Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052659.t1 | GAU22574.1 | 53.1 | 162 | 74 | 2 | 228 | 388 | 568 | 728 | 1.10E-38 | 171 |
| MS.gene052659.t1 | GAU22574.1 | 53.4 | 88 | 41 | 0 | 138 | 225 | 52 | 139 | 6.50E-20 | 108.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052659.t1 | A0A2Z6LT40 | 53.1 | 162 | 74 | 2 | 228 | 388 | 568 | 728 | 7.7e-39 | 171.0 |
| MS.gene052659.t1 | A0A2Z6LT40 | 53.4 | 88 | 41 | 0 | 138 | 225 | 52 | 139 | 4.7e-20 | 108.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052659.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052659.t1 | MTR_1g070355 | 40.972 | 144 | 75 | 3 | 83 | 225 | 4 | 138 | 7.02e-24 | 103 |
| MS.gene052659.t1 | MTR_3g448650 | 31.034 | 116 | 74 | 2 | 102 | 217 | 29 | 138 | 3.71e-14 | 70.5 |
| MS.gene052659.t1 | MTR_0060s0090 | 40.476 | 84 | 46 | 1 | 164 | 247 | 59 | 138 | 1.15e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 109 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTGTGAACAATTTAT+TGG | 0.175600 | 3.3:-43377963 | MS.gene052659:CDS |
| GCATTGGACCTAAGTGGTTT+AGG | 0.241561 | 3.3:-43377528 | MS.gene052659:CDS |
| CAAGTGGTCATCCGACATTT+TGG | 0.259054 | 3.3:-43375811 | MS.gene052659:CDS |
| CAATTTATTGGGCCTGAAAA+AGG | 0.266409 | 3.3:-43377951 | MS.gene052659:CDS |
| ATCAAAGTCACTAATGTTTC+CGG | 0.287438 | 3.3:+43377773 | None:intergenic |
| CATTGGACCTAAGTGGTTTA+GGG | 0.287558 | 3.3:-43377527 | MS.gene052659:CDS |
| AGAGGTTTGGGTTGAGGAGG+GGG | 0.288365 | 3.3:-43377883 | MS.gene052659:CDS |
| CGTCCACCGCGTCATCTTCA+AGG | 0.302526 | 3.3:+43375624 | None:intergenic |
| TGAGCATATCATTGCAGTTT+TGG | 0.306428 | 3.3:-43375918 | MS.gene052659:CDS |
| TTTCCCTATATCCTAGTCTA+TGG | 0.314582 | 3.3:+43377355 | None:intergenic |
| AATGCTGACATTGAAGAATA+TGG | 0.316586 | 3.3:-43377693 | MS.gene052659:CDS |
| TTGATTGTGAACAATTTATT+GGG | 0.333896 | 3.3:-43377962 | MS.gene052659:CDS |
| GTTTAGGGCCTCTATTTGTT+AGG | 0.338727 | 3.3:-43377512 | MS.gene052659:CDS |
| GAGGTTTGGGTTGAGGAGGG+GGG | 0.344631 | 3.3:-43377882 | MS.gene052659:CDS |
| TTTGATGAAGGGGTCAATTA+TGG | 0.349566 | 3.3:-43377756 | MS.gene052659:CDS |
| TGAAGAAGAGGTTTGGGTTG+AGG | 0.359822 | 3.3:-43377889 | MS.gene052659:CDS |
| CTAATGTCTACCCCTTCTTC+AGG | 0.365813 | 3.3:+43377918 | None:intergenic |
| ACGAAGCATTGATGTCTAGA+TGG | 0.375449 | 3.3:-43375766 | MS.gene052659:CDS |
| TTGCCATAGACTAGGATATA+GGG | 0.378451 | 3.3:-43377358 | MS.gene052659:CDS |
| GAGAATCTGAAGAAGAGGTT+TGG | 0.387003 | 3.3:-43377896 | MS.gene052659:CDS |
| AAGAGGTTTGGGTTGAGGAG+GGG | 0.391610 | 3.3:-43377884 | MS.gene052659:CDS |
| ACTTATGCCTCTCATTTGTT+CGG | 0.395053 | 3.3:+43375661 | None:intergenic |
| TTTGCCATAGACTAGGATAT+AGG | 0.412972 | 3.3:-43377359 | MS.gene052659:CDS |
| CACTTGAAAATGTCTTCTGC+AGG | 0.413618 | 3.3:+43375977 | None:intergenic |
| AGAATCTGAAGAAGAGGTTT+GGG | 0.413927 | 3.3:-43377895 | MS.gene052659:CDS |
| GAAGAGGTTTGGGTTGAGGA+GGG | 0.419333 | 3.3:-43377885 | MS.gene052659:CDS |
| CCTTTAGTTCTGACAGAAGC+TGG | 0.420181 | 3.3:+43375587 | None:intergenic |
| AAGTTGCTTTATTGCAAAAC+GGG | 0.422706 | 3.3:-43377405 | MS.gene052659:CDS |
| AATGTTGAGTTTGACGAAGA+TGG | 0.422787 | 3.3:-43377810 | MS.gene052659:CDS |
| AATCCCTTGTAATGAGTAGA+TGG | 0.426360 | 3.3:-43375868 | MS.gene052659:CDS |
| TGTCAAAGGATGGAGTCATT+TGG | 0.430337 | 3.3:-43375950 | MS.gene052659:CDS |
| CAAGTTGCTTTATTGCAAAA+CGG | 0.435164 | 3.3:-43377406 | MS.gene052659:CDS |
| CCAGCTTCTGTCAGAACTAA+AGG | 0.436376 | 3.3:-43375587 | MS.gene052659:CDS |
| AATAAAGCAACTTGCCTTTG+CGG | 0.443504 | 3.3:+43377415 | None:intergenic |
| GATGCAGAAGGGGTAGACTA+TGG | 0.449884 | 3.3:-43377621 | MS.gene052659:CDS |
| AACATTAGTGACTTTGATGA+AGG | 0.453377 | 3.3:-43377768 | MS.gene052659:CDS |
| CGTCCTCAACACTATCAACT+TGG | 0.462744 | 3.3:+43377556 | None:intergenic |
| GATACACGCCACTCCCGGTC+TGG | 0.462923 | 3.3:+43376007 | None:intergenic |
| TATGAGTTCTATAAATCCTA+TGG | 0.471575 | 3.3:-43377459 | MS.gene052659:CDS |
| TTGTCCATCTACTCATTACA+AGG | 0.479590 | 3.3:+43375864 | None:intergenic |
| TTTGTTAGGAGAATTGCGTT+TGG | 0.482820 | 3.3:-43377498 | MS.gene052659:CDS |
| ACATGAGGCCAGACCGGGAG+TGG | 0.484974 | 3.3:-43376015 | MS.gene052659:CDS |
| AAGATGGAAGTGATGAAGAA+GGG | 0.485499 | 3.3:-43377722 | MS.gene052659:CDS |
| GCAATTCTCCTAACAAATAG+AGG | 0.486616 | 3.3:+43377504 | None:intergenic |
| CAAGTGTGCTTGTCAAAGGA+TGG | 0.486950 | 3.3:-43375960 | MS.gene052659:CDS |
| AGAAGAGGTTTGGGTTGAGG+AGG | 0.488296 | 3.3:-43377886 | MS.gene052659:CDS |
| CGATGACTACAAAGAGCAAA+TGG | 0.490292 | 3.3:-43375711 | MS.gene052659:CDS |
| GAAGATGGAAGTGATGAAGA+AGG | 0.490931 | 3.3:-43377723 | MS.gene052659:CDS |
| CGAAGCATTGATGTCTAGAT+GGG | 0.493225 | 3.3:-43375765 | MS.gene052659:CDS |
| TGTTGAGGACGTTGTGGCAT+TGG | 0.493296 | 3.3:-43377544 | MS.gene052659:CDS |
| TTTGACGAAGATGGAGGTAG+AGG | 0.507926 | 3.3:-43377801 | MS.gene052659:CDS |
| GAATATGGAAGTGATGAAGA+AGG | 0.510921 | 3.3:-43377678 | MS.gene052659:CDS |
| CCTATTGTTTGTTCAACTAG+TGG | 0.513149 | 3.3:+43375544 | None:intergenic |
| AGATGGAAGTGATGAAGAAG+GGG | 0.515964 | 3.3:-43377721 | MS.gene052659:CDS |
| AATATGGAAGTGATGAAGAA+GGG | 0.516003 | 3.3:-43377677 | MS.gene052659:CDS |
| GATGGAGGTAGAGGGCAATC+CGG | 0.516291 | 3.3:-43377792 | MS.gene052659:CDS |
| CACTATCAACTTGGACATAG+TGG | 0.517223 | 3.3:+43377565 | None:intergenic |
| CATTAGAGAATCTGAAGAAG+AGG | 0.518932 | 3.3:-43377901 | MS.gene052659:CDS |
| AATGGTAACATGGAATATGA+TGG | 0.519595 | 3.3:-43377855 | MS.gene052659:CDS |
| AAAGGTAGAGGTGGTGGTGT+TGG | 0.522448 | 3.3:-43375569 | MS.gene052659:CDS |
| AAATCCATTCGCTCTTCCAT+AGG | 0.527086 | 3.3:+43377443 | None:intergenic |
| TAAGTACATGAGGCCAGACC+GGG | 0.532082 | 3.3:-43376020 | MS.gene052659:CDS |
| GCTGCTACTTAATACGTCCT+TGG | 0.532350 | 3.3:+43375835 | None:intergenic |
| TATGGTGACATGGAAGAAGA+TGG | 0.533811 | 3.3:-43377738 | MS.gene052659:CDS |
| AAATCCTATGGAAGAGCGAA+TGG | 0.535778 | 3.3:-43377447 | MS.gene052659:CDS |
| TATGGTGACATGGAAGAAGA+TGG | 0.540056 | 3.3:-43377603 | MS.gene052659:CDS |
| ATAAGTACATGAGGCCAGAC+CGG | 0.542402 | 3.3:-43376021 | MS.gene052659:CDS |
| TATGATGGAAGTGATTATGA+AGG | 0.544947 | 3.3:-43377840 | MS.gene052659:CDS |
| CTACTCATTACAAGGGATTG+AGG | 0.547911 | 3.3:+43375872 | None:intergenic |
| AGAACTAAAGGTAGAGGTGG+TGG | 0.551384 | 3.3:-43375575 | MS.gene052659:CDS |
| GGTGATGGAAGTCCTGAAGA+AGG | 0.557553 | 3.3:-43377930 | MS.gene052659:CDS |
| ACATTTGTTTGCCATAGACT+AGG | 0.563483 | 3.3:-43377366 | MS.gene052659:CDS |
| CATTAGTGACTTTGATGAAG+GGG | 0.564858 | 3.3:-43377766 | MS.gene052659:CDS |
| GACGATGGAAGTGATGCAGA+AGG | 0.568544 | 3.3:-43377633 | MS.gene052659:CDS |
| TAAATGATACACGCCACTCC+CGG | 0.571008 | 3.3:+43376002 | None:intergenic |
| ATTGTTCACAATCAAAAGCT+CGG | 0.573528 | 3.3:+43377970 | None:intergenic |
| GTGATGGAAGTCCTGAAGAA+GGG | 0.574757 | 3.3:-43377929 | MS.gene052659:CDS |
| TCTGTCAGAACTAAAGGTAG+AGG | 0.578632 | 3.3:-43375581 | MS.gene052659:CDS |
| AGAACTCATATGCAATGTCT+AGG | 0.580623 | 3.3:+43377472 | None:intergenic |
| CGATGGAAGTGATGCAGAAG+GGG | 0.589903 | 3.3:-43377631 | MS.gene052659:CDS |
| ATATGGAAGTGATGAAGAAG+GGG | 0.595089 | 3.3:-43377676 | MS.gene052659:CDS |
| GTCATCTTCAAGGTTTGTCG+TGG | 0.598881 | 3.3:+43375634 | None:intergenic |
| ACATTAGTGACTTTGATGAA+GGG | 0.602492 | 3.3:-43377767 | MS.gene052659:CDS |
| ACGATGGAAGTGATGCAGAA+GGG | 0.604212 | 3.3:-43377632 | MS.gene052659:CDS |
| TTGACGAAGATGGAGGTAGA+GGG | 0.608903 | 3.3:-43377800 | MS.gene052659:CDS |
| GTCAGAACTAAAGGTAGAGG+TGG | 0.615727 | 3.3:-43375578 | MS.gene052659:CDS |
| ATAGAGGCCCTAAACCACTT+AGG | 0.619141 | 3.3:+43377520 | None:intergenic |
| GTTGTGGCATTGGACCTAAG+TGG | 0.621849 | 3.3:-43377534 | MS.gene052659:CDS |
| GTATTAAGTAGCAGCTCAAG+TGG | 0.623626 | 3.3:-43375827 | MS.gene052659:CDS |
| ATGCTTCGTATCTTGTAGCA+TGG | 0.623805 | 3.3:+43375780 | None:intergenic |
| TTGAAAGCCGAACAAATGAG+AGG | 0.623945 | 3.3:-43375668 | MS.gene052659:CDS |
| TGTCCATCTACTCATTACAA+GGG | 0.625754 | 3.3:+43375865 | None:intergenic |
| TGATGGAAGTCCTGAAGAAG+GGG | 0.631965 | 3.3:-43377928 | MS.gene052659:CDS |
| TGTCCAAGTTGATAGTGTTG+AGG | 0.634638 | 3.3:-43377559 | MS.gene052659:CDS |
| ACTGCAATGATATGCTCACA+TGG | 0.637565 | 3.3:+43375923 | None:intergenic |
| GTTGAGTTTGACGAAGATGG+AGG | 0.639808 | 3.3:-43377807 | MS.gene052659:CDS |
| ACTTGAAAATGTCTTCTGCA+GGG | 0.641856 | 3.3:+43375978 | None:intergenic |
| AGGGGTCAATTATGGTGACA+TGG | 0.648973 | 3.3:-43377748 | MS.gene052659:CDS |
| ATACAGTTAATAAGTACATG+AGG | 0.652022 | 3.3:-43376030 | MS.gene052659:intron |
| TCTAAATTAGTCATTGACAA+CGG | 0.654146 | 3.3:-43375734 | MS.gene052659:CDS |
| AATGCTGACATTGAAGACGA+TGG | 0.658945 | 3.3:-43377648 | MS.gene052659:CDS |
| AGGGGTAGACTATGGTGACA+TGG | 0.659480 | 3.3:-43377613 | MS.gene052659:CDS |
| GAAGCATTGATGTCTAGATG+GGG | 0.660190 | 3.3:-43375764 | MS.gene052659:CDS |
| TGATAGTGTTGAGGACGTTG+TGG | 0.677130 | 3.3:-43377550 | MS.gene052659:CDS |
| TGGTGTGAGTCCCAAAATGT+CGG | 0.680782 | 3.3:+43375800 | None:intergenic |
| AAGCATTGATGTCTAGATGG+GGG | 0.687975 | 3.3:-43375763 | MS.gene052659:CDS |
| CAAAGAGCAAATGGACATTG+CGG | 0.708700 | 3.3:-43375702 | MS.gene052659:CDS |
| GACAAACCTTGAAGATGACG+CGG | 0.713712 | 3.3:-43375630 | MS.gene052659:CDS |
| AAACCTTGAAGATGACGCGG+TGG | 0.719654 | 3.3:-43375627 | MS.gene052659:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAACAATATGTTAAAAAG+TGG | - | chr3.3:43376414-43376433 | MS.gene052659:intron | 20.0% |
| !! | TTGATTGTGAACAATTTATT+GGG | - | chr3.3:43375572-43375591 | MS.gene052659:CDS | 20.0% |
| !! | TTTGATTGTGAACAATTTAT+TGG | - | chr3.3:43375571-43375590 | MS.gene052659:CDS | 20.0% |
| ! | ATACAGTTAATAAGTACATG+AGG | - | chr3.3:43377504-43377523 | MS.gene052659:CDS | 25.0% |
| ! | TATGAGTTCTATAAATCCTA+TGG | - | chr3.3:43376075-43376094 | MS.gene052659:intron | 25.0% |
| ! | TCTAAATTAGTCATTGACAA+CGG | - | chr3.3:43377800-43377819 | MS.gene052659:CDS | 25.0% |
| !! | CAATTTAGAAAGTGTATGTT+GGG | - | chr3.3:43377029-43377048 | MS.gene052659:intron | 25.0% |
| !! | GATATGATAAAATTGGTTTC+CGG | - | chr3.3:43376484-43376503 | MS.gene052659:intron | 25.0% |
| !! | TCAATTTAGAAAGTGTATGT+TGG | - | chr3.3:43377028-43377047 | MS.gene052659:intron | 25.0% |
| !!! | AACTCTACTATTATTTTTGC+TGG | - | chr3.3:43376786-43376805 | MS.gene052659:intron | 25.0% |
| AAAAGGAAGAAACTTATGTC+TGG | - | chr3.3:43376826-43376845 | MS.gene052659:intron | 30.0% | |
| AAAGGAAGAAACTTATGTCT+GGG | - | chr3.3:43376827-43376846 | MS.gene052659:intron | 30.0% | |
| AAATGAAGCATATATGCGAT+TGG | + | chr3.3:43376448-43376467 | None:intergenic | 30.0% | |
| AACATTAGTGACTTTGATGA+AGG | - | chr3.3:43375766-43375785 | MS.gene052659:CDS | 30.0% | |
| AATATGGAAGTGATGAAGAA+GGG | - | chr3.3:43375857-43375876 | MS.gene052659:CDS | 30.0% | |
| AATGAAGCATATATGCGATT+GGG | + | chr3.3:43376447-43376466 | None:intergenic | 30.0% | |
| AATGCTGACATTGAAGAATA+TGG | - | chr3.3:43375841-43375860 | MS.gene052659:CDS | 30.0% | |
| AATGGTAACATGGAATATGA+TGG | - | chr3.3:43375679-43375698 | MS.gene052659:CDS | 30.0% | |
| ACATTAGTGACTTTGATGAA+GGG | - | chr3.3:43375767-43375786 | MS.gene052659:CDS | 30.0% | |
| AGAAACATATACGAAGAGAA+AGG | - | chr3.3:43377133-43377152 | MS.gene052659:intron | 30.0% | |
| ATACAATCATTGCAGAAGAT+CGG | + | chr3.3:43377451-43377470 | None:intergenic | 30.0% | |
| ATCAAAGTCACTAATGTTTC+CGG | + | chr3.3:43375764-43375783 | None:intergenic | 30.0% | |
| ATTAAGTTATCTTCGTGGAT+TGG | - | chr3.3:43376572-43376591 | MS.gene052659:intron | 30.0% | |
| ATTGTTCACAATCAAAAGCT+CGG | + | chr3.3:43375567-43375586 | None:intergenic | 30.0% | |
| ! | AAGTTGCTTTATTGCAAAAC+GGG | - | chr3.3:43376129-43376148 | MS.gene052659:intron | 30.0% |
| ! | ATTTGGAAACACTCGTTTTA+TGG | + | chr3.3:43376934-43376953 | None:intergenic | 30.0% |
| ! | CAAGTTGCTTTATTGCAAAA+CGG | - | chr3.3:43376128-43376147 | MS.gene052659:intron | 30.0% |
| ! | GTAGACTTTGAAAGTGATTA+TGG | - | chr3.3:43377329-43377348 | MS.gene052659:CDS | 30.0% |
| ! | TATGATGGAAGTGATTATGA+AGG | - | chr3.3:43375694-43375713 | MS.gene052659:CDS | 30.0% |
| AAGATGGAAGTGATGAAGAA+GGG | - | chr3.3:43375812-43375831 | MS.gene052659:CDS | 35.0% | |
| AATAAAGCAACTTGCCTTTG+CGG | + | chr3.3:43376122-43376141 | None:intergenic | 35.0% | |
| AATCCCTTGTAATGAGTAGA+TGG | - | chr3.3:43377666-43377685 | MS.gene052659:CDS | 35.0% | |
| AATGTTGAGTTTGACGAAGA+TGG | - | chr3.3:43375724-43375743 | MS.gene052659:CDS | 35.0% | |
| ACATTTGTTTGCCATAGACT+AGG | - | chr3.3:43376168-43376187 | MS.gene052659:intron | 35.0% | |
| ACTTATGCCTCTCATTTGTT+CGG | + | chr3.3:43377876-43377895 | None:intergenic | 35.0% | |
| ACTTGAAAATGTCTTCTGCA+GGG | + | chr3.3:43377559-43377578 | None:intergenic | 35.0% | |
| AGAACTCATATGCAATGTCT+AGG | + | chr3.3:43376065-43376084 | None:intergenic | 35.0% | |
| AGAATCTGAAGAAGAGGTTT+GGG | - | chr3.3:43375639-43375658 | MS.gene052659:CDS | 35.0% | |
| AGCTATTGTTGCTGATGAAA+AGG | - | chr3.3:43376809-43376828 | MS.gene052659:intron | 35.0% | |
| AGTGTGCTTGAAAAACATCA+TGG | + | chr3.3:43376610-43376629 | None:intergenic | 35.0% | |
| ATATGGAAGTGATGAAGAAG+GGG | - | chr3.3:43375858-43375877 | MS.gene052659:CDS | 35.0% | |
| CAAACACAACTAAATGGCAA+TGG | + | chr3.3:43376749-43376768 | None:intergenic | 35.0% | |
| CAATTTATTGGGCCTGAAAA+AGG | - | chr3.3:43375583-43375602 | MS.gene052659:CDS | 35.0% | |
| CACAGTCTATGATAAGCATT+TGG | + | chr3.3:43376951-43376970 | None:intergenic | 35.0% | |
| CATTAGAGAATCTGAAGAAG+AGG | - | chr3.3:43375633-43375652 | MS.gene052659:CDS | 35.0% | |
| CATTAGTGACTTTGATGAAG+GGG | - | chr3.3:43375768-43375787 | MS.gene052659:CDS | 35.0% | |
| CGTCTTGATTACCAAGTTTA+TGG | - | chr3.3:43376681-43376700 | MS.gene052659:intron | 35.0% | |
| CTAGGATATAGGGAAAAAAG+AGG | - | chr3.3:43376186-43376205 | MS.gene052659:intron | 35.0% | |
| GAAAAACCTAATACTCGATG+TGG | - | chr3.3:43376237-43376256 | MS.gene052659:intron | 35.0% | |
| GAATATGGAAGTGATGAAGA+AGG | - | chr3.3:43375856-43375875 | MS.gene052659:CDS | 35.0% | |
| GATTATACAGATCTTTCCTC+CGG | + | chr3.3:43376506-43376525 | None:intergenic | 35.0% | |
| GCAATTCTCCTAACAAATAG+AGG | + | chr3.3:43376033-43376052 | None:intergenic | 35.0% | |
| GCAGGAGGATATGATAAAAT+TGG | - | chr3.3:43376477-43376496 | MS.gene052659:intron | 35.0% | |
| GGAAAAAAGAGGATTAAGTG+AGG | - | chr3.3:43376197-43376216 | MS.gene052659:intron | 35.0% | |
| GTGTGCTTGAAAAACATCAT+GGG | + | chr3.3:43376609-43376628 | None:intergenic | 35.0% | |
| TAAACATTATGACACAACGC+TGG | - | chr3.3:43376286-43376305 | MS.gene052659:intron | 35.0% | |
| TAGATGGACAAAAAATGCCA+AGG | - | chr3.3:43377682-43377701 | MS.gene052659:CDS | 35.0% | |
| TCTGCATTAAGTTATCTTCG+TGG | - | chr3.3:43376567-43376586 | MS.gene052659:intron | 35.0% | |
| TCTTCTGCAATGATTGTATC+TGG | - | chr3.3:43377452-43377471 | MS.gene052659:CDS | 35.0% | |
| TGGTGATTTAGCTATGAAGA+AGG | - | chr3.3:43376908-43376927 | MS.gene052659:intron | 35.0% | |
| TGTCCATCTACTCATTACAA+GGG | + | chr3.3:43377672-43377691 | None:intergenic | 35.0% | |
| TGTCTGAATCTGTCATTACA+CGG | + | chr3.3:43376386-43376405 | None:intergenic | 35.0% | |
| TGTTCATTCTCGTTACAACT+TGG | - | chr3.3:43377247-43377266 | MS.gene052659:intron | 35.0% | |
| TTCGCATTTGATGCAACATA+TGG | - | chr3.3:43376711-43376730 | MS.gene052659:intron | 35.0% | |
| TTGCCATAGACTAGGATATA+GGG | - | chr3.3:43376176-43376195 | MS.gene052659:intron | 35.0% | |
| TTGTCCATCTACTCATTACA+AGG | + | chr3.3:43377673-43377692 | None:intergenic | 35.0% | |
| TTTCCCTATATCCTAGTCTA+TGG | + | chr3.3:43376182-43376201 | None:intergenic | 35.0% | |
| TTTGATGAAGGGGTCAATTA+TGG | - | chr3.3:43375778-43375797 | MS.gene052659:CDS | 35.0% | |
| TTTGCCATAGACTAGGATAT+AGG | - | chr3.3:43376175-43376194 | MS.gene052659:intron | 35.0% | |
| TTTGTTAGGAGAATTGCGTT+TGG | - | chr3.3:43376036-43376055 | MS.gene052659:intron | 35.0% | |
| ! | ATATACGAAGAGAAAGGCAT+GGG | - | chr3.3:43377139-43377158 | MS.gene052659:intron | 35.0% |
| ! | ATGAGATTGGAGAATTTTCC+AGG | - | chr3.3:43377057-43377076 | MS.gene052659:intron | 35.0% |
| ! | ATGATAAAATTGGTTTCCGG+AGG | - | chr3.3:43376487-43376506 | MS.gene052659:intron | 35.0% |
| ! | TGAGCATATCATTGCAGTTT+TGG | - | chr3.3:43377616-43377635 | MS.gene052659:CDS | 35.0% |
| ! | TTTTTCCATCACACCAAAAC+AGG | + | chr3.3:43376659-43376678 | None:intergenic | 35.0% |
| !! | GCTGAAACTGTTGATTCATT+TGG | - | chr3.3:43377086-43377105 | MS.gene052659:intron | 35.0% |
| !!! | TTTTCAAGTGTGCTTGTCAA+AGG | - | chr3.3:43377570-43377589 | MS.gene052659:CDS | 35.0% |
| AAATCCATTCGCTCTTCCAT+AGG | + | chr3.3:43376094-43376113 | None:intergenic | 40.0% | |
| AAATCCTATGGAAGAGCGAA+TGG | - | chr3.3:43376087-43376106 | MS.gene052659:intron | 40.0% | |
| AATGCTGACATTGAAGACGA+TGG | - | chr3.3:43375886-43375905 | MS.gene052659:CDS | 40.0% | |
| ACTGCAATGATATGCTCACA+TGG | + | chr3.3:43377614-43377633 | None:intergenic | 40.0% | |
| AGAACTACATCAAGATGCGA+GGG | - | chr3.3:43377200-43377219 | MS.gene052659:intron | 40.0% | |
| AGATGGAAGTGATGAAGAAG+GGG | - | chr3.3:43375813-43375832 | MS.gene052659:CDS | 40.0% | |
| ATGCTTCGTATCTTGTAGCA+TGG | + | chr3.3:43377757-43377776 | None:intergenic | 40.0% | |
| ATGTTGGGTGACTATGAGAT+TGG | - | chr3.3:43377044-43377063 | MS.gene052659:intron | 40.0% | |
| CAAAGAGCAAATGGACATTG+CGG | - | chr3.3:43377832-43377851 | MS.gene052659:CDS | 40.0% | |
| CACCAGCAAACACAACTAAA+TGG | + | chr3.3:43376755-43376774 | None:intergenic | 40.0% | |
| CACTATCAACTTGGACATAG+TGG | + | chr3.3:43375972-43375991 | None:intergenic | 40.0% | |
| CACTTGAAAATGTCTTCTGC+AGG | + | chr3.3:43377560-43377579 | None:intergenic | 40.0% | |
| CATATACGAAGAGAAAGGCA+TGG | - | chr3.3:43377138-43377157 | MS.gene052659:intron | 40.0% | |
| CATTGGACCTAAGTGGTTTA+GGG | - | chr3.3:43376007-43376026 | MS.gene052659:CDS | 40.0% | |
| CGAATACGTCACCATAAACT+TGG | + | chr3.3:43376695-43376714 | None:intergenic | 40.0% | |
| CGATGACTACAAAGAGCAAA+TGG | - | chr3.3:43377823-43377842 | MS.gene052659:CDS | 40.0% | |
| CTAAATTGACCCACAAATGC+AGG | + | chr3.3:43377017-43377036 | None:intergenic | 40.0% | |
| CTACTCATTACAAGGGATTG+AGG | + | chr3.3:43377665-43377684 | None:intergenic | 40.0% | |
| CTGGATCGAAAGAAACATGT+GGG | - | chr3.3:43377471-43377490 | MS.gene052659:CDS | 40.0% | |
| CTTATCATAGACTGTGTGTG+TGG | - | chr3.3:43376955-43376974 | MS.gene052659:intron | 40.0% | |
| GAAGATGGAAGTGATGAAGA+AGG | - | chr3.3:43375811-43375830 | MS.gene052659:CDS | 40.0% | |
| GAGAATCTGAAGAAGAGGTT+TGG | - | chr3.3:43375638-43375657 | MS.gene052659:CDS | 40.0% | |
| GCTTCATTTGCAAATCAAGC+AGG | - | chr3.3:43376459-43376478 | MS.gene052659:intron | 40.0% | |
| GTATTAAGTAGCAGCTCAAG+TGG | - | chr3.3:43377707-43377726 | MS.gene052659:CDS | 40.0% | |
| GTGGATGTCAAGCTATGTTT+CGG | - | chr3.3:43376256-43376275 | MS.gene052659:intron | 40.0% | |
| TATGGTGACATGGAAGAAGA+TGG | - | chr3.3:43375796-43375815 | MS.gene052659:CDS | 40.0% | |
| TCATTTGCAAATCAAGCAGG+AGG | - | chr3.3:43376462-43376481 | MS.gene052659:intron | 40.0% | |
| TCTGGATCGAAAGAAACATG+TGG | - | chr3.3:43377470-43377489 | MS.gene052659:CDS | 40.0% | |
| TCTGTCAGAACTAAAGGTAG+AGG | - | chr3.3:43377953-43377972 | MS.gene052659:CDS | 40.0% | |
| TGACATCCACATCGAGTATT+AGG | + | chr3.3:43376246-43376265 | None:intergenic | 40.0% | |
| TGGATGTCAAGCTATGTTTC+GGG | - | chr3.3:43376257-43376276 | MS.gene052659:intron | 40.0% | |
| TGTCAAAGGATGGAGTCATT+TGG | - | chr3.3:43377584-43377603 | MS.gene052659:CDS | 40.0% | |
| TTGAAAGCCGAACAAATGAG+AGG | - | chr3.3:43377866-43377885 | MS.gene052659:CDS | 40.0% | |
| TTGGATTGCACGACAACAAT+TGG | - | chr3.3:43377105-43377124 | MS.gene052659:intron | 40.0% | |
| ! | AAGTGGTCATCCGACATTTT+GGG | - | chr3.3:43377724-43377743 | MS.gene052659:CDS | 40.0% |
| ! | GTAGACTACAACACCTGTTT+TGG | - | chr3.3:43376643-43376662 | MS.gene052659:intron | 40.0% |
| ! | GTTTAGGGCCTCTATTTGTT+AGG | - | chr3.3:43376022-43376041 | MS.gene052659:CDS | 40.0% |
| ! | TGCCATTTAGTTGTGTTTGC+TGG | - | chr3.3:43376750-43376769 | MS.gene052659:intron | 40.0% |
| ! | TGGAGAATTTTCCAGGAAGT+GGG | - | chr3.3:43377064-43377083 | MS.gene052659:intron | 40.0% |
| ! | TTGGAGAATTTTCCAGGAAG+TGG | - | chr3.3:43377063-43377082 | MS.gene052659:intron | 40.0% |
| !! | AAGCACACTACTGATTCTAC+AGG | - | chr3.3:43376621-43376640 | MS.gene052659:intron | 40.0% |
| !! | AAGCATTGATGTCTAGATGG+GGG | - | chr3.3:43377771-43377790 | MS.gene052659:CDS | 40.0% |
| !! | AATGGATTTTCAGTCCGCAA+AGG | - | chr3.3:43376105-43376124 | MS.gene052659:intron | 40.0% |
| !! | ACGAAGCATTGATGTCTAGA+TGG | - | chr3.3:43377768-43377787 | MS.gene052659:CDS | 40.0% |
| !! | ATGCTGCAGTTTTTGATGAC+CGG | - | chr3.3:43376310-43376329 | MS.gene052659:intron | 40.0% |
| !! | CGAAGCATTGATGTCTAGAT+GGG | - | chr3.3:43377769-43377788 | MS.gene052659:CDS | 40.0% |
| !! | CGGTTTTTGGAAGCAATGTT+TGG | - | chr3.3:43376858-43376877 | MS.gene052659:intron | 40.0% |
| !! | GAAGCATTGATGTCTAGATG+GGG | - | chr3.3:43377770-43377789 | MS.gene052659:CDS | 40.0% |
| !! | TGTCCAAGTTGATAGTGTTG+AGG | - | chr3.3:43375975-43375994 | MS.gene052659:CDS | 40.0% |
| !! | TTCTGAAGCCTGCAAAAAAC+TGG | + | chr3.3:43377184-43377203 | None:intergenic | 40.0% |
| AAATGCAGGATCGCCTATGT+TGG | + | chr3.3:43377003-43377022 | None:intergenic | 45.0% | |
| ACCGCATGAAGTTGAGACAA+CGG | + | chr3.3:43377295-43377314 | None:intergenic | 45.0% | |
| ACCGTTGTCTCAACTTCATG+CGG | - | chr3.3:43377291-43377310 | MS.gene052659:intron | 45.0% | |
| ACGATGGAAGTGATGCAGAA+GGG | - | chr3.3:43375902-43375921 | MS.gene052659:CDS | 45.0% | |
| AGAACTAAAGGTAGAGGTGG+TGG | - | chr3.3:43377959-43377978 | MS.gene052659:CDS | 45.0% | |
| AGGGGTCAATTATGGTGACA+TGG | - | chr3.3:43375786-43375805 | MS.gene052659:CDS | 45.0% | |
| ATAAGTACATGAGGCCAGAC+CGG | - | chr3.3:43377513-43377532 | MS.gene052659:CDS | 45.0% | |
| ATACTAGTGCATGGTTGTGC+CGG | + | chr3.3:43376332-43376351 | None:intergenic | 45.0% | |
| ATAGAGGCCCTAAACCACTT+AGG | + | chr3.3:43376017-43376036 | None:intergenic | 45.0% | |
| ATAGGCGATCCTGCATTTGT+GGG | - | chr3.3:43377005-43377024 | MS.gene052659:intron | 45.0% | |
| ATGGGCAACAGCACATATAC+GGG | - | chr3.3:43377157-43377176 | MS.gene052659:intron | 45.0% | |
| ATTGGGCCTGAAAAAGGTGA+TGG | - | chr3.3:43375589-43375608 | MS.gene052659:CDS | 45.0% | |
| CAACTTCATGCGGTATAGAG+AGG | - | chr3.3:43377301-43377320 | MS.gene052659:intron | 45.0% | |
| CAAGTGTGCTTGTCAAAGGA+TGG | - | chr3.3:43377574-43377593 | MS.gene052659:CDS | 45.0% | |
| CAGAACTACATCAAGATGCG+AGG | - | chr3.3:43377199-43377218 | MS.gene052659:intron | 45.0% | |
| CATGGGCAACAGCACATATA+CGG | - | chr3.3:43377156-43377175 | MS.gene052659:intron | 45.0% | |
| CCAGCTTCTGTCAGAACTAA+AGG | - | chr3.3:43377947-43377966 | MS.gene052659:CDS | 45.0% | |
| CGTCCTCAACACTATCAACT+TGG | + | chr3.3:43375981-43376000 | None:intergenic | 45.0% | |
| CTAATGTCTACCCCTTCTTC+AGG | + | chr3.3:43375619-43375638 | None:intergenic | 45.0% | |
| CTAGTATCGCAGGAACATTG+TGG | - | chr3.3:43376345-43376364 | MS.gene052659:intron | 45.0% | |
| CTTATGTCTGGGTGCTTTCA+CGG | - | chr3.3:43376838-43376857 | MS.gene052659:intron | 45.0% | |
| GAACTACATCAAGATGCGAG+GGG | - | chr3.3:43377201-43377220 | MS.gene052659:intron | 45.0% | |
| GACAAACCTTGAAGATGACG+CGG | - | chr3.3:43377904-43377923 | MS.gene052659:CDS | 45.0% | |
| GCATTGGACCTAAGTGGTTT+AGG | - | chr3.3:43376006-43376025 | MS.gene052659:CDS | 45.0% | |
| GGGAATCTTGTAGAGAGAAC+TGG | + | chr3.3:43377359-43377378 | None:intergenic | 45.0% | |
| GTCAGAACTAAAGGTAGAGG+TGG | - | chr3.3:43377956-43377975 | MS.gene052659:CDS | 45.0% | |
| GTCATCTTCAAGGTTTGTCG+TGG | + | chr3.3:43377903-43377922 | None:intergenic | 45.0% | |
| GTTGAGTTTGACGAAGATGG+AGG | - | chr3.3:43375727-43375746 | MS.gene052659:CDS | 45.0% | |
| TAAATGATACACGCCACTCC+CGG | + | chr3.3:43377535-43377554 | None:intergenic | 45.0% | |
| TGATGGAAGTCCTGAAGAAG+GGG | - | chr3.3:43375606-43375625 | MS.gene052659:CDS | 45.0% | |
| TGGTGTGAGTCCCAAAATGT+CGG | + | chr3.3:43377737-43377756 | None:intergenic | 45.0% | |
| TTGACGAAGATGGAGGTAGA+GGG | - | chr3.3:43375734-43375753 | MS.gene052659:CDS | 45.0% | |
| TTTGACGAAGATGGAGGTAG+AGG | - | chr3.3:43375733-43375752 | MS.gene052659:CDS | 45.0% | |
| ! | CAAGTGGTCATCCGACATTT+TGG | - | chr3.3:43377723-43377742 | MS.gene052659:CDS | 45.0% |
| ! | GCTGCTACTTAATACGTCCT+TGG | + | chr3.3:43377702-43377721 | None:intergenic | 45.0% |
| ! | GGACTTCCATCACCTTTTTC+AGG | + | chr3.3:43375598-43375617 | None:intergenic | 45.0% |
| ! | GTGATGGAAGTCCTGAAGAA+GGG | - | chr3.3:43375605-43375624 | MS.gene052659:CDS | 45.0% |
| ! | TGATAGTGTTGAGGACGTTG+TGG | - | chr3.3:43375984-43376003 | MS.gene052659:CDS | 45.0% |
| !! | CCTTTAGTTCTGACAGAAGC+TGG | + | chr3.3:43377950-43377969 | None:intergenic | 45.0% |
| !! | TGAAGAAGAGGTTTGGGTTG+AGG | - | chr3.3:43375645-43375664 | MS.gene052659:CDS | 45.0% |
| !!! | CAACACCTGTTTTGGTGTGA+TGG | - | chr3.3:43376651-43376670 | MS.gene052659:intron | 45.0% |
| AAACCTTGAAGATGACGCGG+TGG | - | chr3.3:43377907-43377926 | MS.gene052659:CDS | 50.0% | |
| AACAGTTTCAGCCCACTTCC+TGG | + | chr3.3:43377078-43377097 | None:intergenic | 50.0% | |
| AGGGGTAGACTATGGTGACA+TGG | - | chr3.3:43375921-43375940 | MS.gene052659:CDS | 50.0% | |
| AGGGGTTGCATTCAGAGATG+GGG | - | chr3.3:43377219-43377238 | MS.gene052659:intron | 50.0% | |
| CAACCATGCACTAGTATCGC+AGG | - | chr3.3:43376335-43376354 | MS.gene052659:intron | 50.0% | |
| CACCAGAGAGCTCAAGCTTA+GGG | + | chr3.3:43377379-43377398 | None:intergenic | 50.0% | |
| CATAGGCGATCCTGCATTTG+TGG | - | chr3.3:43377004-43377023 | MS.gene052659:intron | 50.0% | |
| CCAACTGCTGTGATCACTGA+TGG | - | chr3.3:43376888-43376907 | MS.gene052659:intron | 50.0% | |
| CCATCAGTGATCACAGCAGT+TGG | + | chr3.3:43376891-43376910 | None:intergenic | 50.0% | |
| CGATGGAAGTGATGCAGAAG+GGG | - | chr3.3:43375903-43375922 | MS.gene052659:CDS | 50.0% | |
| CGCAATGCAACGTCCAACAT+AGG | - | chr3.3:43376987-43377006 | MS.gene052659:intron | 50.0% | |
| GACGATGGAAGTGATGCAGA+AGG | - | chr3.3:43375901-43375920 | MS.gene052659:CDS | 50.0% | |
| GAGGGGTTGCATTCAGAGAT+GGG | - | chr3.3:43377218-43377237 | MS.gene052659:intron | 50.0% | |
| GATGCAGAAGGGGTAGACTA+TGG | - | chr3.3:43375913-43375932 | MS.gene052659:CDS | 50.0% | |
| GGGGGGATACAATGGTAACA+TGG | - | chr3.3:43375669-43375688 | MS.gene052659:CDS | 50.0% | |
| GTTCCTGCGATACTAGTGCA+TGG | + | chr3.3:43376341-43376360 | None:intergenic | 50.0% | |
| TAAGTACATGAGGCCAGACC+GGG | - | chr3.3:43377514-43377533 | MS.gene052659:CDS | 50.0% | |
| TGAGGCGAATAGACAGCGTA+AGG | - | chr3.3:43376215-43376234 | MS.gene052659:intron | 50.0% | |
| TGGGCAACAGCACATATACG+GGG | - | chr3.3:43377158-43377177 | MS.gene052659:intron | 50.0% | |
| TGTTGAGGACGTTGTGGCAT+TGG | - | chr3.3:43375990-43376009 | MS.gene052659:CDS | 50.0% | |
| TTCCCTAAGCTTGAGCTCTC+TGG | - | chr3.3:43377374-43377393 | MS.gene052659:CDS | 50.0% | |
| ! | AAAGGTAGAGGTGGTGGTGT+TGG | - | chr3.3:43377965-43377984 | MS.gene052659:CDS | 50.0% |
| ! | CTGGGTGCTTTCACGGTTTT+TGG | - | chr3.3:43376845-43376864 | MS.gene052659:intron | 50.0% |
| ! | GTTGTGGCATTGGACCTAAG+TGG | - | chr3.3:43376000-43376019 | MS.gene052659:CDS | 50.0% |
| !! | AAGAGGTTTGGGTTGAGGAG+GGG | - | chr3.3:43375650-43375669 | MS.gene052659:CDS | 50.0% |
| !! | AGAAGAGGTTTGGGTTGAGG+AGG | - | chr3.3:43375648-43375667 | MS.gene052659:CDS | 50.0% |
| !! | GAAGAGGTTTGGGTTGAGGA+GGG | - | chr3.3:43375649-43375668 | MS.gene052659:CDS | 50.0% |
| !! | GGTGATGGAAGTCCTGAAGA+AGG | - | chr3.3:43375604-43375623 | MS.gene052659:CDS | 50.0% |
| !!! | ATACGGGGCCAGTTTTTTGC+AGG | - | chr3.3:43377173-43377192 | MS.gene052659:intron | 50.0% |
| CGAGGGGTTGCATTCAGAGA+TGG | - | chr3.3:43377217-43377236 | MS.gene052659:intron | 55.0% | |
| GATGGAGGTAGAGGGCAATC+CGG | - | chr3.3:43375742-43375761 | MS.gene052659:CDS | 55.0% | |
| GCACCAGAGAGCTCAAGCTT+AGG | + | chr3.3:43377380-43377399 | None:intergenic | 55.0% | |
| GCTTGAGCTCTCTGGTGCAA+AGG | - | chr3.3:43377382-43377401 | MS.gene052659:CDS | 55.0% | |
| GTTGAGGAGGGGGGATACAA+TGG | - | chr3.3:43375661-43375680 | MS.gene052659:CDS | 55.0% | |
| !! | AGAGGTTTGGGTTGAGGAGG+GGG | - | chr3.3:43375651-43375670 | MS.gene052659:CDS | 55.0% |
| CGTCCACCGCGTCATCTTCA+AGG | + | chr3.3:43377913-43377932 | None:intergenic | 60.0% | |
| !! | GAGGTTTGGGTTGAGGAGGG+GGG | - | chr3.3:43375652-43375671 | MS.gene052659:CDS | 60.0% |
| ACATGAGGCCAGACCGGGAG+TGG | - | chr3.3:43377519-43377538 | MS.gene052659:CDS | 65.0% | |
| GATACACGCCACTCCCGGTC+TGG | + | chr3.3:43377530-43377549 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 43375556 | 43378000 | 43375556 | ID=MS.gene052659 |
| chr3.3 | mRNA | 43375556 | 43378000 | 43375556 | ID=MS.gene052659.t1;Parent=MS.gene052659 |
| chr3.3 | exon | 43377325 | 43378000 | 43377325 | ID=MS.gene052659.t1.exon1;Parent=MS.gene052659.t1 |
| chr3.3 | CDS | 43377325 | 43378000 | 43377325 | ID=cds.MS.gene052659.t1;Parent=MS.gene052659.t1 |
| chr3.3 | exon | 43375556 | 43376046 | 43375556 | ID=MS.gene052659.t1.exon2;Parent=MS.gene052659.t1 |
| chr3.3 | CDS | 43375556 | 43376046 | 43375556 | ID=cds.MS.gene052659.t1;Parent=MS.gene052659.t1 |
| Gene Sequence |
| Protein sequence |
