Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052658.t1 | AES98673.1 | 29.8 | 255 | 143 | 3 | 22 | 243 | 20 | 271 | 8.30E-21 | 110.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052658.t1 | G7JZK4 | 29.8 | 255 | 143 | 3 | 22 | 243 | 20 | 271 | 6.0e-21 | 110.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene052658.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052658.t1 | MTR_5g071410 | 30.469 | 256 | 142 | 3 | 21 | 243 | 19 | 271 | 1.32e-30 | 114 |
MS.gene052658.t1 | MTR_3g082920 | 49.057 | 106 | 38 | 2 | 30 | 133 | 327 | 418 | 1.05e-20 | 90.5 |
MS.gene052658.t1 | MTR_6g477950 | 49.412 | 85 | 42 | 1 | 156 | 240 | 61 | 144 | 2.44e-19 | 85.5 |
MS.gene052658.t1 | MTR_7g117585 | 37.736 | 106 | 66 | 0 | 138 | 243 | 43 | 148 | 1.04e-18 | 80.1 |
MS.gene052658.t1 | MTR_8g069780 | 41.250 | 80 | 47 | 0 | 161 | 240 | 76 | 155 | 9.92e-15 | 69.7 |
MS.gene052658.t1 | MTR_2g012700 | 30.508 | 118 | 76 | 2 | 125 | 240 | 6 | 119 | 3.29e-13 | 64.7 |
MS.gene052658.t1 | MTR_3g117130 | 42.683 | 82 | 47 | 0 | 159 | 240 | 197 | 278 | 3.88e-13 | 67.8 |
MS.gene052658.t1 | MTR_2g062330 | 35.366 | 82 | 52 | 1 | 159 | 240 | 58 | 138 | 1.22e-12 | 63.9 |
MS.gene052658.t1 | MTR_0010s0310 | 25.424 | 236 | 137 | 6 | 20 | 231 | 20 | 240 | 9.38e-12 | 63.5 |
MS.gene052658.t1 | MTR_2g437520 | 39.759 | 83 | 47 | 1 | 161 | 240 | 121 | 203 | 9.74e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 55 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCAGAAGTCGTGAAATTT+TGG | 0.193946 | 3.3:+43373955 | None:intergenic |
GCAAACTTATCACTTCAAAT+AGG | 0.238418 | 3.3:-43373497 | MS.gene052658:CDS |
AGCCAAAATTTCACGACTTC+TGG | 0.271151 | 3.3:-43373957 | MS.gene052658:CDS |
TCACCTAAGTATTTCTCATT+TGG | 0.308885 | 3.3:+43373471 | None:intergenic |
AAACTGCAAAAGTATGATTA+TGG | 0.310821 | 3.3:-43374035 | MS.gene052658:CDS |
CAAACTTATCACTTCAAATA+GGG | 0.313955 | 3.3:-43373496 | MS.gene052658:CDS |
ACCTGTGTACGAGTTAAGTT+TGG | 0.331180 | 3.3:-43373990 | MS.gene052658:CDS |
GCAGTTGATAGATATCTTAT+TGG | 0.337824 | 3.3:+43373581 | None:intergenic |
CAGGTTCAAGATGATGGTTT+TGG | 0.363392 | 3.3:-43373862 | MS.gene052658:CDS |
AGTATGATTATGGATGGATT+AGG | 0.381484 | 3.3:-43374025 | MS.gene052658:CDS |
CAGTTGATAGATATCTTATT+GGG | 0.382252 | 3.3:+43373582 | None:intergenic |
TCTACTATCCTTCACGAACT+TGG | 0.384344 | 3.3:+43373440 | None:intergenic |
CGCTTTCCAATGGAATCAAC+CGG | 0.384860 | 3.3:-43374738 | None:intergenic |
ACAGGAGAGCATTACTTTGC+AGG | 0.396717 | 3.3:-43373547 | MS.gene052658:CDS |
ACGTCGCAGCTAAATTCAAC+TGG | 0.409112 | 3.3:-43373929 | MS.gene052658:CDS |
ACTCGTACACAGGTGCCATT+TGG | 0.409607 | 3.3:+43373999 | None:intergenic |
TAAGTTTGCACTCATATTCT+CGG | 0.417716 | 3.3:+43373511 | None:intergenic |
AACTATCATTTATCCACAAC+AGG | 0.425989 | 3.3:-43374216 | MS.gene052658:intron |
GTATGATTATGGATGGATTA+GGG | 0.435600 | 3.3:-43374024 | MS.gene052658:CDS |
GGTTGTCCGACGTCGTCGTT+AGG | 0.436504 | 3.3:-43373355 | None:intergenic |
ACCTCCACAAAGAGACGATT+GGG | 0.451863 | 3.3:+43373375 | None:intergenic |
AGAAATACTTAGGTGAAGAT+TGG | 0.462766 | 3.3:-43373464 | MS.gene052658:CDS |
TCCTCCCAATCGTCTCTTTG+TGG | 0.465471 | 3.3:-43373379 | MS.gene052658:CDS |
GTAATGCTCTCCTGTGTGTC+GGG | 0.473972 | 3.3:+43373555 | None:intergenic |
CAATGGAATCAACCGGGAAA+AGG | 0.480353 | 3.3:-43374731 | MS.gene052658:intron |
TGGATGAAGTTGGAAGTTCA+AGG | 0.497813 | 3.3:-43373839 | MS.gene052658:CDS |
CGTGTTAGACTTGAATATAC+TGG | 0.498920 | 3.3:-43373894 | MS.gene052658:CDS |
CCTGTGTACGAGTTAAGTTT+GGG | 0.512909 | 3.3:-43373989 | MS.gene052658:CDS |
GGTCCAAATGAGAAATACTT+AGG | 0.515401 | 3.3:-43373474 | MS.gene052658:CDS |
TGCAAAAGTATGATTATGGA+TGG | 0.520237 | 3.3:-43374031 | MS.gene052658:CDS |
TGGATAAATGATAGTTTCGA+AGG | 0.529484 | 3.3:+43374223 | None:intergenic |
CTACTATCCTTCACGAACTT+GGG | 0.542504 | 3.3:+43373441 | None:intergenic |
AACCTCCACAAAGAGACGAT+TGG | 0.547571 | 3.3:+43373374 | None:intergenic |
TATTCAAGTCTAACACGTGT+TGG | 0.547805 | 3.3:+43373900 | None:intergenic |
AAATTTCACGACTTCTGGTA+GGG | 0.551367 | 3.3:-43373952 | MS.gene052658:CDS |
CAACAAGAGATGTCAAGTAA+TGG | 0.551729 | 3.3:-43373709 | MS.gene052658:intron |
TTCAAGGGGAAATACAATCA+AGG | 0.560197 | 3.3:-43373823 | MS.gene052658:CDS |
TCCCAATCGTCTCTTTGTGG+AGG | 0.560244 | 3.3:-43373376 | MS.gene052658:CDS |
GGATGAAGTTGGAAGTTCAA+GGG | 0.560255 | 3.3:-43373838 | MS.gene052658:CDS |
AGTAATGCTCTCCTGTGTGT+CGG | 0.561176 | 3.3:+43373554 | None:intergenic |
TCGTGAAGGATAGTAGACTA+AGG | 0.562838 | 3.3:-43373434 | MS.gene052658:CDS |
GGATGGATTAGGGATCCAAA+TGG | 0.577469 | 3.3:-43374014 | MS.gene052658:CDS |
CCCAAACTTAACTCGTACAC+AGG | 0.584015 | 3.3:+43373989 | None:intergenic |
AAAATTTCACGACTTCTGGT+AGG | 0.588749 | 3.3:-43373953 | MS.gene052658:CDS |
AAACTTATCACTTCAAATAG+GGG | 0.599416 | 3.3:-43373495 | MS.gene052658:CDS |
GATGAAGTTGGAAGTTCAAG+GGG | 0.628048 | 3.3:-43373837 | MS.gene052658:CDS |
CGTCGCAGCTAAATTCAACT+GGG | 0.629434 | 3.3:-43373928 | MS.gene052658:CDS |
AAGGATAGTAGACTAAGGAA+AGG | 0.649294 | 3.3:-43373429 | MS.gene052658:CDS |
CAACTGCTTACCCGACACAC+AGG | 0.661269 | 3.3:-43373565 | MS.gene052658:CDS |
TCCACAAAGAGACGATTGGG+AGG | 0.661851 | 3.3:+43373378 | None:intergenic |
GCTTTCCAATGGAATCAACC+GGG | 0.669471 | 3.3:-43374737 | None:intergenic |
TAATATCCTAACGACGACGT+CGG | 0.679159 | 3.3:+43373349 | None:intergenic |
AGATTGGCCCAAGTTCGTGA+AGG | 0.685876 | 3.3:-43373448 | MS.gene052658:CDS |
TAGTTTCGAAGGAATTCACG+AGG | 0.693574 | 3.3:+43374234 | None:intergenic |
AGTTTCGAAGGAATTCACGA+GGG | 0.715405 | 3.3:+43374235 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTCATAAATAATATTAATT+TGG | + | chr3.3:43374411-43374430 | None:intergenic | 10.0% |
!!! | TTTTTATTATATTCTTTCTA+TGG | + | chr3.3:43373737-43373756 | None:intergenic | 10.0% |
!! | ATACATATTTATGATTTAAC+AGG | - | chr3.3:43373660-43373679 | MS.gene052658:intron | 15.0% |
!! | TTTCAGTAACAAAAAAAATT+TGG | + | chr3.3:43373563-43373582 | None:intergenic | 15.0% |
!!! | ATATTTTATCAAATTTCGTA+TGG | - | chr3.3:43373936-43373955 | MS.gene052658:CDS | 15.0% |
!! | TAAAACATAGAAGGTAATAT+GGG | - | chr3.3:43373476-43373495 | MS.gene052658:CDS | 20.0% |
! | AAACTTATCACTTCAAATAG+GGG | - | chr3.3:43374590-43374609 | MS.gene052658:intron | 25.0% |
! | ACATATAAGATGTATAAGTC+AGG | + | chr3.3:43373964-43373983 | None:intergenic | 25.0% |
! | AGGTATTACAAAATATTGCT+TGG | - | chr3.3:43373889-43373908 | MS.gene052658:CDS | 25.0% |
! | ATATAAGATGTATAAGTCAG+GGG | + | chr3.3:43373962-43373981 | None:intergenic | 25.0% |
! | CAAACTTATCACTTCAAATA+GGG | - | chr3.3:43374589-43374608 | MS.gene052658:intron | 25.0% |
! | CACTATTACTATATTTACGA+TGG | + | chr3.3:43373429-43373448 | None:intergenic | 25.0% |
! | CATATAAGATGTATAAGTCA+GGG | + | chr3.3:43373963-43373982 | None:intergenic | 25.0% |
! | CATCGTAAATATAGTAATAG+TGG | - | chr3.3:43373427-43373446 | MS.gene052658:CDS | 25.0% |
! | CTAAAACATAGAAGGTAATA+TGG | - | chr3.3:43373475-43373494 | MS.gene052658:CDS | 25.0% |
!! | AAACTGCAAAAGTATGATTA+TGG | - | chr3.3:43374050-43374069 | MS.gene052658:CDS | 25.0% |
!! | ATATTTTGTAATACCTGTTG+TGG | + | chr3.3:43373885-43373904 | None:intergenic | 25.0% |
!! | TTTTTACATATCCCATGTTA+TGG | - | chr3.3:43373698-43373717 | MS.gene052658:intron | 25.0% |
!!! | CAGTTGATAGATATCTTATT+GGG | + | chr3.3:43374506-43374525 | None:intergenic | 25.0% |
AACTATCATTTATCCACAAC+AGG | - | chr3.3:43373869-43373888 | MS.gene052658:CDS | 30.0% | |
AGAAATACTTAGGTGAAGAT+TGG | - | chr3.3:43374621-43374640 | MS.gene052658:intron | 30.0% | |
ATATCCCATGTTATGGAATT+CGG | - | chr3.3:43373705-43373724 | MS.gene052658:intron | 30.0% | |
CACATATCCTTATCAAGTTT+AGG | - | chr3.3:43373585-43373604 | MS.gene052658:CDS | 30.0% | |
CTAAACTTGATAAGGATATG+TGG | + | chr3.3:43373587-43373606 | None:intergenic | 30.0% | |
GCAAACTTATCACTTCAAAT+AGG | - | chr3.3:43374588-43374607 | MS.gene052658:intron | 30.0% | |
TAAGTTTGCACTCATATTCT+CGG | + | chr3.3:43374577-43374596 | None:intergenic | 30.0% | |
TCACCTAAGTATTTCTCATT+TGG | + | chr3.3:43374617-43374636 | None:intergenic | 30.0% | |
TGGATAAATGATAGTTTCGA+AGG | + | chr3.3:43373865-43373884 | None:intergenic | 30.0% | |
! | ACATGCAATTTTGTAATGAG+TGG | - | chr3.3:43373620-43373639 | MS.gene052658:intron | 30.0% |
! | AGAGTAAAATTACCTTTTCC+CGG | + | chr3.3:43373369-43373388 | None:intergenic | 30.0% |
! | AGTATGATTATGGATGGATT+AGG | - | chr3.3:43374060-43374079 | MS.gene052658:CDS | 30.0% |
! | CTGATTATGATCATTTTGAG+AGG | - | chr3.3:43374330-43374349 | MS.gene052658:intron | 30.0% |
! | GTAATATGGGTTCTTTTCTA+GGG | - | chr3.3:43373489-43373508 | MS.gene052658:CDS | 30.0% |
! | TGCAAAAGTATGATTATGGA+TGG | - | chr3.3:43374054-43374073 | MS.gene052658:CDS | 30.0% |
! | TTTTAACAGGTTCAAGATGA+TGG | - | chr3.3:43374217-43374236 | MS.gene052658:CDS | 30.0% |
!! | GCAGTTGATAGATATCTTAT+TGG | + | chr3.3:43374507-43374526 | None:intergenic | 30.0% |
!! | GTATGATTATGGATGGATTA+GGG | - | chr3.3:43374061-43374080 | MS.gene052658:CDS | 30.0% |
AAAATTTCACGACTTCTGGT+AGG | - | chr3.3:43374132-43374151 | MS.gene052658:intron | 35.0% | |
AAATTTCACGACTTCTGGTA+GGG | - | chr3.3:43374133-43374152 | MS.gene052658:intron | 35.0% | |
AAGGATAGTAGACTAAGGAA+AGG | - | chr3.3:43374656-43374675 | MS.gene052658:intron | 35.0% | |
CAACAAGAGATGTCAAGTAA+TGG | - | chr3.3:43374376-43374395 | MS.gene052658:intron | 35.0% | |
CGTGTTAGACTTGAATATAC+TGG | - | chr3.3:43374191-43374210 | MS.gene052658:intron | 35.0% | |
GGTCCAAATGAGAAATACTT+AGG | - | chr3.3:43374611-43374630 | MS.gene052658:intron | 35.0% | |
TAAGGTGGCTAAAACATAGA+AGG | - | chr3.3:43373467-43373486 | MS.gene052658:CDS | 35.0% | |
TATTCAAGTCTAACACGTGT+TGG | + | chr3.3:43374188-43374207 | None:intergenic | 35.0% | |
TTCAAGGGGAAATACAATCA+AGG | - | chr3.3:43374262-43374281 | MS.gene052658:CDS | 35.0% | |
! | AATATACTGGCGCTTTTAAC+AGG | - | chr3.3:43374204-43374223 | MS.gene052658:intron | 35.0% |
! | GGTAATATGGGTTCTTTTCT+AGG | - | chr3.3:43373488-43373507 | MS.gene052658:CDS | 35.0% |
! | TACCAGAAGTCGTGAAATTT+TGG | + | chr3.3:43374133-43374152 | None:intergenic | 35.0% |
ACCTGTGTACGAGTTAAGTT+TGG | - | chr3.3:43374095-43374114 | MS.gene052658:intron | 40.0% | |
AGCCAAAATTTCACGACTTC+TGG | - | chr3.3:43374128-43374147 | MS.gene052658:intron | 40.0% | |
AGTTTCGAAGGAATTCACGA+GGG | + | chr3.3:43373853-43373872 | None:intergenic | 40.0% | |
CCTGTGTACGAGTTAAGTTT+GGG | - | chr3.3:43374096-43374115 | MS.gene052658:intron | 40.0% | |
CCTTATCAAGTTTAGGCTGA+CGG | - | chr3.3:43373592-43373611 | MS.gene052658:intron | 40.0% | |
CTACTATCCTTCACGAACTT+GGG | + | chr3.3:43374647-43374666 | None:intergenic | 40.0% | |
GATGAAGTTGGAAGTTCAAG+GGG | - | chr3.3:43374248-43374267 | MS.gene052658:CDS | 40.0% | |
GGATGAAGTTGGAAGTTCAA+GGG | - | chr3.3:43374247-43374266 | MS.gene052658:CDS | 40.0% | |
TAGTTTCGAAGGAATTCACG+AGG | + | chr3.3:43373854-43373873 | None:intergenic | 40.0% | |
TCCACCGAATTCCATAACAT+GGG | + | chr3.3:43373712-43373731 | None:intergenic | 40.0% | |
TCGTGAAGGATAGTAGACTA+AGG | - | chr3.3:43374651-43374670 | MS.gene052658:intron | 40.0% | |
TCTACTATCCTTCACGAACT+TGG | + | chr3.3:43374648-43374667 | None:intergenic | 40.0% | |
TGGATGAAGTTGGAAGTTCA+AGG | - | chr3.3:43374246-43374265 | MS.gene052658:CDS | 40.0% | |
TTCCACCGAATTCCATAACA+TGG | + | chr3.3:43373713-43373732 | None:intergenic | 40.0% | |
!! | CAGGTTCAAGATGATGGTTT+TGG | - | chr3.3:43374223-43374242 | MS.gene052658:CDS | 40.0% |
!!! | ATGGTTTTGGTGGATGAAGT+TGG | - | chr3.3:43374236-43374255 | MS.gene052658:CDS | 40.0% |
!!! | GTTCAAGATGATGGTTTTGG+TGG | - | chr3.3:43374226-43374245 | MS.gene052658:CDS | 40.0% |
AACCTCCACAAAGAGACGAT+TGG | + | chr3.3:43374714-43374733 | None:intergenic | 45.0% | |
ACCTCCACAAAGAGACGATT+GGG | + | chr3.3:43374713-43374732 | None:intergenic | 45.0% | |
ACGTCGCAGCTAAATTCAAC+TGG | - | chr3.3:43374156-43374175 | MS.gene052658:intron | 45.0% | |
AGTAATGCTCTCCTGTGTGT+CGG | + | chr3.3:43374534-43374553 | None:intergenic | 45.0% | |
ATAGTGGTCCCCTATAGTCT+TGG | - | chr3.3:43373443-43373462 | MS.gene052658:CDS | 45.0% | |
CACCTTAGCCAAGACTATAG+GGG | + | chr3.3:43373454-43373473 | None:intergenic | 45.0% | |
CCACCTTAGCCAAGACTATA+GGG | + | chr3.3:43373455-43373474 | None:intergenic | 45.0% | |
CCCAAACTTAACTCGTACAC+AGG | + | chr3.3:43374099-43374118 | None:intergenic | 45.0% | |
CCGTCAGCCTAAACTTGATA+AGG | + | chr3.3:43373595-43373614 | None:intergenic | 45.0% | |
CGTCGCAGCTAAATTCAACT+GGG | - | chr3.3:43374157-43374176 | MS.gene052658:intron | 45.0% | |
TCCCATGTTATGGAATTCGG+TGG | - | chr3.3:43373708-43373727 | MS.gene052658:intron | 45.0% | |
!! | ACAGGAGAGCATTACTTTGC+AGG | - | chr3.3:43374538-43374557 | MS.gene052658:intron | 45.0% |
!! | GGATGGATTAGGGATCCAAA+TGG | - | chr3.3:43374071-43374090 | MS.gene052658:CDS | 45.0% |
GCCACCTTAGCCAAGACTAT+AGG | + | chr3.3:43373456-43373475 | None:intergenic | 50.0% | |
GTAATGCTCTCCTGTGTGTC+GGG | + | chr3.3:43374533-43374552 | None:intergenic | 50.0% | |
TCCACAAAGAGACGATTGGG+AGG | + | chr3.3:43374710-43374729 | None:intergenic | 50.0% | |
TCCCAATCGTCTCTTTGTGG+AGG | - | chr3.3:43374709-43374728 | MS.gene052658:intron | 50.0% | |
TCCTCCCAATCGTCTCTTTG+TGG | - | chr3.3:43374706-43374725 | MS.gene052658:intron | 50.0% | |
! | AGATTGGCCCAAGTTCGTGA+AGG | - | chr3.3:43374637-43374656 | MS.gene052658:intron | 50.0% |
! | CCCTATAGTCTTGGCTAAGG+TGG | - | chr3.3:43373452-43373471 | MS.gene052658:CDS | 50.0% |
! | GTCCCCTATAGTCTTGGCTA+AGG | - | chr3.3:43373449-43373468 | MS.gene052658:CDS | 50.0% |
!! | ACTCGTACACAGGTGCCATT+TGG | + | chr3.3:43374089-43374108 | None:intergenic | 50.0% |
CAACTGCTTACCCGACACAC+AGG | - | chr3.3:43374520-43374539 | MS.gene052658:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 43373356 | 43374751 | 43373356 | ID=MS.gene052658 |
chr3.3 | mRNA | 43373356 | 43374751 | 43373356 | ID=MS.gene052658.t1;Parent=MS.gene052658 |
chr3.3 | exon | 43374732 | 43374751 | 43374732 | ID=MS.gene052658.t1.exon1;Parent=MS.gene052658.t1 |
chr3.3 | CDS | 43374732 | 43374751 | 43374732 | ID=cds.MS.gene052658.t1;Parent=MS.gene052658.t1 |
chr3.3 | exon | 43374217 | 43374283 | 43374217 | ID=MS.gene052658.t1.exon2;Parent=MS.gene052658.t1 |
chr3.3 | CDS | 43374217 | 43374283 | 43374217 | ID=cds.MS.gene052658.t1;Parent=MS.gene052658.t1 |
chr3.3 | exon | 43373710 | 43374102 | 43373710 | ID=MS.gene052658.t1.exon3;Parent=MS.gene052658.t1 |
chr3.3 | CDS | 43373710 | 43374102 | 43373710 | ID=cds.MS.gene052658.t1;Parent=MS.gene052658.t1 |
chr3.3 | exon | 43373356 | 43373610 | 43373356 | ID=MS.gene052658.t1.exon4;Parent=MS.gene052658.t1 |
chr3.3 | CDS | 43373356 | 43373610 | 43373356 | ID=cds.MS.gene052658.t1;Parent=MS.gene052658.t1 |
Gene Sequence |
Protein sequence |