Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052656.t1 | GAU22574.1 | 53.1 | 162 | 74 | 2 | 228 | 388 | 568 | 728 | 1.10E-38 | 171 |
| MS.gene052656.t1 | GAU22574.1 | 53.4 | 88 | 41 | 0 | 138 | 225 | 52 | 139 | 6.50E-20 | 108.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052656.t1 | A0A2Z6LT40 | 53.1 | 162 | 74 | 2 | 228 | 388 | 568 | 728 | 7.7e-39 | 171.0 |
| MS.gene052656.t1 | A0A2Z6LT40 | 53.4 | 88 | 41 | 0 | 138 | 225 | 52 | 139 | 4.7e-20 | 108.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052656.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052656.t1 | MTR_1g070355 | 40.972 | 144 | 75 | 3 | 83 | 225 | 4 | 138 | 7.02e-24 | 103 |
| MS.gene052656.t1 | MTR_3g448650 | 31.034 | 116 | 74 | 2 | 102 | 217 | 29 | 138 | 3.71e-14 | 70.5 |
| MS.gene052656.t1 | MTR_0060s0090 | 40.476 | 84 | 46 | 1 | 164 | 247 | 59 | 138 | 1.15e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 109 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTGTGAACAATTTAT+TGG | 0.175600 | 3.3:-43366295 | MS.gene052656:CDS |
| GCATTGGACCTAAGTGGTTT+AGG | 0.241561 | 3.3:-43365860 | MS.gene052656:CDS |
| CAAGTGGTCATCCGACATTT+TGG | 0.259054 | 3.3:-43364143 | MS.gene052656:CDS |
| CAATTTATTGGGCCTGAAAA+AGG | 0.266409 | 3.3:-43366283 | MS.gene052656:CDS |
| ATCAAAGTCACTAATGTTTC+CGG | 0.287438 | 3.3:+43366105 | None:intergenic |
| CATTGGACCTAAGTGGTTTA+GGG | 0.287558 | 3.3:-43365859 | MS.gene052656:CDS |
| AGAGGTTTGGGTTGAGGAGG+GGG | 0.288365 | 3.3:-43366215 | MS.gene052656:CDS |
| CGTCCACCGCGTCATCTTCA+AGG | 0.302526 | 3.3:+43363956 | None:intergenic |
| TGAGCATATCATTGCAGTTT+TGG | 0.306428 | 3.3:-43364250 | MS.gene052656:CDS |
| TTTCCCTATATCCTAGTCTA+TGG | 0.314582 | 3.3:+43365687 | None:intergenic |
| AATGCTGACATTGAAGAATA+TGG | 0.316586 | 3.3:-43366025 | MS.gene052656:CDS |
| TTGATTGTGAACAATTTATT+GGG | 0.333896 | 3.3:-43366294 | MS.gene052656:CDS |
| GTTTAGGGCCTCTATTTGTT+AGG | 0.338727 | 3.3:-43365844 | MS.gene052656:CDS |
| GAGGTTTGGGTTGAGGAGGG+GGG | 0.344631 | 3.3:-43366214 | MS.gene052656:CDS |
| TTTGATGAAGGGGTCAATTA+TGG | 0.349566 | 3.3:-43366088 | MS.gene052656:CDS |
| TGAAGAAGAGGTTTGGGTTG+AGG | 0.359822 | 3.3:-43366221 | MS.gene052656:CDS |
| CTAATGTCTACCCCTTCTTC+AGG | 0.365813 | 3.3:+43366250 | None:intergenic |
| ACGAAGCATTGATGTCTAGA+TGG | 0.375449 | 3.3:-43364098 | MS.gene052656:CDS |
| TTGCCATAGACTAGGATATA+GGG | 0.378451 | 3.3:-43365690 | MS.gene052656:CDS |
| GAGAATCTGAAGAAGAGGTT+TGG | 0.387003 | 3.3:-43366228 | MS.gene052656:CDS |
| AAGAGGTTTGGGTTGAGGAG+GGG | 0.391610 | 3.3:-43366216 | MS.gene052656:CDS |
| ACTTATGCCTCTCATTTGTT+CGG | 0.395053 | 3.3:+43363993 | None:intergenic |
| TTTGCCATAGACTAGGATAT+AGG | 0.412972 | 3.3:-43365691 | MS.gene052656:CDS |
| CACTTGAAAATGTCTTCTGC+AGG | 0.413618 | 3.3:+43364309 | None:intergenic |
| AGAATCTGAAGAAGAGGTTT+GGG | 0.413927 | 3.3:-43366227 | MS.gene052656:CDS |
| GAAGAGGTTTGGGTTGAGGA+GGG | 0.419333 | 3.3:-43366217 | MS.gene052656:CDS |
| CCTTTAGTTCTGACAGAAGC+TGG | 0.420181 | 3.3:+43363919 | None:intergenic |
| AAGTTGCTTTATTGCAAAAC+GGG | 0.422706 | 3.3:-43365737 | MS.gene052656:CDS |
| AATGTTGAGTTTGACGAAGA+TGG | 0.422787 | 3.3:-43366142 | MS.gene052656:CDS |
| AATCCCTTGTAATGAGTAGA+TGG | 0.426360 | 3.3:-43364200 | MS.gene052656:CDS |
| TGTCAAAGGATGGAGTCATT+TGG | 0.430337 | 3.3:-43364282 | MS.gene052656:CDS |
| CAAGTTGCTTTATTGCAAAA+CGG | 0.435164 | 3.3:-43365738 | MS.gene052656:CDS |
| CCAGCTTCTGTCAGAACTAA+AGG | 0.436376 | 3.3:-43363919 | MS.gene052656:CDS |
| AATAAAGCAACTTGCCTTTG+CGG | 0.443504 | 3.3:+43365747 | None:intergenic |
| GATGCAGAAGGGGTAGACTA+TGG | 0.449884 | 3.3:-43365953 | MS.gene052656:CDS |
| AACATTAGTGACTTTGATGA+AGG | 0.453377 | 3.3:-43366100 | MS.gene052656:CDS |
| CGTCCTCAACACTATCAACT+TGG | 0.462744 | 3.3:+43365888 | None:intergenic |
| GATACACGCCACTCCCGGTC+TGG | 0.462923 | 3.3:+43364339 | None:intergenic |
| TATGAGTTCTATAAATCCTA+TGG | 0.471575 | 3.3:-43365791 | MS.gene052656:CDS |
| TTGTCCATCTACTCATTACA+AGG | 0.479590 | 3.3:+43364196 | None:intergenic |
| TTTGTTAGGAGAATTGCGTT+TGG | 0.482820 | 3.3:-43365830 | MS.gene052656:CDS |
| ACATGAGGCCAGACCGGGAG+TGG | 0.484974 | 3.3:-43364347 | MS.gene052656:CDS |
| AAGATGGAAGTGATGAAGAA+GGG | 0.485499 | 3.3:-43366054 | MS.gene052656:CDS |
| GCAATTCTCCTAACAAATAG+AGG | 0.486616 | 3.3:+43365836 | None:intergenic |
| CAAGTGTGCTTGTCAAAGGA+TGG | 0.486950 | 3.3:-43364292 | MS.gene052656:CDS |
| AGAAGAGGTTTGGGTTGAGG+AGG | 0.488296 | 3.3:-43366218 | MS.gene052656:CDS |
| CGATGACTACAAAGAGCAAA+TGG | 0.490292 | 3.3:-43364043 | MS.gene052656:CDS |
| GAAGATGGAAGTGATGAAGA+AGG | 0.490931 | 3.3:-43366055 | MS.gene052656:CDS |
| CGAAGCATTGATGTCTAGAT+GGG | 0.493225 | 3.3:-43364097 | MS.gene052656:CDS |
| TGTTGAGGACGTTGTGGCAT+TGG | 0.493296 | 3.3:-43365876 | MS.gene052656:CDS |
| TTTGACGAAGATGGAGGTAG+AGG | 0.507926 | 3.3:-43366133 | MS.gene052656:CDS |
| GAATATGGAAGTGATGAAGA+AGG | 0.510921 | 3.3:-43366010 | MS.gene052656:CDS |
| CCTATTGTTTGTTCAACTAG+TGG | 0.513149 | 3.3:+43363876 | None:intergenic |
| AGATGGAAGTGATGAAGAAG+GGG | 0.515964 | 3.3:-43366053 | MS.gene052656:CDS |
| AATATGGAAGTGATGAAGAA+GGG | 0.516003 | 3.3:-43366009 | MS.gene052656:CDS |
| GATGGAGGTAGAGGGCAATC+CGG | 0.516291 | 3.3:-43366124 | MS.gene052656:CDS |
| CACTATCAACTTGGACATAG+TGG | 0.517223 | 3.3:+43365897 | None:intergenic |
| CATTAGAGAATCTGAAGAAG+AGG | 0.518932 | 3.3:-43366233 | MS.gene052656:CDS |
| AATGGTAACATGGAATATGA+TGG | 0.519595 | 3.3:-43366187 | MS.gene052656:CDS |
| AAAGGTAGAGGTGGTGGTGT+TGG | 0.522448 | 3.3:-43363901 | MS.gene052656:CDS |
| AAATCCATTCGCTCTTCCAT+AGG | 0.527086 | 3.3:+43365775 | None:intergenic |
| TAAGTACATGAGGCCAGACC+GGG | 0.532082 | 3.3:-43364352 | MS.gene052656:CDS |
| GCTGCTACTTAATACGTCCT+TGG | 0.532350 | 3.3:+43364167 | None:intergenic |
| TATGGTGACATGGAAGAAGA+TGG | 0.533811 | 3.3:-43366070 | MS.gene052656:CDS |
| AAATCCTATGGAAGAGCGAA+TGG | 0.535778 | 3.3:-43365779 | MS.gene052656:CDS |
| TATGGTGACATGGAAGAAGA+TGG | 0.540056 | 3.3:-43365935 | MS.gene052656:CDS |
| ATAAGTACATGAGGCCAGAC+CGG | 0.542402 | 3.3:-43364353 | MS.gene052656:CDS |
| TATGATGGAAGTGATTATGA+AGG | 0.544947 | 3.3:-43366172 | MS.gene052656:CDS |
| CTACTCATTACAAGGGATTG+AGG | 0.547911 | 3.3:+43364204 | None:intergenic |
| AGAACTAAAGGTAGAGGTGG+TGG | 0.551384 | 3.3:-43363907 | MS.gene052656:CDS |
| GGTGATGGAAGTCCTGAAGA+AGG | 0.557553 | 3.3:-43366262 | MS.gene052656:CDS |
| ACATTTGTTTGCCATAGACT+AGG | 0.563483 | 3.3:-43365698 | MS.gene052656:CDS |
| CATTAGTGACTTTGATGAAG+GGG | 0.564858 | 3.3:-43366098 | MS.gene052656:CDS |
| GACGATGGAAGTGATGCAGA+AGG | 0.568544 | 3.3:-43365965 | MS.gene052656:CDS |
| TAAATGATACACGCCACTCC+CGG | 0.571008 | 3.3:+43364334 | None:intergenic |
| ATTGTTCACAATCAAAAGCT+CGG | 0.573528 | 3.3:+43366302 | None:intergenic |
| GTGATGGAAGTCCTGAAGAA+GGG | 0.574757 | 3.3:-43366261 | MS.gene052656:CDS |
| TCTGTCAGAACTAAAGGTAG+AGG | 0.578632 | 3.3:-43363913 | MS.gene052656:CDS |
| AGAACTCATATGCAATGTCT+AGG | 0.580623 | 3.3:+43365804 | None:intergenic |
| CGATGGAAGTGATGCAGAAG+GGG | 0.589903 | 3.3:-43365963 | MS.gene052656:CDS |
| ATATGGAAGTGATGAAGAAG+GGG | 0.595089 | 3.3:-43366008 | MS.gene052656:CDS |
| GTCATCTTCAAGGTTTGTCG+TGG | 0.598881 | 3.3:+43363966 | None:intergenic |
| ACATTAGTGACTTTGATGAA+GGG | 0.602492 | 3.3:-43366099 | MS.gene052656:CDS |
| ACGATGGAAGTGATGCAGAA+GGG | 0.604212 | 3.3:-43365964 | MS.gene052656:CDS |
| TTGACGAAGATGGAGGTAGA+GGG | 0.608903 | 3.3:-43366132 | MS.gene052656:CDS |
| GTCAGAACTAAAGGTAGAGG+TGG | 0.615727 | 3.3:-43363910 | MS.gene052656:CDS |
| ATAGAGGCCCTAAACCACTT+AGG | 0.619141 | 3.3:+43365852 | None:intergenic |
| GTTGTGGCATTGGACCTAAG+TGG | 0.621849 | 3.3:-43365866 | MS.gene052656:CDS |
| GTATTAAGTAGCAGCTCAAG+TGG | 0.623626 | 3.3:-43364159 | MS.gene052656:CDS |
| ATGCTTCGTATCTTGTAGCA+TGG | 0.623805 | 3.3:+43364112 | None:intergenic |
| TTGAAAGCCGAACAAATGAG+AGG | 0.623945 | 3.3:-43364000 | MS.gene052656:CDS |
| TGTCCATCTACTCATTACAA+GGG | 0.625754 | 3.3:+43364197 | None:intergenic |
| TGATGGAAGTCCTGAAGAAG+GGG | 0.631965 | 3.3:-43366260 | MS.gene052656:CDS |
| TGTCCAAGTTGATAGTGTTG+AGG | 0.634638 | 3.3:-43365891 | MS.gene052656:CDS |
| ACTGCAATGATATGCTCACA+TGG | 0.637565 | 3.3:+43364255 | None:intergenic |
| GTTGAGTTTGACGAAGATGG+AGG | 0.639808 | 3.3:-43366139 | MS.gene052656:CDS |
| ACTTGAAAATGTCTTCTGCA+GGG | 0.641856 | 3.3:+43364310 | None:intergenic |
| AGGGGTCAATTATGGTGACA+TGG | 0.648973 | 3.3:-43366080 | MS.gene052656:CDS |
| ATACAGTTAATAAGTACATG+AGG | 0.652022 | 3.3:-43364362 | MS.gene052656:intron |
| TCTAAATTAGTCATTGACAA+CGG | 0.654146 | 3.3:-43364066 | MS.gene052656:CDS |
| AATGCTGACATTGAAGACGA+TGG | 0.658945 | 3.3:-43365980 | MS.gene052656:CDS |
| AGGGGTAGACTATGGTGACA+TGG | 0.659480 | 3.3:-43365945 | MS.gene052656:CDS |
| GAAGCATTGATGTCTAGATG+GGG | 0.660190 | 3.3:-43364096 | MS.gene052656:CDS |
| TGATAGTGTTGAGGACGTTG+TGG | 0.677130 | 3.3:-43365882 | MS.gene052656:CDS |
| TGGTGTGAGTCCCAAAATGT+CGG | 0.680782 | 3.3:+43364132 | None:intergenic |
| AAGCATTGATGTCTAGATGG+GGG | 0.687975 | 3.3:-43364095 | MS.gene052656:CDS |
| CAAAGAGCAAATGGACATTG+CGG | 0.708700 | 3.3:-43364034 | MS.gene052656:CDS |
| GACAAACCTTGAAGATGACG+CGG | 0.713712 | 3.3:-43363962 | MS.gene052656:CDS |
| AAACCTTGAAGATGACGCGG+TGG | 0.719654 | 3.3:-43363959 | MS.gene052656:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAACAATATGTTAAAAAG+TGG | - | chr3.3:43364746-43364765 | MS.gene052656:intron | 20.0% |
| !! | TTGATTGTGAACAATTTATT+GGG | - | chr3.3:43363904-43363923 | MS.gene052656:CDS | 20.0% |
| !! | TTTGATTGTGAACAATTTAT+TGG | - | chr3.3:43363903-43363922 | MS.gene052656:CDS | 20.0% |
| ! | ATACAGTTAATAAGTACATG+AGG | - | chr3.3:43365836-43365855 | MS.gene052656:CDS | 25.0% |
| ! | TATGAGTTCTATAAATCCTA+TGG | - | chr3.3:43364407-43364426 | MS.gene052656:intron | 25.0% |
| ! | TCTAAATTAGTCATTGACAA+CGG | - | chr3.3:43366132-43366151 | MS.gene052656:CDS | 25.0% |
| !! | CAATTTAGAAAGTGTATGTT+GGG | - | chr3.3:43365361-43365380 | MS.gene052656:intron | 25.0% |
| !! | GATATGATAAAATTGGTTTC+CGG | - | chr3.3:43364816-43364835 | MS.gene052656:intron | 25.0% |
| !! | TCAATTTAGAAAGTGTATGT+TGG | - | chr3.3:43365360-43365379 | MS.gene052656:intron | 25.0% |
| !!! | AACTCTACTATTATTTTTGC+TGG | - | chr3.3:43365118-43365137 | MS.gene052656:intron | 25.0% |
| AAAAGGAAGAAACTTATGTC+TGG | - | chr3.3:43365158-43365177 | MS.gene052656:intron | 30.0% | |
| AAAGGAAGAAACTTATGTCT+GGG | - | chr3.3:43365159-43365178 | MS.gene052656:intron | 30.0% | |
| AAATGAAGCATATATGCGAT+TGG | + | chr3.3:43364780-43364799 | None:intergenic | 30.0% | |
| AACATTAGTGACTTTGATGA+AGG | - | chr3.3:43364098-43364117 | MS.gene052656:CDS | 30.0% | |
| AATATGGAAGTGATGAAGAA+GGG | - | chr3.3:43364189-43364208 | MS.gene052656:CDS | 30.0% | |
| AATGAAGCATATATGCGATT+GGG | + | chr3.3:43364779-43364798 | None:intergenic | 30.0% | |
| AATGCTGACATTGAAGAATA+TGG | - | chr3.3:43364173-43364192 | MS.gene052656:CDS | 30.0% | |
| AATGGTAACATGGAATATGA+TGG | - | chr3.3:43364011-43364030 | MS.gene052656:CDS | 30.0% | |
| ACATTAGTGACTTTGATGAA+GGG | - | chr3.3:43364099-43364118 | MS.gene052656:CDS | 30.0% | |
| AGAAACATATACGAAGAGAA+AGG | - | chr3.3:43365465-43365484 | MS.gene052656:intron | 30.0% | |
| ATACAATCATTGCAGAAGAT+CGG | + | chr3.3:43365783-43365802 | None:intergenic | 30.0% | |
| ATCAAAGTCACTAATGTTTC+CGG | + | chr3.3:43364096-43364115 | None:intergenic | 30.0% | |
| ATTAAGTTATCTTCGTGGAT+TGG | - | chr3.3:43364904-43364923 | MS.gene052656:intron | 30.0% | |
| ATTGTTCACAATCAAAAGCT+CGG | + | chr3.3:43363899-43363918 | None:intergenic | 30.0% | |
| ! | AAGTTGCTTTATTGCAAAAC+GGG | - | chr3.3:43364461-43364480 | MS.gene052656:intron | 30.0% |
| ! | ATTTGGAAACACTCGTTTTA+TGG | + | chr3.3:43365266-43365285 | None:intergenic | 30.0% |
| ! | CAAGTTGCTTTATTGCAAAA+CGG | - | chr3.3:43364460-43364479 | MS.gene052656:intron | 30.0% |
| ! | GTAGACTTTGAAAGTGATTA+TGG | - | chr3.3:43365661-43365680 | MS.gene052656:CDS | 30.0% |
| ! | TATGATGGAAGTGATTATGA+AGG | - | chr3.3:43364026-43364045 | MS.gene052656:CDS | 30.0% |
| AAGATGGAAGTGATGAAGAA+GGG | - | chr3.3:43364144-43364163 | MS.gene052656:CDS | 35.0% | |
| AATAAAGCAACTTGCCTTTG+CGG | + | chr3.3:43364454-43364473 | None:intergenic | 35.0% | |
| AATCCCTTGTAATGAGTAGA+TGG | - | chr3.3:43365998-43366017 | MS.gene052656:CDS | 35.0% | |
| AATGTTGAGTTTGACGAAGA+TGG | - | chr3.3:43364056-43364075 | MS.gene052656:CDS | 35.0% | |
| ACATTTGTTTGCCATAGACT+AGG | - | chr3.3:43364500-43364519 | MS.gene052656:intron | 35.0% | |
| ACTTATGCCTCTCATTTGTT+CGG | + | chr3.3:43366208-43366227 | None:intergenic | 35.0% | |
| ACTTGAAAATGTCTTCTGCA+GGG | + | chr3.3:43365891-43365910 | None:intergenic | 35.0% | |
| AGAACTCATATGCAATGTCT+AGG | + | chr3.3:43364397-43364416 | None:intergenic | 35.0% | |
| AGAATCTGAAGAAGAGGTTT+GGG | - | chr3.3:43363971-43363990 | MS.gene052656:CDS | 35.0% | |
| AGCTATTGTTGCTGATGAAA+AGG | - | chr3.3:43365141-43365160 | MS.gene052656:intron | 35.0% | |
| AGTGTGCTTGAAAAACATCA+TGG | + | chr3.3:43364942-43364961 | None:intergenic | 35.0% | |
| ATATGGAAGTGATGAAGAAG+GGG | - | chr3.3:43364190-43364209 | MS.gene052656:CDS | 35.0% | |
| CAAACACAACTAAATGGCAA+TGG | + | chr3.3:43365081-43365100 | None:intergenic | 35.0% | |
| CAATTTATTGGGCCTGAAAA+AGG | - | chr3.3:43363915-43363934 | MS.gene052656:CDS | 35.0% | |
| CACAGTCTATGATAAGCATT+TGG | + | chr3.3:43365283-43365302 | None:intergenic | 35.0% | |
| CATTAGAGAATCTGAAGAAG+AGG | - | chr3.3:43363965-43363984 | MS.gene052656:CDS | 35.0% | |
| CATTAGTGACTTTGATGAAG+GGG | - | chr3.3:43364100-43364119 | MS.gene052656:CDS | 35.0% | |
| CGTCTTGATTACCAAGTTTA+TGG | - | chr3.3:43365013-43365032 | MS.gene052656:intron | 35.0% | |
| CTAGGATATAGGGAAAAAAG+AGG | - | chr3.3:43364518-43364537 | MS.gene052656:intron | 35.0% | |
| GAAAAACCTAATACTCGATG+TGG | - | chr3.3:43364569-43364588 | MS.gene052656:intron | 35.0% | |
| GAATATGGAAGTGATGAAGA+AGG | - | chr3.3:43364188-43364207 | MS.gene052656:CDS | 35.0% | |
| GATTATACAGATCTTTCCTC+CGG | + | chr3.3:43364838-43364857 | None:intergenic | 35.0% | |
| GCAATTCTCCTAACAAATAG+AGG | + | chr3.3:43364365-43364384 | None:intergenic | 35.0% | |
| GCAGGAGGATATGATAAAAT+TGG | - | chr3.3:43364809-43364828 | MS.gene052656:intron | 35.0% | |
| GGAAAAAAGAGGATTAAGTG+AGG | - | chr3.3:43364529-43364548 | MS.gene052656:intron | 35.0% | |
| GTGTGCTTGAAAAACATCAT+GGG | + | chr3.3:43364941-43364960 | None:intergenic | 35.0% | |
| TAAACATTATGACACAACGC+TGG | - | chr3.3:43364618-43364637 | MS.gene052656:intron | 35.0% | |
| TAGATGGACAAAAAATGCCA+AGG | - | chr3.3:43366014-43366033 | MS.gene052656:CDS | 35.0% | |
| TCTGCATTAAGTTATCTTCG+TGG | - | chr3.3:43364899-43364918 | MS.gene052656:intron | 35.0% | |
| TCTTCTGCAATGATTGTATC+TGG | - | chr3.3:43365784-43365803 | MS.gene052656:CDS | 35.0% | |
| TGGTGATTTAGCTATGAAGA+AGG | - | chr3.3:43365240-43365259 | MS.gene052656:intron | 35.0% | |
| TGTCCATCTACTCATTACAA+GGG | + | chr3.3:43366004-43366023 | None:intergenic | 35.0% | |
| TGTCTGAATCTGTCATTACA+CGG | + | chr3.3:43364718-43364737 | None:intergenic | 35.0% | |
| TGTTCATTCTCGTTACAACT+TGG | - | chr3.3:43365579-43365598 | MS.gene052656:intron | 35.0% | |
| TTCGCATTTGATGCAACATA+TGG | - | chr3.3:43365043-43365062 | MS.gene052656:intron | 35.0% | |
| TTGCCATAGACTAGGATATA+GGG | - | chr3.3:43364508-43364527 | MS.gene052656:intron | 35.0% | |
| TTGTCCATCTACTCATTACA+AGG | + | chr3.3:43366005-43366024 | None:intergenic | 35.0% | |
| TTTCCCTATATCCTAGTCTA+TGG | + | chr3.3:43364514-43364533 | None:intergenic | 35.0% | |
| TTTGATGAAGGGGTCAATTA+TGG | - | chr3.3:43364110-43364129 | MS.gene052656:CDS | 35.0% | |
| TTTGCCATAGACTAGGATAT+AGG | - | chr3.3:43364507-43364526 | MS.gene052656:intron | 35.0% | |
| TTTGTTAGGAGAATTGCGTT+TGG | - | chr3.3:43364368-43364387 | MS.gene052656:intron | 35.0% | |
| ! | ATATACGAAGAGAAAGGCAT+GGG | - | chr3.3:43365471-43365490 | MS.gene052656:intron | 35.0% |
| ! | ATGAGATTGGAGAATTTTCC+AGG | - | chr3.3:43365389-43365408 | MS.gene052656:intron | 35.0% |
| ! | ATGATAAAATTGGTTTCCGG+AGG | - | chr3.3:43364819-43364838 | MS.gene052656:intron | 35.0% |
| ! | TGAGCATATCATTGCAGTTT+TGG | - | chr3.3:43365948-43365967 | MS.gene052656:CDS | 35.0% |
| ! | TTTTTCCATCACACCAAAAC+AGG | + | chr3.3:43364991-43365010 | None:intergenic | 35.0% |
| !! | GCTGAAACTGTTGATTCATT+TGG | - | chr3.3:43365418-43365437 | MS.gene052656:intron | 35.0% |
| !!! | TTTTCAAGTGTGCTTGTCAA+AGG | - | chr3.3:43365902-43365921 | MS.gene052656:CDS | 35.0% |
| AAATCCATTCGCTCTTCCAT+AGG | + | chr3.3:43364426-43364445 | None:intergenic | 40.0% | |
| AAATCCTATGGAAGAGCGAA+TGG | - | chr3.3:43364419-43364438 | MS.gene052656:intron | 40.0% | |
| AATGCTGACATTGAAGACGA+TGG | - | chr3.3:43364218-43364237 | MS.gene052656:CDS | 40.0% | |
| ACTGCAATGATATGCTCACA+TGG | + | chr3.3:43365946-43365965 | None:intergenic | 40.0% | |
| AGAACTACATCAAGATGCGA+GGG | - | chr3.3:43365532-43365551 | MS.gene052656:intron | 40.0% | |
| AGATGGAAGTGATGAAGAAG+GGG | - | chr3.3:43364145-43364164 | MS.gene052656:CDS | 40.0% | |
| ATGCTTCGTATCTTGTAGCA+TGG | + | chr3.3:43366089-43366108 | None:intergenic | 40.0% | |
| ATGTTGGGTGACTATGAGAT+TGG | - | chr3.3:43365376-43365395 | MS.gene052656:intron | 40.0% | |
| CAAAGAGCAAATGGACATTG+CGG | - | chr3.3:43366164-43366183 | MS.gene052656:CDS | 40.0% | |
| CACCAGCAAACACAACTAAA+TGG | + | chr3.3:43365087-43365106 | None:intergenic | 40.0% | |
| CACTATCAACTTGGACATAG+TGG | + | chr3.3:43364304-43364323 | None:intergenic | 40.0% | |
| CACTTGAAAATGTCTTCTGC+AGG | + | chr3.3:43365892-43365911 | None:intergenic | 40.0% | |
| CATATACGAAGAGAAAGGCA+TGG | - | chr3.3:43365470-43365489 | MS.gene052656:intron | 40.0% | |
| CATTGGACCTAAGTGGTTTA+GGG | - | chr3.3:43364339-43364358 | MS.gene052656:CDS | 40.0% | |
| CGAATACGTCACCATAAACT+TGG | + | chr3.3:43365027-43365046 | None:intergenic | 40.0% | |
| CGATGACTACAAAGAGCAAA+TGG | - | chr3.3:43366155-43366174 | MS.gene052656:CDS | 40.0% | |
| CTAAATTGACCCACAAATGC+AGG | + | chr3.3:43365349-43365368 | None:intergenic | 40.0% | |
| CTACTCATTACAAGGGATTG+AGG | + | chr3.3:43365997-43366016 | None:intergenic | 40.0% | |
| CTGGATCGAAAGAAACATGT+GGG | - | chr3.3:43365803-43365822 | MS.gene052656:CDS | 40.0% | |
| CTTATCATAGACTGTGTGTG+TGG | - | chr3.3:43365287-43365306 | MS.gene052656:intron | 40.0% | |
| GAAGATGGAAGTGATGAAGA+AGG | - | chr3.3:43364143-43364162 | MS.gene052656:CDS | 40.0% | |
| GAGAATCTGAAGAAGAGGTT+TGG | - | chr3.3:43363970-43363989 | MS.gene052656:CDS | 40.0% | |
| GCTTCATTTGCAAATCAAGC+AGG | - | chr3.3:43364791-43364810 | MS.gene052656:intron | 40.0% | |
| GTATTAAGTAGCAGCTCAAG+TGG | - | chr3.3:43366039-43366058 | MS.gene052656:CDS | 40.0% | |
| GTGGATGTCAAGCTATGTTT+CGG | - | chr3.3:43364588-43364607 | MS.gene052656:intron | 40.0% | |
| TATGGTGACATGGAAGAAGA+TGG | - | chr3.3:43364128-43364147 | MS.gene052656:CDS | 40.0% | |
| TCATTTGCAAATCAAGCAGG+AGG | - | chr3.3:43364794-43364813 | MS.gene052656:intron | 40.0% | |
| TCTGGATCGAAAGAAACATG+TGG | - | chr3.3:43365802-43365821 | MS.gene052656:CDS | 40.0% | |
| TCTGTCAGAACTAAAGGTAG+AGG | - | chr3.3:43366285-43366304 | MS.gene052656:CDS | 40.0% | |
| TGACATCCACATCGAGTATT+AGG | + | chr3.3:43364578-43364597 | None:intergenic | 40.0% | |
| TGGATGTCAAGCTATGTTTC+GGG | - | chr3.3:43364589-43364608 | MS.gene052656:intron | 40.0% | |
| TGTCAAAGGATGGAGTCATT+TGG | - | chr3.3:43365916-43365935 | MS.gene052656:CDS | 40.0% | |
| TTGAAAGCCGAACAAATGAG+AGG | - | chr3.3:43366198-43366217 | MS.gene052656:CDS | 40.0% | |
| TTGGATTGCACGACAACAAT+TGG | - | chr3.3:43365437-43365456 | MS.gene052656:intron | 40.0% | |
| ! | AAGTGGTCATCCGACATTTT+GGG | - | chr3.3:43366056-43366075 | MS.gene052656:CDS | 40.0% |
| ! | GTAGACTACAACACCTGTTT+TGG | - | chr3.3:43364975-43364994 | MS.gene052656:intron | 40.0% |
| ! | GTTTAGGGCCTCTATTTGTT+AGG | - | chr3.3:43364354-43364373 | MS.gene052656:CDS | 40.0% |
| ! | TGCCATTTAGTTGTGTTTGC+TGG | - | chr3.3:43365082-43365101 | MS.gene052656:intron | 40.0% |
| ! | TGGAGAATTTTCCAGGAAGT+GGG | - | chr3.3:43365396-43365415 | MS.gene052656:intron | 40.0% |
| ! | TTGGAGAATTTTCCAGGAAG+TGG | - | chr3.3:43365395-43365414 | MS.gene052656:intron | 40.0% |
| !! | AAGCACACTACTGATTCTAC+AGG | - | chr3.3:43364953-43364972 | MS.gene052656:intron | 40.0% |
| !! | AAGCATTGATGTCTAGATGG+GGG | - | chr3.3:43366103-43366122 | MS.gene052656:CDS | 40.0% |
| !! | AATGGATTTTCAGTCCGCAA+AGG | - | chr3.3:43364437-43364456 | MS.gene052656:intron | 40.0% |
| !! | ACGAAGCATTGATGTCTAGA+TGG | - | chr3.3:43366100-43366119 | MS.gene052656:CDS | 40.0% |
| !! | ATGCTGCAGTTTTTGATGAC+CGG | - | chr3.3:43364642-43364661 | MS.gene052656:intron | 40.0% |
| !! | CGAAGCATTGATGTCTAGAT+GGG | - | chr3.3:43366101-43366120 | MS.gene052656:CDS | 40.0% |
| !! | CGGTTTTTGGAAGCAATGTT+TGG | - | chr3.3:43365190-43365209 | MS.gene052656:intron | 40.0% |
| !! | GAAGCATTGATGTCTAGATG+GGG | - | chr3.3:43366102-43366121 | MS.gene052656:CDS | 40.0% |
| !! | TGTCCAAGTTGATAGTGTTG+AGG | - | chr3.3:43364307-43364326 | MS.gene052656:CDS | 40.0% |
| !! | TTCTGAAGCCTGCAAAAAAC+TGG | + | chr3.3:43365516-43365535 | None:intergenic | 40.0% |
| AAATGCAGGATCGCCTATGT+TGG | + | chr3.3:43365335-43365354 | None:intergenic | 45.0% | |
| ACCGCATGAAGTTGAGACAA+CGG | + | chr3.3:43365627-43365646 | None:intergenic | 45.0% | |
| ACCGTTGTCTCAACTTCATG+CGG | - | chr3.3:43365623-43365642 | MS.gene052656:intron | 45.0% | |
| ACGATGGAAGTGATGCAGAA+GGG | - | chr3.3:43364234-43364253 | MS.gene052656:CDS | 45.0% | |
| AGAACTAAAGGTAGAGGTGG+TGG | - | chr3.3:43366291-43366310 | MS.gene052656:CDS | 45.0% | |
| AGGGGTCAATTATGGTGACA+TGG | - | chr3.3:43364118-43364137 | MS.gene052656:CDS | 45.0% | |
| ATAAGTACATGAGGCCAGAC+CGG | - | chr3.3:43365845-43365864 | MS.gene052656:CDS | 45.0% | |
| ATACTAGTGCATGGTTGTGC+CGG | + | chr3.3:43364664-43364683 | None:intergenic | 45.0% | |
| ATAGAGGCCCTAAACCACTT+AGG | + | chr3.3:43364349-43364368 | None:intergenic | 45.0% | |
| ATAGGCGATCCTGCATTTGT+GGG | - | chr3.3:43365337-43365356 | MS.gene052656:intron | 45.0% | |
| ATGGGCAACAGCACATATAC+GGG | - | chr3.3:43365489-43365508 | MS.gene052656:intron | 45.0% | |
| ATTGGGCCTGAAAAAGGTGA+TGG | - | chr3.3:43363921-43363940 | MS.gene052656:CDS | 45.0% | |
| CAACTTCATGCGGTATAGAG+AGG | - | chr3.3:43365633-43365652 | MS.gene052656:intron | 45.0% | |
| CAAGTGTGCTTGTCAAAGGA+TGG | - | chr3.3:43365906-43365925 | MS.gene052656:CDS | 45.0% | |
| CAGAACTACATCAAGATGCG+AGG | - | chr3.3:43365531-43365550 | MS.gene052656:intron | 45.0% | |
| CATGGGCAACAGCACATATA+CGG | - | chr3.3:43365488-43365507 | MS.gene052656:intron | 45.0% | |
| CCAGCTTCTGTCAGAACTAA+AGG | - | chr3.3:43366279-43366298 | MS.gene052656:CDS | 45.0% | |
| CGTCCTCAACACTATCAACT+TGG | + | chr3.3:43364313-43364332 | None:intergenic | 45.0% | |
| CTAATGTCTACCCCTTCTTC+AGG | + | chr3.3:43363951-43363970 | None:intergenic | 45.0% | |
| CTAGTATCGCAGGAACATTG+TGG | - | chr3.3:43364677-43364696 | MS.gene052656:intron | 45.0% | |
| CTTATGTCTGGGTGCTTTCA+CGG | - | chr3.3:43365170-43365189 | MS.gene052656:intron | 45.0% | |
| GAACTACATCAAGATGCGAG+GGG | - | chr3.3:43365533-43365552 | MS.gene052656:intron | 45.0% | |
| GACAAACCTTGAAGATGACG+CGG | - | chr3.3:43366236-43366255 | MS.gene052656:CDS | 45.0% | |
| GCATTGGACCTAAGTGGTTT+AGG | - | chr3.3:43364338-43364357 | MS.gene052656:CDS | 45.0% | |
| GGGAATCTTGTAGAGAGAAC+TGG | + | chr3.3:43365691-43365710 | None:intergenic | 45.0% | |
| GTCAGAACTAAAGGTAGAGG+TGG | - | chr3.3:43366288-43366307 | MS.gene052656:CDS | 45.0% | |
| GTCATCTTCAAGGTTTGTCG+TGG | + | chr3.3:43366235-43366254 | None:intergenic | 45.0% | |
| GTTGAGTTTGACGAAGATGG+AGG | - | chr3.3:43364059-43364078 | MS.gene052656:CDS | 45.0% | |
| TAAATGATACACGCCACTCC+CGG | + | chr3.3:43365867-43365886 | None:intergenic | 45.0% | |
| TGATGGAAGTCCTGAAGAAG+GGG | - | chr3.3:43363938-43363957 | MS.gene052656:CDS | 45.0% | |
| TGGTGTGAGTCCCAAAATGT+CGG | + | chr3.3:43366069-43366088 | None:intergenic | 45.0% | |
| TTGACGAAGATGGAGGTAGA+GGG | - | chr3.3:43364066-43364085 | MS.gene052656:CDS | 45.0% | |
| TTTGACGAAGATGGAGGTAG+AGG | - | chr3.3:43364065-43364084 | MS.gene052656:CDS | 45.0% | |
| ! | CAAGTGGTCATCCGACATTT+TGG | - | chr3.3:43366055-43366074 | MS.gene052656:CDS | 45.0% |
| ! | GCTGCTACTTAATACGTCCT+TGG | + | chr3.3:43366034-43366053 | None:intergenic | 45.0% |
| ! | GGACTTCCATCACCTTTTTC+AGG | + | chr3.3:43363930-43363949 | None:intergenic | 45.0% |
| ! | GTGATGGAAGTCCTGAAGAA+GGG | - | chr3.3:43363937-43363956 | MS.gene052656:CDS | 45.0% |
| ! | TGATAGTGTTGAGGACGTTG+TGG | - | chr3.3:43364316-43364335 | MS.gene052656:CDS | 45.0% |
| !! | CCTTTAGTTCTGACAGAAGC+TGG | + | chr3.3:43366282-43366301 | None:intergenic | 45.0% |
| !! | TGAAGAAGAGGTTTGGGTTG+AGG | - | chr3.3:43363977-43363996 | MS.gene052656:CDS | 45.0% |
| !!! | CAACACCTGTTTTGGTGTGA+TGG | - | chr3.3:43364983-43365002 | MS.gene052656:intron | 45.0% |
| AAACCTTGAAGATGACGCGG+TGG | - | chr3.3:43366239-43366258 | MS.gene052656:CDS | 50.0% | |
| AACAGTTTCAGCCCACTTCC+TGG | + | chr3.3:43365410-43365429 | None:intergenic | 50.0% | |
| AGGGGTAGACTATGGTGACA+TGG | - | chr3.3:43364253-43364272 | MS.gene052656:CDS | 50.0% | |
| AGGGGTTGCATTCAGAGATG+GGG | - | chr3.3:43365551-43365570 | MS.gene052656:intron | 50.0% | |
| CAACCATGCACTAGTATCGC+AGG | - | chr3.3:43364667-43364686 | MS.gene052656:intron | 50.0% | |
| CACCAGAGAGCTCAAGCTTA+GGG | + | chr3.3:43365711-43365730 | None:intergenic | 50.0% | |
| CATAGGCGATCCTGCATTTG+TGG | - | chr3.3:43365336-43365355 | MS.gene052656:intron | 50.0% | |
| CCAACTGCTGTGATCACTGA+TGG | - | chr3.3:43365220-43365239 | MS.gene052656:intron | 50.0% | |
| CCATCAGTGATCACAGCAGT+TGG | + | chr3.3:43365223-43365242 | None:intergenic | 50.0% | |
| CGATGGAAGTGATGCAGAAG+GGG | - | chr3.3:43364235-43364254 | MS.gene052656:CDS | 50.0% | |
| CGCAATGCAACGTCCAACAT+AGG | - | chr3.3:43365319-43365338 | MS.gene052656:intron | 50.0% | |
| GACGATGGAAGTGATGCAGA+AGG | - | chr3.3:43364233-43364252 | MS.gene052656:CDS | 50.0% | |
| GAGGGGTTGCATTCAGAGAT+GGG | - | chr3.3:43365550-43365569 | MS.gene052656:intron | 50.0% | |
| GATGCAGAAGGGGTAGACTA+TGG | - | chr3.3:43364245-43364264 | MS.gene052656:CDS | 50.0% | |
| GGGGGGATACAATGGTAACA+TGG | - | chr3.3:43364001-43364020 | MS.gene052656:CDS | 50.0% | |
| GTTCCTGCGATACTAGTGCA+TGG | + | chr3.3:43364673-43364692 | None:intergenic | 50.0% | |
| TAAGTACATGAGGCCAGACC+GGG | - | chr3.3:43365846-43365865 | MS.gene052656:CDS | 50.0% | |
| TGAGGCGAATAGACAGCGTA+AGG | - | chr3.3:43364547-43364566 | MS.gene052656:intron | 50.0% | |
| TGGGCAACAGCACATATACG+GGG | - | chr3.3:43365490-43365509 | MS.gene052656:intron | 50.0% | |
| TGTTGAGGACGTTGTGGCAT+TGG | - | chr3.3:43364322-43364341 | MS.gene052656:CDS | 50.0% | |
| TTCCCTAAGCTTGAGCTCTC+TGG | - | chr3.3:43365706-43365725 | MS.gene052656:CDS | 50.0% | |
| ! | AAAGGTAGAGGTGGTGGTGT+TGG | - | chr3.3:43366297-43366316 | MS.gene052656:CDS | 50.0% |
| ! | CTGGGTGCTTTCACGGTTTT+TGG | - | chr3.3:43365177-43365196 | MS.gene052656:intron | 50.0% |
| ! | GTTGTGGCATTGGACCTAAG+TGG | - | chr3.3:43364332-43364351 | MS.gene052656:CDS | 50.0% |
| !! | AAGAGGTTTGGGTTGAGGAG+GGG | - | chr3.3:43363982-43364001 | MS.gene052656:CDS | 50.0% |
| !! | AGAAGAGGTTTGGGTTGAGG+AGG | - | chr3.3:43363980-43363999 | MS.gene052656:CDS | 50.0% |
| !! | GAAGAGGTTTGGGTTGAGGA+GGG | - | chr3.3:43363981-43364000 | MS.gene052656:CDS | 50.0% |
| !! | GGTGATGGAAGTCCTGAAGA+AGG | - | chr3.3:43363936-43363955 | MS.gene052656:CDS | 50.0% |
| !!! | ATACGGGGCCAGTTTTTTGC+AGG | - | chr3.3:43365505-43365524 | MS.gene052656:intron | 50.0% |
| CGAGGGGTTGCATTCAGAGA+TGG | - | chr3.3:43365549-43365568 | MS.gene052656:intron | 55.0% | |
| GATGGAGGTAGAGGGCAATC+CGG | - | chr3.3:43364074-43364093 | MS.gene052656:CDS | 55.0% | |
| GCACCAGAGAGCTCAAGCTT+AGG | + | chr3.3:43365712-43365731 | None:intergenic | 55.0% | |
| GCTTGAGCTCTCTGGTGCAA+AGG | - | chr3.3:43365714-43365733 | MS.gene052656:CDS | 55.0% | |
| GTTGAGGAGGGGGGATACAA+TGG | - | chr3.3:43363993-43364012 | MS.gene052656:CDS | 55.0% | |
| !! | AGAGGTTTGGGTTGAGGAGG+GGG | - | chr3.3:43363983-43364002 | MS.gene052656:CDS | 55.0% |
| CGTCCACCGCGTCATCTTCA+AGG | + | chr3.3:43366245-43366264 | None:intergenic | 60.0% | |
| !! | GAGGTTTGGGTTGAGGAGGG+GGG | - | chr3.3:43363984-43364003 | MS.gene052656:CDS | 60.0% |
| ACATGAGGCCAGACCGGGAG+TGG | - | chr3.3:43365851-43365870 | MS.gene052656:CDS | 65.0% | |
| GATACACGCCACTCCCGGTC+TGG | + | chr3.3:43365862-43365881 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 43363888 | 43366332 | 43363888 | ID=MS.gene052656 |
| chr3.3 | mRNA | 43363888 | 43366332 | 43363888 | ID=MS.gene052656.t1;Parent=MS.gene052656 |
| chr3.3 | exon | 43365657 | 43366332 | 43365657 | ID=MS.gene052656.t1.exon1;Parent=MS.gene052656.t1 |
| chr3.3 | CDS | 43365657 | 43366332 | 43365657 | ID=cds.MS.gene052656.t1;Parent=MS.gene052656.t1 |
| chr3.3 | exon | 43363888 | 43364378 | 43363888 | ID=MS.gene052656.t1.exon2;Parent=MS.gene052656.t1 |
| chr3.3 | CDS | 43363888 | 43364378 | 43363888 | ID=cds.MS.gene052656.t1;Parent=MS.gene052656.t1 |
| Gene Sequence |
| Protein sequence |
