Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052655.t1 | AES98673.1 | 29.8 | 255 | 143 | 3 | 22 | 243 | 20 | 271 | 8.30E-21 | 110.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052655.t1 | G7JZK4 | 29.8 | 255 | 143 | 3 | 22 | 243 | 20 | 271 | 6.0e-21 | 110.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene052655.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052655.t1 | MTR_5g071410 | 30.469 | 256 | 142 | 3 | 21 | 243 | 19 | 271 | 1.32e-30 | 114 |
MS.gene052655.t1 | MTR_3g082920 | 49.057 | 106 | 38 | 2 | 30 | 133 | 327 | 418 | 1.05e-20 | 90.5 |
MS.gene052655.t1 | MTR_6g477950 | 49.412 | 85 | 42 | 1 | 156 | 240 | 61 | 144 | 2.44e-19 | 85.5 |
MS.gene052655.t1 | MTR_7g117585 | 37.736 | 106 | 66 | 0 | 138 | 243 | 43 | 148 | 1.04e-18 | 80.1 |
MS.gene052655.t1 | MTR_8g069780 | 41.250 | 80 | 47 | 0 | 161 | 240 | 76 | 155 | 9.92e-15 | 69.7 |
MS.gene052655.t1 | MTR_2g012700 | 30.508 | 118 | 76 | 2 | 125 | 240 | 6 | 119 | 3.29e-13 | 64.7 |
MS.gene052655.t1 | MTR_3g117130 | 42.683 | 82 | 47 | 0 | 159 | 240 | 197 | 278 | 3.88e-13 | 67.8 |
MS.gene052655.t1 | MTR_2g062330 | 35.366 | 82 | 52 | 1 | 159 | 240 | 58 | 138 | 1.22e-12 | 63.9 |
MS.gene052655.t1 | MTR_0010s0310 | 25.424 | 236 | 137 | 6 | 20 | 231 | 20 | 240 | 9.38e-12 | 63.5 |
MS.gene052655.t1 | MTR_2g437520 | 39.759 | 83 | 47 | 1 | 161 | 240 | 121 | 203 | 9.74e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 55 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCAGAAGTCGTGAAATTT+TGG | 0.193946 | 3.3:+43362287 | None:intergenic |
GCAAACTTATCACTTCAAAT+AGG | 0.238418 | 3.3:-43361829 | MS.gene052655:CDS |
AGCCAAAATTTCACGACTTC+TGG | 0.271151 | 3.3:-43362289 | MS.gene052655:CDS |
TCACCTAAGTATTTCTCATT+TGG | 0.308885 | 3.3:+43361803 | None:intergenic |
AAACTGCAAAAGTATGATTA+TGG | 0.310821 | 3.3:-43362367 | MS.gene052655:CDS |
CAAACTTATCACTTCAAATA+GGG | 0.313955 | 3.3:-43361828 | MS.gene052655:CDS |
ACCTGTGTACGAGTTAAGTT+TGG | 0.331180 | 3.3:-43362322 | MS.gene052655:CDS |
GCAGTTGATAGATATCTTAT+TGG | 0.337824 | 3.3:+43361913 | None:intergenic |
CAGGTTCAAGATGATGGTTT+TGG | 0.363392 | 3.3:-43362194 | MS.gene052655:CDS |
AGTATGATTATGGATGGATT+AGG | 0.381484 | 3.3:-43362357 | MS.gene052655:CDS |
CAGTTGATAGATATCTTATT+GGG | 0.382252 | 3.3:+43361914 | None:intergenic |
TCTACTATCCTTCACGAACT+TGG | 0.384344 | 3.3:+43361772 | None:intergenic |
CGCTTTCCAATGGAATCAAC+CGG | 0.384860 | 3.3:-43363070 | None:intergenic |
ACAGGAGAGCATTACTTTGC+AGG | 0.396717 | 3.3:-43361879 | MS.gene052655:CDS |
ACGTCGCAGCTAAATTCAAC+TGG | 0.409112 | 3.3:-43362261 | MS.gene052655:CDS |
ACTCGTACACAGGTGCCATT+TGG | 0.409607 | 3.3:+43362331 | None:intergenic |
TAAGTTTGCACTCATATTCT+CGG | 0.417716 | 3.3:+43361843 | None:intergenic |
AACTATCATTTATCCACAAC+AGG | 0.425989 | 3.3:-43362548 | MS.gene052655:intron |
GTATGATTATGGATGGATTA+GGG | 0.435600 | 3.3:-43362356 | MS.gene052655:CDS |
GGTTGTCCGACGTCGTCGTT+AGG | 0.436504 | 3.3:-43361687 | None:intergenic |
ACCTCCACAAAGAGACGATT+GGG | 0.451863 | 3.3:+43361707 | None:intergenic |
AGAAATACTTAGGTGAAGAT+TGG | 0.462766 | 3.3:-43361796 | MS.gene052655:CDS |
TCCTCCCAATCGTCTCTTTG+TGG | 0.465471 | 3.3:-43361711 | MS.gene052655:CDS |
GTAATGCTCTCCTGTGTGTC+GGG | 0.473972 | 3.3:+43361887 | None:intergenic |
CAATGGAATCAACCGGGAAA+AGG | 0.480353 | 3.3:-43363063 | MS.gene052655:intron |
TGGATGAAGTTGGAAGTTCA+AGG | 0.497813 | 3.3:-43362171 | MS.gene052655:CDS |
CGTGTTAGACTTGAATATAC+TGG | 0.498920 | 3.3:-43362226 | MS.gene052655:CDS |
CCTGTGTACGAGTTAAGTTT+GGG | 0.512909 | 3.3:-43362321 | MS.gene052655:CDS |
GGTCCAAATGAGAAATACTT+AGG | 0.515401 | 3.3:-43361806 | MS.gene052655:CDS |
TGCAAAAGTATGATTATGGA+TGG | 0.520237 | 3.3:-43362363 | MS.gene052655:CDS |
TGGATAAATGATAGTTTCGA+AGG | 0.529484 | 3.3:+43362555 | None:intergenic |
CTACTATCCTTCACGAACTT+GGG | 0.542504 | 3.3:+43361773 | None:intergenic |
AACCTCCACAAAGAGACGAT+TGG | 0.547571 | 3.3:+43361706 | None:intergenic |
TATTCAAGTCTAACACGTGT+TGG | 0.547805 | 3.3:+43362232 | None:intergenic |
AAATTTCACGACTTCTGGTA+GGG | 0.551367 | 3.3:-43362284 | MS.gene052655:CDS |
CAACAAGAGATGTCAAGTAA+TGG | 0.551729 | 3.3:-43362041 | MS.gene052655:intron |
TTCAAGGGGAAATACAATCA+AGG | 0.560197 | 3.3:-43362155 | MS.gene052655:CDS |
TCCCAATCGTCTCTTTGTGG+AGG | 0.560244 | 3.3:-43361708 | MS.gene052655:CDS |
GGATGAAGTTGGAAGTTCAA+GGG | 0.560255 | 3.3:-43362170 | MS.gene052655:CDS |
AGTAATGCTCTCCTGTGTGT+CGG | 0.561176 | 3.3:+43361886 | None:intergenic |
TCGTGAAGGATAGTAGACTA+AGG | 0.562838 | 3.3:-43361766 | MS.gene052655:CDS |
GGATGGATTAGGGATCCAAA+TGG | 0.577469 | 3.3:-43362346 | MS.gene052655:CDS |
CCCAAACTTAACTCGTACAC+AGG | 0.584015 | 3.3:+43362321 | None:intergenic |
AAAATTTCACGACTTCTGGT+AGG | 0.588749 | 3.3:-43362285 | MS.gene052655:CDS |
AAACTTATCACTTCAAATAG+GGG | 0.599416 | 3.3:-43361827 | MS.gene052655:CDS |
GATGAAGTTGGAAGTTCAAG+GGG | 0.628048 | 3.3:-43362169 | MS.gene052655:CDS |
CGTCGCAGCTAAATTCAACT+GGG | 0.629434 | 3.3:-43362260 | MS.gene052655:CDS |
AAGGATAGTAGACTAAGGAA+AGG | 0.649294 | 3.3:-43361761 | MS.gene052655:CDS |
CAACTGCTTACCCGACACAC+AGG | 0.661269 | 3.3:-43361897 | MS.gene052655:CDS |
TCCACAAAGAGACGATTGGG+AGG | 0.661851 | 3.3:+43361710 | None:intergenic |
GCTTTCCAATGGAATCAACC+GGG | 0.669471 | 3.3:-43363069 | None:intergenic |
TAATATCCTAACGACGACGT+CGG | 0.679159 | 3.3:+43361681 | None:intergenic |
AGATTGGCCCAAGTTCGTGA+AGG | 0.685876 | 3.3:-43361780 | MS.gene052655:CDS |
TAGTTTCGAAGGAATTCACG+AGG | 0.693574 | 3.3:+43362566 | None:intergenic |
AGTTTCGAAGGAATTCACGA+GGG | 0.715405 | 3.3:+43362567 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTCATAAATAATATTAATT+TGG | + | chr3.3:43362743-43362762 | None:intergenic | 10.0% |
!!! | TTTTTATTATATTCTTTCTA+TGG | + | chr3.3:43362069-43362088 | None:intergenic | 10.0% |
!! | ATACATATTTATGATTTAAC+AGG | - | chr3.3:43361992-43362011 | MS.gene052655:intron | 15.0% |
!! | TTTCAGTAACAAAAAAAATT+TGG | + | chr3.3:43361895-43361914 | None:intergenic | 15.0% |
!!! | ATATTTTATCAAATTTCGTA+TGG | - | chr3.3:43362268-43362287 | MS.gene052655:CDS | 15.0% |
!! | TAAAACATAGAAGGTAATAT+GGG | - | chr3.3:43361808-43361827 | MS.gene052655:CDS | 20.0% |
! | AAACTTATCACTTCAAATAG+GGG | - | chr3.3:43362922-43362941 | MS.gene052655:intron | 25.0% |
! | ACATATAAGATGTATAAGTC+AGG | + | chr3.3:43362296-43362315 | None:intergenic | 25.0% |
! | AGGTATTACAAAATATTGCT+TGG | - | chr3.3:43362221-43362240 | MS.gene052655:CDS | 25.0% |
! | ATATAAGATGTATAAGTCAG+GGG | + | chr3.3:43362294-43362313 | None:intergenic | 25.0% |
! | CAAACTTATCACTTCAAATA+GGG | - | chr3.3:43362921-43362940 | MS.gene052655:intron | 25.0% |
! | CACTATTACTATATTTACGA+TGG | + | chr3.3:43361761-43361780 | None:intergenic | 25.0% |
! | CATATAAGATGTATAAGTCA+GGG | + | chr3.3:43362295-43362314 | None:intergenic | 25.0% |
! | CATCGTAAATATAGTAATAG+TGG | - | chr3.3:43361759-43361778 | MS.gene052655:CDS | 25.0% |
! | CTAAAACATAGAAGGTAATA+TGG | - | chr3.3:43361807-43361826 | MS.gene052655:CDS | 25.0% |
!! | AAACTGCAAAAGTATGATTA+TGG | - | chr3.3:43362382-43362401 | MS.gene052655:CDS | 25.0% |
!! | ATATTTTGTAATACCTGTTG+TGG | + | chr3.3:43362217-43362236 | None:intergenic | 25.0% |
!! | TTTTTACATATCCCATGTTA+TGG | - | chr3.3:43362030-43362049 | MS.gene052655:intron | 25.0% |
!!! | CAGTTGATAGATATCTTATT+GGG | + | chr3.3:43362838-43362857 | None:intergenic | 25.0% |
AACTATCATTTATCCACAAC+AGG | - | chr3.3:43362201-43362220 | MS.gene052655:CDS | 30.0% | |
AGAAATACTTAGGTGAAGAT+TGG | - | chr3.3:43362953-43362972 | MS.gene052655:intron | 30.0% | |
ATATCCCATGTTATGGAATT+CGG | - | chr3.3:43362037-43362056 | MS.gene052655:intron | 30.0% | |
CACATATCCTTATCAAGTTT+AGG | - | chr3.3:43361917-43361936 | MS.gene052655:CDS | 30.0% | |
CTAAACTTGATAAGGATATG+TGG | + | chr3.3:43361919-43361938 | None:intergenic | 30.0% | |
GCAAACTTATCACTTCAAAT+AGG | - | chr3.3:43362920-43362939 | MS.gene052655:intron | 30.0% | |
TAAGTTTGCACTCATATTCT+CGG | + | chr3.3:43362909-43362928 | None:intergenic | 30.0% | |
TCACCTAAGTATTTCTCATT+TGG | + | chr3.3:43362949-43362968 | None:intergenic | 30.0% | |
TGGATAAATGATAGTTTCGA+AGG | + | chr3.3:43362197-43362216 | None:intergenic | 30.0% | |
! | ACATGCAATTTTGTAATGAG+TGG | - | chr3.3:43361952-43361971 | MS.gene052655:intron | 30.0% |
! | AGAGTAAAATTACCTTTTCC+CGG | + | chr3.3:43361701-43361720 | None:intergenic | 30.0% |
! | AGTATGATTATGGATGGATT+AGG | - | chr3.3:43362392-43362411 | MS.gene052655:CDS | 30.0% |
! | CTGATTATGATCATTTTGAG+AGG | - | chr3.3:43362662-43362681 | MS.gene052655:intron | 30.0% |
! | GTAATATGGGTTCTTTTCTA+GGG | - | chr3.3:43361821-43361840 | MS.gene052655:CDS | 30.0% |
! | TGCAAAAGTATGATTATGGA+TGG | - | chr3.3:43362386-43362405 | MS.gene052655:CDS | 30.0% |
! | TTTTAACAGGTTCAAGATGA+TGG | - | chr3.3:43362549-43362568 | MS.gene052655:CDS | 30.0% |
!! | GCAGTTGATAGATATCTTAT+TGG | + | chr3.3:43362839-43362858 | None:intergenic | 30.0% |
!! | GTATGATTATGGATGGATTA+GGG | - | chr3.3:43362393-43362412 | MS.gene052655:CDS | 30.0% |
AAAATTTCACGACTTCTGGT+AGG | - | chr3.3:43362464-43362483 | MS.gene052655:intron | 35.0% | |
AAATTTCACGACTTCTGGTA+GGG | - | chr3.3:43362465-43362484 | MS.gene052655:intron | 35.0% | |
AAGGATAGTAGACTAAGGAA+AGG | - | chr3.3:43362988-43363007 | MS.gene052655:intron | 35.0% | |
CAACAAGAGATGTCAAGTAA+TGG | - | chr3.3:43362708-43362727 | MS.gene052655:intron | 35.0% | |
CGTGTTAGACTTGAATATAC+TGG | - | chr3.3:43362523-43362542 | MS.gene052655:intron | 35.0% | |
GGTCCAAATGAGAAATACTT+AGG | - | chr3.3:43362943-43362962 | MS.gene052655:intron | 35.0% | |
TAAGGTGGCTAAAACATAGA+AGG | - | chr3.3:43361799-43361818 | MS.gene052655:CDS | 35.0% | |
TATTCAAGTCTAACACGTGT+TGG | + | chr3.3:43362520-43362539 | None:intergenic | 35.0% | |
TTCAAGGGGAAATACAATCA+AGG | - | chr3.3:43362594-43362613 | MS.gene052655:CDS | 35.0% | |
! | AATATACTGGCGCTTTTAAC+AGG | - | chr3.3:43362536-43362555 | MS.gene052655:intron | 35.0% |
! | GGTAATATGGGTTCTTTTCT+AGG | - | chr3.3:43361820-43361839 | MS.gene052655:CDS | 35.0% |
! | TACCAGAAGTCGTGAAATTT+TGG | + | chr3.3:43362465-43362484 | None:intergenic | 35.0% |
ACCTGTGTACGAGTTAAGTT+TGG | - | chr3.3:43362427-43362446 | MS.gene052655:intron | 40.0% | |
AGCCAAAATTTCACGACTTC+TGG | - | chr3.3:43362460-43362479 | MS.gene052655:intron | 40.0% | |
AGTTTCGAAGGAATTCACGA+GGG | + | chr3.3:43362185-43362204 | None:intergenic | 40.0% | |
CCTGTGTACGAGTTAAGTTT+GGG | - | chr3.3:43362428-43362447 | MS.gene052655:intron | 40.0% | |
CCTTATCAAGTTTAGGCTGA+CGG | - | chr3.3:43361924-43361943 | MS.gene052655:intron | 40.0% | |
CTACTATCCTTCACGAACTT+GGG | + | chr3.3:43362979-43362998 | None:intergenic | 40.0% | |
GATGAAGTTGGAAGTTCAAG+GGG | - | chr3.3:43362580-43362599 | MS.gene052655:CDS | 40.0% | |
GGATGAAGTTGGAAGTTCAA+GGG | - | chr3.3:43362579-43362598 | MS.gene052655:CDS | 40.0% | |
TAGTTTCGAAGGAATTCACG+AGG | + | chr3.3:43362186-43362205 | None:intergenic | 40.0% | |
TCCACCGAATTCCATAACAT+GGG | + | chr3.3:43362044-43362063 | None:intergenic | 40.0% | |
TCGTGAAGGATAGTAGACTA+AGG | - | chr3.3:43362983-43363002 | MS.gene052655:intron | 40.0% | |
TCTACTATCCTTCACGAACT+TGG | + | chr3.3:43362980-43362999 | None:intergenic | 40.0% | |
TGGATGAAGTTGGAAGTTCA+AGG | - | chr3.3:43362578-43362597 | MS.gene052655:CDS | 40.0% | |
TTCCACCGAATTCCATAACA+TGG | + | chr3.3:43362045-43362064 | None:intergenic | 40.0% | |
!! | CAGGTTCAAGATGATGGTTT+TGG | - | chr3.3:43362555-43362574 | MS.gene052655:CDS | 40.0% |
!!! | ATGGTTTTGGTGGATGAAGT+TGG | - | chr3.3:43362568-43362587 | MS.gene052655:CDS | 40.0% |
!!! | GTTCAAGATGATGGTTTTGG+TGG | - | chr3.3:43362558-43362577 | MS.gene052655:CDS | 40.0% |
AACCTCCACAAAGAGACGAT+TGG | + | chr3.3:43363046-43363065 | None:intergenic | 45.0% | |
ACCTCCACAAAGAGACGATT+GGG | + | chr3.3:43363045-43363064 | None:intergenic | 45.0% | |
ACGTCGCAGCTAAATTCAAC+TGG | - | chr3.3:43362488-43362507 | MS.gene052655:intron | 45.0% | |
AGTAATGCTCTCCTGTGTGT+CGG | + | chr3.3:43362866-43362885 | None:intergenic | 45.0% | |
ATAGTGGTCCCCTATAGTCT+TGG | - | chr3.3:43361775-43361794 | MS.gene052655:CDS | 45.0% | |
CACCTTAGCCAAGACTATAG+GGG | + | chr3.3:43361786-43361805 | None:intergenic | 45.0% | |
CCACCTTAGCCAAGACTATA+GGG | + | chr3.3:43361787-43361806 | None:intergenic | 45.0% | |
CCCAAACTTAACTCGTACAC+AGG | + | chr3.3:43362431-43362450 | None:intergenic | 45.0% | |
CCGTCAGCCTAAACTTGATA+AGG | + | chr3.3:43361927-43361946 | None:intergenic | 45.0% | |
CGTCGCAGCTAAATTCAACT+GGG | - | chr3.3:43362489-43362508 | MS.gene052655:intron | 45.0% | |
TCCCATGTTATGGAATTCGG+TGG | - | chr3.3:43362040-43362059 | MS.gene052655:intron | 45.0% | |
!! | ACAGGAGAGCATTACTTTGC+AGG | - | chr3.3:43362870-43362889 | MS.gene052655:intron | 45.0% |
!! | GGATGGATTAGGGATCCAAA+TGG | - | chr3.3:43362403-43362422 | MS.gene052655:CDS | 45.0% |
GCCACCTTAGCCAAGACTAT+AGG | + | chr3.3:43361788-43361807 | None:intergenic | 50.0% | |
GTAATGCTCTCCTGTGTGTC+GGG | + | chr3.3:43362865-43362884 | None:intergenic | 50.0% | |
TCCACAAAGAGACGATTGGG+AGG | + | chr3.3:43363042-43363061 | None:intergenic | 50.0% | |
TCCCAATCGTCTCTTTGTGG+AGG | - | chr3.3:43363041-43363060 | MS.gene052655:intron | 50.0% | |
TCCTCCCAATCGTCTCTTTG+TGG | - | chr3.3:43363038-43363057 | MS.gene052655:intron | 50.0% | |
! | AGATTGGCCCAAGTTCGTGA+AGG | - | chr3.3:43362969-43362988 | MS.gene052655:intron | 50.0% |
! | CCCTATAGTCTTGGCTAAGG+TGG | - | chr3.3:43361784-43361803 | MS.gene052655:CDS | 50.0% |
! | GTCCCCTATAGTCTTGGCTA+AGG | - | chr3.3:43361781-43361800 | MS.gene052655:CDS | 50.0% |
!! | ACTCGTACACAGGTGCCATT+TGG | + | chr3.3:43362421-43362440 | None:intergenic | 50.0% |
CAACTGCTTACCCGACACAC+AGG | - | chr3.3:43362852-43362871 | MS.gene052655:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 43361688 | 43363083 | 43361688 | ID=MS.gene052655 |
chr3.3 | mRNA | 43361688 | 43363083 | 43361688 | ID=MS.gene052655.t1;Parent=MS.gene052655 |
chr3.3 | exon | 43363064 | 43363083 | 43363064 | ID=MS.gene052655.t1.exon1;Parent=MS.gene052655.t1 |
chr3.3 | CDS | 43363064 | 43363083 | 43363064 | ID=cds.MS.gene052655.t1;Parent=MS.gene052655.t1 |
chr3.3 | exon | 43362549 | 43362615 | 43362549 | ID=MS.gene052655.t1.exon2;Parent=MS.gene052655.t1 |
chr3.3 | CDS | 43362549 | 43362615 | 43362549 | ID=cds.MS.gene052655.t1;Parent=MS.gene052655.t1 |
chr3.3 | exon | 43362042 | 43362434 | 43362042 | ID=MS.gene052655.t1.exon3;Parent=MS.gene052655.t1 |
chr3.3 | CDS | 43362042 | 43362434 | 43362042 | ID=cds.MS.gene052655.t1;Parent=MS.gene052655.t1 |
chr3.3 | exon | 43361688 | 43361942 | 43361688 | ID=MS.gene052655.t1.exon4;Parent=MS.gene052655.t1 |
chr3.3 | CDS | 43361688 | 43361942 | 43361688 | ID=cds.MS.gene052655.t1;Parent=MS.gene052655.t1 |
Gene Sequence |
Protein sequence |