Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052747.t1 | GAU21539.1 | 48.1 | 345 | 75 | 6 | 12 | 258 | 8 | 346 | 1.20E-65 | 260 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052747.t1 | A0A2Z6MRF5 | 48.1 | 345 | 75 | 6 | 12 | 258 | 8 | 346 | 8.4e-66 | 260.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052747.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052747.t1 | MTR_5g095070 | 48.162 | 272 | 69 | 6 | 6 | 215 | 9 | 270 | 2.16e-69 | 215 |
| MS.gene052747.t1 | MTR_1g084150 | 56.875 | 160 | 34 | 2 | 133 | 258 | 64 | 222 | 7.70e-55 | 176 |
| MS.gene052747.t1 | MTR_4g015240 | 89.855 | 69 | 7 | 0 | 190 | 258 | 32 | 100 | 5.43e-39 | 131 |
| MS.gene052747.t1 | MTR_5g080030 | 65.306 | 98 | 34 | 0 | 30 | 127 | 40 | 137 | 6.22e-37 | 135 |
| MS.gene052747.t1 | MTR_5g080030 | 51.095 | 137 | 55 | 5 | 128 | 258 | 271 | 401 | 7.15e-28 | 110 |
| MS.gene052747.t1 | MTR_5g080030 | 60.976 | 82 | 32 | 0 | 128 | 209 | 195 | 276 | 1.22e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAAATCAACTGGGAAAA+AGG | 0.246482 | 4.4:-85422450 | None:intergenic |
| AACGTTACCATAGGTGAGTT+TGG | 0.366922 | 4.4:-85418468 | None:intergenic |
| CAGTAAGTATCGAAATCAAC+TGG | 0.371661 | 4.4:-85422458 | None:intergenic |
| TTTGAGAAATTGTACTTCTC+TGG | 0.396109 | 4.4:+85421794 | MS.gene052747:CDS |
| GTAAAGCAGATACAAGTCTA+AGG | 0.401467 | 4.4:-85418832 | None:intergenic |
| AAACGACGAGGTGGTCCAAC+TGG | 0.405430 | 4.4:+85421987 | MS.gene052747:CDS |
| GATGTCTGTCGACGCTAAAC+AGG | 0.415004 | 4.4:+85422121 | MS.gene052747:CDS |
| AGGTTGCTCTACAAAACAAA+TGG | 0.427597 | 4.4:+85421681 | MS.gene052747:intron |
| GTCTCTGCACTGAAACTAGA+AGG | 0.436460 | 4.4:+85421713 | MS.gene052747:CDS |
| CTGGTGAAAACCTCCTCTTC+TGG | 0.440306 | 4.4:-85418865 | None:intergenic |
| CAGAAAAGGCCTCGTCTGTC+CGG | 0.450653 | 4.4:+85422323 | MS.gene052747:CDS |
| AGACTTGTATCTGCTTTACT+TGG | 0.470775 | 4.4:+85418836 | MS.gene052747:CDS |
| AGTTTGACATAGAAGTCATC+AGG | 0.477490 | 4.4:-85418518 | None:intergenic |
| TCGATTAAAAGCTCATGTTC+CGG | 0.480755 | 4.4:+85422049 | MS.gene052747:CDS |
| ATGGTAACGTTGTGTCCAAT+GGG | 0.492163 | 4.4:+85418480 | MS.gene052747:CDS |
| TACTTCTCTGGCAGCTCCAA+AGG | 0.496952 | 4.4:+85421806 | MS.gene052747:CDS |
| TACGCATGGCTATTGATGCT+TGG | 0.507330 | 4.4:+85422093 | MS.gene052747:CDS |
| TATGGTAACGTTGTGTCCAA+TGG | 0.507338 | 4.4:+85418479 | MS.gene052747:CDS |
| AGAAGTGTATTGTTTCCCAT+TGG | 0.509331 | 4.4:-85418495 | None:intergenic |
| TGTATAGAAGTATTGCATAG+AGG | 0.512721 | 4.4:-85421769 | None:intergenic |
| ACAAATGAGTAATTTGTCAA+AGG | 0.515839 | 4.4:-85422371 | None:intergenic |
| ACTCAAGTGTTGGATTCCAC+TGG | 0.532584 | 4.4:+85418542 | MS.gene052747:CDS |
| TTAACGATAATAAACAGAAA+AGG | 0.535318 | 4.4:+85422309 | MS.gene052747:CDS |
| ACAAGTCTAAGGATGTTTCT+CGG | 0.546217 | 4.4:-85418821 | None:intergenic |
| GCTCATGTTCCGGACATAGT+TGG | 0.547344 | 4.4:+85422059 | MS.gene052747:CDS |
| TACTTGGAAGTCACCAGAAG+AGG | 0.547711 | 4.4:+85418852 | MS.gene052747:CDS |
| TCAGATGCCAAACTCACCTA+TGG | 0.549356 | 4.4:+85418461 | MS.gene052747:CDS |
| TGTCAAACTCACTCAAGTGT+TGG | 0.553345 | 4.4:+85418532 | MS.gene052747:CDS |
| GGTTGCTCTACAAAACAAAT+GGG | 0.562695 | 4.4:+85421682 | MS.gene052747:intron |
| CAACAACGCAGCTGCGAACG+TGG | 0.566493 | 4.4:+85422394 | MS.gene052747:CDS |
| ATATCAAATATTTCTCAAGC+AGG | 0.571118 | 4.4:+85422019 | MS.gene052747:CDS |
| TTGGAAGTCACCAGAAGAGG+AGG | 0.590853 | 4.4:+85418855 | MS.gene052747:CDS |
| AGTTACACAGTTAGAGTCAC+CGG | 0.602563 | 4.4:-85422342 | None:intergenic |
| TTTCATGTAGCCATATGTGG+AGG | 0.619171 | 4.4:+85422244 | MS.gene052747:intron |
| ATTGGACACAACGTTACCAT+AGG | 0.622181 | 4.4:-85418477 | None:intergenic |
| AAGCATCAATAGCCATGCGT+AGG | 0.630888 | 4.4:-85422091 | None:intergenic |
| AACAACACAGAAACAATGGA+AGG | 0.643932 | 4.4:+85418407 | None:intergenic |
| AATGGAAGGCAACAACACTA+CGG | 0.644784 | 4.4:+85418421 | None:intergenic |
| AAAGATGAAGGAAACAAACA+AGG | 0.649227 | 4.4:+85422274 | MS.gene052747:CDS |
| TGACATGAGATTGAAGCCAG+TGG | 0.658000 | 4.4:-85418558 | None:intergenic |
| GAAAAGAAGAAACGACGAGG+TGG | 0.670689 | 4.4:+85421978 | MS.gene052747:CDS |
| AGTAAGTATCGAAATCAACT+GGG | 0.670714 | 4.4:-85422457 | None:intergenic |
| TTAGAGTCACCGGACAGACG+AGG | 0.678770 | 4.4:-85422332 | None:intergenic |
| AAAGAAAAGAAGAAACGACG+AGG | 0.791491 | 4.4:+85421975 | MS.gene052747:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATTATTTTTGAAGATT+TGG | - | chr4.4:85420717-85420736 | None:intergenic | 15.0% |
| !! | AATCATTATGTTATGAAACA+TGG | + | chr4.4:85419024-85419043 | MS.gene052747:intron | 20.0% |
| !! | AATTTATCTTGAATGTTTCA+AGG | + | chr4.4:85421661-85421680 | MS.gene052747:intron | 20.0% |
| !! | ATTAGAATTAAGAACAAACA+AGG | + | chr4.4:85421043-85421062 | MS.gene052747:intron | 20.0% |
| !! | CATGAAAAAGTAATTAGAAA+TGG | - | chr4.4:85422231-85422250 | None:intergenic | 20.0% |
| !! | TACAACAAATTAATAATACC+TGG | - | chr4.4:85418887-85418906 | None:intergenic | 20.0% |
| !! | TTAACGATAATAAACAGAAA+AGG | + | chr4.4:85422309-85422328 | MS.gene052747:CDS | 20.0% |
| !! | TTACACCTATATATACTAAT+AGG | + | chr4.4:85419143-85419162 | MS.gene052747:intron | 20.0% |
| !!! | AAAGCTTTTATTAAAGTGTA+TGG | - | chr4.4:85420140-85420159 | None:intergenic | 20.0% |
| !!! | AATGCATGTGTATATATTTT+AGG | + | chr4.4:85418931-85418950 | MS.gene052747:intron | 20.0% |
| !!! | GTAGTTTTGAAGTTTTTTTT+TGG | - | chr4.4:85420314-85420333 | None:intergenic | 20.0% |
| ! | AATATCAACAAAGCCAATTA+AGG | + | chr4.4:85419398-85419417 | MS.gene052747:intron | 25.0% |
| ! | AATTCAACACTAGGAATATA+TGG | + | chr4.4:85420473-85420492 | MS.gene052747:intron | 25.0% |
| ! | ACTTGAAATGAGAAAATACA+AGG | + | chr4.4:85419236-85419255 | MS.gene052747:intron | 25.0% |
| ! | ATATCAAATATTTCTCAAGC+AGG | + | chr4.4:85422019-85422038 | MS.gene052747:CDS | 25.0% |
| ! | ATTAGAGATACATAGTTACA+AGG | - | chr4.4:85419178-85419197 | None:intergenic | 25.0% |
| ! | ATTGCAAAACAAAATTGCAA+AGG | + | chr4.4:85421188-85421207 | MS.gene052747:intron | 25.0% |
| ! | ATTTGTAAACCCTAAGATTT+GGG | + | chr4.4:85421118-85421137 | MS.gene052747:intron | 25.0% |
| ! | CACACAAATTTAATCAAGAA+AGG | + | chr4.4:85418983-85419002 | MS.gene052747:intron | 25.0% |
| ! | CTAGTCCTATTAGTATATAT+AGG | - | chr4.4:85419151-85419170 | None:intergenic | 25.0% |
| ! | GCATATAAATAACCACAAAT+TGG | - | chr4.4:85421843-85421862 | None:intergenic | 25.0% |
| ! | TCTATTATGGTGATAATTGA+AGG | - | chr4.4:85419919-85419938 | None:intergenic | 25.0% |
| ! | TTAATTTACAACTCATGATC+CGG | + | chr4.4:85421941-85421960 | MS.gene052747:intron | 25.0% |
| ! | TTTCAAACAGAAATTACTTC+AGG | + | chr4.4:85419966-85419985 | MS.gene052747:intron | 25.0% |
| !! | ACAAATGAGTAATTTGTCAA+AGG | - | chr4.4:85422374-85422393 | None:intergenic | 25.0% |
| !! | ATATTCCTAGTGTTGAATTT+GGG | - | chr4.4:85420472-85420491 | None:intergenic | 25.0% |
| !! | TATATTCCTAGTGTTGAATT+TGG | - | chr4.4:85420473-85420492 | None:intergenic | 25.0% |
| !! | TTTTACAAGAGTTTACTATC+TGG | - | chr4.4:85420423-85420442 | None:intergenic | 25.0% |
| !!! | GGATATCATCATTGTTTTTT+TGG | - | chr4.4:85419494-85419513 | None:intergenic | 25.0% |
| !!! | TAATTGAAGGCTATTTTCTT+TGG | - | chr4.4:85419906-85419925 | None:intergenic | 25.0% |
| !!! | TATTTGTTATGCTTCATTCT+TGG | - | chr4.4:85419882-85419901 | None:intergenic | 25.0% |
| !!! | TGCTTGTTTTGAATGTTTTA+TGG | - | chr4.4:85420779-85420798 | None:intergenic | 25.0% |
| !!! | TGTATTTTCTCATTTCAAGT+TGG | - | chr4.4:85419236-85419255 | None:intergenic | 25.0% |
| AAAGATGAAGGAAACAAACA+AGG | + | chr4.4:85422274-85422293 | MS.gene052747:CDS | 30.0% | |
| AACAGAAAAATTGTTCAAGG+TGG | + | chr4.4:85421420-85421439 | MS.gene052747:intron | 30.0% | |
| ACATTACATGAATTTGTCTC+AGG | + | chr4.4:85421632-85421651 | MS.gene052747:intron | 30.0% | |
| AGAAAGAAAAAAACAGAGTG+AGG | + | chr4.4:85421349-85421368 | MS.gene052747:intron | 30.0% | |
| AGAAAGGTTTCATCTACTAT+AGG | + | chr4.4:85418999-85419018 | MS.gene052747:intron | 30.0% | |
| ATAGAATAGGTGATTACCAA+AGG | + | chr4.4:85420515-85420534 | MS.gene052747:intron | 30.0% | |
| ATATATGGTCTTTGTATGTG+GGG | - | chr4.4:85420380-85420399 | None:intergenic | 30.0% | |
| ATGCTTGATATGAAGATGTT+TGG | + | chr4.4:85421897-85421916 | MS.gene052747:intron | 30.0% | |
| ATTTCAAACAAACCAAGTAG+AGG | - | chr4.4:85422205-85422224 | None:intergenic | 30.0% | |
| CATATATGGTCTTTGTATGT+GGG | - | chr4.4:85420381-85420400 | None:intergenic | 30.0% | |
| CTTGGTTATTGATGAGTATT+TGG | - | chr4.4:85420336-85420355 | None:intergenic | 30.0% | |
| CTTGTTGAGTTTAATATGCA+GGG | + | chr4.4:85418683-85418702 | MS.gene052747:intron | 30.0% | |
| GAACTTAGATGTTGAATACA+TGG | - | chr4.4:85420241-85420260 | None:intergenic | 30.0% | |
| GATATCAAATCTTCAATTCG+AGG | - | chr4.4:85421017-85421036 | None:intergenic | 30.0% | |
| GATTTGTAAACCCTAAGATT+TGG | + | chr4.4:85421117-85421136 | MS.gene052747:intron | 30.0% | |
| TATAATGCTCACAAGATTCT+TGG | - | chr4.4:85420354-85420373 | None:intergenic | 30.0% | |
| TCTTGTTGAGTTTAATATGC+AGG | + | chr4.4:85418682-85418701 | MS.gene052747:intron | 30.0% | |
| TGAAACAAAGCAATAGAATC+AGG | + | chr4.4:85420919-85420938 | MS.gene052747:intron | 30.0% | |
| TGATACCATGTTATGAAACA+TGG | + | chr4.4:85421458-85421477 | MS.gene052747:intron | 30.0% | |
| TGCAACAGAAAAATTGTTCA+AGG | + | chr4.4:85421417-85421436 | MS.gene052747:intron | 30.0% | |
| TTATGGAGAATTCTTGATTC+TGG | - | chr4.4:85420762-85420781 | None:intergenic | 30.0% | |
| TTTGAGAAATTGTACTTCTC+TGG | + | chr4.4:85421794-85421813 | MS.gene052747:CDS | 30.0% | |
| TTTGCATGCATTCAAAATCA+AGG | + | chr4.4:85418620-85418639 | MS.gene052747:intron | 30.0% | |
| TTTGTAAACCCTAAGATTTG+GGG | + | chr4.4:85421119-85421138 | MS.gene052747:intron | 30.0% | |
| ! | ACATTTTTACCAACTATGTC+CGG | - | chr4.4:85422071-85422090 | None:intergenic | 30.0% |
| ! | ATCTTTTTCCCCAAATCTTA+GGG | - | chr4.4:85421130-85421149 | None:intergenic | 30.0% |
| ! | GTTGCAATTTTCTGCATATA+TGG | - | chr4.4:85420395-85420414 | None:intergenic | 30.0% |
| ! | TATTCCTAGTGTTGAATTTG+GGG | - | chr4.4:85420471-85420490 | None:intergenic | 30.0% |
| ! | TGAACAAGGCAATTTTATCA+TGG | - | chr4.4:85420054-85420073 | None:intergenic | 30.0% |
| ! | TTTTCACTGTCATATATGTG+AGG | - | chr4.4:85420625-85420644 | None:intergenic | 30.0% |
| !! | ACTGTTTTTCCCAAATCATA+GGG | - | chr4.4:85421236-85421255 | None:intergenic | 30.0% |
| !! | AGCTTTTGAAAAAATGCCTT+AGG | + | chr4.4:85420154-85420173 | MS.gene052747:intron | 30.0% |
| !! | AGTAAGTATCGAAATCAACT+GGG | - | chr4.4:85422460-85422479 | None:intergenic | 30.0% |
| !! | TATGCATCTTTGAAGTTGTT+TGG | - | chr4.4:85420446-85420465 | None:intergenic | 30.0% |
| !! | TGTATAGAAGTATTGCATAG+AGG | - | chr4.4:85421772-85421791 | None:intergenic | 30.0% |
| !! | TTGTTGATATTGACTTCTAC+CGG | - | chr4.4:85419389-85419408 | None:intergenic | 30.0% |
| !!! | CAACATGGTTTTGTTTTCTA+TGG | - | chr4.4:85419823-85419842 | None:intergenic | 30.0% |
| !!! | CTTTTGGTTTTTTCTTGTCT+CGG | - | chr4.4:85419759-85419778 | None:intergenic | 30.0% |
| !!! | TTGATTCTGGAAGTTTTAGA+TGG | - | chr4.4:85420749-85420768 | None:intergenic | 30.0% |
| AAAAGAGAGAGAGAAAACGA+TGG | + | chr4.4:85421306-85421325 | MS.gene052747:intron | 35.0% | |
| AAAATACAAGGAAAGATGCC+GGG | + | chr4.4:85419248-85419267 | MS.gene052747:intron | 35.0% | |
| AAAGAAAAGAAGAAACGACG+AGG | + | chr4.4:85421975-85421994 | MS.gene052747:CDS | 35.0% | |
| AAATCTTCAATTCGAGGAGT+CGG | - | chr4.4:85421011-85421030 | None:intergenic | 35.0% | |
| AACAAGGATCAAAGTTCCAA+CGG | + | chr4.4:85420288-85420307 | MS.gene052747:intron | 35.0% | |
| ACAAACCAGAAGCAAACAAT+AGG | + | chr4.4:85419938-85419957 | MS.gene052747:intron | 35.0% | |
| ACAAGGATAGTTGAACTGAA+AGG | + | chr4.4:85421060-85421079 | MS.gene052747:intron | 35.0% | |
| ACAAGTCTAAGGATGTTTCT+CGG | - | chr4.4:85418824-85418843 | None:intergenic | 35.0% | |
| ACATGGTATCAGAGCAAATA+TGG | - | chr4.4:85421449-85421468 | None:intergenic | 35.0% | |
| ACTGTCATATATGTGAGGAT+GGG | - | chr4.4:85420620-85420639 | None:intergenic | 35.0% | |
| AGACTTGTATCTGCTTTACT+TGG | + | chr4.4:85418836-85418855 | MS.gene052747:CDS | 35.0% | |
| AGCACAAGACAAGAAATACA+AGG | + | chr4.4:85419464-85419483 | MS.gene052747:intron | 35.0% | |
| AGGTTGCTCTACAAAACAAA+TGG | + | chr4.4:85421681-85421700 | MS.gene052747:intron | 35.0% | |
| AGTTTGACATAGAAGTCATC+AGG | - | chr4.4:85418521-85418540 | None:intergenic | 35.0% | |
| ATCGAAATCAACTGGGAAAA+AGG | - | chr4.4:85422453-85422472 | None:intergenic | 35.0% | |
| GAAAATACAAGGAAAGATGC+CGG | + | chr4.4:85419247-85419266 | MS.gene052747:intron | 35.0% | |
| GACAAGAAAAACCAAATGCA+AGG | + | chr4.4:85419616-85419635 | MS.gene052747:intron | 35.0% | |
| GAGAGCAATGACAATAGAAT+AGG | + | chr4.4:85420502-85420521 | MS.gene052747:intron | 35.0% | |
| GCATATATGGTCTTTGTATG+TGG | - | chr4.4:85420382-85420401 | None:intergenic | 35.0% | |
| GGTTGCTCTACAAAACAAAT+GGG | + | chr4.4:85421682-85421701 | MS.gene052747:intron | 35.0% | |
| GTAAAGCAGATACAAGTCTA+AGG | - | chr4.4:85418835-85418854 | None:intergenic | 35.0% | |
| GTATCTAAGAGACCAATTTG+TGG | + | chr4.4:85421828-85421847 | MS.gene052747:intron | 35.0% | |
| GTGTATGGTGTAAGATTGAA+AGG | - | chr4.4:85420125-85420144 | None:intergenic | 35.0% | |
| TATTCCCCAAATTCAACACT+AGG | + | chr4.4:85420464-85420483 | MS.gene052747:intron | 35.0% | |
| TCGAAATCAACTGGGAAAAA+GGG | - | chr4.4:85422452-85422471 | None:intergenic | 35.0% | |
| TCGATTAAAAGCTCATGTTC+CGG | + | chr4.4:85422049-85422068 | MS.gene052747:CDS | 35.0% | |
| TCTTTGCAATTGTGCTCTAT+TGG | - | chr4.4:85420655-85420674 | None:intergenic | 35.0% | |
| TGGATGCTTATTCCTTCAAT+TGG | - | chr4.4:85419347-85419366 | None:intergenic | 35.0% | |
| TGGTTTGAAGACATATCACA+TGG | - | chr4.4:85419803-85419822 | None:intergenic | 35.0% | |
| TGTTTGATGAAAGTCCTCAT+TGG | - | chr4.4:85420841-85420860 | None:intergenic | 35.0% | |
| TTGATGCAACTTCAAACCAT+AGG | + | chr4.4:85419840-85419859 | MS.gene052747:intron | 35.0% | |
| TTGGACTACTTTGATTCTTG+CGG | - | chr4.4:85420888-85420907 | None:intergenic | 35.0% | |
| TTGTTTCACTGTTTGATGCT+TGG | - | chr4.4:85420907-85420926 | None:intergenic | 35.0% | |
| TTTATGTAGCAGTGTAGTTC+TGG | - | chr4.4:85420217-85420236 | None:intergenic | 35.0% | |
| ! | AGAAGTGTATTGTTTCCCAT+TGG | - | chr4.4:85418498-85418517 | None:intergenic | 35.0% |
| ! | ATTGGTCTCTTAGATACCTT+TGG | - | chr4.4:85421825-85421844 | None:intergenic | 35.0% |
| ! | CTTCCTTCACAATTGGTAAT+GGG | - | chr4.4:85420022-85420041 | None:intergenic | 35.0% |
| ! | CTTTTACTATTGTGCTCACA+AGG | - | chr4.4:85420864-85420883 | None:intergenic | 35.0% |
| ! | GATATCCAAAAAGAAGTGCA+AGG | + | chr4.4:85419507-85419526 | MS.gene052747:intron | 35.0% |
| ! | GATCTTTTTCCCCAAATCTT+AGG | - | chr4.4:85421131-85421150 | None:intergenic | 35.0% |
| ! | TTTTCTTTGCCATCTATGTC+CGG | - | chr4.4:85421963-85421982 | None:intergenic | 35.0% |
| ! | TTTTTGCTTTCCTCCACATA+TGG | - | chr4.4:85422257-85422276 | None:intergenic | 35.0% |
| !! | AGAATGATTGGTGTTGTGTT+CGG | - | chr4.4:85420817-85420836 | None:intergenic | 35.0% |
| !! | CACTGTTTTTCCCAAATCAT+AGG | - | chr4.4:85421237-85421256 | None:intergenic | 35.0% |
| !! | CACTTTTATCTTTGGAAGCT+TGG | - | chr4.4:85419718-85419737 | None:intergenic | 35.0% |
| !! | CAGTAAGTATCGAAATCAAC+TGG | - | chr4.4:85422461-85422480 | None:intergenic | 35.0% |
| !! | CTTTTTCATGTAGCCATATG+TGG | + | chr4.4:85422241-85422260 | MS.gene052747:intron | 35.0% |
| !! | TGCTTCTGGTTTGTCTATTA+TGG | - | chr4.4:85419932-85419951 | None:intergenic | 35.0% |
| !! | TTGTTGCTTCATGGTACTTT+TGG | - | chr4.4:85419693-85419712 | None:intergenic | 35.0% |
| !! | TTTTGCAATTAGCCTCTACT+TGG | + | chr4.4:85422190-85422209 | MS.gene052747:intron | 35.0% |
| !!! | AAGGGCATCACTTTTATCTT+TGG | - | chr4.4:85419581-85419600 | None:intergenic | 35.0% |
| !!! | CACTTTTATCTTTGGAACCT+TGG | - | chr4.4:85419573-85419592 | None:intergenic | 35.0% |
| !!! | GCATTTGGTTTTTCTTGTCT+CGG | - | chr4.4:85419615-85419634 | None:intergenic | 35.0% |
| !!! | TGAAGTTTTTTTTTGGCCGT+TGG | - | chr4.4:85420307-85420326 | None:intergenic | 35.0% |
| !!! | TGATATCCACTTTTTCCAGT+TGG | - | chr4.4:85422005-85422024 | None:intergenic | 35.0% |
| !!! | TTCTTGGAAGCATTGGTTTT+TGG | - | chr4.4:85419866-85419885 | None:intergenic | 35.0% |
| !!! | TTTTTTAGCCGATGTATTCC+CGG | - | chr4.4:85419269-85419288 | None:intergenic | 35.0% |
| AACATGGCATCCATTGATGA+AGG | + | chr4.4:85419040-85419059 | MS.gene052747:intron | 40.0% | |
| AACGTTACCATAGGTGAGTT+TGG | - | chr4.4:85418471-85418490 | None:intergenic | 40.0% | |
| AACTGCAGAGACAATATTGC+CGG | + | chr4.4:85420541-85420560 | MS.gene052747:intron | 40.0% | |
| AAGCCCATTACCAATTGTGA+AGG | + | chr4.4:85420016-85420035 | MS.gene052747:intron | 40.0% | |
| ACATGGCTATGCATCTCTAT+TGG | - | chr4.4:85419786-85419805 | None:intergenic | 40.0% | |
| ACTATAGGCACTAACCAACA+AGG | + | chr4.4:85420272-85420291 | MS.gene052747:intron | 40.0% | |
| AGAGAGTTAACCCACTTATG+GGG | + | chr4.4:85419117-85419136 | MS.gene052747:intron | 40.0% | |
| AGGAACAGAACCCTATGATT+TGG | + | chr4.4:85421223-85421242 | MS.gene052747:intron | 40.0% | |
| AGTACTCAGTGAAGAGAAGA+TGG | + | chr4.4:85420945-85420964 | MS.gene052747:intron | 40.0% | |
| AGTTACACAGTTAGAGTCAC+CGG | - | chr4.4:85422345-85422364 | None:intergenic | 40.0% | |
| ATCTTCTCTTCACTGAGTAC+TGG | - | chr4.4:85420946-85420965 | None:intergenic | 40.0% | |
| ATTGGACACAACGTTACCAT+AGG | - | chr4.4:85418480-85418499 | None:intergenic | 40.0% | |
| CACCAATCATTCTTCCAATG+AGG | + | chr4.4:85420824-85420843 | MS.gene052747:intron | 40.0% | |
| CACTGTCATATATGTGAGGA+TGG | - | chr4.4:85420621-85420640 | None:intergenic | 40.0% | |
| CCATAATCAACAATGGAAGG+AGG | + | chr4.4:85419644-85419663 | MS.gene052747:intron | 40.0% | |
| CTCAAGGTTGAACCAATTGA+AGG | + | chr4.4:85419332-85419351 | MS.gene052747:intron | 40.0% | |
| GAGAGAGTTAACCCACTTAT+GGG | + | chr4.4:85419116-85419135 | MS.gene052747:intron | 40.0% | |
| GAGCCATAATCAACAATGGA+AGG | + | chr4.4:85419641-85419660 | MS.gene052747:intron | 40.0% | |
| GAGTGATTGAACACTCTTGA+TGG | - | chr4.4:85419436-85419455 | None:intergenic | 40.0% | |
| GATGGGAGTCAATATCTATG+TGG | - | chr4.4:85420603-85420622 | None:intergenic | 40.0% | |
| GCTTCCTTCACAATTGGTAA+TGG | - | chr4.4:85420023-85420042 | None:intergenic | 40.0% | |
| GGAACAGAACCCTATGATTT+GGG | + | chr4.4:85421224-85421243 | MS.gene052747:intron | 40.0% | |
| GGAAGAGCCATAATCAACAA+TGG | + | chr4.4:85419637-85419656 | MS.gene052747:intron | 40.0% | |
| GGAATTCTCAACTAGCTGAA+TGG | + | chr4.4:85419987-85420006 | MS.gene052747:intron | 40.0% | |
| GGAGGAAAGCAAAAAGATGA+AGG | + | chr4.4:85422262-85422281 | MS.gene052747:CDS | 40.0% | |
| GGATGCCATGTTTCATAACA+TGG | - | chr4.4:85419032-85419051 | None:intergenic | 40.0% | |
| GTCCTCATTGGAAGAATGAT+TGG | - | chr4.4:85420829-85420848 | None:intergenic | 40.0% | |
| GTTGGAACTTTGATCCTTGT+TGG | - | chr4.4:85420289-85420308 | None:intergenic | 40.0% | |
| TCAACATCTAAGTTCACGTG+AGG | + | chr4.4:85420246-85420265 | MS.gene052747:intron | 40.0% | |
| TGAGAGAGTTAACCCACTTA+TGG | + | chr4.4:85419115-85419134 | MS.gene052747:intron | 40.0% | |
| TGGTAAAAATGTCCTACGCA+TGG | + | chr4.4:85422079-85422098 | MS.gene052747:CDS | 40.0% | |
| TGTCAAACTCACTCAAGTGT+TGG | + | chr4.4:85418532-85418551 | MS.gene052747:CDS | 40.0% | |
| TTATGGCTCTTCCTTGCATT+TGG | - | chr4.4:85419630-85419649 | None:intergenic | 40.0% | |
| TTCAGCCTATTGTTTGCTTC+TGG | - | chr4.4:85419946-85419965 | None:intergenic | 40.0% | |
| TTGAACACCTTCCAACTTGA+GGG | - | chr4.4:85419206-85419225 | None:intergenic | 40.0% | |
| TTTCATGTAGCCATATGTGG+AGG | + | chr4.4:85422244-85422263 | MS.gene052747:intron | 40.0% | |
| TTTGAACACCTTCCAACTTG+AGG | - | chr4.4:85419207-85419226 | None:intergenic | 40.0% | |
| ! | ATGGTAACGTTGTGTCCAAT+GGG | + | chr4.4:85418480-85418499 | MS.gene052747:CDS | 40.0% |
| ! | ATTGGTTCAACCTTGAGTTG+TGG | - | chr4.4:85419329-85419348 | None:intergenic | 40.0% |
| ! | CCTCCTTCCATTGTTGATTA+TGG | - | chr4.4:85419647-85419666 | None:intergenic | 40.0% |
| ! | CTCTTCCTTGCACTTCTTTT+TGG | - | chr4.4:85419515-85419534 | None:intergenic | 40.0% |
| ! | GCTTTTCTCTCCTTCATCAA+TGG | - | chr4.4:85419053-85419072 | None:intergenic | 40.0% |
| ! | GGTTTGAAGTTGCATCAACA+TGG | - | chr4.4:85419838-85419857 | None:intergenic | 40.0% |
| ! | GTTAAGCGTTGTGCCTTAAT+TGG | - | chr4.4:85419414-85419433 | None:intergenic | 40.0% |
| ! | TATGGTAACGTTGTGTCCAA+TGG | + | chr4.4:85418479-85418498 | MS.gene052747:CDS | 40.0% |
| ! | TGCTTCATTCTTGGAAGCAT+TGG | - | chr4.4:85419873-85419892 | None:intergenic | 40.0% |
| !! | CTATGTGGCTTTGTTGAACA+AGG | - | chr4.4:85420068-85420087 | None:intergenic | 40.0% |
| !! | GTTTTAGCCATCCATCATTG+TGG | - | chr4.4:85420181-85420200 | None:intergenic | 40.0% |
| !! | TGATATTGACTTCTACCGGA+TGG | - | chr4.4:85419385-85419404 | None:intergenic | 40.0% |
| !!! | AAGCATTGGTTTTTGGCCTA+TGG | - | chr4.4:85419859-85419878 | None:intergenic | 40.0% |
| !!! | CATCTCTATTGGCTTGCTTT+TGG | - | chr4.4:85419775-85419794 | None:intergenic | 40.0% |
| !!! | GAGGGCATCACTTTTATCTT+TGG | - | chr4.4:85419726-85419745 | None:intergenic | 40.0% |
| AAGCATCAATAGCCATGCGT+AGG | - | chr4.4:85422094-85422113 | None:intergenic | 45.0% | |
| ACTCATGATCCGGACATAGA+TGG | + | chr4.4:85421951-85421970 | MS.gene052747:intron | 45.0% | |
| ATGCCTTAGGTCCACAATGA+TGG | + | chr4.4:85420167-85420186 | MS.gene052747:intron | 45.0% | |
| CAAGAAGCAACCACAACTCA+AGG | + | chr4.4:85419316-85419335 | MS.gene052747:intron | 45.0% | |
| CACATAGCCTTCAAGTGCAT+AGG | + | chr4.4:85420081-85420100 | MS.gene052747:intron | 45.0% | |
| CATCCATCATTGTGGACCTA+AGG | - | chr4.4:85420173-85420192 | None:intergenic | 45.0% | |
| CCATAGTCTACAATGGAAGG+AGG | + | chr4.4:85419535-85419554 | MS.gene052747:intron | 45.0% | |
| CCTCCTTCCATTGTAGACTA+TGG | - | chr4.4:85419538-85419557 | None:intergenic | 45.0% | |
| CTATGCACTTGAAGGCTATG+TGG | - | chr4.4:85420083-85420102 | None:intergenic | 45.0% | |
| GAAAAGAAGAAACGACGAGG+TGG | + | chr4.4:85421978-85421997 | MS.gene052747:CDS | 45.0% | |
| GAAAGATGCCGGGAATACAT+CGG | + | chr4.4:85419258-85419277 | MS.gene052747:intron | 45.0% | |
| GAGCCATAGTCTACAATGGA+AGG | + | chr4.4:85419532-85419551 | MS.gene052747:intron | 45.0% | |
| GAGTTGTGGTTGCTTCTTGT+TGG | - | chr4.4:85419315-85419334 | None:intergenic | 45.0% | |
| GCATGTGCTTCCTTCACAAT+TGG | - | chr4.4:85420029-85420048 | None:intergenic | 45.0% | |
| GGAAGAGCCATAGTCTACAA+TGG | + | chr4.4:85419528-85419547 | MS.gene052747:intron | 45.0% | |
| GGAGGTCATATACAAGACCA+AGG | + | chr4.4:85419553-85419572 | MS.gene052747:intron | 45.0% | |
| GTCTCTGCACTGAAACTAGA+AGG | + | chr4.4:85421713-85421732 | MS.gene052747:CDS | 45.0% | |
| GTTCACGTGAGGTTCACTAT+AGG | + | chr4.4:85420257-85420276 | MS.gene052747:intron | 45.0% | |
| TACGCATGGCTATTGATGCT+TGG | + | chr4.4:85422093-85422112 | MS.gene052747:CDS | 45.0% | |
| TACTTGGAAGTCACCAGAAG+AGG | + | chr4.4:85418852-85418871 | MS.gene052747:CDS | 45.0% | |
| TCAGATGCCAAACTCACCTA+TGG | + | chr4.4:85418461-85418480 | MS.gene052747:CDS | 45.0% | |
| TCTAATAGTCCCCCTCAAGT+TGG | + | chr4.4:85419192-85419211 | MS.gene052747:intron | 45.0% | |
| TCTCTCTCCTATGCACTTGA+AGG | - | chr4.4:85420091-85420110 | None:intergenic | 45.0% | |
| TGAACACCTTCCAACTTGAG+GGG | - | chr4.4:85419205-85419224 | None:intergenic | 45.0% | |
| TGACATGAGATTGAAGCCAG+TGG | - | chr4.4:85418561-85418580 | None:intergenic | 45.0% | |
| ! | CTTAGGTCCACAATGATGGA+TGG | + | chr4.4:85420171-85420190 | MS.gene052747:intron | 45.0% |
| ! | TGGTTTTTCTTGTCTCGGCT+CGG | - | chr4.4:85419610-85419629 | None:intergenic | 45.0% |
| !! | ACTCAAGTGTTGGATTCCAC+TGG | + | chr4.4:85418542-85418561 | MS.gene052747:CDS | 45.0% |
| !! | AGCTTGGTCTTGTTGCTTCA+TGG | - | chr4.4:85419702-85419721 | None:intergenic | 45.0% |
| !! | TATTGACTTCTACCGGATGG+TGG | - | chr4.4:85419382-85419401 | None:intergenic | 45.0% |
| !!! | GGTTTTTTCTTGTCTCGGCT+TGG | - | chr4.4:85419754-85419773 | None:intergenic | 45.0% |
| !!! | TATTATATATCATTTTTATT+TGG | + | chr4.4:85418733-85418752 | MS.gene052747:intron | 5.0% |
| AGCAACGCTTAACCACCATC+CGG | + | chr4.4:85419367-85419386 | MS.gene052747:intron | 50.0% | |
| AGGTGTAACCTCCCCATAAG+TGG | - | chr4.4:85419131-85419150 | None:intergenic | 50.0% | |
| CTGGTGAAAACCTCCTCTTC+TGG | - | chr4.4:85418868-85418887 | None:intergenic | 50.0% | |
| GAACACCTTCCAACTTGAGG+GGG | - | chr4.4:85419204-85419223 | None:intergenic | 50.0% | |
| GAGTTAACCCACTTATGGGG+AGG | + | chr4.4:85419120-85419139 | MS.gene052747:intron | 50.0% | |
| GATGTCTGTCGACGCTAAAC+AGG | + | chr4.4:85422121-85422140 | MS.gene052747:CDS | 50.0% | |
| GCTCATGTTCCGGACATAGT+TGG | + | chr4.4:85422059-85422078 | MS.gene052747:CDS | 50.0% | |
| GGTGGTCCAACTGGAAAAAG+TGG | + | chr4.4:85421996-85422015 | MS.gene052747:CDS | 50.0% | |
| GGTGTAACCTCCCCATAAGT+GGG | - | chr4.4:85419130-85419149 | None:intergenic | 50.0% | |
| TACTTCTCTGGCAGCTCCAA+AGG | + | chr4.4:85421806-85421825 | MS.gene052747:CDS | 50.0% | |
| TGCAAAGGAAATCACACGCG+AGG | + | chr4.4:85421203-85421222 | MS.gene052747:intron | 50.0% | |
| TGTCTCTGCAGTTCAGCCTT+TGG | - | chr4.4:85420534-85420553 | None:intergenic | 50.0% | |
| TTGGAAGTCACCAGAAGAGG+AGG | + | chr4.4:85418855-85418874 | MS.gene052747:CDS | 50.0% | |
| ! | CAGAAGAGGAGGTTTTCACC+AGG | + | chr4.4:85418866-85418885 | MS.gene052747:CDS | 50.0% |
| ! | GATGGTGGTTAAGCGTTGCT+TGG | - | chr4.4:85419367-85419386 | None:intergenic | 50.0% |
| ! | TGTGTTCGGTTTGACAGTGC+AGG | - | chr4.4:85420803-85420822 | None:intergenic | 50.0% |
| !! | ATAGTCCCCCTCAAGTTGGA+AGG | + | chr4.4:85419196-85419215 | MS.gene052747:intron | 50.0% |
| !! | TTCTTGTCTCGGCTTGGCAT+AGG | - | chr4.4:85419748-85419767 | None:intergenic | 50.0% |
| AAACGACGAGGTGGTCCAAC+TGG | + | chr4.4:85421987-85422006 | MS.gene052747:CDS | 55.0% | |
| CAGAAAAGGCCTCGTCTGTC+CGG | + | chr4.4:85422323-85422342 | MS.gene052747:CDS | 55.0% | |
| CGGCAACTAGAGCTTCACAG+CGG | + | chr4.4:85420561-85420580 | MS.gene052747:intron | 55.0% | |
| TTAGAGTCACCGGACAGACG+AGG | - | chr4.4:85422335-85422354 | None:intergenic | 55.0% | |
| ! | CGCTGTGAAGCTCTAGTTGC+CGG | - | chr4.4:85420563-85420582 | None:intergenic | 55.0% |
| !! | TGTCTCGGCTTGGCATAGGA+GGG | - | chr4.4:85419744-85419763 | None:intergenic | 55.0% |
| !! | TTCTTGTCTCGGCTCGGCAT+TGG | - | chr4.4:85419604-85419623 | None:intergenic | 55.0% |
| !! | TTGTCTCGGCTTGGCATAGG+AGG | - | chr4.4:85419745-85419764 | None:intergenic | 55.0% |
| CAACAACGCAGCTGCGAACG+TGG | + | chr4.4:85422394-85422413 | MS.gene052747:CDS | 60.0% | |
| !! | GTCTCGGCTCGGCATTGGAA+GGG | - | chr4.4:85419599-85419618 | None:intergenic | 60.0% |
| !! | TGTCTCGGCTCGGCATTGGA+AGG | - | chr4.4:85419600-85419619 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 85418422 | 85422481 | 85418422 | ID=MS.gene052747 |
| chr4.4 | mRNA | 85418422 | 85422481 | 85418422 | ID=MS.gene052747.t1;Parent=MS.gene052747 |
| chr4.4 | exon | 85418422 | 85418576 | 85418422 | ID=MS.gene052747.t1.exon1;Parent=MS.gene052747.t1 |
| chr4.4 | CDS | 85418422 | 85418576 | 85418422 | ID=cds.MS.gene052747.t1;Parent=MS.gene052747.t1 |
| chr4.4 | exon | 85418812 | 85418887 | 85418812 | ID=MS.gene052747.t1.exon2;Parent=MS.gene052747.t1 |
| chr4.4 | CDS | 85418812 | 85418887 | 85418812 | ID=cds.MS.gene052747.t1;Parent=MS.gene052747.t1 |
| chr4.4 | exon | 85421683 | 85421827 | 85421683 | ID=MS.gene052747.t1.exon3;Parent=MS.gene052747.t1 |
| chr4.4 | CDS | 85421683 | 85421827 | 85421683 | ID=cds.MS.gene052747.t1;Parent=MS.gene052747.t1 |
| chr4.4 | exon | 85421970 | 85422142 | 85421970 | ID=MS.gene052747.t1.exon4;Parent=MS.gene052747.t1 |
| chr4.4 | CDS | 85421970 | 85422142 | 85421970 | ID=cds.MS.gene052747.t1;Parent=MS.gene052747.t1 |
| chr4.4 | exon | 85422254 | 85422481 | 85422254 | ID=MS.gene052747.t1.exon5;Parent=MS.gene052747.t1 |
| chr4.4 | CDS | 85422254 | 85422481 | 85422254 | ID=cds.MS.gene052747.t1;Parent=MS.gene052747.t1 |
| Gene Sequence |
| Protein sequence |
