Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052840.t1 | KEH26464.1 | 81 | 289 | 49 | 2 | 31 | 319 | 188 | 470 | 3.50E-128 | 468 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052840.t1 | A0A072U9K2 | 81.0 | 289 | 49 | 2 | 31 | 319 | 188 | 470 | 2.5e-128 | 468.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052840.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052840.t1 | MTR_6g061070 | 80.969 | 289 | 49 | 2 | 31 | 319 | 188 | 470 | 9.23e-169 | 477 |
| MS.gene052840.t1 | MTR_1g035520 | 79.577 | 142 | 29 | 0 | 178 | 319 | 242 | 383 | 6.75e-77 | 240 |
| MS.gene052840.t1 | MTR_1g035490 | 36.965 | 257 | 136 | 8 | 64 | 319 | 97 | 328 | 1.32e-43 | 152 |
| MS.gene052840.t1 | MTR_1g035570 | 33.893 | 298 | 136 | 9 | 32 | 319 | 148 | 394 | 6.35e-38 | 139 |
| MS.gene052840.t1 | MTR_1g035620 | 33.220 | 295 | 155 | 8 | 30 | 318 | 150 | 408 | 1.97e-34 | 130 |
| MS.gene052840.t1 | MTR_1g035540 | 44.304 | 158 | 32 | 4 | 88 | 245 | 2 | 103 | 4.44e-31 | 114 |
| MS.gene052840.t1 | MTR_1g035640 | 31.132 | 318 | 162 | 12 | 42 | 319 | 164 | 464 | 1.43e-28 | 115 |
| MS.gene052840.t1 | MTR_1g050845 | 32.143 | 224 | 125 | 4 | 64 | 284 | 164 | 363 | 1.18e-23 | 102 |
| MS.gene052840.t1 | MTR_1g108780 | 24.277 | 346 | 205 | 12 | 17 | 318 | 124 | 456 | 1.14e-15 | 77.8 |
| MS.gene052840.t1 | MTR_5g044670 | 34.426 | 122 | 76 | 3 | 55 | 176 | 197 | 314 | 4.52e-14 | 72.0 |
| MS.gene052840.t1 | MTR_8g103940 | 24.713 | 348 | 204 | 14 | 13 | 318 | 162 | 493 | 1.52e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAATATGTGGGCAATTT+TGG | 0.142869 | 1.4:+20445590 | MS.gene052840:CDS |
| TTGAATTTGTCATGTAAATT+CGG | 0.311912 | 1.4:-20445759 | None:intergenic |
| CACATATTCCATATCTTCTT+CGG | 0.325520 | 1.4:-20445579 | None:intergenic |
| AAAAGACATAATATATTTAG+TGG | 0.334344 | 1.4:+20445917 | MS.gene052840:CDS |
| TATAATGAACATCTCGACTA+TGG | 0.355043 | 1.4:+20445992 | MS.gene052840:CDS |
| TTCCTTTGTGGCTGAGATAA+TGG | 0.378576 | 1.4:-20445336 | None:intergenic |
| CTCTGGGCATGGTTCCTTTG+TGG | 0.384680 | 1.4:-20445348 | None:intergenic |
| GACAATGCCCGAAGAAGATA+TGG | 0.389565 | 1.4:+20445571 | MS.gene052840:CDS |
| TAATATATTTAGTGGAAATT+CGG | 0.396970 | 1.4:+20445925 | MS.gene052840:CDS |
| ATAGGAAACATACCAATCTA+TGG | 0.397767 | 1.4:-20444707 | None:intergenic |
| TTAATACCTTGAAACTGCTC+TGG | 0.427580 | 1.4:-20445365 | None:intergenic |
| GCCTTAAAACACAAGGTCTC+AGG | 0.437600 | 1.4:+20445633 | MS.gene052840:CDS |
| GAATTTACATGACAAATTCA+AGG | 0.456040 | 1.4:+20445761 | MS.gene052840:CDS |
| AAGGAACATGACTTGAAAGT+TGG | 0.470859 | 1.4:+20445260 | MS.gene052840:CDS |
| ATTCGGTGGAGTTGAAAGTA+GGG | 0.471281 | 1.4:+20445942 | MS.gene052840:CDS |
| ACATATTCCATATCTTCTTC+GGG | 0.475083 | 1.4:-20445578 | None:intergenic |
| CGAAGAAGATATGGAATATG+TGG | 0.478018 | 1.4:+20445580 | MS.gene052840:CDS |
| TTAGAAGTGTTGATGAGGAC+AGG | 0.485676 | 1.4:+20445162 | MS.gene052840:CDS |
| AGTGAAACTAGGATTCTCAT+TGG | 0.490637 | 1.4:-20444655 | None:intergenic |
| TGAAAGTAGGGGAAGGAACA+TGG | 0.498346 | 1.4:+20445954 | MS.gene052840:CDS |
| TCATGTTGAAGGCCATAGAT+TGG | 0.499482 | 1.4:+20444695 | MS.gene052840:CDS |
| AATTCGGTGGAGTTGAAAGT+AGG | 0.502201 | 1.4:+20445941 | MS.gene052840:CDS |
| TTGTCAATGTTTGTCCCTTG+AGG | 0.507957 | 1.4:-20444274 | None:intergenic |
| AGAGATTGCAAAGTAAAGAC+TGG | 0.513081 | 1.4:+20446046 | MS.gene052840:CDS |
| CCATGCCCAGAGCAGTTTCA+AGG | 0.516067 | 1.4:+20445359 | MS.gene052840:CDS |
| ATGGCCTTCAACATGAGATC+GGG | 0.518094 | 1.4:-20444688 | None:intergenic |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1.4:+20446096 | MS.gene052840:CDS |
| ACTGTTGCTGCTACACCTCA+AGG | 0.523151 | 1.4:+20444259 | MS.gene052840:CDS |
| ATGGTAATTGTGAATGAAAG+TGG | 0.526717 | 1.4:-20445317 | None:intergenic |
| TTATCCCGATCTCATGTTGA+AGG | 0.533386 | 1.4:+20444684 | MS.gene052840:CDS |
| GTGAAACTAGGATTCTCATT+GGG | 0.534567 | 1.4:-20444654 | None:intergenic |
| GACTATGGATGGTTCACTAA+AGG | 0.536976 | 1.4:+20446007 | MS.gene052840:CDS |
| CCTTGAAACTGCTCTGGGCA+TGG | 0.538312 | 1.4:-20445359 | None:intergenic |
| TATGGCCTTCAACATGAGAT+CGG | 0.541774 | 1.4:-20444689 | None:intergenic |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1.4:+20445128 | MS.gene052840:CDS |
| TATATTTAGTGGAAATTCGG+TGG | 0.544355 | 1.4:+20445928 | MS.gene052840:CDS |
| TATTCGTTTGAAAACCATGT+AGG | 0.557476 | 1.4:-20445107 | None:intergenic |
| ATGGATGGTTCACTAAAGGC+TGG | 0.558556 | 1.4:+20446011 | MS.gene052840:CDS |
| GATAATTTGAGAGTGAAACT+AGG | 0.566910 | 1.4:-20444666 | None:intergenic |
| ATGAACATCTCGACTATGGA+TGG | 0.566956 | 1.4:+20445996 | MS.gene052840:CDS |
| TAATACCTTGAAACTGCTCT+GGG | 0.569622 | 1.4:-20445364 | None:intergenic |
| TGAAACAGAGGCTACCTACA+TGG | 0.580260 | 1.4:+20445093 | MS.gene052840:intron |
| AACAATTAGAAGTGTTGATG+AGG | 0.583313 | 1.4:+20445157 | MS.gene052840:CDS |
| AATAGAGACAGAGGAGGCCG+CGG | 0.610798 | 1.4:+20444567 | MS.gene052840:CDS |
| GCAGAGGCTAATAGAGACAG+AGG | 0.621169 | 1.4:+20444558 | MS.gene052840:intron |
| GGAAGGAACATGGTTTGTAG+AGG | 0.629163 | 1.4:+20445964 | MS.gene052840:CDS |
| GAAGAAGATATGGAATATGT+GGG | 0.632888 | 1.4:+20445581 | MS.gene052840:CDS |
| TTCGGTGGAGTTGAAAGTAG+GGG | 0.634551 | 1.4:+20445943 | MS.gene052840:CDS |
| CTGTTGCTGCTACACCTCAA+GGG | 0.643334 | 1.4:+20444260 | MS.gene052840:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1.4:+20445133 | MS.gene052840:CDS |
| GTGGAGTTGAAAGTAGGGGA+AGG | 0.644645 | 1.4:+20445947 | MS.gene052840:CDS |
| TAGAAGTGTTGATGAGGACA+GGG | 0.646868 | 1.4:+20445163 | MS.gene052840:CDS |
| ATTTCTTAGCTTTCTTACCG+CGG | 0.652512 | 1.4:-20444584 | None:intergenic |
| TACCATTATCTCAGCCACAA+AGG | 0.654889 | 1.4:+20445334 | MS.gene052840:CDS |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1.4:+20445129 | MS.gene052840:CDS |
| AACAGCTGCCTTAAAACACA+AGG | 0.666453 | 1.4:+20445626 | MS.gene052840:CDS |
| GTGTTGATGAGGACAGGGCA+CGG | 0.684939 | 1.4:+20445168 | MS.gene052840:CDS |
| GAGGCTAATAGAGACAGAGG+AGG | 0.708768 | 1.4:+20444561 | MS.gene052840:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGACATAATATATTTAG+TGG | + | chr1.4:20445917-20445936 | MS.gene052840:CDS | 15.0% |
| !! | AAGAAAAAACATAAATAAAG+TGG | - | chr1.4:20444432-20444451 | None:intergenic | 15.0% |
| !! | AGAAAAAACATAAATAAAGT+GGG | - | chr1.4:20444431-20444450 | None:intergenic | 15.0% |
| !! | CTTGAAAAATAAAATTAAGA+TGG | - | chr1.4:20445664-20445683 | None:intergenic | 15.0% |
| !! | TAATATATTTAGTGGAAATT+CGG | + | chr1.4:20445925-20445944 | MS.gene052840:CDS | 15.0% |
| !! | AGTTTGATACATTTAAATAC+TGG | + | chr1.4:20444998-20445017 | MS.gene052840:intron | 20.0% |
| !! | TAAAAACATGTACATTTGTA+TGG | - | chr1.4:20444400-20444419 | None:intergenic | 20.0% |
| !! | TTGAATTTGTCATGTAAATT+CGG | - | chr1.4:20445762-20445781 | None:intergenic | 20.0% |
| ! | AAATGCACAAAAACTAAACA+TGG | + | chr1.4:20444603-20444622 | MS.gene052840:CDS | 25.0% |
| ! | AATGCACAAAAACTAAACAT+GGG | + | chr1.4:20444604-20444623 | MS.gene052840:CDS | 25.0% |
| ! | ACTAACAGAAAACATATTCA+AGG | + | chr1.4:20444867-20444886 | MS.gene052840:intron | 25.0% |
| ! | AGAACAAAGAAAACAGTTTA+AGG | - | chr1.4:20445716-20445735 | None:intergenic | 25.0% |
| ! | AGTAGTATGTTTACATTACA+TGG | - | chr1.4:20445485-20445504 | None:intergenic | 25.0% |
| ! | GAATTTACATGACAAATTCA+AGG | + | chr1.4:20445761-20445780 | MS.gene052840:CDS | 25.0% |
| ! | TATTCACAAGAGAAACATTT+GGG | - | chr1.4:20444829-20444848 | None:intergenic | 25.0% |
| ! | TTAACTATATGTAATGTGCA+TGG | - | chr1.4:20445034-20445053 | None:intergenic | 25.0% |
| ! | TTTGTTCTTATATATGCAGT+TGG | + | chr1.4:20445871-20445890 | MS.gene052840:intron | 25.0% |
| !! | AGAGACTTTCATTTTACTAT+AGG | + | chr1.4:20444773-20444792 | MS.gene052840:intron | 25.0% |
| !! | ATCATGGGAAAAAAAAGTAT+AGG | - | chr1.4:20444728-20444747 | None:intergenic | 25.0% |
| !! | CATTTGTATGGATTAAAAAG+TGG | - | chr1.4:20444388-20444407 | None:intergenic | 25.0% |
| !! | TTGATTTTCAAATGTGTCTT+TGG | - | chr1.4:20444940-20444959 | None:intergenic | 25.0% |
| !! | TTTTGTAACATCATTAGACA+AGG | + | chr1.4:20445785-20445804 | MS.gene052840:CDS | 25.0% |
| !!! | AAATGTACATGTTTTTAGTC+CGG | + | chr1.4:20444403-20444422 | MS.gene052840:intron | 25.0% |
| ACATATTCCATATCTTCTTC+GGG | - | chr1.4:20445581-20445600 | None:intergenic | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | + | chr1.4:20445129-20445148 | MS.gene052840:CDS | 30.0% | |
| AGCTAACAATAGAGACATTT+AGG | + | chr1.4:20444963-20444982 | MS.gene052840:intron | 30.0% | |
| AGGTACAAAAATCACTATCA+TGG | - | chr1.4:20444744-20444763 | None:intergenic | 30.0% | |
| ATAGGAAACATACCAATCTA+TGG | - | chr1.4:20444710-20444729 | None:intergenic | 30.0% | |
| ATGGTAATTGTGAATGAAAG+TGG | - | chr1.4:20445320-20445339 | None:intergenic | 30.0% | |
| ATTCACAAGAGAAACATTTG+GGG | - | chr1.4:20444828-20444847 | None:intergenic | 30.0% | |
| CACATATTCCATATCTTCTT+CGG | - | chr1.4:20445582-20445601 | None:intergenic | 30.0% | |
| CTATTCACAAGAGAAACATT+TGG | - | chr1.4:20444830-20444849 | None:intergenic | 30.0% | |
| GAAGAAGATATGGAATATGT+GGG | + | chr1.4:20445581-20445600 | MS.gene052840:CDS | 30.0% | |
| GATAATTTGAGAGTGAAACT+AGG | - | chr1.4:20444669-20444688 | None:intergenic | 30.0% | |
| GGTACAAAAATCACTATCAT+GGG | - | chr1.4:20444743-20444762 | None:intergenic | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | + | chr1.4:20445128-20445147 | MS.gene052840:CDS | 30.0% | |
| TATAATGAACATCTCGACTA+TGG | + | chr1.4:20445992-20446011 | MS.gene052840:CDS | 30.0% | |
| TATATTTAGTGGAAATTCGG+TGG | + | chr1.4:20445928-20445947 | MS.gene052840:CDS | 30.0% | |
| TATTCGTTTGAAAACCATGT+AGG | - | chr1.4:20445110-20445129 | None:intergenic | 30.0% | |
| !! | AACAATTAGAAGTGTTGATG+AGG | + | chr1.4:20445157-20445176 | MS.gene052840:CDS | 30.0% |
| !! | CTGATTTTATTTGCACTTGT+TGG | - | chr1.4:20445550-20445569 | None:intergenic | 30.0% |
| !!! | AATGTACATGTTTTTAGTCC+GGG | + | chr1.4:20444404-20444423 | MS.gene052840:intron | 30.0% |
| !!! | ATAGTTTTAACGTTTTGCAG+AGG | + | chr1.4:20444542-20444561 | MS.gene052840:intron | 30.0% |
| !!! | CAATGACAGTTTTTTAATGC+AGG | + | chr1.4:20445217-20445236 | MS.gene052840:CDS | 30.0% |
| AACATAAATAAAGTGGGTCC+CGG | - | chr1.4:20444425-20444444 | None:intergenic | 35.0% | |
| AAGGAACATGACTTGAAAGT+TGG | + | chr1.4:20445260-20445279 | MS.gene052840:CDS | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+TGG | + | chr1.4:20446046-20446065 | MS.gene052840:CDS | 35.0% | |
| AGTGAAACTAGGATTCTCAT+TGG | - | chr1.4:20444658-20444677 | None:intergenic | 35.0% | |
| CGAAGAAGATATGGAATATG+TGG | + | chr1.4:20445580-20445599 | MS.gene052840:CDS | 35.0% | |
| GTGAAACTAGGATTCTCATT+GGG | - | chr1.4:20444657-20444676 | None:intergenic | 35.0% | |
| TAAATCATGACCTGAAACAG+AGG | + | chr1.4:20445081-20445100 | MS.gene052840:intron | 35.0% | |
| TAATACCTTGAAACTGCTCT+GGG | - | chr1.4:20445367-20445386 | None:intergenic | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | + | chr1.4:20446096-20446115 | MS.gene052840:CDS | 35.0% | |
| TTAATACCTTGAAACTGCTC+TGG | - | chr1.4:20445368-20445387 | None:intergenic | 35.0% | |
| TTCACAAGAGAAACATTTGG+GGG | - | chr1.4:20444827-20444846 | None:intergenic | 35.0% | |
| ! | ATGGAATATGTGGGCAATTT+TGG | + | chr1.4:20445590-20445609 | MS.gene052840:CDS | 35.0% |
| ! | ATTTCTTAGCTTTCTTACCG+CGG | - | chr1.4:20444587-20444606 | None:intergenic | 35.0% |
| ! | TGTCTTTTTAACAGCTCACT+TGG | - | chr1.4:20445905-20445924 | None:intergenic | 35.0% |
| !! | TGGTTGGAAGTCATTTTCAA+AGG | + | chr1.4:20445241-20445260 | MS.gene052840:CDS | 35.0% |
| !!! | ACTTGCCTGAAATTTTTTGC+AGG | - | chr1.4:20444324-20444343 | None:intergenic | 35.0% |
| !!! | CTTGCCTGAAATTTTTTGCA+GGG | - | chr1.4:20444323-20444342 | None:intergenic | 35.0% |
| !!! | GACAGTTTTTTAATGCAGGT+TGG | + | chr1.4:20445221-20445240 | MS.gene052840:CDS | 35.0% |
| !!! | GTTTTTTAATGCAGGTTGGT+TGG | + | chr1.4:20445225-20445244 | MS.gene052840:CDS | 35.0% |
| AACAGCTGCCTTAAAACACA+AGG | + | chr1.4:20445626-20445645 | MS.gene052840:CDS | 40.0% | |
| AAGAGAAACATTTGGGGGTT+TGG | - | chr1.4:20444822-20444841 | None:intergenic | 40.0% | |
| ATGAACATCTCGACTATGGA+TGG | + | chr1.4:20445996-20446015 | MS.gene052840:CDS | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | + | chr1.4:20445133-20445152 | MS.gene052840:CDS | 40.0% | |
| GACTATGGATGGTTCACTAA+AGG | + | chr1.4:20446007-20446026 | MS.gene052840:CDS | 40.0% | |
| GCAACCCTGCAAAAAATTTC+AGG | + | chr1.4:20444316-20444335 | MS.gene052840:CDS | 40.0% | |
| TACCATTATCTCAGCCACAA+AGG | + | chr1.4:20445334-20445353 | MS.gene052840:CDS | 40.0% | |
| TATGGCCTTCAACATGAGAT+CGG | - | chr1.4:20444692-20444711 | None:intergenic | 40.0% | |
| TCATGTTGAAGGCCATAGAT+TGG | + | chr1.4:20444695-20444714 | MS.gene052840:CDS | 40.0% | |
| TGAAAGTCTCTCACACAGTT+AGG | - | chr1.4:20444764-20444783 | None:intergenic | 40.0% | |
| TTATCCCGATCTCATGTTGA+AGG | + | chr1.4:20444684-20444703 | MS.gene052840:CDS | 40.0% | |
| TTCCTTTGTGGCTGAGATAA+TGG | - | chr1.4:20445339-20445358 | None:intergenic | 40.0% | |
| TTGTCAATGTTTGTCCCTTG+AGG | - | chr1.4:20444277-20444296 | None:intergenic | 40.0% | |
| ! | AATTCGGTGGAGTTGAAAGT+AGG | + | chr1.4:20445941-20445960 | MS.gene052840:CDS | 40.0% |
| ! | ATTCGGTGGAGTTGAAAGTA+GGG | + | chr1.4:20445942-20445961 | MS.gene052840:CDS | 40.0% |
| ! | TCCTGAGACCTTGTGTTTTA+AGG | - | chr1.4:20445637-20445656 | None:intergenic | 40.0% |
| !! | TAGAAGTGTTGATGAGGACA+GGG | + | chr1.4:20445163-20445182 | MS.gene052840:CDS | 40.0% |
| !! | TTAGAAGTGTTGATGAGGAC+AGG | + | chr1.4:20445162-20445181 | MS.gene052840:CDS | 40.0% |
| ATGGATGGTTCACTAAAGGC+TGG | + | chr1.4:20446011-20446030 | MS.gene052840:CDS | 45.0% | |
| ATGGCCTTCAACATGAGATC+GGG | - | chr1.4:20444691-20444710 | None:intergenic | 45.0% | |
| ATGTAGGTAGCCTCTGTTTC+AGG | - | chr1.4:20445094-20445113 | None:intergenic | 45.0% | |
| GACAATGCCCGAAGAAGATA+TGG | + | chr1.4:20445571-20445590 | MS.gene052840:CDS | 45.0% | |
| GCCTTAAAACACAAGGTCTC+AGG | + | chr1.4:20445633-20445652 | MS.gene052840:CDS | 45.0% | |
| TGAAACAGAGGCTACCTACA+TGG | + | chr1.4:20445093-20445112 | MS.gene052840:intron | 45.0% | |
| TGAAAGTAGGGGAAGGAACA+TGG | + | chr1.4:20445954-20445973 | MS.gene052840:CDS | 45.0% | |
| TTCGGTGGAGTTGAAAGTAG+GGG | + | chr1.4:20445943-20445962 | MS.gene052840:CDS | 45.0% | |
| ! | GGAAGGAACATGGTTTGTAG+AGG | + | chr1.4:20445964-20445983 | MS.gene052840:CDS | 45.0% |
| !!! | TATTAATTTCATTATTATTT+TGG | + | chr1.4:20445382-20445401 | MS.gene052840:intron | 5.0% |
| ACTGTTGCTGCTACACCTCA+AGG | + | chr1.4:20444259-20444278 | MS.gene052840:CDS | 50.0% | |
| CTGTTGCTGCTACACCTCAA+GGG | + | chr1.4:20444260-20444279 | MS.gene052840:CDS | 50.0% | |
| GAGGCTAATAGAGACAGAGG+AGG | + | chr1.4:20444561-20444580 | MS.gene052840:intron | 50.0% | |
| GCAGAGGCTAATAGAGACAG+AGG | + | chr1.4:20444558-20444577 | MS.gene052840:intron | 50.0% | |
| GTGGAGTTGAAAGTAGGGGA+AGG | + | chr1.4:20445947-20445966 | MS.gene052840:CDS | 50.0% | |
| !! | TCTGCTTTTGATCCCCGACA+AGG | + | chr1.4:20445506-20445525 | MS.gene052840:intron | 50.0% |
| AATAGAGACAGAGGAGGCCG+CGG | + | chr1.4:20444567-20444586 | MS.gene052840:CDS | 55.0% | |
| CCATGCCCAGAGCAGTTTCA+AGG | + | chr1.4:20445359-20445378 | MS.gene052840:CDS | 55.0% | |
| CTCTGGGCATGGTTCCTTTG+TGG | - | chr1.4:20445351-20445370 | None:intergenic | 55.0% | |
| CTGCATGTCGACGACCTTGT+CGG | - | chr1.4:20445523-20445542 | None:intergenic | 55.0% | |
| TGCATGTCGACGACCTTGTC+GGG | - | chr1.4:20445522-20445541 | None:intergenic | 55.0% | |
| ! | CCTTGAAACTGCTCTGGGCA+TGG | - | chr1.4:20445362-20445381 | None:intergenic | 55.0% |
| ! | GTGTTGATGAGGACAGGGCA+CGG | + | chr1.4:20445168-20445187 | MS.gene052840:CDS | 55.0% |
| GCATGTCGACGACCTTGTCG+GGG | - | chr1.4:20445521-20445540 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20444248 | 20446132 | 20444248 | ID=MS.gene052840 |
| chr1.4 | mRNA | 20444248 | 20446132 | 20444248 | ID=MS.gene052840.t1;Parent=MS.gene052840 |
| chr1.4 | exon | 20444248 | 20444341 | 20444248 | ID=MS.gene052840.t1.exon1;Parent=MS.gene052840.t1 |
| chr1.4 | CDS | 20444248 | 20444341 | 20444248 | ID=cds.MS.gene052840.t1;Parent=MS.gene052840.t1 |
| chr1.4 | exon | 20444562 | 20444716 | 20444562 | ID=MS.gene052840.t1.exon2;Parent=MS.gene052840.t1 |
| chr1.4 | CDS | 20444562 | 20444716 | 20444562 | ID=cds.MS.gene052840.t1;Parent=MS.gene052840.t1 |
| chr1.4 | exon | 20445101 | 20445380 | 20445101 | ID=MS.gene052840.t1.exon3;Parent=MS.gene052840.t1 |
| chr1.4 | CDS | 20445101 | 20445380 | 20445101 | ID=cds.MS.gene052840.t1;Parent=MS.gene052840.t1 |
| chr1.4 | exon | 20445528 | 20445656 | 20445528 | ID=MS.gene052840.t1.exon4;Parent=MS.gene052840.t1 |
| chr1.4 | CDS | 20445528 | 20445656 | 20445528 | ID=cds.MS.gene052840.t1;Parent=MS.gene052840.t1 |
| chr1.4 | exon | 20445748 | 20445806 | 20445748 | ID=MS.gene052840.t1.exon5;Parent=MS.gene052840.t1 |
| chr1.4 | CDS | 20445748 | 20445806 | 20445748 | ID=cds.MS.gene052840.t1;Parent=MS.gene052840.t1 |
| chr1.4 | exon | 20445890 | 20446132 | 20445890 | ID=MS.gene052840.t1.exon6;Parent=MS.gene052840.t1 |
| chr1.4 | CDS | 20445890 | 20446132 | 20445890 | ID=cds.MS.gene052840.t1;Parent=MS.gene052840.t1 |
| Gene Sequence |
| Protein sequence |
