AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052620.t1 MTR_3g075270 91.531 307 26 0 48 354 1 307 0.0 572
MS.gene052620.t1 MTR_4g104140 51.515 330 149 4 9 328 7 335 1.25e-120 352
MS.gene052620.t1 MTR_4g104140 56.471 255 108 2 77 328 11 265 5.70e-102 302
MS.gene052620.t1 MTR_5g015680 37.458 299 179 3 17 308 66 363 4.28e-69 221
MS.gene052620.t1 MTR_5g015680 37.458 299 179 3 17 308 105 402 1.93e-68 221
MS.gene052620.t1 MTR_5g015680 38.806 268 161 2 44 308 1 268 3.16e-65 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052620.t1 AT3G48360 47.541 305 139 4 31 314 46 350 5.57e-90 275
MS.gene052620.t1 AT5G63160 47.130 331 154 6 26 338 32 359 1.94e-88 270
MS.gene052620.t1 AT3G48360 48.339 271 120 3 31 281 46 316 1.15e-80 249
MS.gene052620.t1 AT5G63160 48.352 273 124 4 26 281 32 304 4.81e-80 247
MS.gene052620.t1 AT3G48360 50.820 244 109 3 82 314 1 244 2.94e-76 236
MS.gene052620.t1 AT5G63160 50.000 270 123 5 78 338 8 274 3.96e-75 233
MS.gene052620.t1 AT1G05690 38.284 303 175 6 31 325 66 364 2.50e-63 206
MS.gene052620.t1 AT5G67480 37.209 301 178 6 17 308 59 357 1.22e-61 202
MS.gene052620.t1 AT5G67480 37.209 301 178 6 17 308 59 357 1.22e-61 202
MS.gene052620.t1 AT5G67480 37.209 301 178 6 17 308 70 368 1.31e-61 202
MS.gene052620.t1 AT4G37610 37.248 298 175 7 20 308 57 351 4.99e-61 200

Find 89 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCGCTTCAAAATTAT+TGG 0.124222 3.1:+62122277 None:intergenic
CTCCACATGTCAAGCTTTGC+AGG 0.259755 3.1:-62121934 MS.gene052620:CDS
ATGGATATAAATGTAAGTTT+TGG 0.269976 3.1:+62122964 None:intergenic
AATGCACCTTTGCTTTAGTT+TGG 0.301923 3.1:+62122406 None:intergenic
CATGCAAGGTTCCTCTTTGC+AGG 0.308788 3.1:-62121797 MS.gene052620:intron
TACATTTCATCTACACTTCC+AGG 0.332926 3.1:-62122705 MS.gene052620:intron
ACACACTTTAAGTAGAGATT+TGG 0.333717 3.1:+62122311 None:intergenic
CATTCCCCGTGGTCATGAAT+TGG 0.355331 3.1:+62122372 None:intergenic
ATCATATGATGTGGAGATTA+CGG 0.355897 3.1:-62121976 MS.gene052620:CDS
TCCAGTGCACGCAACCGTTC+TGG 0.358145 3.1:-62122918 MS.gene052620:intron
GTACTATGCCACTAGGAGTA+TGG 0.365395 3.1:+62122945 None:intergenic
AAGTGAAGCTGTACAATGTT+TGG 0.366740 3.1:-62122033 MS.gene052620:CDS
ATGCACCTTTGCTTTAGTTT+GGG 0.372763 3.1:+62122407 None:intergenic
ACCAGAACGGTTGCGTGCAC+TGG 0.385474 3.1:+62122917 None:intergenic
AACACTTTACCACATGTAAT+AGG 0.401202 3.1:-62121902 MS.gene052620:CDS
AGTCAAGAGAGTCTTCTAAT+TGG 0.402862 3.1:-62121014 MS.gene052620:CDS
TCATATGATGTGGAGATTAC+GGG 0.403872 3.1:-62121975 MS.gene052620:CDS
TGGGACTATGCAGGTGCAGC+AGG 0.411993 3.1:-62122487 MS.gene052620:intron
CCTTGTCCTTAGCAATTGTA+AGG 0.421710 3.1:+62121083 None:intergenic
CAAGGAGAGATGAGGTAATT+CGG 0.427024 3.1:-62121065 MS.gene052620:CDS
GTCCCCAGTTCTAAAAGAAA+TGG 0.455888 3.1:-62122788 MS.gene052620:CDS
GAGGAACCTTGCATGCATCT+TGG 0.458524 3.1:+62121805 None:intergenic
GAAGAGAGGAAATAAACATA+GGG 0.473780 3.1:-62122081 MS.gene052620:CDS
AGAAGAGAGGAAATAAACAT+AGG 0.475467 3.1:-62122082 MS.gene052620:CDS
AACGGTTGCGTGCACTGGAA+AGG 0.491203 3.1:+62122922 None:intergenic
GAATACTAGAGTAGAGGAAG+AGG 0.495047 3.1:-62121043 MS.gene052620:CDS
CAAGAGAGTCTTCTAATTGG+TGG 0.514114 3.1:-62121011 MS.gene052620:CDS
ACGGTTGCGTGCACTGGAAA+GGG 0.514421 3.1:+62122923 None:intergenic
AACGGTAACGTTAAAATATG+TGG 0.514946 3.1:-62122757 MS.gene052620:CDS
AAGGCGATGGCTGCATTGGT+TGG 0.517717 3.1:+62122730 None:intergenic
TCCACATGTCAAGCTTTGCA+GGG 0.524594 3.1:-62121933 MS.gene052620:CDS
TTGATCCAATTCATGACCAC+GGG 0.542240 3.1:-62122377 MS.gene052620:CDS
TATTGCATAAACATGACCCT+TGG 0.542900 3.1:-62122235 MS.gene052620:CDS
TACGAGGTGGAAACAAATAG+TGG 0.546964 3.1:-62121136 MS.gene052620:CDS
TACAAAGGCGATGGCTGCAT+TGG 0.548314 3.1:+62122726 None:intergenic
CCTTACAATTGCTAAGGACA+AGG 0.552243 3.1:-62121083 MS.gene052620:CDS
TCTCAACAAAGAACGAGAAT+CGG 0.559033 3.1:-62122192 MS.gene052620:intron
ATTCTCGTTCTTTGTTGAGA+CGG 0.562147 3.1:+62122195 None:intergenic
TGTCTTCCTTACAATTGCTA+AGG 0.563853 3.1:-62121089 MS.gene052620:CDS
CCACATGTCAAGCTTTGCAG+GGG 0.564441 3.1:-62121932 MS.gene052620:CDS
GATAGCTGAGAAAGAGAACA+AGG 0.575893 3.1:-62121166 MS.gene052620:CDS
ATGATGTCAACTTCGAGCCA+AGG 0.576653 3.1:+62122218 None:intergenic
ATTCATGACCACGGGGAATG+TGG 0.583872 3.1:-62122369 MS.gene052620:CDS
TTGGAGCATATATGTACAGA+AGG 0.585859 3.1:-62122014 MS.gene052620:CDS
TGTAATAGGAGACTCGAGAG+AGG 0.587137 3.1:-62121888 MS.gene052620:CDS
TGATGTCAACTTCGAGCCAA+GGG 0.587603 3.1:+62122219 None:intergenic
AAAGAAATGGTAACGTCCAA+CGG 0.587929 3.1:-62122775 MS.gene052620:CDS
TGTGGTGGACGTGTTGCACT+TGG 0.589909 3.1:-62122351 MS.gene052620:CDS
ACGAGGTGGAAACAAATAGT+GGG 0.591901 3.1:-62121135 MS.gene052620:CDS
CCCCTGCAAAGCTTGACATG+TGG 0.598401 3.1:+62121932 None:intergenic
TGTTTCGCATACCTGCAAAG+AGG 0.600432 3.1:+62121786 None:intergenic
CAATGCCCAAACTAAAGCAA+AGG 0.601233 3.1:-62122412 MS.gene052620:CDS
TTGTAAGGAAGACATGGCTA+TGG 0.601532 3.1:+62121098 None:intergenic
GAAGCGGTGAAGGAAACAGA+GGG 0.603513 3.1:-62122266 MS.gene052620:CDS
GCTGAGAAAGAGAACAAGGA+AGG 0.604375 3.1:-62121162 MS.gene052620:CDS
CAACGTGGCATCATATGATG+TGG 0.607548 3.1:-62121985 MS.gene052620:CDS
AATTCGGAATACTAGAGTAG+AGG 0.608608 3.1:-62121049 MS.gene052620:CDS
CTCGAGTCTCCTATTACATG+TGG 0.612075 3.1:+62121893 None:intergenic
GGAGAAAACAGAGAAGCCAT+TGG 0.615463 3.1:+62123013 None:intergenic
GGAGACTCGAGAGAGGGTGT+AGG 0.617740 3.1:-62121881 MS.gene052620:CDS
GAGAGGAAATAAACATAGGG+AGG 0.621519 3.1:-62122078 MS.gene052620:CDS
GGAAAGGGTACTATGCCACT+AGG 0.629547 3.1:+62122938 None:intergenic
CTTGATCCAATTCATGACCA+CGG 0.630679 3.1:-62122378 MS.gene052620:CDS
ATTTATATCCATACTCCTAG+TGG 0.630760 3.1:-62122953 MS.gene052620:CDS
CATATGATGTGGAGATTACG+GGG 0.632166 3.1:-62121974 MS.gene052620:CDS
CATGACCACGGGGAATGTGG+TGG 0.632280 3.1:-62122366 MS.gene052620:CDS
TAGCAATTGTAAGGAAGACA+TGG 0.634002 3.1:+62121092 None:intergenic
GTAGGTGTTGTAAGTCTATG+TGG 0.636359 3.1:-62121863 MS.gene052620:CDS
GTGAAACAGAGGAAGAAGAG+AGG 0.641073 3.1:-62122095 MS.gene052620:intron
CGGTGAAGGAAACAGAGGGG+TGG 0.647649 3.1:-62122262 MS.gene052620:CDS
AGTGTAGATGAAATGTACAA+AGG 0.647924 3.1:+62122711 None:intergenic
GCTAAGGACAAGGAGAGATG+AGG 0.655281 3.1:-62121073 MS.gene052620:CDS
AAAATAGAAGAGTACCAGAA+CGG 0.658371 3.1:+62122904 None:intergenic
GGGACTATGCAGGTGCAGCA+GGG 0.659269 3.1:-62122486 MS.gene052620:intron
ACAAGGAAGGTGATACGAGG+TGG 0.662953 3.1:-62121149 MS.gene052620:CDS
CATGTGGAGAATTTAGTACA+CGG 0.664071 3.1:+62121948 None:intergenic
CACATCATATGATGCCACGT+TGG 0.666948 3.1:+62121986 None:intergenic
GATGAAATGTACAAAGGCGA+TGG 0.667885 3.1:+62122717 None:intergenic
GTAATAGGAGACTCGAGAGA+GGG 0.668774 3.1:-62121887 MS.gene052620:CDS
TGAAGCGGTGAAGGAAACAG+AGG 0.678822 3.1:-62122267 MS.gene052620:CDS
TACAGAAGGTTGCACCAACG+TGG 0.692512 3.1:-62122000 MS.gene052620:CDS
CGAGGTGGAAACAAATAGTG+GGG 0.698764 3.1:-62121134 MS.gene052620:CDS
CACGTCCACCACATTCCCCG+TGG 0.707824 3.1:+62122361 None:intergenic
AGACGTGCGAGAGTACGAGA+AGG 0.721408 3.1:+62122438 None:intergenic
ACTATGCAGGTGCAGCAGGG+AGG 0.723689 3.1:-62122483 MS.gene052620:intron
AGAACAAGGAAGGTGATACG+AGG 0.743284 3.1:-62121152 MS.gene052620:CDS
ATGATGTGGAGATTACGGGG+AGG 0.765492 3.1:-62121971 MS.gene052620:CDS
AAGCGGTGAAGGAAACAGAG+GGG 0.769201 3.1:-62122265 MS.gene052620:CDS
TGATCCAATTCATGACCACG+GGG 0.774666 3.1:-62122376 MS.gene052620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTTCTTTAATAAGT+TGG - chr3.1:62121863-62121882 MS.gene052620:CDS 10.0%
!!! AATTGAATTAACAAATTTTT+TGG - chr3.1:62121354-62121373 MS.gene052620:intron 10.0%
!!! CATTTTTTCATATAAAAAAA+AGG - chr3.1:62122253-62122272 MS.gene052620:CDS 10.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3.1:62122358-62122377 MS.gene052620:CDS 15.0%
!! ATATAGTGATTGAAAATGAA+CGG + chr3.1:62121121-62121140 None:intergenic 20.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3.1:62122776-62122795 MS.gene052620:CDS 20.0%
!!! ATGGATATAAATGTAAGTTT+TGG + chr3.1:62121027-62121046 None:intergenic 20.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3.1:62122748-62122767 MS.gene052620:CDS 20.0%
!!! TGGATATAAATGTAAGTTTT+GGG + chr3.1:62121026-62121045 None:intergenic 20.0%
! AAACAAATAATAACTACAGC+TGG - chr3.1:62122278-62122297 MS.gene052620:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3.1:62122456-62122475 MS.gene052620:CDS 25.0%
!! GGATATAAATGTAAGTTTTG+GGG + chr3.1:62121025-62121044 None:intergenic 25.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3.1:62121375-62121394 MS.gene052620:intron 25.0%
!!! AGTTACCAATAATTTTGAAG+CGG - chr3.1:62121706-62121725 MS.gene052620:intron 25.0%
!!! CTTTGAAATTAACCATCAAT+GGG - chr3.1:62122527-62122546 MS.gene052620:intron 25.0%
!!! GATATAAATGTAAGTTTTGG+GGG + chr3.1:62121024-62121043 None:intergenic 25.0%
!!! GTAGTTACTAGTTTTCATTT+AGG - chr3.1:62122747-62122766 MS.gene052620:CDS 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3.1:62122755-62122774 MS.gene052620:CDS 25.0%
!!! TTACCATTTCTTTTAGAACT+GGG + chr3.1:62121206-62121225 None:intergenic 25.0%
!!! TTCTTTAATAAGTTGGTGAT+CGG - chr3.1:62121870-62121889 MS.gene052620:CDS 25.0%
AACACTTTACCACATGTAAT+AGG - chr3.1:62122086-62122105 MS.gene052620:CDS 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3.1:62121231-62121250 MS.gene052620:intron 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3.1:62122446-62122465 MS.gene052620:CDS 30.0%
ACACACTTTAAGTAGAGATT+TGG + chr3.1:62121680-62121699 None:intergenic 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3.1:62121906-62121925 MS.gene052620:CDS 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3.1:62121521-62121540 MS.gene052620:intron 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3.1:62121280-62121299 None:intergenic 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3.1:62121490-62121509 None:intergenic 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3.1:62122012-62122031 MS.gene052620:CDS 30.0%
ATTTATATCCATACTCCTAG+TGG - chr3.1:62121035-62121054 MS.gene052620:CDS 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3.1:62121461-62121480 MS.gene052620:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3.1:62121907-62121926 MS.gene052620:CDS 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3.1:62122700-62122719 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3.1:62121304-62121323 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3.1:62122788-62122807 MS.gene052620:CDS 30.0%
TTGTATGATATACCCATTGA+TGG + chr3.1:62122542-62122561 None:intergenic 30.0%
! CAAATGCAATTGCATGTTTT+CGG - chr3.1:62123001-62123020 MS.gene052620:CDS 30.0%
! CCATTGATGGTTAATTTCAA+AGG + chr3.1:62122529-62122548 None:intergenic 30.0%
!! AAAATAGAAGAGTACCAGAA+CGG + chr3.1:62121087-62121106 None:intergenic 30.0%
!! CCTTTGAAATTAACCATCAA+TGG - chr3.1:62122526-62122545 MS.gene052620:intron 30.0%
!! CGTTCTAAAATTGATCTCAA+AGG - chr3.1:62121170-62121189 MS.gene052620:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3.1:62122590-62122609 MS.gene052620:intron 30.0%
!! TCTTTAATAAGTTGGTGATC+GGG - chr3.1:62121871-62121890 MS.gene052620:CDS 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3.1:62122589-62122608 MS.gene052620:intron 30.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3.1:62121232-62121251 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3.1:62121463-62121482 None:intergenic 30.0%
!!! GTTACCATTTCTTTTAGAAC+TGG + chr3.1:62121207-62121226 None:intergenic 30.0%
!!! TACCATTTCTTTTAGAACTG+GGG + chr3.1:62121205-62121224 None:intergenic 30.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3.1:62121955-62121974 MS.gene052620:CDS 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3.1:62121585-62121604 None:intergenic 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3.1:62122939-62122958 MS.gene052620:CDS 35.0%
ACAAAGTGACAAAACCAACA+CGG - chr3.1:62122616-62122635 MS.gene052620:intron 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3.1:62122974-62122993 MS.gene052620:CDS 35.0%
ATAATGTATACGTACCGTGT+TGG + chr3.1:62122633-62122652 None:intergenic 35.0%
ATTCTCGTTCTTTGTTGAGA+CGG + chr3.1:62121796-62121815 None:intergenic 35.0%
CACGGTACGTATACATTATA+TGG - chr3.1:62122634-62122653 MS.gene052620:intron 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3.1:62121491-62121510 None:intergenic 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3.1:62122043-62122062 None:intergenic 35.0%
CTTCACCGCTTCAAAATTAT+TGG + chr3.1:62121714-62121733 None:intergenic 35.0%
TACATTTCATCTACACTTCC+AGG - chr3.1:62121283-62121302 MS.gene052620:intron 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3.1:62122899-62122918 None:intergenic 35.0%
TATTGCATAAACATGACCCT+TGG - chr3.1:62121753-62121772 MS.gene052620:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3.1:62122013-62122032 MS.gene052620:CDS 35.0%
TCTCAACAAAGAACGAGAAT+CGG - chr3.1:62121796-62121815 MS.gene052620:intron 35.0%
TGTCTTCCTTACAATTGCTA+AGG - chr3.1:62122899-62122918 MS.gene052620:intron 35.0%
TTGGAGCATATATGTACAGA+AGG - chr3.1:62121974-62121993 MS.gene052620:CDS 35.0%
! AAAGAAATGGTAACGTCCAA+CGG - chr3.1:62121213-62121232 MS.gene052620:intron 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3.1:62121584-62121603 None:intergenic 35.0%
! TTTTAACCAAGATGCATGCA+AGG - chr3.1:62122177-62122196 MS.gene052620:intron 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3.1:62121454-62121473 None:intergenic 35.0%
!!! CAATAATTTTGAAGCGGTGA+AGG - chr3.1:62121712-62121731 MS.gene052620:intron 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3.1:62121455-62121474 None:intergenic 35.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3.1:62122853-62122872 MS.gene052620:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3.1:62121492-62121511 MS.gene052620:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3.1:62122977-62122996 MS.gene052620:CDS 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3.1:62122923-62122942 MS.gene052620:CDS 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3.1:62121576-62121595 MS.gene052620:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3.1:62122014-62122033 MS.gene052620:CDS 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3.1:62122569-62122588 MS.gene052620:intron 40.0%
CCTTACAATTGCTAAGGACA+AGG - chr3.1:62122905-62122924 MS.gene052620:intron 40.0%
CCTTGTCCTTAGCAATTGTA+AGG + chr3.1:62122908-62122927 None:intergenic 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3.1:62121610-62121629 MS.gene052620:intron 40.0%
GAAAATGAACGGAGACATGA+AGG + chr3.1:62121110-62121129 None:intergenic 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3.1:62122945-62122964 MS.gene052620:CDS 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3.1:62121910-62121929 MS.gene052620:CDS 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3.1:62122822-62122841 MS.gene052620:intron 40.0%
GATGAAATGTACAAAGGCGA+TGG + chr3.1:62121274-62121293 None:intergenic 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3.1:62121482-62121501 MS.gene052620:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3.1:62122852-62122871 MS.gene052620:intron 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3.1:62121481-62121500 MS.gene052620:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3.1:62121611-62121630 MS.gene052620:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3.1:62122893-62122912 None:intergenic 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3.1:62122125-62122144 MS.gene052620:intron 40.0%
!! GTCCCCAGTTCTAAAAGAAA+TGG - chr3.1:62121200-62121219 MS.gene052620:intron 40.0%
!!! TGTAAGTTTTGGGGGAAAAG+CGG + chr3.1:62121016-62121035 None:intergenic 40.0%
AGAACAAGGAAGGTGATACG+AGG - chr3.1:62122836-62122855 MS.gene052620:intron 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3.1:62121773-62121792 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3.1:62122003-62122022 MS.gene052620:CDS 45.0%
CACATCATATGATGCCACGT+TGG + chr3.1:62122005-62122024 None:intergenic 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3.1:62122854-62122873 MS.gene052620:intron 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3.1:62122098-62122117 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3.1:62122826-62122845 MS.gene052620:intron 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3.1:62122101-62122120 MS.gene052620:intron 45.0%
GTACTATGCCACTAGGAGTA+TGG + chr3.1:62121046-62121065 None:intergenic 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3.1:62121893-62121912 MS.gene052620:CDS 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3.1:62122055-62122074 MS.gene052620:CDS 45.0%
TGATCCAATTCATGACCACG+GGG - chr3.1:62121612-62121631 MS.gene052620:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3.1:62121772-62121791 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3.1:62122100-62122119 MS.gene052620:intron 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3.1:62122205-62122224 None:intergenic 45.0%
!!! GTAAGTTTTGGGGGAAAAGC+GGG + chr3.1:62121015-62121034 None:intergenic 45.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3.1:62121723-62121742 MS.gene052620:intron 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3.1:62122839-62122858 MS.gene052620:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3.1:62122017-62122036 MS.gene052620:CDS 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3.1:62121619-62121638 MS.gene052620:intron 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3.1:62122191-62122210 MS.gene052620:intron 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3.1:62121619-62121638 None:intergenic 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3.1:62122056-62122075 MS.gene052620:CDS 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3.1:62122054-62122073 MS.gene052620:CDS 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3.1:62121722-62121741 MS.gene052620:intron 50.0%
GAGGAACCTTGCATGCATCT+TGG + chr3.1:62122186-62122205 None:intergenic 50.0%
GCTAAGGACAAGGAGAGATG+AGG - chr3.1:62122915-62122934 MS.gene052620:intron 50.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3.1:62121265-62121284 None:intergenic 50.0%
TACAGAAGGTTGCACCAACG+TGG - chr3.1:62121988-62122007 MS.gene052620:CDS 50.0%
TGAAGCGGTGAAGGAAACAG+AGG - chr3.1:62121721-62121740 MS.gene052620:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3.1:62121882-62121901 MS.gene052620:CDS 50.0%
!! GGAAAGGGTACTATGCCACT+AGG + chr3.1:62121053-62121072 None:intergenic 50.0%
AACGGTTGCGTGCACTGGAA+AGG + chr3.1:62121069-62121088 None:intergenic 55.0%
ACGGTTGCGTGCACTGGAAA+GGG + chr3.1:62121068-62121087 None:intergenic 55.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3.1:62122059-62122078 None:intergenic 55.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3.1:62121261-62121280 None:intergenic 55.0%
! AGACGTGCGAGAGTACGAGA+AGG + chr3.1:62121553-62121572 None:intergenic 55.0%
!! TGTGGTGGACGTGTTGCACT+TGG - chr3.1:62121637-62121656 MS.gene052620:intron 55.0%
!! TTTTGGGGGAAAAGCGGGTG+GGG + chr3.1:62121010-62121029 None:intergenic 55.0%
!!! AGTTTTGGGGGAAAAGCGGG+TGG + chr3.1:62121012-62121031 None:intergenic 55.0%
!!! GTTTTGGGGGAAAAGCGGGT+GGG + chr3.1:62121011-62121030 None:intergenic 55.0%
AAAGCGGGTGGGGGAGACAA+TGG + chr3.1:62121000-62121019 None:intergenic 60.0%
AAGCGGGTGGGGGAGACAAT+GGG + chr3.1:62120999-62121018 None:intergenic 60.0%
ACCAGAACGGTTGCGTGCAC+TGG + chr3.1:62121074-62121093 None:intergenic 60.0%
ACTATGCAGGTGCAGCAGGG+AGG - chr3.1:62121505-62121524 MS.gene052620:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3.1:62121622-62121641 MS.gene052620:intron 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3.1:62121726-62121745 MS.gene052620:intron 60.0%
GGGACTATGCAGGTGCAGCA+GGG - chr3.1:62121502-62121521 MS.gene052620:intron 60.0%
TCCAGTGCACGCAACCGTTC+TGG - chr3.1:62121070-62121089 MS.gene052620:CDS 60.0%
TGGGACTATGCAGGTGCAGC+AGG - chr3.1:62121501-62121520 MS.gene052620:intron 60.0%
TTTGGGGGAAAAGCGGGTGG+GGG + chr3.1:62121009-62121028 None:intergenic 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3.1:62122107-62122126 MS.gene052620:intron 60.0%
CACGTCCACCACATTCCCCG+TGG + chr3.1:62121630-62121649 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 62120978 62123032 62120978 ID=MS.gene052620
chr3.1 mRNA 62120978 62123032 62120978 ID=MS.gene052620.t1;Parent=MS.gene052620
chr3.1 exon 62122919 62123032 62122919 ID=MS.gene052620.t1.exon1;Parent=MS.gene052620.t1
chr3.1 CDS 62122919 62123032 62122919 ID=cds.MS.gene052620.t1;Parent=MS.gene052620.t1
chr3.1 exon 62122706 62122818 62122706 ID=MS.gene052620.t1.exon2;Parent=MS.gene052620.t1
chr3.1 CDS 62122706 62122818 62122706 ID=cds.MS.gene052620.t1;Parent=MS.gene052620.t1
chr3.1 exon 62122193 62122496 62122193 ID=MS.gene052620.t1.exon3;Parent=MS.gene052620.t1
chr3.1 CDS 62122193 62122496 62122193 ID=cds.MS.gene052620.t1;Parent=MS.gene052620.t1
chr3.1 exon 62121798 62122108 62121798 ID=MS.gene052620.t1.exon4;Parent=MS.gene052620.t1
chr3.1 CDS 62121798 62122108 62121798 ID=cds.MS.gene052620.t1;Parent=MS.gene052620.t1
chr3.1 exon 62120978 62121200 62120978 ID=MS.gene052620.t1.exon5;Parent=MS.gene052620.t1
chr3.1 CDS 62120978 62121200 62120978 ID=cds.MS.gene052620.t1;Parent=MS.gene052620.t1
Gene Sequence

>MS.gene052620

ATGGCTTCTCTGTTTTCTCCCATTGTCTCCCCCACCCGCTTTTCCCCCAAAACTTACATTTATATCCATACTCCTAGTGGCATAGTACCCTTTCCAGTGCACGCAACCGTTCTGGTACTCTTCTATTTTCCTTCATGTCTCCGTTCATTTTCAATCACTATATTTTTTTATCGTCAATTAATTATGATTTTTCGTTCTAAAATTGATCTCAAAGGTTTCAGCGTCCCCAGTTCTAAAAGAAATGGTAACGTCCAACGGTAACGTTAAAATATGTGGTGTTCCAACCAATGCAGCCATCGCCTTTGTACATTTCATCTACACTTCCAGGTCAGTAATAGTGAAATTAAATAACTACTCATTTTTACGTAGAAAAGAAAATTGAATTAACAAATTTTTTGGTCTAAATACATCAATTTTCGGTTACTCAATTTTCTGTCATATTTAGAACAAAGAGAGTAGTATTATACTTTTTTCCCACTCATCCACTTGACAAAAAAAGACAATGGTGACCCTAAGAATTGATTGGGACTATGCAGGTGCAGCAGGGAGGATATGAAAAATTATGGAATACACCTTCTCGTACTCTCGCACGTCTTTGCAATGCCCAAACTAAAGCAAAGGTGCATTGTTGACTTGATCCAATTCATGACCACGGGGAATGTGGTGGACGTGTTGCACTTGGCTAAGCTTTGTGATGCACCAAATCTCTACTTAAAGTGTGTCAAGTTAGTTACCAATAATTTTGAAGCGGTGAAGGAAACAGAGGGGTGGAAATTATTGCATAAACATGACCCTTGGCTCGAAGTTGACATCATCCGTCTCAACAAAGAACGAGAATCGGTAAATAATAATCATTTTATTAAAATTCAGTAATTATATTTTATTTATATATTTCTTTAATAAGTTGGTGATCGGGTGAAACAGAGGAAGAAGAGAGGAAATAAACATAGGGAGGAACAAAAGTTGTTTGTGCAATTAAGTGAAGCTGTACAATGTTTGGAGCATATATGTACAGAAGGTTGCACCAACGTGGCATCATATGATGTGGAGATTACGGGGAGGCCGTGTACTAAATTCTCCACATGTCAAGCTTTGCAGGGGTTGATCAAACACTTTACCACATGTAATAGGAGACTCGAGAGAGGGTGTAGGTGTTGTAAGTCTATGTGGCAACTACTTAGACTGCACTCTTGCATTTGTTTTAACCAAGATGCATGCAAGGTTCCTCTTTGCAGGTATGCGAAACAATAATTAAAATTATGCATTTTTTCATTACATTTTTTCATATAAAAAAAAGGAAAAACAAATAATAACTACAGCTGGTCTTTGTCATATAATTTTTTTTTATATTTTATTTATATGTTTTTTGTGCTTAGTATTGTTATTAATCGTTATTATTTTGGATAAAGTATTTATATTAGTTTTTATTCTTTTTGTACAAAGTGTTGTTATTATTATTATTTTTGTTAAGTAGCAATTGACTAATTGAGGAATATAATGGTTTTTCATGTGATCAATTAAATTAAAGTGAATATGCAAACAAATTAACCTTTGAAATTAACCATCAATGGGTATATCATACAAAGAAATACATGTAGCTAACTACTAACGTGGCATATTTTTACATTCGTTGGGTGCACAAAGTGACAAAACCAACACGGTACGTATACATTATATGGTAATTGCATCTGTCTTCAATATCGTGAGCATGCATGCATGCCAAACATTTTAGTGAGTTAGTCATTGACTAATTATTTGTCTTAATTCTTGTAGTTACTAGTTTTCATTTAGGGTATTTGGTTAATAAAGCTATATTTACGGAAATGTGACAGGAAATATCAATTGATAGCTGAGAAAGAGAACAAGGAAGGTGATACGAGGTGGAAACAAATAGTGGGGAAAGTAGCATCAACCATAGCCATGTCTTCCTTACAATTGCTAAGGACAAGGAGAGATGAGGTAATTCGGAATACTAGAGTAGAGGAAGAGGAAGATCAGTCAAGAGAGTCTTCTAATTGGTGGACAAATGCAATTGCATGTTTTCGGTGTATCTAA
Protein sequence

>MS.gene052620.t1

MASLFSPIVSPTRFSPKTYIYIHTPSGIVPFPVHATVLVSASPVLKEMVTSNGNVKICGVPTNAAIAFVHFIYTSRCSREDMKNYGIHLLVLSHVFAMPKLKQRCIVDLIQFMTTGNVVDVLHLAKLCDAPNLYLKCVKLVTNNFEAVKETEGWKLLHKHDPWLEVDIIRLNKERESRKKRGNKHREEQKLFVQLSEAVQCLEHICTEGCTNVASYDVEITGRPCTKFSTCQALQGLIKHFTTCNRRLERGCRCCKSMWQLLRLHSCICFNQDACKVPLCRKYQLIAEKENKEGDTRWKQIVGKVASTIAMSSLQLLRTRRDEVIRNTRVEEEEDQSRESSNWWTNAIACFRCI