AlfalfaGEDB | MS.gene052658

M. sativa cultivar XinJiangDaYe / MS.gene052658

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052658.t1	AES98673.1	29.8	255	143	3	22	243	20	271	8.30E-21	110.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052658.t1	G7JZK4	29.8	255	143	3	22	243	20	271	6.0e-21	110.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene052658.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052658.t1	MTR_5g071410	30.469	256	142	3	21	243	19	271	1.32e-30	114
MS.gene052658.t1	MTR_3g082920	49.057	106	38	2	30	133	327	418	1.05e-20	90.5
MS.gene052658.t1	MTR_6g477950	49.412	85	42	1	156	240	61	144	2.44e-19	85.5
MS.gene052658.t1	MTR_7g117585	37.736	106	66	0	138	243	43	148	1.04e-18	80.1
MS.gene052658.t1	MTR_8g069780	41.250	80	47	0	161	240	76	155	9.92e-15	69.7
MS.gene052658.t1	MTR_2g012700	30.508	118	76	2	125	240	6	119	3.29e-13	64.7
MS.gene052658.t1	MTR_3g117130	42.683	82	47	0	159	240	197	278	3.88e-13	67.8
MS.gene052658.t1	MTR_2g062330	35.366	82	52	1	159	240	58	138	1.22e-12	63.9
MS.gene052658.t1	MTR_0010s0310	25.424	236	137	6	20	231	20	240	9.38e-12	63.5
MS.gene052658.t1	MTR_2g437520	39.759	83	47	1	161	240	121	203	9.74e-12	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 55 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCACGACTTCTGGT+AGG	0.588749	3.3:-43373953	MS.gene052658:CDS
AAACTGCAAAAGTATGATTA+TGG	0.310821	3.3:-43374035	MS.gene052658:CDS
AAACTTATCACTTCAAATAG+GGG	0.599416	3.3:-43373495	MS.gene052658:CDS
AAATTTCACGACTTCTGGTA+GGG	0.551367	3.3:-43373952	MS.gene052658:CDS
AACCTCCACAAAGAGACGAT+TGG	0.547571	3.3:+43373374	None:intergenic
AACTATCATTTATCCACAAC+AGG	0.425989	3.3:-43374216	MS.gene052658:intron
AAGGATAGTAGACTAAGGAA+AGG	0.649294	3.3:-43373429	MS.gene052658:CDS
ACAGGAGAGCATTACTTTGC+AGG	0.396717	3.3:-43373547	MS.gene052658:CDS
ACCTCCACAAAGAGACGATT+GGG	0.451863	3.3:+43373375	None:intergenic
ACCTGTGTACGAGTTAAGTT+TGG	0.331180	3.3:-43373990	MS.gene052658:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTATCATTTATCCACAAC+AGG	-	chr3.3:43373869-43373888	MS.gene052658:CDS	30.0%
AGAAATACTTAGGTGAAGAT+TGG	-	chr3.3:43374621-43374640	MS.gene052658:intron	30.0%
ATATCCCATGTTATGGAATT+CGG	-	chr3.3:43373705-43373724	MS.gene052658:intron	30.0%
CACATATCCTTATCAAGTTT+AGG	-	chr3.3:43373585-43373604	MS.gene052658:CDS	30.0%
CTAAACTTGATAAGGATATG+TGG	+	chr3.3:43373587-43373606	None:intergenic	30.0%
GCAAACTTATCACTTCAAAT+AGG	-	chr3.3:43374588-43374607	MS.gene052658:intron	30.0%
TAAGTTTGCACTCATATTCT+CGG	+	chr3.3:43374577-43374596	None:intergenic	30.0%
TCACCTAAGTATTTCTCATT+TGG	+	chr3.3:43374617-43374636	None:intergenic	30.0%
TGGATAAATGATAGTTTCGA+AGG	+	chr3.3:43373865-43373884	None:intergenic	30.0%
AAAATTTCACGACTTCTGGT+AGG	-	chr3.3:43374132-43374151	MS.gene052658:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	43373356	43374751	43373356	ID=MS.gene052658
chr3.3	mRNA	43373356	43374751	43373356	ID=MS.gene052658.t1;Parent=MS.gene052658
chr3.3	exon	43374732	43374751	43374732	ID=MS.gene052658.t1.exon1;Parent=MS.gene052658.t1
chr3.3	CDS	43374732	43374751	43374732	ID=cds.MS.gene052658.t1;Parent=MS.gene052658.t1
chr3.3	exon	43374217	43374283	43374217	ID=MS.gene052658.t1.exon2;Parent=MS.gene052658.t1
chr3.3	CDS	43374217	43374283	43374217	ID=cds.MS.gene052658.t1;Parent=MS.gene052658.t1
chr3.3	exon	43373710	43374102	43373710	ID=MS.gene052658.t1.exon3;Parent=MS.gene052658.t1
chr3.3	CDS	43373710	43374102	43373710	ID=cds.MS.gene052658.t1;Parent=MS.gene052658.t1
chr3.3	exon	43373356	43373610	43373356	ID=MS.gene052658.t1.exon4;Parent=MS.gene052658.t1
chr3.3	CDS	43373356	43373610	43373356	ID=cds.MS.gene052658.t1;Parent=MS.gene052658.t1

Gene Sequence

>MS.gene052658

ATGGAATCAACCGGGAAAAGGTAATTTTACTCTCTTTTCTTTCATTTTGTCTCTTTCGTCTCTAAGATTTCCATCGTAAATATAGTAATAGTGGTCCCCTATAGTCTTGGCTAAGGTGGCTAAAACATAGAAGGTAATATGGGTTCTTTTCTAGGGTTTGCAAGATATTTTGCATAAATTTGAAGTTAATATGAGTTTTTTCTTCCAAATTTTTTTTGTTACTGAAAACCACATATCCTTATCAAGTTTAGGCTGACGGTTATAACATGCAATTTTGTAATGAGTGGAAATCAATTTTAGTGATATACATATTTATGATTTAACAGGTAGAAGCAATTAGTATTTTTACATATCCCATGTTATGGAATTCGGTGGAAACCATAGAAAGAATATAATAAAAACAGTTTTCTTATAAATATTTAGTTACATGATTTTTGTATGTAATTAACTACAATCAATTGTTTTTAGATTATGCAAAGCAACAAGCTACTATACCCTCGTGAATTCCTTCGAAACTATCATTTATCCACAACAGGTATTACAAAATATTGCTTGGTTGTTATGATATTCTTGTATAATGATATTTTATCAAATTTCGTATGGCCCCTGACTTATACATCTTATATGTGTGTTTTTTTTATCGTTGTAGTCAAAGATACAAGTATGTTCTGTATTCTTCTCATCTTACTTCAAGAAACTGCAAAAGTATGATTATGGATGGATTAGGGATCCAAATGGCACCTGTGTACGAGTTAAGTTTGGGAGAAATTTAAGCCAAAATTTCACGACTTCTGGTAGGGACGTCGCAGCTAAATTCAACTGGGAGAAACCAACACGTGTTAGACTTGAATATACTGGCGCTTTTAACAGGTTCAAGATGATGGTTTTGGTGGATGAAGTTGGAAGTTCAAGGGGAAATACAATCAAGGAAGAAGTTATTGATTCTGATTCTGAAGATGATTGTATAGAAATTGCTGATTATGATCATTTTGAGAGGAATGTCACATATGTCACAGCTAACAACAAGAGATGTCAAGTAATGGTATGTTCAACCAAATTAATATTATTTATGAACATTACAATTATTCATTTAACATTCATTATTTGCATACTAAAGCATGTGAGTTTATAATTTGTTTAGCACTTTCCCAATAAGATATCTATCAACTGCTTACCCGACACACAGGAGAGCATTACTTTGCAGGATGTGCATAATCTCCGAGAATATGAGTGCAAACTTATCACTTCAAATAGGGGTCCAAATGAGAAATACTTAGGTGAAGATTGGCCCAAGTTCGTGAAGGATAGTAGACTAAGGAAAGGTGATAAGTTGATATTTGATCTTTGTGCTCCTCCCAATCGTCTCTTTGTGGAGGTTGTCCGACGTCGTCGTTAG

Protein sequence

>MS.gene052658.t1

MESTGKRLCKATSYYTLVNSFETIIYPQQSKIQVCSVFFSSYFKKLQKYDYGWIRDPNGTCVRVKFGRNLSQNFTTSGRDVAAKFNWEKPTRVRLEYTGAFNRFKMMVLVDEVGSSRGNTIKEEVIDSDSEDDCIEIADYDHFERNVTYVTANNKRCQVMHFPNKISINCLPDTQESITLQDVHNLREYECKLITSNRGPNEKYLGEDWPKFVKDSRLRKGDKLIFDLCAPPNRLFVEVVRRRR