Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052852.t1 | KEH40808.1 | 74.4 | 359 | 33 | 2 | 2 | 326 | 132 | 465 | 8.30E-117 | 430.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052852.t1 | A0A072VHA4 | 74.4 | 359 | 33 | 2 | 2 | 326 | 132 | 465 | 5.9e-117 | 430.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052852.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052852.t1 | MTR_1g035640 | 74.930 | 359 | 31 | 2 | 2 | 326 | 132 | 465 | 0.0 | 509 |
| MS.gene052852.t1 | MTR_1g035490 | 43.438 | 320 | 128 | 5 | 8 | 326 | 62 | 329 | 2.41e-83 | 255 |
| MS.gene052852.t1 | MTR_1g035620 | 40.549 | 328 | 132 | 13 | 3 | 324 | 138 | 408 | 2.19e-58 | 193 |
| MS.gene052852.t1 | MTR_1g050845 | 40.333 | 300 | 111 | 11 | 2 | 292 | 124 | 364 | 4.84e-44 | 161 |
| MS.gene052852.t1 | MTR_6g061070 | 36.842 | 304 | 148 | 10 | 34 | 325 | 199 | 470 | 2.17e-43 | 155 |
| MS.gene052852.t1 | MTR_1g035570 | 46.584 | 161 | 73 | 2 | 2 | 160 | 148 | 297 | 2.06e-39 | 143 |
| MS.gene052852.t1 | MTR_1g035570 | 67.010 | 97 | 32 | 0 | 230 | 326 | 299 | 395 | 2.24e-36 | 135 |
| MS.gene052852.t1 | MTR_8g103940 | 26.144 | 306 | 192 | 10 | 28 | 324 | 213 | 493 | 1.95e-22 | 97.8 |
| MS.gene052852.t1 | MTR_1g108780 | 24.658 | 292 | 190 | 9 | 42 | 324 | 186 | 456 | 3.16e-18 | 85.5 |
| MS.gene052852.t1 | MTR_1g035520 | 43.011 | 93 | 49 | 2 | 237 | 325 | 291 | 383 | 1.95e-14 | 73.9 |
| MS.gene052852.t1 | MTR_1g035540 | 58.333 | 48 | 20 | 0 | 115 | 162 | 31 | 78 | 4.59e-14 | 68.6 |
| MS.gene052852.t1 | MTR_5g044670 | 33.043 | 115 | 74 | 2 | 50 | 163 | 204 | 316 | 1.37e-13 | 70.9 |
| MS.gene052852.t1 | MTR_1g035510 | 40.000 | 90 | 49 | 2 | 191 | 278 | 136 | 222 | 4.98e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGAAGAGCTTGCACTTT+TGG | 0.204038 | 1.4:+20302610 | None:intergenic |
| CCATGGGAAGCATGCTCTTT+TGG | 0.213895 | 1.4:+20302414 | None:intergenic |
| TCCAAAAGTGCAAGCTCTTC+AGG | 0.235087 | 1.4:-20302611 | MS.gene052852:CDS |
| GCATGCACCAAAGAGATTTA+TGG | 0.255225 | 1.4:-20300905 | MS.gene052852:CDS |
| AAAGAATGTAAAGTGAAAAT+TGG | 0.268721 | 1.4:-20300760 | MS.gene052852:CDS |
| ACACAATACATTCAAGGTTT+TGG | 0.282064 | 1.4:-20301046 | MS.gene052852:CDS |
| AAAATTTGTGGAGTTGAAAA+TGG | 0.282812 | 1.4:-20300866 | MS.gene052852:CDS |
| CCTCTTTCCATAAATCTCTT+TGG | 0.284821 | 1.4:+20300898 | None:intergenic |
| TCTTCTAATTCTATGACTAT+TGG | 0.312742 | 1.4:-20303333 | MS.gene052852:CDS |
| CTTAGGGTTTGGTCCCTTGT+TGG | 0.342702 | 1.4:+20303206 | None:intergenic |
| CCTTGCAACTTCTTAGGGTT+TGG | 0.347894 | 1.4:+20303195 | None:intergenic |
| AATTTACCCTACCGGGTGTT+TGG | 0.375647 | 1.4:+20301017 | None:intergenic |
| TATAAAGAAGGGATCTCTTA+TGG | 0.386855 | 1.4:-20302685 | MS.gene052852:CDS |
| GAAGCTCAAATGATAACAAA+TGG | 0.392358 | 1.4:-20304463 | MS.gene052852:CDS |
| AAATTTGTGGAGTTGAAAAT+GGG | 0.407272 | 1.4:-20300865 | MS.gene052852:CDS |
| GTGTTTAAAGTTTCCATTGT+GGG | 0.423593 | 1.4:-20300697 | MS.gene052852:CDS |
| GATGAAACACAATACATTCA+AGG | 0.445828 | 1.4:-20301052 | MS.gene052852:CDS |
| CGTGGTTGTCAGTTCAGTAA+AGG | 0.468915 | 1.4:-20300799 | MS.gene052852:CDS |
| CCATGACAAGGTTATAAAGA+AGG | 0.469658 | 1.4:-20302697 | MS.gene052852:intron |
| CCAAAAGTGCAAGCTCTTCA+GGG | 0.474142 | 1.4:-20302610 | MS.gene052852:intron |
| AACTGACAACCACGAATACT+AGG | 0.474382 | 1.4:+20300808 | None:intergenic |
| ATTTATTATCCTAGTATTCG+TGG | 0.474870 | 1.4:-20300817 | MS.gene052852:CDS |
| TTACGCCCATGGTCATATCT+TGG | 0.485636 | 1.4:-20303817 | MS.gene052852:intron |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1.4:-20302501 | MS.gene052852:intron |
| GTTATCATTTGAGCTTCCAT+TGG | 0.498272 | 1.4:+20304469 | None:intergenic |
| ACTATATCCACTTTCATAGC+AGG | 0.506832 | 1.4:+20303372 | None:intergenic |
| CCAAAGAGATTTATGGAAAG+AGG | 0.511759 | 1.4:-20300898 | MS.gene052852:CDS |
| AAGACATTGGAGAAACTTGT+AGG | 0.516345 | 1.4:-20302443 | MS.gene052852:CDS |
| AAGACGATGGAGAAACTTGT+AGG | 0.516472 | 1.4:-20302639 | MS.gene052852:CDS |
| TCATACTTGAACAAATTTGA+AGG | 0.519341 | 1.4:-20303423 | MS.gene052852:CDS |
| ATAGTAATAGTGAATAAAAG+TGG | 0.519587 | 1.4:+20303237 | None:intergenic |
| CTAATTCTATGACTATTGGT+TGG | 0.519860 | 1.4:-20303329 | MS.gene052852:CDS |
| AAGCTCAAATGATAACAAAT+GGG | 0.523055 | 1.4:-20304462 | MS.gene052852:CDS |
| CATACTTGAACAAATTTGAA+GGG | 0.523429 | 1.4:-20303422 | MS.gene052852:CDS |
| GGGATTGCAAGCTTAAGAGT+TGG | 0.529065 | 1.4:-20303402 | MS.gene052852:CDS |
| ATGATCATGATATTCTAAAG+AGG | 0.534079 | 1.4:-20302467 | MS.gene052852:CDS |
| CATGACAAGGTTATAAAGAA+GGG | 0.535216 | 1.4:-20302696 | MS.gene052852:intron |
| GTTGTCAGTTCAGTAAAGGT+TGG | 0.536590 | 1.4:-20300795 | MS.gene052852:CDS |
| TACTATCACTAAAGCCAACA+AGG | 0.548522 | 1.4:-20303220 | MS.gene052852:CDS |
| ATTCTAAAGAGGAAAGACAT+TGG | 0.551775 | 1.4:-20302456 | MS.gene052852:CDS |
| CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1.4:-20302500 | MS.gene052852:intron |
| TATGATCTTGAAAAGTTGCA+TGG | 0.578670 | 1.4:+20303441 | None:intergenic |
| TGCAAGCTTAAGAGTTGGAG+AGG | 0.584782 | 1.4:-20303397 | MS.gene052852:CDS |
| GTGATCGTGATATTCTAAAG+AGG | 0.585254 | 1.4:-20302663 | MS.gene052852:CDS |
| CCAAAAGAGCATGCTTCCCA+TGG | 0.586590 | 1.4:-20302414 | MS.gene052852:intron |
| AGAGGACCCTGCTATGAAAG+TGG | 0.587637 | 1.4:-20303379 | MS.gene052852:CDS |
| GAAATACTTGTCTCCTAGAG+CGG | 0.589908 | 1.4:-20300738 | MS.gene052852:CDS |
| CCAAACCCTAAGAAGTTGCA+AGG | 0.590895 | 1.4:-20303195 | MS.gene052852:intron |
| ATGACACAAACTTACGCCCA+TGG | 0.594951 | 1.4:-20303828 | MS.gene052852:CDS |
| ATTTGTGGAGTTGAAAATGG+GGG | 0.611391 | 1.4:-20300863 | MS.gene052852:CDS |
| TTTGGTGAATTCCAAACACC+CGG | 0.613257 | 1.4:-20301028 | MS.gene052852:intron |
| TTTGTGGAGTTGAAAATGGG+GGG | 0.623702 | 1.4:-20300862 | MS.gene052852:CDS |
| CTATATCCACTTTCATAGCA+GGG | 0.623870 | 1.4:+20303373 | None:intergenic |
| AATTTGTGGAGTTGAAAATG+GGG | 0.630421 | 1.4:-20300864 | MS.gene052852:CDS |
| TGTGTTTAAAGTTTCCATTG+TGG | 0.641962 | 1.4:-20300698 | MS.gene052852:CDS |
| ATTCTAAAGAGGAAAGACGA+TGG | 0.644377 | 1.4:-20302652 | MS.gene052852:CDS |
| ACTATCACTAAAGCCAACAA+GGG | 0.662647 | 1.4:-20303219 | MS.gene052852:CDS |
| TATTGGGTTCTATCCCACAA+TGG | 0.665712 | 1.4:+20300684 | None:intergenic |
| ACTTACCAAGATATGACCAT+GGG | 0.667874 | 1.4:+20303812 | None:intergenic |
| AGGTAGGAACATTGAAGACA+CGG | 0.671619 | 1.4:-20303931 | MS.gene052852:CDS |
| TACTTACCAAGATATGACCA+TGG | 0.678715 | 1.4:+20303811 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATATTTAATAATTCA+AGG | - | chr1.4:20303711-20303730 | MS.gene052852:intron | 10.0% |
| !! | TAAAATTTCTTTCAAATTTA+TGG | + | chr1.4:20303008-20303027 | None:intergenic | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr1.4:20301477-20301496 | None:intergenic | 10.0% |
| !! | TATAAAAATATATAACCATT+TGG | - | chr1.4:20303947-20303966 | MS.gene052852:intron | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | + | chr1.4:20302225-20302244 | None:intergenic | 10.0% |
| !!! | AAAAATCTCTAAATTTTTTT+GGG | - | chr1.4:20303828-20303847 | MS.gene052852:CDS | 10.0% |
| !!! | AAATTTAGAGATTTTTAAAT+AGG | + | chr1.4:20303824-20303843 | None:intergenic | 10.0% |
| !!! | AATTAAAATTGTTATTAATC+TGG | - | chr1.4:20302852-20302871 | MS.gene052852:intron | 10.0% |
| !!! | AGAAAAATCTATTTTTATAT+TGG | - | chr1.4:20303605-20303624 | MS.gene052852:intron | 10.0% |
| !!! | CATTTTTTTAAATTGTTATT+TGG | - | chr1.4:20303331-20303350 | MS.gene052852:CDS | 10.0% |
| !!! | GAAAAATCTATTTTTATATT+GGG | - | chr1.4:20303606-20303625 | MS.gene052852:intron | 10.0% |
| !!! | GAATTATTAAATATTTTGTA+AGG | + | chr1.4:20303710-20303729 | None:intergenic | 10.0% |
| !!! | TAAAAATCTCTAAATTTTTT+TGG | - | chr1.4:20303827-20303846 | MS.gene052852:CDS | 10.0% |
| !!! | TAATAAAATTCATTTTTCAA+AGG | + | chr1.4:20300849-20300868 | None:intergenic | 10.0% |
| !!! | TATAATATCCTATTTTTATT+GGG | + | chr1.4:20303855-20303874 | None:intergenic | 10.0% |
| !!! | TTATAATATCCTATTTTTAT+TGG | + | chr1.4:20303856-20303875 | None:intergenic | 10.0% |
| !! | AAAAACTATTGATATGTTTA+AGG | - | chr1.4:20303768-20303787 | MS.gene052852:intron | 15.0% |
| !! | AAAACTATTGATATGTTTAA+GGG | - | chr1.4:20303769-20303788 | MS.gene052852:intron | 15.0% |
| !! | ATTACTTGAAATTAAGTTAA+GGG | + | chr1.4:20300943-20300962 | None:intergenic | 15.0% |
| !! | CAAAAATATAACTTAAAAGT+TGG | - | chr1.4:20301865-20301884 | MS.gene052852:intron | 15.0% |
| !! | CAAAATATTTAATAGTTCAA+GGG | - | chr1.4:20303270-20303289 | MS.gene052852:CDS | 15.0% |
| !! | TAAATTATTGATAAGTTTAG+AGG | + | chr1.4:20302878-20302897 | None:intergenic | 15.0% |
| !! | TATTACTTGAAATTAAGTTA+AGG | + | chr1.4:20300944-20300963 | None:intergenic | 15.0% |
| !! | TTTCTAATATATAAGTTTAG+AGG | + | chr1.4:20303590-20303609 | None:intergenic | 15.0% |
| !!! | AAACATTTTCAAAGAAATTA+AGG | + | chr1.4:20303220-20303239 | None:intergenic | 15.0% |
| !!! | AAAGATTTAGAGATTTTTAA+AGG | + | chr1.4:20303904-20303923 | None:intergenic | 15.0% |
| !!! | AAATCTCTATTTTTTTTTTG+TGG | - | chr1.4:20303875-20303894 | MS.gene052852:CDS | 15.0% |
| !!! | AATCTCTATTTTTTTTTTGT+GGG | - | chr1.4:20303876-20303895 | MS.gene052852:CDS | 15.0% |
| !!! | ATGAATTTTAAGTTTTTTGA+GGG | - | chr1.4:20301102-20301121 | MS.gene052852:intron | 15.0% |
| !!! | CAACTTTTAAGTTATATTTT+TGG | + | chr1.4:20301867-20301886 | None:intergenic | 15.0% |
| !!! | CATATCAATAGTTTTTATAT+AGG | + | chr1.4:20303764-20303783 | None:intergenic | 15.0% |
| !!! | TTAAGGATACATTTTTTTTA+GGG | + | chr1.4:20302942-20302961 | None:intergenic | 15.0% |
| !!! | TTTAAGGATACATTTTTTTT+AGG | + | chr1.4:20302943-20302962 | None:intergenic | 15.0% |
| !! | AAAATATATAACCATTTGGT+TGG | - | chr1.4:20303951-20303970 | MS.gene052852:intron | 20.0% |
| !! | AAAGAATGTAAAGTGAAAAT+TGG | - | chr1.4:20304399-20304418 | MS.gene052852:intron | 20.0% |
| !! | ACAAATTATTGATGTGTTTA+AGG | - | chr1.4:20303127-20303146 | MS.gene052852:intron | 20.0% |
| !! | AGGGTAAATTACATAAAATA+CGG | - | chr1.4:20304155-20304174 | MS.gene052852:intron | 20.0% |
| !! | ATAGTAATAGTGAATAAAAG+TGG | + | chr1.4:20301925-20301944 | None:intergenic | 20.0% |
| !! | ATGAAAATAGTAATCTAAAG+AGG | - | chr1.4:20303418-20303437 | MS.gene052852:CDS | 20.0% |
| !! | GCAAAATATTTAATAGTTCA+AGG | - | chr1.4:20303269-20303288 | MS.gene052852:CDS | 20.0% |
| !! | GTCATTAAAACTTCAAAAAA+GGG | + | chr1.4:20301316-20301335 | None:intergenic | 20.0% |
| !! | TCTAAAAATGTCTACTAATT+TGG | - | chr1.4:20301375-20301394 | MS.gene052852:intron | 20.0% |
| !! | TGTCATTAAAACTTCAAAAA+AGG | + | chr1.4:20301317-20301336 | None:intergenic | 20.0% |
| !! | TTGAACCTTACAAAATATTT+AGG | - | chr1.4:20303067-20303086 | MS.gene052852:intron | 20.0% |
| !!! | AAACTCTGAAATTAAGTTAA+AGG | - | chr1.4:20301165-20301184 | MS.gene052852:intron | 20.0% |
| !!! | ACTTTTAAATAATTTGCGAA+TGG | - | chr1.4:20303683-20303702 | MS.gene052852:intron | 20.0% |
| !!! | AGATTTGAAACAAAAATGAA+GGG | + | chr1.4:20300802-20300821 | None:intergenic | 20.0% |
| !!! | CACATCAATAATTTGTATAT+AGG | + | chr1.4:20303123-20303142 | None:intergenic | 20.0% |
| !!! | CATGAATTTTAAGTTTTTTG+AGG | - | chr1.4:20301101-20301120 | MS.gene052852:intron | 20.0% |
| !!! | CATTTTTTTTAGGGAATTTA+AGG | + | chr1.4:20302933-20302952 | None:intergenic | 20.0% |
| !!! | CTTAATTTCAAGTAATAGTT+TGG | - | chr1.4:20300947-20300966 | MS.gene052852:intron | 20.0% |
| !!! | CTTTTAAATAATTTGCGAAT+GGG | - | chr1.4:20303684-20303703 | MS.gene052852:intron | 20.0% |
| !!! | GAATTCCTAAATATTTTGTA+AGG | + | chr1.4:20303075-20303094 | None:intergenic | 20.0% |
| !!! | TCAGTAAATAAATTTTTCGT+TGG | - | chr1.4:20303736-20303755 | MS.gene052852:intron | 20.0% |
| !!! | TCATTTCAATTTTGTCTTTT+TGG | - | chr1.4:20300986-20301005 | MS.gene052852:intron | 20.0% |
| !!! | TTCATGTTTCAATTTTCTTA+TGG | + | chr1.4:20301087-20301106 | None:intergenic | 20.0% |
| ! | AAAAAAGGGATTCTCATTAT+TGG | + | chr1.4:20301302-20301321 | None:intergenic | 25.0% |
| ! | AAAATTTGTGGAGTTGAAAA+TGG | - | chr1.4:20304293-20304312 | MS.gene052852:intron | 25.0% |
| ! | AAAGTTAGAAGATTATACCA+TGG | + | chr1.4:20302765-20302784 | None:intergenic | 25.0% |
| ! | AAATTTGTGGAGTTGAAAAT+GGG | - | chr1.4:20304294-20304313 | MS.gene052852:intron | 25.0% |
| ! | AAGCTCAAATGATAACAAAT+GGG | - | chr1.4:20300697-20300716 | MS.gene052852:CDS | 25.0% |
| ! | AAGTTAGAAGATTATACCAT+GGG | + | chr1.4:20302764-20302783 | None:intergenic | 25.0% |
| ! | AATCTAAAGAGGAAATACAT+TGG | - | chr1.4:20303429-20303448 | MS.gene052852:CDS | 25.0% |
| ! | ATAGTGCACATTACAAAAAT+TGG | - | chr1.4:20301622-20301641 | MS.gene052852:intron | 25.0% |
| ! | ATTTATTATCCTAGTATTCG+TGG | - | chr1.4:20304342-20304361 | MS.gene052852:intron | 25.0% |
| ! | CAAAAATGAAGGGAAAAAAA+TGG | + | chr1.4:20300792-20300811 | None:intergenic | 25.0% |
| ! | CATACTTGAACAAATTTGAA+GGG | - | chr1.4:20301737-20301756 | MS.gene052852:intron | 25.0% |
| ! | TCATACTTGAACAAATTTGA+AGG | - | chr1.4:20301736-20301755 | MS.gene052852:intron | 25.0% |
| ! | TCTTCTAATTCTATGACTAT+TGG | - | chr1.4:20301826-20301845 | MS.gene052852:intron | 25.0% |
| ! | TGTGATTCATGAATTGAAAT+AGG | - | chr1.4:20301690-20301709 | MS.gene052852:intron | 25.0% |
| ! | TTAAATCTTTCAGCTCAAAA+AGG | + | chr1.4:20302903-20302922 | None:intergenic | 25.0% |
| !! | ATGATCATGATATTCTAAAG+AGG | - | chr1.4:20302692-20302711 | MS.gene052852:intron | 25.0% |
| !! | ATTTTGTGTGTAGAATCAAA+GGG | - | chr1.4:20304075-20304094 | MS.gene052852:intron | 25.0% |
| !! | CAGATTTGAAACAAAAATGA+AGG | + | chr1.4:20300803-20300822 | None:intergenic | 25.0% |
| !! | TTTAGATTTTACTATTGCGA+AGG | - | chr1.4:20303520-20303539 | MS.gene052852:intron | 25.0% |
| !! | TTTTATGTAATTTACCCTAC+CGG | + | chr1.4:20304153-20304172 | None:intergenic | 25.0% |
| !! | TTTTTATATTGGGAAAGAGA+AGG | - | chr1.4:20303616-20303635 | MS.gene052852:intron | 25.0% |
| !!! | ATTGGTCATGTATTTTGAAA+CGG | - | chr1.4:20301640-20301659 | MS.gene052852:intron | 25.0% |
| !!! | CATTTTTTTTAGGGAGTTTA+AGG | + | chr1.4:20302959-20302978 | None:intergenic | 25.0% |
| !!! | TAACAAATTAACTCTAAAGC+AGG | - | chr1.4:20301208-20301227 | MS.gene052852:intron | 25.0% |
| AAAAACCTTGCAACTTCTTA+GGG | + | chr1.4:20301972-20301991 | None:intergenic | 30.0% | |
| AATACATTGGAGAAACTTGT+AGG | - | chr1.4:20303442-20303461 | MS.gene052852:CDS | 30.0% | |
| AATCAAATGAATTTCTCACC+TGG | + | chr1.4:20300768-20300787 | None:intergenic | 30.0% | |
| AATTTCTTTCATCCATGACA+AGG | - | chr1.4:20302450-20302469 | MS.gene052852:CDS | 30.0% | |
| AATTTCTTTGATCCATGACA+AGG | - | chr1.4:20302259-20302278 | MS.gene052852:intron | 30.0% | |
| AATTTGTGGAGTTGAAAATG+GGG | - | chr1.4:20304295-20304314 | MS.gene052852:intron | 30.0% | |
| AGATCCTTTCTTTATAACCT+GGG | + | chr1.4:20303392-20303411 | None:intergenic | 30.0% | |
| AGCCTACAAAAATTGACATT+TGG | + | chr1.4:20304015-20304034 | None:intergenic | 30.0% | |
| ATCAAATGAATTTCTCACCT+GGG | + | chr1.4:20300767-20300786 | None:intergenic | 30.0% | |
| CAGTGTTCAGTTATTATTCA+TGG | - | chr1.4:20303095-20303114 | MS.gene052852:intron | 30.0% | |
| CATGAATAATAACTGAACAC+TGG | + | chr1.4:20303097-20303116 | None:intergenic | 30.0% | |
| CATGACAAGGTTATAAAGAA+GGG | - | chr1.4:20302272-20302291 | MS.gene052852:intron | 30.0% | |
| CTAATTCTATGACTATTGGT+TGG | - | chr1.4:20301830-20301849 | MS.gene052852:intron | 30.0% | |
| GAAGCTCAAATGATAACAAA+TGG | - | chr1.4:20300696-20300715 | MS.gene052852:CDS | 30.0% | |
| GATGAAACACAATACATTCA+AGG | - | chr1.4:20304107-20304126 | MS.gene052852:intron | 30.0% | |
| GCCTACAAAAATTGACATTT+GGG | + | chr1.4:20304014-20304033 | None:intergenic | 30.0% | |
| GTCATGGATCAAAGAAATTA+AGG | + | chr1.4:20302258-20302277 | None:intergenic | 30.0% | |
| GTCATGGATGAAAGAAATTA+AGG | + | chr1.4:20302449-20302468 | None:intergenic | 30.0% | |
| TATAAAGAAGGGATCTCTTA+TGG | - | chr1.4:20302474-20302493 | MS.gene052852:CDS | 30.0% | |
| TATGATCTTGAAAAGTTGCA+TGG | + | chr1.4:20301721-20301740 | None:intergenic | 30.0% | |
| TCTTCTTTATAACCTTGTCA+TGG | + | chr1.4:20302274-20302293 | None:intergenic | 30.0% | |
| TTTATGTAATTTACCCTACC+GGG | + | chr1.4:20304152-20304171 | None:intergenic | 30.0% | |
| ! | ACACAATACATTCAAGGTTT+TGG | - | chr1.4:20304113-20304132 | MS.gene052852:intron | 30.0% |
| ! | ATTCTAAAGAGGAAAGACAT+TGG | - | chr1.4:20302703-20302722 | MS.gene052852:intron | 30.0% |
| ! | CATTTTGTGTGTAGAATCAA+AGG | - | chr1.4:20304074-20304093 | MS.gene052852:intron | 30.0% |
| ! | GATTTGAAGCTTAATGCAAA+TGG | + | chr1.4:20301013-20301032 | None:intergenic | 30.0% |
| ! | GTGTTTAAAGTTTCCATTGT+GGG | - | chr1.4:20304462-20304481 | MS.gene052852:CDS | 30.0% |
| ! | TCCCAAATGTCAATTTTTGT+AGG | - | chr1.4:20304010-20304029 | MS.gene052852:intron | 30.0% |
| ! | TGTGTTTAAAGTTTCCATTG+TGG | - | chr1.4:20304461-20304480 | MS.gene052852:CDS | 30.0% |
| !! | AAATTAACTCTAAAGCAGGT+AGG | - | chr1.4:20301212-20301231 | MS.gene052852:intron | 30.0% |
| !! | CTTGGACATGTATTTTGAAA+CGG | + | chr1.4:20301419-20301438 | None:intergenic | 30.0% |
| !!! | TAAGTTTTTTGAGGGACAAA+AGG | - | chr1.4:20301110-20301129 | MS.gene052852:intron | 30.0% |
| !!! | TTTTGGGACCCAATAAAAAT+AGG | - | chr1.4:20303844-20303863 | MS.gene052852:CDS | 30.0% |
| AAGACATTGGAGAAACTTGT+AGG | - | chr1.4:20302716-20302735 | MS.gene052852:intron | 35.0% | |
| ACTATATCCACTTTCATAGC+AGG | + | chr1.4:20301790-20301809 | None:intergenic | 35.0% | |
| ACTATCACTAAAGCCAACAA+GGG | - | chr1.4:20301940-20301959 | MS.gene052852:intron | 35.0% | |
| ACTCTTAAGCAAAAATTCCC+AGG | - | chr1.4:20300747-20300766 | MS.gene052852:CDS | 35.0% | |
| ACTTACCAAGATATGACCAT+GGG | + | chr1.4:20301350-20301369 | None:intergenic | 35.0% | |
| AGATTGTCAAACCAACCAAA+TGG | + | chr1.4:20303965-20303984 | None:intergenic | 35.0% | |
| AGGATGTCGTGAAAAATTTG+TGG | - | chr1.4:20304281-20304300 | MS.gene052852:intron | 35.0% | |
| ATTTGTGGAGTTGAAAATGG+GGG | - | chr1.4:20304296-20304315 | MS.gene052852:intron | 35.0% | |
| CCAAAGAGATTTATGGAAAG+AGG | - | chr1.4:20304261-20304280 | MS.gene052852:intron | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | - | chr1.4:20302271-20302290 | MS.gene052852:intron | 35.0% | |
| CCTCTTTCCATAAATCTCTT+TGG | + | chr1.4:20304264-20304283 | None:intergenic | 35.0% | |
| CCTGACAAGGTTATAAAGAA+GGG | - | chr1.4:20302081-20302100 | MS.gene052852:intron | 35.0% | |
| CCTTCTTTATAACCTTGTCA+GGG | + | chr1.4:20302083-20302102 | None:intergenic | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | + | chr1.4:20302083-20302102 | None:intergenic | 35.0% | |
| CTATATCCACTTTCATAGCA+GGG | + | chr1.4:20301789-20301808 | None:intergenic | 35.0% | |
| GAAAAACCTTGCAACTTCTT+AGG | + | chr1.4:20301973-20301992 | None:intergenic | 35.0% | |
| GAGATCCTTTCTTTATAACC+TGG | + | chr1.4:20303393-20303412 | None:intergenic | 35.0% | |
| TAACGGTCAAAATTGTGCAT+TGG | + | chr1.4:20301460-20301479 | None:intergenic | 35.0% | |
| TACTATCACTAAAGCCAACA+AGG | - | chr1.4:20301939-20301958 | MS.gene052852:intron | 35.0% | |
| TACTTACCAAGATATGACCA+TGG | + | chr1.4:20301351-20301370 | None:intergenic | 35.0% | |
| TATAAAGAAGGGATCTCTTC+TGG | - | chr1.4:20302092-20302111 | MS.gene052852:intron | 35.0% | |
| TGTCAGGGATCAAAGAAAAT+AGG | + | chr1.4:20302068-20302087 | None:intergenic | 35.0% | |
| ! | ATTCTAAAGAGGAAAGACGA+TGG | - | chr1.4:20302507-20302526 | MS.gene052852:intron | 35.0% |
| ! | ATTTTCTTTGATCCCTGACA+AGG | - | chr1.4:20302068-20302087 | MS.gene052852:intron | 35.0% |
| ! | CCAAAAATGCATGCTTTTCA+GGG | - | chr1.4:20302167-20302186 | MS.gene052852:intron | 35.0% |
| ! | CTTTGTAGATCATGCAGTTT+TGG | + | chr1.4:20303474-20303493 | None:intergenic | 35.0% |
| ! | GTGATCGTGATATTCTAAAG+AGG | - | chr1.4:20302114-20302133 | MS.gene052852:intron | 35.0% |
| ! | GTGATCGTGATATTCTAAAG+TGG | - | chr1.4:20302114-20302133 | MS.gene052852:intron | 35.0% |
| ! | TCCAAAAATGCATGCTTTTC+AGG | - | chr1.4:20302166-20302185 | MS.gene052852:intron | 35.0% |
| !! | GAAAAGCATGCATTTTTGGA+AGG | + | chr1.4:20302166-20302185 | None:intergenic | 35.0% |
| !! | TTTGGTTGGTTTGACAATCT+TGG | - | chr1.4:20303965-20303984 | MS.gene052852:intron | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr1.4:20301415-20301434 | None:intergenic | 35.0% |
| !!! | GTCATGTATTTTGAAACGGA+GGG | - | chr1.4:20301644-20301663 | MS.gene052852:intron | 35.0% |
| AACTGACAACCACGAATACT+AGG | + | chr1.4:20304354-20304373 | None:intergenic | 40.0% | |
| AAGACACTCGAGAAACTTGT+AGG | - | chr1.4:20302329-20302348 | MS.gene052852:intron | 40.0% | |
| AAGACGATGGAGAAACTTGT+AGG | - | chr1.4:20302520-20302539 | MS.gene052852:intron | 40.0% | |
| AATTTCTTTGATCCATGCCC+AGG | - | chr1.4:20303372-20303391 | MS.gene052852:CDS | 40.0% | |
| AGGTAGGAACATTGAAGACA+CGG | - | chr1.4:20301228-20301247 | MS.gene052852:intron | 40.0% | |
| CATATGTGAAGTGGTTGACT+TGG | + | chr1.4:20301437-20301456 | None:intergenic | 40.0% | |
| CATGCCCAGGTTATAAAGAA+AGG | - | chr1.4:20303385-20303404 | MS.gene052852:CDS | 40.0% | |
| CCCTGACAAGGTTATAAAGA+AGG | - | chr1.4:20302080-20302099 | MS.gene052852:intron | 40.0% | |
| CCCTTCTTTATAACCTTGTC+AGG | + | chr1.4:20302084-20302103 | None:intergenic | 40.0% | |
| CTTTCTTTATAACCTGGGCA+TGG | + | chr1.4:20303387-20303406 | None:intergenic | 40.0% | |
| GAAATACTTGTCTCCTAGAG+CGG | - | chr1.4:20304421-20304440 | MS.gene052852:CDS | 40.0% | |
| GCATGCACCAAAGAGATTTA+TGG | - | chr1.4:20304254-20304273 | MS.gene052852:intron | 40.0% | |
| GTTGTCAGTTCAGTAAAGGT+TGG | - | chr1.4:20304364-20304383 | MS.gene052852:intron | 40.0% | |
| TTTGGTGAATTCCAAACACC+CGG | - | chr1.4:20304131-20304150 | MS.gene052852:intron | 40.0% | |
| TTTGTGGAGTTGAAAATGGG+GGG | - | chr1.4:20304297-20304316 | MS.gene052852:intron | 40.0% | |
| ! | ATTCTAAAGAGGAGAGACAC+TGG | - | chr1.4:20302125-20302144 | MS.gene052852:intron | 40.0% |
| ! | TTTTCTCATCAATCCGCTCT+AGG | + | chr1.4:20304437-20304456 | None:intergenic | 40.0% |
| !! | AAGAGCATGCACTTTTGGAA+GGG | + | chr1.4:20302356-20302375 | None:intergenic | 40.0% |
| !! | AAGAGCTTGCACTTTTGGAA+GGG | + | chr1.4:20302547-20302566 | None:intergenic | 40.0% |
| !! | CCCTGAAAAGCATGCATTTT+TGG | + | chr1.4:20302170-20302189 | None:intergenic | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr1.4:20301416-20301435 | None:intergenic | 40.0% |
| !!! | GGTCATGTATTTTGAAACGG+AGG | - | chr1.4:20301643-20301662 | MS.gene052852:intron | 40.0% |
| !!! | GTAGATCATGCAGTTTTGGA+CGG | + | chr1.4:20303470-20303489 | None:intergenic | 40.0% |
| AATTTACCCTACCGGGTGTT+TGG | + | chr1.4:20304145-20304164 | None:intergenic | 45.0% | |
| ATGACACAAACTTACGCCCA+TGG | - | chr1.4:20301331-20301350 | MS.gene052852:intron | 45.0% | |
| CCAAACCCTAAGAAGTTGCA+AGG | - | chr1.4:20301964-20301983 | MS.gene052852:intron | 45.0% | |
| CCTTGCAACTTCTTAGGGTT+TGG | + | chr1.4:20301967-20301986 | None:intergenic | 45.0% | |
| CGTGGTTGTCAGTTCAGTAA+AGG | - | chr1.4:20304360-20304379 | MS.gene052852:intron | 45.0% | |
| GAGACACTGGAGAAACTTGT+AGG | - | chr1.4:20302138-20302157 | MS.gene052852:intron | 45.0% | |
| GGGATTGCAAGCTTAAGAGT+TGG | - | chr1.4:20301757-20301776 | MS.gene052852:intron | 45.0% | |
| TGAAAATGGGGGGACAATCA+TGG | - | chr1.4:20304307-20304326 | MS.gene052852:intron | 45.0% | |
| TGAATTCCAAACACCCGGTA+GGG | - | chr1.4:20304136-20304155 | MS.gene052852:intron | 45.0% | |
| TGCAAGCTTAAGAGTTGGAG+AGG | - | chr1.4:20301762-20301781 | MS.gene052852:intron | 45.0% | |
| TTACGCCCATGGTCATATCT+TGG | - | chr1.4:20301342-20301361 | MS.gene052852:intron | 45.0% | |
| ! | CCAAAAGTGCAAGCTCTTCA+GGG | - | chr1.4:20302549-20302568 | MS.gene052852:intron | 45.0% |
| ! | CCAAAAGTGCATGCTCTTCA+GGG | - | chr1.4:20302358-20302377 | MS.gene052852:intron | 45.0% |
| ! | GAAGAGCTTGCACTTTTGGA+AGG | + | chr1.4:20302548-20302567 | None:intergenic | 45.0% |
| ! | GTGCATTGGCATATGTGAAG+TGG | + | chr1.4:20301446-20301465 | None:intergenic | 45.0% |
| ! | TCCAAAAGTGCAAGCTCTTC+AGG | - | chr1.4:20302548-20302567 | MS.gene052852:intron | 45.0% |
| ! | TCCAAAAGTGCATGCTCTTC+AGG | - | chr1.4:20302357-20302376 | MS.gene052852:intron | 45.0% |
| !! | GAAGAGCATGCACTTTTGGA+AGG | + | chr1.4:20302357-20302376 | None:intergenic | 45.0% |
| !! | GGAAGCATGCTCTTTTGGAA+GGG | + | chr1.4:20302743-20302762 | None:intergenic | 45.0% |
| !! | TATAAATTAATAAAAAAGTA+TGG | - | chr1.4:20301581-20301600 | MS.gene052852:intron | 5.0% |
| !! | TTAAATAAATAAAGAAATTA+AGG | + | chr1.4:20302416-20302435 | None:intergenic | 5.0% |
| !!! | CTATTTAAAATTAATATTTA+AGG | + | chr1.4:20302985-20303004 | None:intergenic | 5.0% |
| !!! | TATTAATTTTTTTTTTAAGA+CGG | + | chr1.4:20304044-20304063 | None:intergenic | 5.0% |
| AGAGGACCCTGCTATGAAAG+TGG | - | chr1.4:20301780-20301799 | MS.gene052852:intron | 50.0% | |
| GTGAATTCCAAACACCCGGT+AGG | - | chr1.4:20304135-20304154 | MS.gene052852:intron | 50.0% | |
| ! | CCAAAAGAGCATGCTTCCCA+TGG | - | chr1.4:20302745-20302764 | MS.gene052852:intron | 50.0% |
| ! | CCCTGAAGAGCTTGCACTTT+TGG | + | chr1.4:20302552-20302571 | None:intergenic | 50.0% |
| ! | CTTAGGGTTTGGTCCCTTGT+TGG | + | chr1.4:20301956-20301975 | None:intergenic | 50.0% |
| !! | CCATGGGAAGCATGCTCTTT+TGG | + | chr1.4:20302748-20302767 | None:intergenic | 50.0% |
| !! | CCCTGAAGAGCATGCACTTT+TGG | + | chr1.4:20302361-20302380 | None:intergenic | 50.0% |
| !! | GGGAAGCATGCTCTTTTGGA+AGG | + | chr1.4:20302744-20302763 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20300693 | 20304488 | 20300693 | ID=MS.gene052852 |
| chr1.4 | mRNA | 20300693 | 20304488 | 20300693 | ID=MS.gene052852.t1;Parent=MS.gene052852 |
| chr1.4 | exon | 20304413 | 20304488 | 20304413 | ID=MS.gene052852.t1.exon1;Parent=MS.gene052852.t1 |
| chr1.4 | CDS | 20304413 | 20304488 | 20304413 | ID=cds.MS.gene052852.t1;Parent=MS.gene052852.t1 |
| chr1.4 | exon | 20303818 | 20303951 | 20303818 | ID=MS.gene052852.t1.exon2;Parent=MS.gene052852.t1 |
| chr1.4 | CDS | 20303818 | 20303951 | 20303818 | ID=cds.MS.gene052852.t1;Parent=MS.gene052852.t1 |
| chr1.4 | exon | 20303196 | 20303469 | 20303196 | ID=MS.gene052852.t1.exon3;Parent=MS.gene052852.t1 |
| chr1.4 | CDS | 20303196 | 20303469 | 20303196 | ID=cds.MS.gene052852.t1;Parent=MS.gene052852.t1 |
| chr1.4 | exon | 20302611 | 20302709 | 20302611 | ID=MS.gene052852.t1.exon4;Parent=MS.gene052852.t1 |
| chr1.4 | CDS | 20302611 | 20302709 | 20302611 | ID=cds.MS.gene052852.t1;Parent=MS.gene052852.t1 |
| chr1.4 | exon | 20302415 | 20302513 | 20302415 | ID=MS.gene052852.t1.exon5;Parent=MS.gene052852.t1 |
| chr1.4 | CDS | 20302415 | 20302513 | 20302415 | ID=cds.MS.gene052852.t1;Parent=MS.gene052852.t1 |
| chr1.4 | exon | 20301029 | 20301093 | 20301029 | ID=MS.gene052852.t1.exon6;Parent=MS.gene052852.t1 |
| chr1.4 | CDS | 20301029 | 20301093 | 20301029 | ID=cds.MS.gene052852.t1;Parent=MS.gene052852.t1 |
| chr1.4 | exon | 20300693 | 20300926 | 20300693 | ID=MS.gene052852.t1.exon7;Parent=MS.gene052852.t1 |
| chr1.4 | CDS | 20300693 | 20300926 | 20300693 | ID=cds.MS.gene052852.t1;Parent=MS.gene052852.t1 |
| Gene Sequence |
| Protein sequence |
