Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052847.t1 | KEH40804.1 | 68.4 | 342 | 29 | 5 | 35 | 322 | 89 | 405 | 4.40E-94 | 354.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052847.t1 | A0A072VFJ7 | 68.4 | 342 | 29 | 5 | 35 | 322 | 89 | 405 | 3.2e-94 | 354.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052847.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052847.t1 | MTR_1g035570 | 63.663 | 344 | 46 | 5 | 33 | 322 | 87 | 405 | 9.15e-137 | 394 |
| MS.gene052847.t1 | MTR_1g035490 | 67.222 | 180 | 36 | 5 | 45 | 222 | 9 | 167 | 2.81e-59 | 193 |
| MS.gene052847.t1 | MTR_1g035490 | 82.857 | 105 | 17 | 1 | 209 | 313 | 227 | 330 | 5.98e-56 | 185 |
| MS.gene052847.t1 | MTR_1g035640 | 38.947 | 190 | 81 | 2 | 33 | 217 | 87 | 246 | 2.62e-32 | 125 |
| MS.gene052847.t1 | MTR_1g035640 | 48.454 | 97 | 25 | 1 | 216 | 312 | 394 | 465 | 9.68e-19 | 87.0 |
| MS.gene052847.t1 | MTR_1g035620 | 31.231 | 333 | 159 | 10 | 33 | 310 | 91 | 408 | 2.51e-29 | 116 |
| MS.gene052847.t1 | MTR_1g050845 | 34.759 | 187 | 69 | 6 | 33 | 214 | 91 | 229 | 1.25e-16 | 81.3 |
| MS.gene052847.t1 | MTR_1g035520 | 44.086 | 93 | 48 | 3 | 223 | 311 | 291 | 383 | 1.40e-16 | 80.1 |
| MS.gene052847.t1 | MTR_6g061070 | 45.745 | 94 | 42 | 3 | 223 | 310 | 379 | 469 | 1.39e-15 | 77.4 |
| MS.gene052847.t1 | MTR_1g035650 | 33.108 | 148 | 55 | 3 | 33 | 171 | 91 | 203 | 2.32e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.4:-20380312 | MS.gene052847:CDS |
| GGAGTGTGGAAGTGGGTTTA+AGG | 0.287521 | 1.4:-20381389 | MS.gene052847:CDS |
| TGATAGTGTTTCTCTATTGA+TGG | 0.293406 | 1.4:-20383951 | MS.gene052847:intron |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1.4:-20380482 | MS.gene052847:CDS |
| TTCTCTCATCAATCAACTTA+AGG | 0.303800 | 1.4:+20380171 | None:intergenic |
| CTTGGAGAACAAACAGCTAA+TGG | 0.342183 | 1.4:+20380113 | None:intergenic |
| GTGTTTGATGTTTCAATTGC+AGG | 0.344942 | 1.4:-20380143 | MS.gene052847:CDS |
| ATGCTCAGCTAATGGATTCT+TGG | 0.352041 | 1.4:+20380095 | None:intergenic |
| AATTATTATGAGAGTATTCA+TGG | 0.374261 | 1.4:-20380263 | MS.gene052847:CDS |
| TGGCAAAAGAAAAGCAAGTA+TGG | 0.385288 | 1.4:-20382115 | MS.gene052847:CDS |
| TACCGAATTGCCGCTGAGCT+TGG | 0.400116 | 1.4:+20384084 | None:intergenic |
| TCATTAACAGCTTCGGATGT+TGG | 0.413325 | 1.4:+20381617 | None:intergenic |
| ATAATTTATTTCTAAAGTAT+TGG | 0.414924 | 1.4:+20382338 | None:intergenic |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.426567 | 1.4:-20380206 | MS.gene052847:CDS |
| TACCAAGGAAAACTCTTGTA+TGG | 0.429636 | 1.4:-20381358 | MS.gene052847:CDS |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.4:-20380311 | MS.gene052847:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.455053 | 1.4:-20380488 | MS.gene052847:CDS |
| CAAGCTCAAAGGACAAGAAA+TGG | 0.458246 | 1.4:-20382135 | MS.gene052847:CDS |
| GATGATGAAGCCACAGAAGA+AGG | 0.459646 | 1.4:-20382213 | MS.gene052847:CDS |
| GGGATTCTCATTAACAGCTT+CGG | 0.464683 | 1.4:+20381610 | None:intergenic |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1.4:-20381651 | MS.gene052847:CDS |
| GAGCTTGGCTGAACTGCAAT+CGG | 0.466893 | 1.4:+20384099 | None:intergenic |
| TGTTCTCTTGAAAACTCACT+TGG | 0.469674 | 1.4:+20381459 | None:intergenic |
| TGTCATTATAACTTGAAAAG+AGG | 0.472819 | 1.4:+20381589 | None:intergenic |
| GTCATTATAACTTGAAAAGA+GGG | 0.482400 | 1.4:+20381590 | None:intergenic |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.486856 | 1.4:-20382291 | MS.gene052847:CDS |
| AGCCAAGCTCAGCGGCAATT+CGG | 0.488549 | 1.4:-20384086 | MS.gene052847:intron |
| ACTACCAAACAAAATTTCTC+AGG | 0.491692 | 1.4:-20382084 | MS.gene052847:intron |
| TCATGGCTGCAGATTCAGTA+AGG | 0.502175 | 1.4:-20380246 | MS.gene052847:CDS |
| TGAAAATGGGGAGGAAGTCA+TGG | 0.505391 | 1.4:-20380298 | MS.gene052847:CDS |
| ACTTTCTTTCCCTTCTTCTG+TGG | 0.511416 | 1.4:+20382203 | None:intergenic |
| CCAAAGGAGTTCATGAAAAG+AGG | 0.514812 | 1.4:-20380344 | MS.gene052847:CDS |
| ACTTTCTTGAACTTCTTCTG+TGG | 0.518992 | 1.4:+20382248 | None:intergenic |
| GAGTTCTGATGAAGTTGAAA+TGG | 0.525927 | 1.4:-20382163 | MS.gene052847:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.4:-20380324 | MS.gene052847:CDS |
| AATATCAAAGCAGTTGATGA+AGG | 0.544297 | 1.4:-20382312 | MS.gene052847:CDS |
| ACTTGACTCGCCTTCTTCAG+TGG | 0.548239 | 1.4:+20382281 | None:intergenic |
| TAATGAAAGGAGTGTGGAAG+TGG | 0.550991 | 1.4:-20381397 | MS.gene052847:CDS |
| CAATAAGAGTTGGTAATGAA+AGG | 0.551596 | 1.4:-20381410 | MS.gene052847:CDS |
| ACCAAGGAAAACTCTTGTAT+GGG | 0.558782 | 1.4:-20381357 | MS.gene052847:CDS |
| AACGACACTGCCATGTCTGT+TGG | 0.558864 | 1.4:+20384125 | None:intergenic |
| GGGACTGCAACAATAAGAGT+TGG | 0.570294 | 1.4:-20381420 | MS.gene052847:CDS |
| AGTTGGTAATGAAAGGAGTG+TGG | 0.575242 | 1.4:-20381403 | MS.gene052847:CDS |
| ATGATGAAGCCACAGAAGAA+GGG | 0.575475 | 1.4:-20382212 | MS.gene052847:CDS |
| ACTTACCAAGTGATAGCCAT+TGG | 0.585954 | 1.4:+20381556 | None:intergenic |
| GTATTTGTAGAGTGTACCAA+AGG | 0.588430 | 1.4:-20380360 | MS.gene052847:intron |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.588636 | 1.4:-20381660 | MS.gene052847:CDS |
| ATGACACAATCTTACGCCAA+TGG | 0.605919 | 1.4:-20381572 | MS.gene052847:CDS |
| ATTTATGAAAGAATGCAAAG+TGG | 0.609427 | 1.4:-20380213 | MS.gene052847:CDS |
| TTACGCCAATGGCTATCACT+TGG | 0.610546 | 1.4:-20381561 | MS.gene052847:intron |
| GTTCTCTTGAAAACTCACTT+GGG | 0.618431 | 1.4:+20381460 | None:intergenic |
| GCTGCAGATTCAGTAAGGGA+TGG | 0.619047 | 1.4:-20380241 | MS.gene052847:CDS |
| TTTAAGGTATTATGATACCA+AGG | 0.620069 | 1.4:-20381373 | MS.gene052847:CDS |
| TTTGGTGAAGAACACAGACC+CGG | 0.625237 | 1.4:-20380464 | MS.gene052847:intron |
| AAATGGCAAAGCAAGCTCAA+AGG | 0.625671 | 1.4:-20382146 | MS.gene052847:CDS |
| AAGGAAAACTCTTGTATGGG+AGG | 0.629797 | 1.4:-20381354 | MS.gene052847:intron |
| TTGTGGAGTTGAAAATGGGG+AGG | 0.632079 | 1.4:-20380307 | MS.gene052847:CDS |
| CATGGCTGCAGATTCAGTAA+GGG | 0.636738 | 1.4:-20380245 | MS.gene052847:CDS |
| AATGAAAGGAGTGTGGAAGT+GGG | 0.647980 | 1.4:-20381396 | MS.gene052847:CDS |
| CTTTGCAGGTAGTAACAAAG+TGG | 0.652952 | 1.4:-20381666 | MS.gene052847:intron |
| TCATCTTCATCCAACAGACA+TGG | 0.668320 | 1.4:-20384135 | MS.gene052847:CDS |
| TGCAGTTCAGCCAAGCTCAG+CGG | 0.670925 | 1.4:-20384094 | MS.gene052847:CDS |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.4:-20380310 | MS.gene052847:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAGTTTATATTTATAAT+AGG | - | chr1.4:20380806-20380825 | MS.gene052847:intron | 10.0% |
| !! | TTAAAATTATTTCAAATTCA+CGG | + | chr1.4:20383446-20383465 | None:intergenic | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1.4:20381909-20381928 | None:intergenic | 10.0% |
| !!! | CAAATATATCTAATTTTTTT+GGG | - | chr1.4:20383672-20383691 | MS.gene052847:intron | 10.0% |
| !!! | GTATTTTAAATTTAAGATTA+AGG | + | chr1.4:20383423-20383442 | None:intergenic | 10.0% |
| !!! | TATAATAATCTATTTTGTTT+AGG | + | chr1.4:20382548-20382567 | None:intergenic | 10.0% |
| !!! | TCAAATATATCTAATTTTTT+TGG | - | chr1.4:20383671-20383690 | MS.gene052847:intron | 10.0% |
| !!! | TTTTATTTTCAGATAATTTT+TGG | - | chr1.4:20382380-20382399 | MS.gene052847:intron | 10.0% |
| !!! | TTTTTTTATATAGTTTATGT+TGG | + | chr1.4:20380732-20380751 | None:intergenic | 10.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | + | chr1.4:20383657-20383676 | None:intergenic | 15.0% |
| !! | TAAAATTATTTCAAATTCAC+GGG | + | chr1.4:20383445-20383464 | None:intergenic | 15.0% |
| !! | TAAATATAAACTTCATTGTT+AGG | + | chr1.4:20380802-20380821 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1.4:20381795-20381814 | MS.gene052847:intron | 15.0% |
| !!! | ATGAATAACTTATTAGTTTT+TGG | - | chr1.4:20383376-20383395 | MS.gene052847:intron | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | + | chr1.4:20381268-20381287 | None:intergenic | 15.0% |
| !!! | TAAAAATATGTGACTTTTTT+TGG | - | chr1.4:20382418-20382437 | MS.gene052847:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1.4:20381796-20381815 | MS.gene052847:intron | 15.0% |
| !!! | TATTTTAAGGTTAAGATATA+TGG | - | chr1.4:20381881-20381900 | MS.gene052847:intron | 15.0% |
| !!! | TGATTTTTCTCTTTTTTTTT+TGG | - | chr1.4:20382183-20382202 | MS.gene052847:CDS | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1.4:20381757-20381776 | MS.gene052847:intron | 15.0% |
| !!! | TTGCAAATATAAACATTTTT+AGG | + | chr1.4:20380846-20380865 | None:intergenic | 15.0% |
| !! | AAAATTATCCTATGAAAATC+TGG | + | chr1.4:20381528-20381547 | None:intergenic | 20.0% |
| !! | ATAGTAACAGTGAATAAAAT+TGG | + | chr1.4:20382992-20383011 | None:intergenic | 20.0% |
| !! | ATATAAAAATGGCAGATTAA+GGG | - | chr1.4:20381050-20381069 | MS.gene052847:intron | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1.4:20381734-20381753 | MS.gene052847:intron | 20.0% |
| !! | ATGATAAGGTTATAAAAAAG+GGG | - | chr1.4:20383148-20383167 | MS.gene052847:intron | 20.0% |
| !! | CATGATAAGGTTATAAAAAA+GGG | - | chr1.4:20383147-20383166 | MS.gene052847:intron | 20.0% |
| !! | TAACAGAAAAAATTGAATAC+CGG | + | chr1.4:20383515-20383534 | None:intergenic | 20.0% |
| !! | TATATAAAAATGGCAGATTA+AGG | - | chr1.4:20381049-20381068 | MS.gene052847:intron | 20.0% |
| !! | TGTATTGTAATTCTTCAATT+TGG | - | chr1.4:20380217-20380236 | MS.gene052847:CDS | 20.0% |
| !! | TTCTGATTAATTAAGGATTA+GGG | - | chr1.4:20380768-20380787 | MS.gene052847:intron | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1.4:20381733-20381752 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1.4:20381734-20381753 | None:intergenic | 20.0% |
| !!! | AACACTTGAAAGATTTTAAA+GGG | - | chr1.4:20382804-20382823 | MS.gene052847:intron | 20.0% |
| !!! | AATTATTATGAGAGTATTCA+TGG | - | chr1.4:20383981-20384000 | MS.gene052847:intron | 20.0% |
| !!! | ACTGTTTTTTAACTGATTTT+TGG | - | chr1.4:20380250-20380269 | MS.gene052847:CDS | 20.0% |
| !!! | CATTAAGTTCTGATTAATTA+AGG | - | chr1.4:20380761-20380780 | MS.gene052847:intron | 20.0% |
| !!! | CTGTTTTTTAACTGATTTTT+GGG | - | chr1.4:20380251-20380270 | MS.gene052847:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1.4:20381756-20381775 | MS.gene052847:intron | 20.0% |
| !!! | TAAAGACATTTTTTGTAGTA+TGG | + | chr1.4:20381347-20381366 | None:intergenic | 20.0% |
| !!! | TAATCTGCCATTTTTATATA+AGG | + | chr1.4:20381049-20381068 | None:intergenic | 20.0% |
| !!! | TACTTTTAAGACTTATTCAA+TGG | - | chr1.4:20382292-20382311 | MS.gene052847:CDS | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1.4:20383802-20383821 | None:intergenic | 20.0% |
| ! | AAACACCTAGTAATTTCTTT+GGG | + | chr1.4:20383036-20383055 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1.4:20383932-20383951 | MS.gene052847:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1.4:20381836-20381855 | None:intergenic | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1.4:20383933-20383952 | MS.gene052847:intron | 25.0% |
| ! | AATTATGAAGCAGATTTAGT+TGG | - | chr1.4:20382357-20382376 | MS.gene052847:CDS | 25.0% |
| ! | AGATATATGTGGAGAAATAT+TGG | - | chr1.4:20381693-20381712 | MS.gene052847:intron | 25.0% |
| ! | ATTTATGAAAGAATGCAAAG+TGG | - | chr1.4:20384031-20384050 | MS.gene052847:intron | 25.0% |
| ! | CCATGATAAGGTTATAAAAA+AGG | - | chr1.4:20383146-20383165 | MS.gene052847:intron | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1.4:20381851-20381870 | MS.gene052847:intron | 25.0% |
| ! | GACAGTACCTTATATAAAAA+TGG | - | chr1.4:20381039-20381058 | MS.gene052847:intron | 25.0% |
| ! | GTCATTATAACTTGAAAAGA+GGG | + | chr1.4:20382657-20382676 | None:intergenic | 25.0% |
| ! | GTTCAATGGATATTATAGTT+AGG | - | chr1.4:20380464-20380483 | MS.gene052847:intron | 25.0% |
| ! | GTTCTGATTAATTAAGGATT+AGG | - | chr1.4:20380767-20380786 | MS.gene052847:intron | 25.0% |
| ! | TAGTACAATTCAGTGAAAAT+TGG | + | chr1.4:20381183-20381202 | None:intergenic | 25.0% |
| ! | TATATCTCTTTAAACTTTGC+AGG | - | chr1.4:20382564-20382583 | MS.gene052847:intron | 25.0% |
| ! | TATTTCTCCACATATATCTT+AGG | + | chr1.4:20381692-20381711 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTGAAAAG+AGG | + | chr1.4:20382658-20382677 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1.4:20381854-20381873 | MS.gene052847:intron | 25.0% |
| ! | TTGCTTACTAGTAAATGAAA+AGG | + | chr1.4:20380412-20380431 | None:intergenic | 25.0% |
| ! | TTTACTAGTAAGCAATTGTT+TGG | - | chr1.4:20380417-20380436 | MS.gene052847:intron | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1.4:20383801-20383820 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+AGG | - | chr1.4:20382803-20382822 | MS.gene052847:intron | 25.0% |
| !! | TATTTCTTTTGTCCATGATA+AGG | - | chr1.4:20383134-20383153 | MS.gene052847:intron | 25.0% |
| !! | TTTAAGGTATTATGATACCA+AGG | - | chr1.4:20382871-20382890 | MS.gene052847:intron | 25.0% |
| !!! | AATATGTGACTTTTTTTGGT+AGG | - | chr1.4:20382422-20382441 | MS.gene052847:intron | 25.0% |
| !!! | AGTTTTGATGATACACAAAT+AGG | - | chr1.4:20380695-20380714 | MS.gene052847:intron | 25.0% |
| !!! | CCTTTTTTATAACCTTATCA+TGG | + | chr1.4:20383149-20383168 | None:intergenic | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1.4:20381760-20381779 | MS.gene052847:intron | 25.0% |
| !!! | TGTTGCAATTTTTTGTCTAA+AGG | - | chr1.4:20382317-20382336 | MS.gene052847:CDS | 25.0% |
| !!! | TTTTTATATAAGGTACTGTC+TGG | + | chr1.4:20381039-20381058 | None:intergenic | 25.0% |
| AATTGAATACCGGATAAGTT+AGG | + | chr1.4:20383505-20383524 | None:intergenic | 30.0% | |
| ACTACCAAACAAAATTTCTC+AGG | - | chr1.4:20382160-20382179 | MS.gene052847:CDS | 30.0% | |
| AGGATGTCATGAAAATATTG+TGG | - | chr1.4:20383920-20383939 | MS.gene052847:intron | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1.4:20383934-20383953 | MS.gene052847:intron | 30.0% | |
| CATTGAACCTATTCTTTCTT+CGG | + | chr1.4:20380452-20380471 | None:intergenic | 30.0% | |
| GAAACACCTAGTAATTTCTT+TGG | + | chr1.4:20383037-20383056 | None:intergenic | 30.0% | |
| GCATACACTCAAAAATACAT+TGG | + | chr1.4:20381110-20381129 | None:intergenic | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1.4:20381698-20381717 | MS.gene052847:intron | 30.0% | |
| TCATAGTAGTGTTGTAAAGA+AGG | - | chr1.4:20383178-20383197 | MS.gene052847:intron | 30.0% | |
| TTCTCTCATCAATCAACTTA+AGG | + | chr1.4:20384076-20384095 | None:intergenic | 30.0% | |
| TTTATTGCCGAAGAAAGAAT+AGG | - | chr1.4:20380442-20380461 | MS.gene052847:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1.4:20381824-20381843 | MS.gene052847:intron | 30.0% | |
| ! | AACATGTTCCAGATTTTCAT+AGG | - | chr1.4:20381517-20381536 | MS.gene052847:intron | 30.0% |
| ! | ATCACCTGAGAAATTTTGTT+TGG | + | chr1.4:20382167-20382186 | None:intergenic | 30.0% |
| ! | ATTACTCATTTGCTAGACTA+AGG | - | chr1.4:20382212-20382231 | MS.gene052847:CDS | 30.0% |
| ! | CAAGAAAATTTCCTTTTGGA+TGG | + | chr1.4:20383229-20383248 | None:intergenic | 30.0% |
| ! | CACTTTTATCGTGTCATAAA+TGG | - | chr1.4:20381212-20381231 | MS.gene052847:intron | 30.0% |
| ! | CCAAAAGGAAATTTTCTTGA+GGG | - | chr1.4:20383230-20383249 | MS.gene052847:intron | 30.0% |
| ! | GATGAGTAACTTTGTGATTT+TGG | - | chr1.4:20380594-20380613 | MS.gene052847:intron | 30.0% |
| ! | GCATATTTTGTTCTTAGCAT+AGG | - | chr1.4:20380538-20380557 | MS.gene052847:intron | 30.0% |
| ! | TAATCCATGATTTGAAACAG+TGG | - | chr1.4:20382759-20382778 | MS.gene052847:intron | 30.0% |
| ! | TAGTTTATGTTGGATTTGCT+TGG | + | chr1.4:20380722-20380741 | None:intergenic | 30.0% |
| ! | TCCAAAAGGAAATTTTCTTG+AGG | - | chr1.4:20383229-20383248 | MS.gene052847:intron | 30.0% |
| ! | TGATAGTGTTTCTCTATTGA+TGG | - | chr1.4:20380293-20380312 | MS.gene052847:CDS | 30.0% |
| !! | AATATCAAAGCAGTTGATGA+AGG | - | chr1.4:20381932-20381951 | MS.gene052847:intron | 30.0% |
| !! | CAATAAGAGTTGGTAATGAA+AGG | - | chr1.4:20382834-20382853 | MS.gene052847:intron | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1.4:20381868-20381887 | MS.gene052847:intron | 30.0% |
| !! | TATGACACGATAAAAGTGTT+TGG | + | chr1.4:20381210-20381229 | None:intergenic | 30.0% |
| !! | TTCTAGCTTACATTGTAAGA+TGG | - | chr1.4:20381012-20381031 | MS.gene052847:intron | 30.0% |
| !! | TTTTGTTATGCATGTACAGA+AGG | - | chr1.4:20383724-20383743 | MS.gene052847:intron | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1.4:20381752-20381771 | None:intergenic | 30.0% |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | + | chr1.4:20380982-20381001 | None:intergenic | 30.0% |
| !!! | GACATTTTTTGTAGTATGGT+AGG | + | chr1.4:20381343-20381362 | None:intergenic | 30.0% |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | + | chr1.4:20381254-20381273 | None:intergenic | 30.0% |
| AAAGAATGCAAAGTGGAGAT+TGG | - | chr1.4:20384038-20384057 | MS.gene052847:intron | 35.0% | |
| ACAATTCAGTGAAAATTGGC+TGG | + | chr1.4:20381179-20381198 | None:intergenic | 35.0% | |
| ACCAAGGAAAACTCTTGTAT+GGG | - | chr1.4:20382887-20382906 | MS.gene052847:intron | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | - | chr1.4:20381314-20381333 | MS.gene052847:intron | 35.0% | |
| ACTTTATTACTGTCCAGTAC+AGG | + | chr1.4:20381312-20381331 | None:intergenic | 35.0% | |
| ACTTTCTTGAACTTCTTCTG+TGG | + | chr1.4:20381999-20382018 | None:intergenic | 35.0% | |
| AGTGATAGACCTAACTTATC+CGG | - | chr1.4:20383493-20383512 | MS.gene052847:intron | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1.4:20381742-20381761 | None:intergenic | 35.0% | |
| CGAAGAAAGAATAGGTTCAA+TGG | - | chr1.4:20380450-20380469 | MS.gene052847:intron | 35.0% | |
| CTGAATTTCTTTGTTGCAGA+GGG | - | chr1.4:20381664-20381683 | MS.gene052847:intron | 35.0% | |
| GATGAAGCATAACACATTCA+AGG | - | chr1.4:20383756-20383775 | MS.gene052847:intron | 35.0% | |
| GTATTTGTAGAGTGTACCAA+AGG | - | chr1.4:20383884-20383903 | MS.gene052847:intron | 35.0% | |
| GTTCTCTTGAAAACTCACTT+GGG | + | chr1.4:20382787-20382806 | None:intergenic | 35.0% | |
| GTTGTAAAGAAGGAAGACAT+TGG | - | chr1.4:20383188-20383207 | MS.gene052847:intron | 35.0% | |
| TACCAAGGAAAACTCTTGTA+TGG | - | chr1.4:20382886-20382905 | MS.gene052847:intron | 35.0% | |
| TCTCTATAAATGACCTGTAC+TGG | - | chr1.4:20381296-20381315 | MS.gene052847:intron | 35.0% | |
| TCTGAATTTCTTTGTTGCAG+AGG | - | chr1.4:20381663-20381682 | MS.gene052847:intron | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1.4:20381780-20381799 | MS.gene052847:intron | 35.0% | |
| TGGCAAAAGAAAAGCAAGTA+TGG | - | chr1.4:20382129-20382148 | MS.gene052847:CDS | 35.0% | |
| TGTTCTCTTGAAAACTCACT+TGG | + | chr1.4:20382788-20382807 | None:intergenic | 35.0% | |
| TTGTTCTCCAAGAATCCATT+AGG | - | chr1.4:20384142-20384161 | MS.gene052847:CDS | 35.0% | |
| TTTCACACTTTACACTTCAC+AGG | - | chr1.4:20381378-20381397 | MS.gene052847:CDS | 35.0% | |
| ! | CCCTCAAGAAAATTTCCTTT+TGG | + | chr1.4:20383233-20383252 | None:intergenic | 35.0% |
| ! | GAGTTCTGATGAAGTTGAAA+TGG | - | chr1.4:20382081-20382100 | MS.gene052847:intron | 35.0% |
| ! | GCATAACACATTCAAGGTTT+TGG | - | chr1.4:20383762-20383781 | MS.gene052847:intron | 35.0% |
| !! | ACAAAGCAAATCCACTTTTG+TGG | - | chr1.4:20380968-20380987 | MS.gene052847:intron | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1.4:20381770-20381789 | MS.gene052847:intron | 35.0% |
| AAATGGCAAAGCAAGCTCAA+AGG | - | chr1.4:20382098-20382117 | MS.gene052847:CDS | 40.0% | |
| AAGGAAAACTCTTGTATGGG+AGG | - | chr1.4:20382890-20382909 | MS.gene052847:intron | 40.0% | |
| ACTTACCAAGTGATAGCCAT+TGG | + | chr1.4:20382691-20382710 | None:intergenic | 40.0% | |
| ACTTCTATGAGCCATCCAAA+AGG | - | chr1.4:20383215-20383234 | MS.gene052847:intron | 40.0% | |
| ACTTTCTTTCCCTTCTTCTG+TGG | + | chr1.4:20382044-20382063 | None:intergenic | 40.0% | |
| ATGACACAATCTTACGCCAA+TGG | - | chr1.4:20382672-20382691 | MS.gene052847:intron | 40.0% | |
| ATGATGAAGCCACAGAAGAA+GGG | - | chr1.4:20381987-20382006 | MS.gene052847:intron | 40.0% | |
| ATGGCAGATTAAGGGATCAA+AGG | - | chr1.4:20381058-20381077 | MS.gene052847:intron | 40.0% | |
| CAAGCTCAAAGGACAAGAAA+TGG | - | chr1.4:20382109-20382128 | MS.gene052847:CDS | 40.0% | |
| CCAAAGGAGTTCATGAAAAG+AGG | - | chr1.4:20383900-20383919 | MS.gene052847:intron | 40.0% | |
| CCAAGCCCAAAGAAATTACT+AGG | - | chr1.4:20383028-20383047 | MS.gene052847:intron | 40.0% | |
| CCTAGTAATTTCTTTGGGCT+TGG | + | chr1.4:20383031-20383050 | None:intergenic | 40.0% | |
| CTTGGAGAACAAACAGCTAA+TGG | + | chr1.4:20384134-20384153 | None:intergenic | 40.0% | |
| CTTTGCAGGTAGTAACAAAG+TGG | - | chr1.4:20382578-20382597 | MS.gene052847:intron | 40.0% | |
| GAGGGTTCCTAAGATATATG+TGG | - | chr1.4:20381682-20381701 | MS.gene052847:intron | 40.0% | |
| GAGGTGGTTGGAAAATATTC+AGG | - | chr1.4:20382909-20382928 | MS.gene052847:intron | 40.0% | |
| GATGCTAGTGAGTGAGTATT+GGG | + | chr1.4:20381479-20381498 | None:intergenic | 40.0% | |
| GGAACCACTGTTTCAAATCA+TGG | + | chr1.4:20382766-20382785 | None:intergenic | 40.0% | |
| GGGATTCTCATTAACAGCTT+CGG | + | chr1.4:20382637-20382656 | None:intergenic | 40.0% | |
| TCATCTTCATCCAACAGACA+TGG | - | chr1.4:20380109-20380128 | MS.gene052847:CDS | 40.0% | |
| TCATTAACAGCTTCGGATGT+TGG | + | chr1.4:20382630-20382649 | None:intergenic | 40.0% | |
| TCTGTGTTCTGCATGTGAAA+TGG | - | chr1.4:20380647-20380666 | MS.gene052847:intron | 40.0% | |
| TGATGCTAGTGAGTGAGTAT+TGG | + | chr1.4:20381480-20381499 | None:intergenic | 40.0% | |
| TGGCAGATTAAGGGATCAAA+GGG | - | chr1.4:20381059-20381078 | MS.gene052847:intron | 40.0% | |
| ! | AATGAAAGGAGTGTGGAAGT+GGG | - | chr1.4:20382848-20382867 | MS.gene052847:intron | 40.0% |
| ! | CCTCTTTTCATGAACTCCTT+TGG | + | chr1.4:20383903-20383922 | None:intergenic | 40.0% |
| ! | TAATGAAAGGAGTGTGGAAG+TGG | - | chr1.4:20382847-20382866 | MS.gene052847:intron | 40.0% |
| ! | TCCCATACAAGAGTTTTCCT+TGG | + | chr1.4:20382891-20382910 | None:intergenic | 40.0% |
| ! | TTTCTTTGGGCTTGGTTTCT+TGG | + | chr1.4:20383023-20383042 | None:intergenic | 40.0% |
| !! | AGTTGGTAATGAAAGGAGTG+TGG | - | chr1.4:20382841-20382860 | MS.gene052847:intron | 40.0% |
| !! | GTTCAGTCTGTTTTTCTCTC+AGG | + | chr1.4:20381420-20381439 | None:intergenic | 40.0% |
| !! | TGGTGTTACTACTTTGGTGT+TGG | + | chr1.4:20381248-20381267 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1.4:20382604-20382623 | None:intergenic | 40.0% |
| AGGTAGTAACAAAGTGGCCA+TGG | - | chr1.4:20382584-20382603 | MS.gene052847:intron | 45.0% | |
| CATGGCTGCAGATTCAGTAA+GGG | - | chr1.4:20383999-20384018 | MS.gene052847:intron | 45.0% | |
| GAAAACTCTTGTATGGGAGG+TGG | - | chr1.4:20382893-20382912 | MS.gene052847:intron | 45.0% | |
| GATGATGAAGCCACAGAAGA+AGG | - | chr1.4:20381986-20382005 | MS.gene052847:intron | 45.0% | |
| GGATCAAAGGGAAAGACACA+CGG | - | chr1.4:20381071-20381090 | MS.gene052847:intron | 45.0% | |
| GGGACTGCAACAATAAGAGT+TGG | - | chr1.4:20382824-20382843 | MS.gene052847:intron | 45.0% | |
| TCATGGCTGCAGATTCAGTA+AGG | - | chr1.4:20383998-20384017 | MS.gene052847:intron | 45.0% | |
| TGAAAATGGGGAGGAAGTCA+TGG | - | chr1.4:20383946-20383965 | MS.gene052847:CDS | 45.0% | |
| TTACGCCAATGGCTATCACT+TGG | - | chr1.4:20382683-20382702 | MS.gene052847:intron | 45.0% | |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1.4:20383937-20383956 | MS.gene052847:intron | 45.0% | |
| TTTGGTGAAGAACACAGACC+CGG | - | chr1.4:20383780-20383799 | MS.gene052847:intron | 45.0% | |
| !! | AGTGAGTGAGTATTGGGCTA+AGG | + | chr1.4:20381473-20381492 | None:intergenic | 45.0% |
| !! | TATGATAAAAATTATATATT+TGG | - | chr1.4:20382463-20382482 | MS.gene052847:intron | 5.0% |
| !!! | CATATATATAATTTTTAATT+TGG | - | chr1.4:20383342-20383361 | MS.gene052847:intron | 5.0% |
| !!! | TAAATTTTATAATTGTAAAT+GGG | - | chr1.4:20383279-20383298 | MS.gene052847:intron | 5.0% |
| !!! | TTAAATTTTATAATTGTAAA+TGG | - | chr1.4:20383278-20383297 | MS.gene052847:intron | 5.0% |
| AACGACACTGCCATGTCTGT+TGG | + | chr1.4:20380122-20380141 | None:intergenic | 50.0% | |
| ACTCTTGTATGGGAGGTGGT+TGG | - | chr1.4:20382897-20382916 | MS.gene052847:intron | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1.4:20382593-20382612 | MS.gene052847:intron | 50.0% | |
| GAGCTTGGCTGAACTGCAAT+CGG | + | chr1.4:20380148-20380167 | None:intergenic | 50.0% | |
| GCTGCAGATTCAGTAAGGGA+TGG | - | chr1.4:20384003-20384022 | MS.gene052847:intron | 50.0% | |
| GGCTAAGGCTTAGAGAAGTG+AGG | + | chr1.4:20381458-20381477 | None:intergenic | 50.0% | |
| ! | ACTTGACTCGCCTTCTTCAG+TGG | + | chr1.4:20381966-20381985 | None:intergenic | 50.0% |
| ! | GGAGTGTGGAAGTGGGTTTA+AGG | - | chr1.4:20382855-20382874 | MS.gene052847:intron | 50.0% |
| AGCCAAGCTCAGCGGCAATT+CGG | - | chr1.4:20380158-20380177 | MS.gene052847:CDS | 55.0% | |
| AGCTCAGCGGCAATTCGGTA+AGG | - | chr1.4:20380163-20380182 | MS.gene052847:CDS | 55.0% | |
| GTGAAGAACACAGACCCGGT+AGG | - | chr1.4:20383784-20383803 | MS.gene052847:intron | 55.0% | |
| TACCGAATTGCCGCTGAGCT+TGG | + | chr1.4:20380163-20380182 | None:intergenic | 55.0% | |
| TGCAGTTCAGCCAAGCTCAG+CGG | - | chr1.4:20380150-20380169 | MS.gene052847:CDS | 55.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1.4:20381953-20381972 | MS.gene052847:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20380103 | 20384163 | 20380103 | ID=MS.gene052847 |
| chr1.4 | mRNA | 20380103 | 20384163 | 20380103 | ID=MS.gene052847.t1;Parent=MS.gene052847 |
| chr1.4 | exon | 20384087 | 20384163 | 20384087 | ID=MS.gene052847.t1.exon1;Parent=MS.gene052847.t1 |
| chr1.4 | CDS | 20384087 | 20384163 | 20384087 | ID=cds.MS.gene052847.t1;Parent=MS.gene052847.t1 |
| chr1.4 | exon | 20383943 | 20383967 | 20383943 | ID=MS.gene052847.t1.exon2;Parent=MS.gene052847.t1 |
| chr1.4 | CDS | 20383943 | 20383967 | 20383943 | ID=cds.MS.gene052847.t1;Parent=MS.gene052847.t1 |
| chr1.4 | exon | 20382085 | 20382376 | 20382085 | ID=MS.gene052847.t1.exon3;Parent=MS.gene052847.t1 |
| chr1.4 | CDS | 20382085 | 20382376 | 20382085 | ID=cds.MS.gene052847.t1;Parent=MS.gene052847.t1 |
| chr1.4 | exon | 20381562 | 20381680 | 20381562 | ID=MS.gene052847.t1.exon4;Parent=MS.gene052847.t1 |
| chr1.4 | CDS | 20381562 | 20381680 | 20381562 | ID=cds.MS.gene052847.t1;Parent=MS.gene052847.t1 |
| chr1.4 | exon | 20381355 | 20381487 | 20381355 | ID=MS.gene052847.t1.exon5;Parent=MS.gene052847.t1 |
| chr1.4 | CDS | 20381355 | 20381487 | 20381355 | ID=cds.MS.gene052847.t1;Parent=MS.gene052847.t1 |
| chr1.4 | exon | 20380465 | 20380523 | 20380465 | ID=MS.gene052847.t1.exon6;Parent=MS.gene052847.t1 |
| chr1.4 | CDS | 20380465 | 20380523 | 20380465 | ID=cds.MS.gene052847.t1;Parent=MS.gene052847.t1 |
| chr1.4 | exon | 20380103 | 20380372 | 20380103 | ID=MS.gene052847.t1.exon7;Parent=MS.gene052847.t1 |
| chr1.4 | CDS | 20380103 | 20380372 | 20380103 | ID=cds.MS.gene052847.t1;Parent=MS.gene052847.t1 |
| Gene Sequence |
| Protein sequence |
