCAGTGGACTTGAT+TGG 0.385715 4.3:-23473819 MS.gene052521:CDS
AATGGCATGTTTACTAGTAC+TGG 0.395485 4.3:-23473289 MS.gene052521:CDS
ATATCAGAATCATCCCAATA+AGG 0.403157 4.3:+23472995 None:intergenic
TTCTTTCTGCCACCACCAAC+AGG 0.404107 4.3:+23473565 None:intergenic
AAGTTCAAAGTATTGGAATT+GGG 0.421160 4.3:-23473056 MS.gene052521:CDS
AAAAGAGCTTGAGGTTGAAA+AGG 0.429717 4.3:+23473222 None:intergenic
AGTAGTAGTTATGGTGGTGG+TGG 0.454724 4.3:+23473504 None:intergenic
CATGGGTTTGAGTTCTAAGC+AGG 0.458863 4.3:-23473845 MS.gene052521:CDS
GCTATTCATATTTGTAATTG+AGG 0.463164 4.3:+23473471 None:intergenic
GGTGCAAGTAGTAGTAGTTA+TGG 0.473348 4.3:+23473495 None:intergenic
GCATGGAAAGTTCAAAGTAT+TGG 0.482582 4.3:-23473063 MS.gene052521:CDS
AGAGCTTGATATAGAGATGA+AGG 0.485026 4.3:+23473400 None:intergenic
CCACCACTTGTTGATGCTGC+TGG 0.497067 4.3:+23473085 None:intergenic
GTGTTTGTTGAATCACATCT+TGG 0.501929 4.3:+23473688 None:intergenic
GTGTTAGTGCAGCCAGTGCT+TGG 0.509724 4.3:+23473124 None:intergenic
CTACGCAATGTTCCTGTTGG+TGG 0.512399 4.3:-23473577 MS.gene052521:CDS
TGTAAAAGACACTGGACTAA+AGG 0.514243 4.3:-23473607 MS.gene052521:CDS
AAAGAGCTTGAGGTTGAAAA+GGG 0.516394 4.3:+23473223 None:intergenic
TTCTGTTGTAGAAGCAAAGA+TGG 0.517894 4.3:+23473367 None:intergenic
CGCAATGTTCCTGTTGGTGG+TGG 0.518071 4.3:-23473574 MS.gene052521:CDS
AAGCAGGTTATTTCTAGCAG+TGG 0.536340 4.3:-23473829 MS.gene052521:CDS
GATGCTGCTGGTATCTCCCA+TGG 0.542943 4.3:+23473097 None:intergenic
GAACCAATAATTCCAAGCAC+TGG 0.555313 4.3:-23473136 MS.gene052521:CDS
GGTTGAAAAGGGAAAGAGCA+TGG 0.558342 4.3:+23473234 None:intergenic
AGCATCAACAAGTGGTGGCA+TGG 0.561290 4.3:-23473080 MS.gene052521:CDS
CTCTCCATAGTAATAAACAT+TGG 0.562058 4.3:+23473177 None:intergenic
ATTCAAACACCTCTTCAAGT+TGG 0.568059 4.3:-23473439 MS.gene052521:CDS
GTGGTGGTGGAAGAAGTAAC+TGG 0.571697 4.3:+23473517 None:intergenic
AGTTGTGTCAAAAGAGCTTG+AGG 0.572542 4.3:+23473213 None:intergenic
GAAGAAGTAACTGGTGTGGT+TGG 0.574360 4.3:+23473526 None:intergenic
GTAGAGCTTGTAAAAGACAC+TGG 0.584007 4.3:-23473615 MS.gene052521:CDS
GCTGCACTAACACAAAGCCA+TGG 0.594454 4.3:-23473114 MS.gene052521:CDS
CAATGTTTATTACTATGGAG+AGG 0.597791 4.3:-23473176 MS.gene052521:CDS
AAAAGACACTGGACTAAAGG+TGG 0.598362 4.3:-23473604 MS.gene052521:CDS
ACTCTACGCAATGTTCCTGT+TGG 0.603022 4.3:-23473580 MS.gene052521:CDS
ATTCATATTTGTAATTGAGG+TGG 0.614882 4.3:+23473474 None:intergenic
CTGCACTAACACAAAGCCAT+GGG 0.628496 4.3:-23473113 MS.gene052521:CDS
AGTAGTAGTAGTTATGGTGG+TGG 0.635889 4.3:+23473501 None:intergenic
GTGGTGGCAGAAAGAATAAG+AGG 0.637344 4.3:-23473558 MS.gene052521:CDS
CCAGCAGCATCAACAAGTGG+TGG 0.642482 4.3:-23473085 MS.gene052521:CDS
GCAAGTAGTAGTAGTTATGG+TGG 0.645803 4.3:+23473498 None:intergenic
AATAACTTATCAGAAAACAA+AGG 0.648214 4.3:-23473337 MS.gene052521:CDS
TACAAATATGAATAGCAACA+TGG 0.667766 4.3:-23473464 MS.gene052521:CDS
CAAGCTCTACAGAAATGACG+AGG 0.668993 4.3:+23473628 None:intergenic
GGTGGAAGAAGTAACTGGTG+TGG 0.685888 4.3:+23473522 None:intergenic
ATACCAGCAGCATCAACAAG+TGG 0.686074 4.3:-23473088 MS.gene052521:CDS
TGTTGTAGAAGCAAAGATGG+TGG 0.693926 4.3:+23473370 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACTTATCAGAAAACAA+AGG - chr4.3:23473492-23473511 MS.gene052521:CDS 20.0%
! ATTCATATTTGTAATTGAGG+TGG + chr4.3:23473358-23473377 None:intergenic 25.0%
! CAAATCTTGAGATTCTAATA+AGG + chr4.3:23473043-23473062 None:intergenic 25.0%
! CTTATTAGAATCTCAAGATT+TGG - chr4.3:23473041-23473060 MS.gene052521:CDS 25.0%
! GCTATTCATATTTGTAATTG+AGG + chr4.3:23473361-23473380 None:intergenic 25.0%
! TACAAATATGAATAGCAACA+TGG - chr4.3:23473365-23473384 MS.gene052521:CDS 25.0%
! TCTTCCAATGTTTATTACTA+TGG - chr4.3:23473648-23473667 MS.gene052521:CDS 25.0%
! TGATCTAAAGAATCCTTATT+GGG - chr4.3:23473821-23473840 MS.gene052521:CDS 25.0%
!! TTATCAGAAAACAAAGGTTT+TGG - chr4.3:23473498-23473517 MS.gene052521:CDS 25.0%
!!! AAAGTTCAAAGTATTGGAAT+TGG - chr4.3:23473772-23473791 MS.gene052521:CDS 25.0%
!!! AAGTTCAAAGTATTGGAATT+GGG - chr4.3:23473773-23473792 MS.gene052521:CDS 25.0%
ATATCAGAATCATCCCAATA+AGG + chr4.3:23473837-23473856 None:intergenic 30.0%
CAATGTTTATTACTATGGAG+AGG - chr4.3:23473653-23473672 MS.gene052521:CDS 30.0%
CTCTCCATAGTAATAAACAT+TGG + chr4.3:23473655-23473674 None:intergenic 30.0%
CTGATCTAAAGAATCCTTAT+TGG - chr4.3:23473820-23473839 MS.gene052521:CDS 30.0%
! TGTTTTCTCATTAGATGATG+AGG + chr4.3:23473078-23473097 None:intergenic 30.0%
!! GTTGGTAATGGTAATGTTAA+TGG - chr4.3:23473522-23473541 MS.gene052521:CDS 30.0%
AAAAGAGCTTGAGGTTGAAA+AGG + chr4.3:23473610-23473629 None:intergenic 35.0%
AAAGAGCTTGAGGTTGAAAA+GGG + chr4.3:23473609-23473628 None:intergenic 35.0%
AATGGCATGTTTACTAGTAC+TGG - chr4.3:23473540-23473559 MS.gene052521:CDS 35.0%
AGAGCTTGATATAGAGATGA+AGG + chr4.3:23473432-23473451 None:intergenic 35.0%
ATTCAAACACCTCTTCAAGT+TGG - chr4.3:23473390-23473409 MS.gene052521:CDS 35.0%
GCATGGAAAGTTCAAAGTAT+TGG - chr4.3:23473766-23473785 MS.gene052521:CDS 35.0%
TGTAAAAGACACTGGACTAA+AGG - chr4.3:23473222-23473241 MS.gene052521:CDS 35.0%
TTCTGTTGTAGAAGCAAAGA+TGG + chr4.3:23473465-23473484 None:intergenic 35.0%
! GTGTTTGTTGAATCACATCT+TGG + chr4.3:23473144-23473163 None:intergenic 35.0%
! TTTTGATCACCAACTTGAAG+AGG + chr4.3:23473402-23473421 None:intergenic 35.0%
!! AGCATGGTTTGATTTTGATG+AGG + chr4.3:23473582-23473601 None:intergenic 35.0%
!! GAAAACAAAGGTTTTGGTGT+TGG - chr4.3:23473504-23473523 MS.gene052521:CDS 35.0%
!! TGGTTTGATTTTGATGAGGA+AGG + chr4.3:23473578-23473597 None:intergenic 35.0%
!! TTGGGAAGACATTGATTCAT+TGG - chr4.3:23473791-23473810 MS.gene052521:CDS 35.0%
!!! AAAGGTTTTGGTGTTGGTAA+TGG - chr4.3:23473510-23473529 MS.gene052521:CDS 35.0%
AAAAGACACTGGACTAAAGG+TGG - chr4.3:23473225-23473244 MS.gene052521:CDS 40.0%
AGTAGTAGTAGTTATGGTGG+TGG + chr4.3:23473331-23473350 None:intergenic 40.0%
AGTTGTGTCAAAAGAGCTTG+AGG + chr4.3:23473619-23473638 None:intergenic 40.0%
CTCATTAGATGATGAGGCTT+TGG + chr4.3:23473072-23473091 None:intergenic 40.0%
GAACCAATAATTCCAAGCAC+TGG - chr4.3:23473693-23473712 MS.gene052521:CDS 40.0%
GCAAGTAGTAGTAGTTATGG+TGG + chr4.3:23473334-23473353 None:intergenic 40.0%
GGTGCAAGTAGTAGTAGTTA+TGG + chr4.3:23473337-23473356 None:intergenic 40.0%
GTAGAGCTTGTAAAAGACAC+TGG - chr4.3:23473214-23473233 MS.gene052521:CDS 40.0%
TGTTGTAGAAGCAAAGATGG+TGG + chr4.3:23473462-23473481 None:intergenic 40.0%
! TTTCTAGCAGTGGACTTGAT+TGG - chr4.3:23473010-23473029 MS.gene052521:CDS 40.0%
!! AAGCAGGTTATTTCTAGCAG+TGG - chr4.3:23473000-23473019 MS.gene052521:CDS 40.0%
ACTCTACGCAATGTTCCTGT+TGG - chr4.3:23473249-23473268 MS.gene052521:CDS 45.0%
ATACCAGCAGCATCAACAAG+TGG - chr4.3:23473741-23473760 MS.gene052521:CDS 45.0%
CAAGCTCTACAGAAATGACG+AGG + chr4.3:23473204-23473223 None:intergenic 45.0%
CAGCCAGTGCTTGGAATTAT+TGG + chr4.3:23473699-23473718 None:intergenic 45.0%
CTGCACTAACACAAAGCCAT+GGG - chr4.3:23473716-23473735 MS.gene052521:CDS 45.0%
GAAGAAGTAACTGGTGTGGT+TGG + chr4.3:23473306-23473325 None:intergenic 45.0%
GGTTGAAAAGGGAAAGAGCA+TGG + chr4.3:23473598-23473617 None:intergenic 45.0%
GTGGTGGCAGAAAGAATAAG+AGG - chr4.3:23473271-23473290 MS.gene052521:CDS 45.0%
!! AGTAGTAGTTATGGTGGTGG+TGG + chr4.3:23473328-23473347 None:intergenic 45.0%
AGCATCAACAAGTGGTGGCA+TGG - chr4.3:23473749-23473768 MS.gene052521:CDS 50.0%
CTACGCAATGTTCCTGTTGG+TGG - chr4.3:23473252-23473271 MS.gene052521:CDS 50.0%
GCTGCACTAACACAAAGCCA+TGG - chr4.3:23473715-23473734 MS.gene052521:CDS 50.0%
GGTGGAAGAAGTAACTGGTG+TGG + chr4.3:23473310-23473329 None:intergenic 50.0%
TTCTTTCTGCCACCACCAAC+AGG + chr4.3:23473267-23473286 None:intergenic 50.0%
!! GTGGTGGTGGAAGAAGTAAC+TGG + chr4.3:23473315-23473334 None:intergenic 50.0%
CCAGCAGCATCAACAAGTGG+TGG - chr4.3:23473744-23473763 MS.gene052521:CDS 55.0%
GATGCTGCTGGTATCTCCCA+TGG + chr4.3:23473735-23473754 None:intergenic 55.0%
GTGTTAGTGCAGCCAGTGCT+TGG + chr4.3:23473708-23473727 None:intergenic 55.0%
! CCACCACTTGTTGATGCTGC+TGG + chr4.3:23473747-23473766 None:intergenic 55.0%
! CGCAATGTTCCTGTTGGTGG+TGG - chr4.3:23473255-23473274 MS.gene052521:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 23472985 23473866 23472985 ID=MS.gene052521
chr4.3 mRNA 23472985 23473866 23472985 ID=MS.gene052521.t1;Parent=MS.gene052521
chr4.3 exon 23472985 23473866 23472985 ID=MS.gene052521.t1.exon1;Parent=MS.gene052521.t1
chr4.3 CDS 23472985 23473866 23472985 ID=cds.MS.gene052521.t1;Parent=MS.gene052521.t1
Gene Sequence

>MS.gene052521

ATGGGTTTGAGTTCTAAGCAGGTTATTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTAGAATCTCAAGATTTGGAACTTCCAAAGCCTCATCATCTAATGAGAAAACAACAACAGCAACAAACTCAGCAACAAGCAGAACATTTGAATTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAACAATTACAATAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAAAGACACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGGCAGAAAGAATAAGAGGATCAAGAAACCAACCACACCAGTTACTTCTTCCACCACCACCATAACTACTACTACTTGCACCACCTCAATTACAAATATGAATAGCAACATGGCAATTCAAACACCTCTTCAAGTTGGTGATCAAAAAAGCATTCCTTCATCTCTATATCAAGCTCTAATTCATCCACCATCTTTGCTTCTACAACAGAATATGATGAATAACTTATCAGAAAACAAAGGTTTTGGTGTTGGTAATGGTAATGTTAATGGCATGTTTACTAGTACTGGTTCAACTTTGCACCTTCCTCATCAAAATCAAACCATGCTCTTTCCCTTTTCAACCTCAAGCTCTTTTGACACAACTACTTGTTCATCTTCCAATGTTTATTACTATGGAGAGGAGTTCAAAACAATAGAAGAACCAATAATTCCAAGCACTGGCTGCACTAACACAAAGCCATGGGAGATACCAGCAGCATCAACAAGTGGTGGCATGGAAAGTTCAAAGTATTGGAATTGGGAAGACATTGATTCATTGGTCTCAACTGATCTAAAGAATCCTTATTGGGATGATTCTGATATCAAACCTTGA
Protein sequence

>MS.gene052521.t1

MGLSSKQVISSSGLDWKQTLLESQDLELPKPHHLMRKQQQQQTQQQAEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRIKKPTTPVTSSTTTITTTTCTTSITNMNSNMAIQTPLQVGDQKSIPSSLYQALIHPPSLLLQQNMMNNLSENKGFGVGNGNVNGMFTSTGSTLHLPHQNQTMLFPFSTSSSFDTTTCSSSNVYYYGEEFKTIEEPIIPSTGCTNTKPWEIPAASTSGGMESSKYWNWEDIDSLVSTDLKNPYWDDSDIKP