Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052748.t1 | XP_024639183.1 | 49.1 | 232 | 87 | 7 | 30 | 255 | 193 | 399 | 9.80E-41 | 177.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052748.t1 | G7KBS3 | 49.1 | 232 | 87 | 7 | 30 | 255 | 195 | 401 | 7.1e-41 | 177.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052748.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052748.t1 | MTR_5g080030 | 51.293 | 232 | 82 | 7 | 30 | 255 | 195 | 401 | 7.75e-59 | 192 |
| MS.gene052748.t1 | MTR_5g080030 | 38.756 | 209 | 82 | 6 | 2 | 206 | 110 | 276 | 4.38e-27 | 108 |
| MS.gene052748.t1 | MTR_5g080030 | 51.724 | 87 | 29 | 4 | 28 | 113 | 269 | 343 | 1.49e-11 | 63.9 |
| MS.gene052748.t1 | MTR_1g084150 | 55.625 | 160 | 36 | 2 | 130 | 255 | 64 | 222 | 6.08e-54 | 174 |
| MS.gene052748.t1 | MTR_4g015240 | 93.750 | 64 | 4 | 0 | 192 | 255 | 37 | 100 | 1.39e-37 | 128 |
| MS.gene052748.t1 | MTR_5g095070 | 39.556 | 225 | 70 | 7 | 2 | 212 | 98 | 270 | 1.93e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCTTCCCTGTTGATTT+CGG | 0.293366 | 4.4:+85436680 | MS.gene052748:CDS |
| GCTCATGATCCGAACATAAA+TGG | 0.302075 | 4.4:+85436307 | MS.gene052748:CDS |
| ACAAAAGAGTAATTTGTTAG+AGG | 0.335421 | 4.4:-85436602 | None:intergenic |
| GATGTCTGTCATTGATAAAC+AGG | 0.358571 | 4.4:+85433166 | MS.gene052748:CDS |
| CAGTAAGTACCGAAATCAAC+AGG | 0.378341 | 4.4:-85436689 | None:intergenic |
| TTTGAGAAATTGTACTTCTC+TGG | 0.396109 | 4.4:+85432809 | MS.gene052748:CDS |
| AAACGACGAGGTGGTCCAAC+TGG | 0.405430 | 4.4:+85433002 | MS.gene052748:CDS |
| GATGTCTGTCGAGGATAAAC+AGG | 0.416822 | 4.4:+85436369 | MS.gene052748:CDS |
| GGAGGAAAGCAAAAGGATAA+AGG | 0.432172 | 4.4:+85436493 | MS.gene052748:CDS |
| CAGAAGAGGCCTCGTGTGTC+CGG | 0.436103 | 4.4:+85436554 | MS.gene052748:CDS |
| ACCGAAATCAACAGGGAAGA+AGG | 0.480047 | 4.4:-85436681 | None:intergenic |
| TACCCATGGCTATTGATGCT+TGG | 0.495398 | 4.4:+85436341 | MS.gene052748:CDS |
| TACTTCTCTGGCAGCTCCAA+AGG | 0.496952 | 4.4:+85432821 | MS.gene052748:CDS |
| TAGAGGATTTCAACTTGAGC+AGG | 0.506834 | 4.4:-85432767 | None:intergenic |
| AAGCGGCGAGGTGCTCCAAC+GGG | 0.511465 | 4.4:+85436235 | MS.gene052748:CDS |
| TGTATAGAAGTATTGCATAG+AGG | 0.512721 | 4.4:-85432784 | None:intergenic |
| ATCGAGCACATTCCTGCTTG+AGG | 0.522606 | 4.4:-85436279 | None:intergenic |
| CATATGTGGAGGAAAGCAAA+AGG | 0.530288 | 4.4:+85436486 | MS.gene052748:CDS |
| GAAGCGGCGAGGTGCTCCAA+CGG | 0.536564 | 4.4:+85436234 | MS.gene052748:CDS |
| GCTCGTGATCCAGACATAGT+TGG | 0.550004 | 4.4:+85433104 | MS.gene052748:CDS |
| ATTCCAAGCATCAATAGCCA+TGG | 0.555218 | 4.4:-85436344 | None:intergenic |
| CCGAAATCAACAGGGAAGAA+GGG | 0.566882 | 4.4:-85436680 | None:intergenic |
| TGGATATCAAATATTCCTCA+AGG | 0.575170 | 4.4:+85433031 | MS.gene052748:CDS |
| ATCGAGCGCATTCCTCCTTG+AGG | 0.581377 | 4.4:-85433076 | None:intergenic |
| ATATCAAATATTCCTCAAGC+AGG | 0.584597 | 4.4:+85436267 | MS.gene052748:CDS |
| ACTTACACAGTTAGAGTCAC+CGG | 0.586551 | 4.4:-85436573 | None:intergenic |
| TTAACGACAATAAACAGAAG+AGG | 0.593556 | 4.4:+85436540 | MS.gene052748:CDS |
| TGATCCGGACATAGATGGCA+AGG | 0.607628 | 4.4:+85432971 | MS.gene052748:intron |
| AAGGCAAAGAAAAGAAGAAG+CGG | 0.611934 | 4.4:+85436218 | MS.gene052748:CDS |
| TTCCAAGCATCAATAGCCAT+GGG | 0.616814 | 4.4:-85436343 | None:intergenic |
| TTTCATGTAGCCATATGTGG+AGG | 0.619171 | 4.4:+85433292 | MS.gene052748:intron |
| TTTCATGTAGCCATATGTGG+AGG | 0.619171 | 4.4:+85436475 | MS.gene052748:intron |
| TGGCGAAAATGTCCTACCCA+TGG | 0.624736 | 4.4:+85436327 | MS.gene052748:CDS |
| AAGCATCAATAGCCATGGGT+AGG | 0.627717 | 4.4:-85436339 | None:intergenic |
| ACACATCAATAGCCATGTGT+AGG | 0.633346 | 4.4:-85433136 | None:intergenic |
| AAAGATGAAGGAAACAAACA+AGG | 0.649227 | 4.4:+85433322 | MS.gene052748:CDS |
| AAAGAAAAGAAGAAGCGGCG+AGG | 0.652530 | 4.4:+85436223 | MS.gene052748:CDS |
| TACACATGGCTATTGATGTG+TGG | 0.660328 | 4.4:+85433138 | MS.gene052748:CDS |
| TTGGAATAAGATGTCTGTCG+AGG | 0.669566 | 4.4:+85436360 | MS.gene052748:CDS |
| GAAAAGAAGAAACGACGAGG+TGG | 0.670689 | 4.4:+85432993 | MS.gene052748:CDS |
| AAGGATAAAGGAAACAAACA+AGG | 0.673108 | 4.4:+85436505 | MS.gene052748:CDS |
| AGTAAGTACCGAAATCAACA+GGG | 0.678049 | 4.4:-85436688 | None:intergenic |
| TTAGAGTCACCGGACACACG+AGG | 0.692166 | 4.4:-85436563 | None:intergenic |
| AAGGAAAAGAAGAAACGACG+AGG | 0.791491 | 4.4:+85432990 | MS.gene052748:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTTATAGTTATATATA+TGG | - | chr4.4:85433797-85433816 | None:intergenic | 10.0% |
| !! | ATACAATATCATAAAATAAT+AGG | - | chr4.4:85435742-85435761 | None:intergenic | 10.0% |
| !!! | AATATTTAGTTTCAAAATAT+GGG | + | chr4.4:85434892-85434911 | MS.gene052748:intron | 10.0% |
| !! | AAAAAAAAAAAAATTCCTCA+AGG | + | chr4.4:85433061-85433080 | MS.gene052748:CDS | 15.0% |
| !! | AAATTTATTTCATTCTTGAT+TGG | - | chr4.4:85434021-85434040 | None:intergenic | 15.0% |
| !! | AATTTATTTCATTCTTGATT+GGG | - | chr4.4:85434020-85434039 | None:intergenic | 15.0% |
| !! | ACAATATCTAATTAAAACTA+GGG | + | chr4.4:85434716-85434735 | MS.gene052748:intron | 15.0% |
| !! | TACAATATCTAATTAAAACT+AGG | + | chr4.4:85434715-85434734 | MS.gene052748:intron | 15.0% |
| !!! | ATTTTTCTTAACTTTGAAAA+AGG | + | chr4.4:85434678-85434697 | MS.gene052748:intron | 15.0% |
| !!! | GAATATTTAGTTTCAAAATA+TGG | + | chr4.4:85434891-85434910 | MS.gene052748:intron | 15.0% |
| !!! | GTTTTACTAGATTAAATATT+TGG | - | chr4.4:85435345-85435364 | None:intergenic | 15.0% |
| !!! | TTAATTGGATTTTAAGAAAT+TGG | - | chr4.4:85433982-85434001 | None:intergenic | 15.0% |
| !!! | TTTTATAACCAGTTTTTAAT+TGG | - | chr4.4:85433997-85434016 | None:intergenic | 15.0% |
| !! | AAAAAGTAATTAGAAATGGA+AGG | - | chr4.4:85433275-85433294 | None:intergenic | 20.0% |
| !! | CATGAAAAAGTAATTAGAAA+TGG | - | chr4.4:85433279-85433298 | None:intergenic | 20.0% |
| !! | CTTAAAATCCAATTAAAAAC+TGG | + | chr4.4:85433986-85434005 | MS.gene052748:intron | 20.0% |
| !! | GAATGAAATAAATTTGAATC+TGG | + | chr4.4:85434026-85434045 | MS.gene052748:intron | 20.0% |
| !! | TATACAATTAGTCGTATAAA+AGG | + | chr4.4:85435911-85435930 | MS.gene052748:intron | 20.0% |
| !! | TGATCATAGTATAATATTTG+AGG | + | chr4.4:85434290-85434309 | MS.gene052748:intron | 20.0% |
| !!! | AAACTGTTTTCTAATTAAGT+TGG | - | chr4.4:85433923-85433942 | None:intergenic | 20.0% |
| ! | AAAAAAAAAATTCCTCAAGG+AGG | + | chr4.4:85433064-85433083 | MS.gene052748:CDS | 25.0% |
| ! | AAAATTGTCTCTGTAAATGT+AGG | - | chr4.4:85435311-85435330 | None:intergenic | 25.0% |
| ! | AAATTTCAAACAAACCAAGT+AGG | - | chr4.4:85433255-85433274 | None:intergenic | 25.0% |
| ! | ACATATGACTTAAGTTACTT+AGG | - | chr4.4:85434830-85434849 | None:intergenic | 25.0% |
| ! | CATATGACTTAAGTTACTTA+GGG | - | chr4.4:85434829-85434848 | None:intergenic | 25.0% |
| ! | CATCTTCAAGATTCTATAAA+AGG | - | chr4.4:85435846-85435865 | None:intergenic | 25.0% |
| ! | GCATATAAATAACCACAAAT+TGG | - | chr4.4:85432858-85432877 | None:intergenic | 25.0% |
| ! | GGAATATAGAGAAAAGAAAA+CGG | - | chr4.4:85435721-85435740 | None:intergenic | 25.0% |
| ! | TAAAAGGTTAAGATAATTCC+AGG | + | chr4.4:85435927-85435946 | MS.gene052748:intron | 25.0% |
| ! | TCAAAAACCCAAAAATAGAA+AGG | - | chr4.4:85433550-85433569 | None:intergenic | 25.0% |
| ! | TTAATTTACAACTCATGATC+CGG | + | chr4.4:85432956-85432975 | MS.gene052748:intron | 25.0% |
| ! | TTAGTTTCAAAATATGGGAA+AGG | + | chr4.4:85434897-85434916 | MS.gene052748:intron | 25.0% |
| ! | TTCAAATAGATGACAACAAA+AGG | + | chr4.4:85434651-85434670 | MS.gene052748:intron | 25.0% |
| ! | TTTAGACTTGTACTACTATA+GGG | + | chr4.4:85436022-85436041 | MS.gene052748:intron | 25.0% |
| !! | AATTTTGCAATTAACCTACT+TGG | + | chr4.4:85433238-85433257 | MS.gene052748:intron | 25.0% |
| !! | ACTCTTTAAAAACTGTTTGA+GGG | - | chr4.4:85433853-85433872 | None:intergenic | 25.0% |
| !! | ACTGATATCAAATTTGAAAC+TGG | - | chr4.4:85433952-85433971 | None:intergenic | 25.0% |
| !! | AGGTACTTCTTTTCATAAAA+GGG | - | chr4.4:85434132-85434151 | None:intergenic | 25.0% |
| !! | AGTGGTTTAAGTTTAAATTG+CGG | + | chr4.4:85435053-85435072 | MS.gene052748:intron | 25.0% |
| !! | CATAATCATAAACTTGTTCT+TGG | + | chr4.4:85434053-85434072 | MS.gene052748:intron | 25.0% |
| !! | GAAATACATTTGAAGTGATT+AGG | - | chr4.4:85435824-85435843 | None:intergenic | 25.0% |
| !!! | AAGGTACTTCTTTTCATAAA+AGG | - | chr4.4:85434133-85434152 | None:intergenic | 25.0% |
| !!! | ACAAAAGAGTAATTTGTTAG+AGG | - | chr4.4:85433420-85433439 | None:intergenic | 25.0% |
| !!! | TCGTTTATTTTGCTCATTTT+TGG | + | chr4.4:85435775-85435794 | MS.gene052748:intron | 25.0% |
| AAAGATGAAGGAAACAAACA+AGG | + | chr4.4:85433322-85433341 | MS.gene052748:CDS | 30.0% | |
| AAAGGACGAAATATCTCAAA+GGG | - | chr4.4:85434257-85434276 | None:intergenic | 30.0% | |
| AAGAGAGAAAAGCTAAATCT+TGG | - | chr4.4:85434156-85434175 | None:intergenic | 30.0% | |
| AAGGATAAAGGAAACAAACA+AGG | + | chr4.4:85436505-85436524 | MS.gene052748:CDS | 30.0% | |
| AATAGAATATTGACAGTCCA+CGG | + | chr4.4:85435000-85435019 | MS.gene052748:intron | 30.0% | |
| ACTCATCACATTAATCTCTT+TGG | + | chr4.4:85434525-85434544 | MS.gene052748:intron | 30.0% | |
| ATATCAAATATTCCTCAAGC+AGG | + | chr4.4:85436267-85436286 | MS.gene052748:CDS | 30.0% | |
| ATGCCTTGAGAATAAAAACA+AGG | + | chr4.4:85434758-85434777 | MS.gene052748:intron | 30.0% | |
| ATGCTTGATATGAAGATGTT+TGG | + | chr4.4:85432912-85432931 | MS.gene052748:intron | 30.0% | |
| CTTTAGACTTGTACTACTAT+AGG | + | chr4.4:85436021-85436040 | MS.gene052748:intron | 30.0% | |
| GAAGTGGTGTAAGTTTAAAT+TGG | + | chr4.4:85435216-85435235 | MS.gene052748:intron | 30.0% | |
| GCATATAAATAACCACAAAC+TGG | - | chr4.4:85436158-85436177 | None:intergenic | 30.0% | |
| GTTCATAAACACTGAATTCA+AGG | + | chr4.4:85434092-85434111 | MS.gene052748:intron | 30.0% | |
| GTTTGATTGAGTCACAAAAA+GGG | - | chr4.4:85433606-85433625 | None:intergenic | 30.0% | |
| TAGAAAAGAAAGACGAAAAG+TGG | - | chr4.4:85434199-85434218 | None:intergenic | 30.0% | |
| TGGATATCAAATATTCCTCA+AGG | + | chr4.4:85433031-85433050 | MS.gene052748:CDS | 30.0% | |
| TTAACGACAATAAACAGAAG+AGG | + | chr4.4:85436540-85436559 | MS.gene052748:CDS | 30.0% | |
| TTAGACTTGTACTACTATAG+GGG | + | chr4.4:85436023-85436042 | MS.gene052748:intron | 30.0% | |
| TTCGACATTTGATCGATATT+AGG | - | chr4.4:85433210-85433229 | None:intergenic | 30.0% | |
| TTTGAGAAATTGTACTTCTC+TGG | + | chr4.4:85432809-85432828 | MS.gene052748:CDS | 30.0% | |
| TTTGTGCATTATCCTTTATG+TGG | - | chr4.4:85435246-85435265 | None:intergenic | 30.0% | |
| ! | AATCTACACTGATTACTACT+TGG | + | chr4.4:85434318-85434337 | MS.gene052748:intron | 30.0% |
| ! | ACATTTTCGCCATTTATGTT+CGG | - | chr4.4:85436319-85436338 | None:intergenic | 30.0% |
| ! | GACTCTTTAAAAACTGTTTG+AGG | - | chr4.4:85433854-85433873 | None:intergenic | 30.0% |
| ! | TTGATAGTACAAATCAAACC+TGG | - | chr4.4:85435948-85435967 | None:intergenic | 30.0% |
| !! | AGATTGAGTTGTTTTATCCT+TGG | + | chr4.4:85434433-85434452 | MS.gene052748:intron | 30.0% |
| !! | AGTAAGTATCGAAATCAACT+GGG | - | chr4.4:85433506-85433525 | None:intergenic | 30.0% |
| !! | CAAAAGCATCTAGAAGAATT+TGG | - | chr4.4:85434868-85434887 | None:intergenic | 30.0% |
| !! | GATTGAGTTGTTTTATCCTT+GGG | + | chr4.4:85434434-85434453 | MS.gene052748:intron | 30.0% |
| !! | GTTGTTTTATCTACAATGCA+TGG | + | chr4.4:85434377-85434396 | MS.gene052748:intron | 30.0% |
| !! | TGTATAGAAGTATTGCATAG+AGG | - | chr4.4:85432787-85432806 | None:intergenic | 30.0% |
| !!! | AACAAGCCATTTTGATTAGA+GGG | + | chr4.4:85434621-85434640 | MS.gene052748:intron | 30.0% |
| !!! | TTTTTTTTGAGAGATCCTTG+AGG | - | chr4.4:85433049-85433068 | None:intergenic | 30.0% |
| AAACATTCAGTTCCTCAGTT+AGG | - | chr4.4:85435477-85435496 | None:intergenic | 35.0% | |
| AACCTATACATCAAACTTGG+AGG | - | chr4.4:85433644-85433663 | None:intergenic | 35.0% | |
| AAGGCAAAGAAAAGAAGAAG+CGG | + | chr4.4:85436218-85436237 | MS.gene052748:CDS | 35.0% | |
| AGCAACCAAGTTTGATGTAT+AGG | + | chr4.4:85433639-85433658 | MS.gene052748:intron | 35.0% | |
| ATGAATACTCACAGTTCACA+GGG | - | chr4.4:85435388-85435407 | None:intergenic | 35.0% | |
| CCTTGAGAATAAAAACAAGG+TGG | + | chr4.4:85434761-85434780 | MS.gene052748:intron | 35.0% | |
| CGGTTTCGATGCTAATTAAA+GGG | + | chr4.4:85434920-85434939 | MS.gene052748:intron | 35.0% | |
| CTAGGGTTTAGTATATGCTT+AGG | + | chr4.4:85434733-85434752 | MS.gene052748:intron | 35.0% | |
| GAAAGGACGAAATATCTCAA+AGG | - | chr4.4:85434258-85434277 | None:intergenic | 35.0% | |
| GAGAAAAGCTAAATCTTGGA+AGG | - | chr4.4:85434152-85434171 | None:intergenic | 35.0% | |
| GATCACTCTGAATTTCTGAA+AGG | - | chr4.4:85434275-85434294 | None:intergenic | 35.0% | |
| GATGTCTGTCATTGATAAAC+AGG | + | chr4.4:85433166-85433185 | MS.gene052748:CDS | 35.0% | |
| GGAGGAACAAATTATTCTGA+AGG | - | chr4.4:85434224-85434243 | None:intergenic | 35.0% | |
| GGTTTGATTGAGTCACAAAA+AGG | - | chr4.4:85433607-85433626 | None:intergenic | 35.0% | |
| GTAGGACTAGATGTAAAATC+AGG | - | chr4.4:85435293-85435312 | None:intergenic | 35.0% | |
| GTATCTAAGAGACCAATTTG+TGG | + | chr4.4:85432843-85432862 | MS.gene052748:intron | 35.0% | |
| GTGGTGTAAGTTTAAATTGG+CGG | + | chr4.4:85435219-85435238 | MS.gene052748:intron | 35.0% | |
| GTTTCAAAATATGGGAAAGG+CGG | + | chr4.4:85434900-85434919 | MS.gene052748:intron | 35.0% | |
| TACAATGCATGGTTACTACT+TGG | + | chr4.4:85434388-85434407 | MS.gene052748:intron | 35.0% | |
| TAGTCTCTTAGTGAAACAGT+TGG | + | chr4.4:85433888-85433907 | MS.gene052748:intron | 35.0% | |
| TATGAATACTCACAGTTCAC+AGG | - | chr4.4:85435389-85435408 | None:intergenic | 35.0% | |
| TGATACCCCTCTAATCAAAA+TGG | - | chr4.4:85434630-85434649 | None:intergenic | 35.0% | |
| TGGAACCTATACATCAAACT+TGG | - | chr4.4:85433647-85433666 | None:intergenic | 35.0% | |
| TGGATATTTATAGCCCTCTT+GGG | + | chr4.4:85434781-85434800 | MS.gene052748:intron | 35.0% | |
| ! | ACATTTTTGCCAACTATGTC+TGG | - | chr4.4:85433116-85433135 | None:intergenic | 35.0% |
| ! | ATTGGTCTCTTAGATACCTT+TGG | - | chr4.4:85432840-85432859 | None:intergenic | 35.0% |
| ! | GCTTATGTTTTTCCTGACTT+TGG | + | chr4.4:85434803-85434822 | MS.gene052748:intron | 35.0% |
| ! | TTTTCTTTGCCTTCTATGTC+CGG | - | chr4.4:85436211-85436230 | None:intergenic | 35.0% |
| ! | TTTTTGCTTTCCTCCACATA+TGG | - | chr4.4:85433305-85433324 | None:intergenic | 35.0% |
| !! | AGGTAGGCCTTTCTATTTTT+GGG | + | chr4.4:85433540-85433559 | MS.gene052748:intron | 35.0% |
| !! | AGTAAGTACCGAAATCAACA+GGG | - | chr4.4:85436691-85436710 | None:intergenic | 35.0% |
| !! | CAGTAAGTATCGAAATCAAC+TGG | - | chr4.4:85433507-85433526 | None:intergenic | 35.0% |
| !! | CTTTTTCATGTAGCCATATG+TGG | + | chr4.4:85433289-85433308 | MS.gene052748:intron | 35.0% |
| !! | TTAGCTTTTCTCTCTTTTGC+TGG | + | chr4.4:85434160-85434179 | MS.gene052748:intron | 35.0% |
| !!! | ACAAGCCATTTTGATTAGAG+GGG | + | chr4.4:85434622-85434641 | MS.gene052748:intron | 35.0% |
| !!! | AGGCGAAGTGGTTTTAATTA+TGG | + | chr4.4:85435108-85435127 | MS.gene052748:intron | 35.0% |
| !!! | CAACAAGCCATTTTGATTAG+AGG | + | chr4.4:85434620-85434639 | MS.gene052748:intron | 35.0% |
| !!! | CCACCTTGTTTTTATTCTCA+AGG | - | chr4.4:85434764-85434783 | None:intergenic | 35.0% |
| !!! | TGATATCCACTTTTTCCAGT+TGG | - | chr4.4:85433020-85433039 | None:intergenic | 35.0% |
| AAAAACTGTTTGAGGGCAGA+GGG | - | chr4.4:85433846-85433865 | None:intergenic | 40.0% | |
| AAGGAAAAGAAGAAACGACG+AGG | + | chr4.4:85432990-85433009 | MS.gene052748:CDS | 40.0% | |
| ACACATCAATAGCCATGTGT+AGG | - | chr4.4:85433139-85433158 | None:intergenic | 40.0% | |
| ACTTACACAGTTAGAGTCAC+CGG | - | chr4.4:85436576-85436595 | None:intergenic | 40.0% | |
| AGCCTCCAAGTTTGATGTAT+AGG | + | chr4.4:85433667-85433686 | MS.gene052748:intron | 40.0% | |
| AGGAAAAACATAAGCCCAAG+AGG | - | chr4.4:85434798-85434817 | None:intergenic | 40.0% | |
| AGGAAGTTGCCATAGGTTAT+TGG | - | chr4.4:85435457-85435476 | None:intergenic | 40.0% | |
| ATACATCAAACTTGGAGGCT+TGG | - | chr4.4:85433667-85433686 | None:intergenic | 40.0% | |
| ATCGAAATCAACTGGGAAGA+AGG | - | chr4.4:85433499-85433518 | None:intergenic | 40.0% | |
| ATCTCAAAGGGACAAAACCT+GGG | - | chr4.4:85434245-85434264 | None:intergenic | 40.0% | |
| ATTACTACTTGGAGTAGAGG+AGG | + | chr4.4:85434329-85434348 | MS.gene052748:intron | 40.0% | |
| ATTCCAAGCATCAATAGCCA+TGG | - | chr4.4:85436347-85436366 | None:intergenic | 40.0% | |
| CATATGTGGAGGAAAGCAAA+AGG | + | chr4.4:85433303-85433322 | MS.gene052748:CDS | 40.0% | |
| CGAAGTTACAGTTAGAGTCA+CGG | - | chr4.4:85433394-85433413 | None:intergenic | 40.0% | |
| CGATACTTACTGATCGTTAG+CGG | + | chr4.4:85433515-85433534 | MS.gene052748:intron | 40.0% | |
| CTGATTACTACTTGGAGTAG+AGG | + | chr4.4:85434326-85434345 | MS.gene052748:intron | 40.0% | |
| CTGGTCTCTTAGATACCTTT+GGG | - | chr4.4:85436139-85436158 | None:intergenic | 40.0% | |
| GAAGTTACAGTTAGAGTCAC+GGG | - | chr4.4:85433393-85433412 | None:intergenic | 40.0% | |
| GCGGTTTCGATGCTAATTAA+AGG | + | chr4.4:85434919-85434938 | MS.gene052748:intron | 40.0% | |
| GCTCATGATCCGAACATAAA+TGG | + | chr4.4:85436307-85436326 | MS.gene052748:CDS | 40.0% | |
| GGAAAAACATAAGCCCAAGA+GGG | - | chr4.4:85434797-85434816 | None:intergenic | 40.0% | |
| GGAAGTTGCCATAGGTTATT+GGG | - | chr4.4:85435456-85435475 | None:intergenic | 40.0% | |
| GGAGGAAAGCAAAAAGATGA+AGG | + | chr4.4:85433310-85433329 | MS.gene052748:CDS | 40.0% | |
| GGAGGAAAGCAAAAGGATAA+AGG | + | chr4.4:85436493-85436512 | MS.gene052748:CDS | 40.0% | |
| GTATCTAAGAGACCAGTTTG+TGG | + | chr4.4:85436143-85436162 | MS.gene052748:intron | 40.0% | |
| GTGGATATTTATAGCCCTCT+TGG | + | chr4.4:85434780-85434799 | MS.gene052748:intron | 40.0% | |
| TAAAAACTGTTTGAGGGCAG+AGG | - | chr4.4:85433847-85433866 | None:intergenic | 40.0% | |
| TAAATTGGCGGTCCACATAA+AGG | + | chr4.4:85435231-85435250 | MS.gene052748:intron | 40.0% | |
| TACACATGGCTATTGATGTG+TGG | + | chr4.4:85433138-85433157 | MS.gene052748:CDS | 40.0% | |
| TACATCCACTAGATACCATC+TGG | + | chr4.4:85435426-85435445 | MS.gene052748:intron | 40.0% | |
| TAGAGGATTTCAACTTGAGC+AGG | - | chr4.4:85432770-85432789 | None:intergenic | 40.0% | |
| TATCTCAAAGGGACAAAACC+TGG | - | chr4.4:85434246-85434265 | None:intergenic | 40.0% | |
| TCACAAAAAGGGAAAACCCT+TGG | - | chr4.4:85433595-85433614 | None:intergenic | 40.0% | |
| TCGAAATCAACTGGGAAGAA+GGG | - | chr4.4:85433498-85433517 | None:intergenic | 40.0% | |
| TCGATGCTAATTAAAGGGCA+GGG | + | chr4.4:85434925-85434944 | MS.gene052748:intron | 40.0% | |
| TGGCAAAAATGTCCTACACA+TGG | + | chr4.4:85433124-85433143 | MS.gene052748:CDS | 40.0% | |
| TGGTCTCTTAGATACCTTTG+GGG | - | chr4.4:85432838-85432857 | None:intergenic | 40.0% | |
| TTAGGGCTATATTTCCCTGA+AGG | + | chr4.4:85435157-85435176 | MS.gene052748:intron | 40.0% | |
| TTCAGGGAAATATAGCCCTA+AGG | - | chr4.4:85435158-85435177 | None:intergenic | 40.0% | |
| TTCATAGTCACTACTGCAAG+AGG | - | chr4.4:85433700-85433719 | None:intergenic | 40.0% | |
| TTCCAAGCATCAATAGCCAT+GGG | - | chr4.4:85436346-85436365 | None:intergenic | 40.0% | |
| TTCGATGCTAATTAAAGGGC+AGG | + | chr4.4:85434924-85434943 | MS.gene052748:intron | 40.0% | |
| TTGGAATAAGATGTCTGTCG+AGG | + | chr4.4:85436360-85436379 | MS.gene052748:CDS | 40.0% | |
| TTTCATGTAGCCATATGTGG+AGG | + | chr4.4:85433292-85433311 | MS.gene052748:intron | 40.0% | |
| ! | ACTGGTCTCTTAGATACCTT+TGG | - | chr4.4:85436140-85436159 | None:intergenic | 40.0% |
| ! | AGATGGTATCTAGTGGATGT+AGG | - | chr4.4:85435427-85435446 | None:intergenic | 40.0% |
| ! | CAGGTAGGCCTTTCTATTTT+TGG | + | chr4.4:85433539-85433558 | MS.gene052748:intron | 40.0% |
| ! | CTTTTGCTTTCCTCCACATA+TGG | - | chr4.4:85436488-85436507 | None:intergenic | 40.0% |
| ! | GTATCTAGTGGATGTAGGAA+TGG | - | chr4.4:85435422-85435441 | None:intergenic | 40.0% |
| ! | TTTTCCTTGCCATCTATGTC+CGG | - | chr4.4:85432978-85432997 | None:intergenic | 40.0% |
| !! | CAGAATAATTTGTTCCTCCC+AGG | + | chr4.4:85434225-85434244 | MS.gene052748:intron | 40.0% |
| !! | CAGTAAGTACCGAAATCAAC+AGG | - | chr4.4:85436692-85436711 | None:intergenic | 40.0% |
| !!! | TGATATCCACTTTTTCCCGT+TGG | - | chr4.4:85436253-85436272 | None:intergenic | 40.0% |
| AAAGAAAAGAAGAAGCGGCG+AGG | + | chr4.4:85436223-85436242 | MS.gene052748:CDS | 45.0% | |
| AAGCATCAATAGCCATGGGT+AGG | - | chr4.4:85436342-85436361 | None:intergenic | 45.0% | |
| ACCGAAATCAACAGGGAAGA+AGG | - | chr4.4:85436684-85436703 | None:intergenic | 45.0% | |
| ACTCATGATCCGGACATAGA+AGG | + | chr4.4:85432966-85432985 | MS.gene052748:intron | 45.0% | |
| ACTCATGATCCGGACATAGA+TGG | + | chr4.4:85432966-85432985 | MS.gene052748:intron | 45.0% | |
| AGGTTATTGGGAAGACCAGA+TGG | - | chr4.4:85435444-85435463 | None:intergenic | 45.0% | |
| AGTTACTTAGGGCCAAAGTC+AGG | - | chr4.4:85434818-85434837 | None:intergenic | 45.0% | |
| CATTTCAAAAGCCACGTTCG+CGG | - | chr4.4:85433454-85433473 | None:intergenic | 45.0% | |
| CCGAAATCAACAGGGAAGAA+GGG | - | chr4.4:85436683-85436702 | None:intergenic | 45.0% | |
| CGATGCTAATTAAAGGGCAG+GGG | + | chr4.4:85434926-85434945 | MS.gene052748:intron | 45.0% | |
| CTATGGCAACTTCCTAACTG+AGG | + | chr4.4:85435462-85435481 | MS.gene052748:intron | 45.0% | |
| CTCAGTTAGGAAGTTGCCAT+AGG | - | chr4.4:85435464-85435483 | None:intergenic | 45.0% | |
| GAAAAGAAGAAACGACGAGG+TGG | + | chr4.4:85432993-85433012 | MS.gene052748:CDS | 45.0% | |
| GAAGACCAGATGGTATCTAG+TGG | - | chr4.4:85435434-85435453 | None:intergenic | 45.0% | |
| GATGTCTGTCGAGGATAAAC+AGG | + | chr4.4:85436369-85436388 | MS.gene052748:CDS | 45.0% | |
| GCATGGTTACTACTTGGAGT+AGG | + | chr4.4:85434394-85434413 | MS.gene052748:intron | 45.0% | |
| GCTATTGCCTATGCATCCAA+GGG | + | chr4.4:85433576-85433595 | MS.gene052748:intron | 45.0% | |
| GGTCAGTAAGCCTTTGTAGA+GGG | + | chr4.4:85434964-85434983 | MS.gene052748:intron | 45.0% | |
| TACCCATGGCTATTGATGCT+TGG | + | chr4.4:85436341-85436360 | MS.gene052748:CDS | 45.0% | |
| TGCTATTGCCTATGCATCCA+AGG | + | chr4.4:85433575-85433594 | MS.gene052748:intron | 45.0% | |
| TTGGTTGCTGCTGTCTCAAT+TGG | - | chr4.4:85433628-85433647 | None:intergenic | 45.0% | |
| ! | AGGCTTACTGACCCTTTTCT+AGG | - | chr4.4:85434957-85434976 | None:intergenic | 45.0% |
| ! | ATCTAGCTTGGTCGTTCCTT+AGG | + | chr4.4:85435139-85435158 | MS.gene052748:intron | 45.0% |
| ! | CTGGTCTTCCCAATAACCTA+TGG | + | chr4.4:85435445-85435464 | MS.gene052748:intron | 45.0% |
| ! | GGCTTACTGACCCTTTTCTA+GGG | - | chr4.4:85434956-85434975 | None:intergenic | 45.0% |
| ! | TCTAGCTTGGTCGTTCCTTA+GGG | + | chr4.4:85435140-85435159 | MS.gene052748:intron | 45.0% |
| !! | CCCTTCTTCCCTGTTGATTT+CGG | + | chr4.4:85436680-85436699 | MS.gene052748:CDS | 45.0% |
| AGTCACTACTGCAAGAGGCT+TGG | - | chr4.4:85433695-85433714 | None:intergenic | 50.0% | |
| ATCGAGCACATTCCTGCTTG+AGG | - | chr4.4:85436282-85436301 | None:intergenic | 50.0% | |
| ATGGCGAGCTTCATCTAGCT+TGG | + | chr4.4:85435127-85435146 | MS.gene052748:intron | 50.0% | |
| CTATCAATCACGACGTCCCA+AGG | - | chr4.4:85434453-85434472 | None:intergenic | 50.0% | |
| CTTACTGATCGTTAGCGGTC+AGG | + | chr4.4:85433520-85433539 | MS.gene052748:intron | 50.0% | |
| GCAATGTTCCAAGCCTCTTG+CGG | + | chr4.4:85433744-85433763 | MS.gene052748:intron | 50.0% | |
| GCTCGTGATCCAGACATAGT+TGG | + | chr4.4:85433104-85433123 | MS.gene052748:CDS | 50.0% | |
| GGGAAAACCCTTGGATGCAT+AGG | - | chr4.4:85433586-85433605 | None:intergenic | 50.0% | |
| GGGTCAGTAAGCCTTTGTAG+AGG | + | chr4.4:85434963-85434982 | MS.gene052748:intron | 50.0% | |
| GGTGGTCCAACTGGAAAAAG+TGG | + | chr4.4:85433011-85433030 | MS.gene052748:CDS | 50.0% | |
| TACTTCTCTGGCAGCTCCAA+AGG | + | chr4.4:85432821-85432840 | MS.gene052748:CDS | 50.0% | |
| TCAAAGGGACAAAACCTGGG+AGG | - | chr4.4:85434242-85434261 | None:intergenic | 50.0% | |
| TGATCCGGACATAGATGGCA+AGG | + | chr4.4:85432971-85432990 | MS.gene052748:intron | 50.0% | |
| TGGCGAAAATGTCCTACCCA+TGG | + | chr4.4:85436327-85436346 | MS.gene052748:CDS | 50.0% | |
| TGTCCCAAGACTCGTGCTTA+GGG | - | chr4.4:85435192-85435211 | None:intergenic | 50.0% | |
| TTGTCCCAAGACTCGTGCTT+AGG | - | chr4.4:85435028-85435047 | None:intergenic | 50.0% | |
| TTGTCCCAAGACTCGTGCTT+GGG | - | chr4.4:85435028-85435047 | None:intergenic | 50.0% | |
| !! | AGCTTGCTAGCCCTCTACAA+AGG | - | chr4.4:85434977-85434996 | None:intergenic | 50.0% |
| !! | CTCTTAGATACCTTTGGGGC+TGG | - | chr4.4:85436134-85436153 | None:intergenic | 50.0% |
| AAACGACGAGGTGGTCCAAC+TGG | + | chr4.4:85433002-85433021 | MS.gene052748:CDS | 55.0% | |
| AGTCTTGGGACAACGCGAAG+TGG | + | chr4.4:85435200-85435219 | MS.gene052748:intron | 55.0% | |
| AGTCTTGGGACAAGGCGAAG+TGG | + | chr4.4:85435035-85435054 | MS.gene052748:intron | 55.0% | |
| ATCGAGCGCATTCCTCCTTG+AGG | - | chr4.4:85433079-85433098 | None:intergenic | 55.0% | |
| CAAGCACGAGTCTTGGGACA+AGG | + | chr4.4:85435027-85435046 | MS.gene052748:intron | 55.0% | |
| CTACTAGCCACTACCGCAAG+AGG | - | chr4.4:85433760-85433779 | None:intergenic | 55.0% | |
| CTGATCGTTAGCGGTCAGGT+AGG | + | chr4.4:85433524-85433543 | MS.gene052748:intron | 55.0% | |
| CTTGTCCCAAGACTCGTGCT+TGG | - | chr4.4:85435029-85435048 | None:intergenic | 55.0% | |
| GGTGCTCCAACGGGAAAAAG+TGG | + | chr4.4:85436244-85436263 | MS.gene052748:CDS | 55.0% | |
| GTCCCAAGACTCGTGCTTAG+GGG | - | chr4.4:85435191-85435210 | None:intergenic | 55.0% | |
| TACTTCTCTGCCAGCCCCAA+AGG | + | chr4.4:85436121-85436140 | MS.gene052748:intron | 55.0% | |
| TAGGGGGCTGTGAACCTTCA+GGG | - | chr4.4:85435174-85435193 | None:intergenic | 55.0% | |
| TCCCAAGACTCGTGCTTAGG+GGG | - | chr4.4:85435190-85435209 | None:intergenic | 55.0% | |
| TGTCCCAAGACTCGTGCTTG+GGG | - | chr4.4:85435027-85435046 | None:intergenic | 55.0% | |
| TTAGAGTCACCGGACACACG+AGG | - | chr4.4:85436566-85436585 | None:intergenic | 55.0% | |
| TTAGAGTCACGGGACACACG+AGG | - | chr4.4:85433383-85433402 | None:intergenic | 55.0% | |
| TTAGGGGGCTGTGAACCTTC+AGG | - | chr4.4:85435175-85435194 | None:intergenic | 55.0% | |
| TTCCAAGCCTCTTGCGGTAG+TGG | + | chr4.4:85433750-85433769 | MS.gene052748:intron | 55.0% | |
| AGCCACTACCGCAAGAGGCT+TGG | - | chr4.4:85433755-85433774 | None:intergenic | 60.0% | |
| AGCCCCCTAAGCACGAGTCT+TGG | + | chr4.4:85435185-85435204 | MS.gene052748:intron | 60.0% | |
| CAGAAGAGGCCTCGTGTGTC+CGG | + | chr4.4:85436554-85436573 | MS.gene052748:CDS | 60.0% | |
| GCCCCCTAAGCACGAGTCTT+GGG | + | chr4.4:85435186-85435205 | MS.gene052748:intron | 60.0% | |
| GTCCCAAGACTCGTGCTTGG+GGG | - | chr4.4:85435026-85435045 | None:intergenic | 60.0% | |
| TCCCAAGACTCGTGCTTGGG+GGG | - | chr4.4:85435025-85435044 | None:intergenic | 60.0% | |
| ! | CAGGGGCGTGCCCTAGAAAA+GGG | + | chr4.4:85434943-85434962 | MS.gene052748:intron | 60.0% |
| AGCCCCCCAAGCACGAGTCT+TGG | + | chr4.4:85435081-85435100 | MS.gene052748:intron | 65.0% | |
| CAACAACGCAGCCGCGAACG+TGG | + | chr4.4:85433440-85433459 | MS.gene052748:intron | 65.0% | |
| GCCCCCCAAGCACGAGTCTT+GGG | + | chr4.4:85435082-85435101 | MS.gene052748:intron | 65.0% | |
| GGCCCCCAAGCACGAGTCTT+GGG | + | chr4.4:85435021-85435040 | MS.gene052748:intron | 65.0% | |
| ! | AAGCGGCGAGGTGCTCCAAC+GGG | + | chr4.4:85436235-85436254 | MS.gene052748:CDS | 65.0% |
| ! | GAAGCGGCGAGGTGCTCCAA+CGG | + | chr4.4:85436234-85436253 | MS.gene052748:CDS | 65.0% |
| ! | GCAGGGGCGTGCCCTAGAAA+AGG | + | chr4.4:85434942-85434961 | MS.gene052748:intron | 65.0% |
| AGACTCGTGCTTGGGGGCCG+TGG | - | chr4.4:85435020-85435039 | None:intergenic | 70.0% | |
| CGGCCCCCAAGCACGAGTCT+TGG | + | chr4.4:85435020-85435039 | MS.gene052748:intron | 70.0% | |
| GACTCGTGCTTGGGGGGCTG+TGG | - | chr4.4:85435080-85435099 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 85432761 | 85436712 | 85432761 | ID=MS.gene052748 |
| chr4.4 | mRNA | 85432761 | 85436712 | 85432761 | ID=MS.gene052748.t1;Parent=MS.gene052748 |
| chr4.4 | exon | 85432761 | 85432842 | 85432761 | ID=MS.gene052748.t1.exon1;Parent=MS.gene052748.t1 |
| chr4.4 | CDS | 85432761 | 85432842 | 85432761 | ID=cds.MS.gene052748.t1;Parent=MS.gene052748.t1 |
| chr4.4 | exon | 85432985 | 85433187 | 85432985 | ID=MS.gene052748.t1.exon2;Parent=MS.gene052748.t1 |
| chr4.4 | CDS | 85432985 | 85433187 | 85432985 | ID=cds.MS.gene052748.t1;Parent=MS.gene052748.t1 |
| chr4.4 | exon | 85433302 | 85433383 | 85433302 | ID=MS.gene052748.t1.exon3;Parent=MS.gene052748.t1 |
| chr4.4 | CDS | 85433302 | 85433383 | 85433302 | ID=cds.MS.gene052748.t1;Parent=MS.gene052748.t1 |
| chr4.4 | exon | 85436218 | 85436390 | 85436218 | ID=MS.gene052748.t1.exon4;Parent=MS.gene052748.t1 |
| chr4.4 | CDS | 85436218 | 85436390 | 85436218 | ID=cds.MS.gene052748.t1;Parent=MS.gene052748.t1 |
| chr4.4 | exon | 85436485 | 85436712 | 85436485 | ID=MS.gene052748.t1.exon5;Parent=MS.gene052748.t1 |
| chr4.4 | CDS | 85436485 | 85436712 | 85436485 | ID=cds.MS.gene052748.t1;Parent=MS.gene052748.t1 |
| Gene Sequence |
| Protein sequence |
