Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052881.t1 | XP_024630392.1 | 87 | 322 | 25 | 3 | 1 | 322 | 1 | 305 | 1.60E-152 | 548.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052881.t1 | Q84R27 | 33.3 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 6.1e-12 | 73.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052881.t1 | A0A396JU70 | 86.9 | 320 | 25 | 3 | 1 | 320 | 1 | 303 | 1.3e-151 | 545.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene052881.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052881.t1 | MTR_4g119990 | 66.159 | 328 | 97 | 7 | 1 | 319 | 1 | 323 | 1.40e-144 | 412 |
MS.gene052881.t1 | MTR_6g043890 | 65.902 | 305 | 90 | 6 | 1 | 299 | 1 | 297 | 9.11e-134 | 384 |
MS.gene052881.t1 | MTR_1g035440 | 59.671 | 243 | 72 | 4 | 1 | 217 | 1 | 243 | 2.14e-76 | 234 |
MS.gene052881.t1 | MTR_3g098790 | 30.293 | 307 | 191 | 8 | 9 | 307 | 7 | 298 | 4.40e-33 | 125 |
MS.gene052881.t1 | MTR_5g044670 | 30.792 | 341 | 193 | 14 | 1 | 322 | 1 | 317 | 1.12e-32 | 124 |
MS.gene052881.t1 | MTR_7g050720 | 29.206 | 315 | 195 | 9 | 13 | 307 | 8 | 314 | 2.03e-31 | 120 |
MS.gene052881.t1 | MTR_1g108780 | 27.241 | 290 | 195 | 7 | 31 | 312 | 13 | 294 | 1.39e-30 | 120 |
MS.gene052881.t1 | MTR_1g035460 | 29.605 | 304 | 186 | 9 | 31 | 316 | 2 | 295 | 2.97e-30 | 118 |
MS.gene052881.t1 | MTR_3g061370 | 28.387 | 310 | 180 | 10 | 9 | 307 | 3 | 281 | 1.15e-29 | 114 |
MS.gene052881.t1 | MTR_7g050710 | 29.167 | 312 | 161 | 9 | 13 | 293 | 11 | 293 | 1.31e-29 | 115 |
MS.gene052881.t1 | MTR_7g050560 | 29.268 | 287 | 176 | 7 | 13 | 293 | 11 | 276 | 2.23e-29 | 114 |
MS.gene052881.t1 | MTR_8g103940 | 26.367 | 311 | 214 | 8 | 13 | 316 | 37 | 339 | 5.14e-29 | 116 |
MS.gene052881.t1 | MTR_3g061350 | 29.085 | 306 | 175 | 11 | 13 | 307 | 10 | 284 | 1.20e-28 | 112 |
MS.gene052881.t1 | MTR_3g061320 | 28.197 | 305 | 174 | 10 | 13 | 307 | 10 | 279 | 3.17e-28 | 110 |
MS.gene052881.t1 | MTR_1g035570 | 29.730 | 296 | 175 | 8 | 24 | 301 | 14 | 294 | 6.96e-28 | 112 |
MS.gene052881.t1 | MTR_6g061070 | 27.327 | 333 | 209 | 12 | 9 | 319 | 12 | 333 | 1.04e-27 | 112 |
MS.gene052881.t1 | MTR_3g061310 | 29.276 | 304 | 178 | 10 | 13 | 307 | 10 | 285 | 2.92e-27 | 108 |
MS.gene052881.t1 | MTR_1g035640 | 30.547 | 311 | 178 | 13 | 24 | 322 | 14 | 298 | 3.60e-27 | 111 |
MS.gene052881.t1 | MTR_3g061340 | 29.153 | 295 | 162 | 12 | 15 | 300 | 12 | 268 | 1.58e-26 | 106 |
MS.gene052881.t1 | MTR_7g050580 | 29.514 | 288 | 174 | 7 | 13 | 293 | 11 | 276 | 2.91e-26 | 106 |
MS.gene052881.t1 | MTR_3g061330 | 27.734 | 256 | 150 | 8 | 13 | 262 | 10 | 236 | 6.69e-24 | 98.6 |
MS.gene052881.t1 | MTR_1g033740 | 32.178 | 202 | 102 | 8 | 1 | 180 | 1 | 189 | 3.54e-22 | 92.4 |
MS.gene052881.t1 | MTR_1g035620 | 28.328 | 293 | 164 | 9 | 15 | 295 | 9 | 267 | 8.27e-22 | 95.5 |
MS.gene052881.t1 | MTR_7g050590 | 28.723 | 282 | 165 | 10 | 31 | 293 | 2 | 266 | 2.26e-21 | 92.4 |
MS.gene052881.t1 | MTR_1g035480 | 33.702 | 181 | 94 | 7 | 1 | 167 | 1 | 169 | 3.69e-21 | 89.4 |
MS.gene052881.t1 | MTR_3g061290 | 38.000 | 150 | 81 | 7 | 13 | 153 | 10 | 156 | 1.10e-20 | 88.6 |
MS.gene052881.t1 | MTR_1g050845 | 27.875 | 287 | 161 | 8 | 15 | 295 | 9 | 255 | 2.93e-20 | 92.0 |
MS.gene052881.t1 | MTR_1g035510 | 30.088 | 226 | 121 | 9 | 31 | 242 | 2 | 204 | 6.67e-20 | 87.0 |
MS.gene052881.t1 | MTR_1g035500 | 33.136 | 169 | 90 | 6 | 9 | 165 | 19 | 176 | 1.77e-19 | 85.1 |
MS.gene052881.t1 | MTR_3g005490 | 27.063 | 303 | 148 | 11 | 14 | 307 | 20 | 258 | 5.93e-19 | 85.1 |
MS.gene052881.t1 | MTR_1g021380 | 27.653 | 311 | 183 | 12 | 13 | 293 | 20 | 318 | 1.05e-16 | 80.1 |
MS.gene052881.t1 | MTR_3g005480 | 35.965 | 114 | 66 | 2 | 14 | 124 | 20 | 129 | 1.30e-16 | 78.6 |
MS.gene052881.t1 | MTR_5g070440 | 27.703 | 296 | 164 | 11 | 14 | 307 | 20 | 267 | 1.99e-16 | 78.2 |
MS.gene052881.t1 | MTR_1g035470 | 40.625 | 96 | 53 | 3 | 31 | 126 | 2 | 93 | 7.93e-16 | 73.6 |
MS.gene052881.t1 | MTR_3g005460 | 25.352 | 284 | 169 | 9 | 13 | 293 | 260 | 503 | 3.12e-15 | 76.6 |
MS.gene052881.t1 | MTR_3g005460 | 23.642 | 313 | 148 | 10 | 14 | 314 | 24 | 257 | 1.57e-13 | 71.6 |
MS.gene052881.t1 | MTR_1g035650 | 30.464 | 151 | 98 | 3 | 15 | 165 | 9 | 152 | 2.39e-14 | 71.2 |
MS.gene052881.t1 | MTR_3g005495 | 30.636 | 173 | 106 | 4 | 14 | 175 | 242 | 411 | 3.45e-14 | 73.2 |
MS.gene052881.t1 | MTR_3g005495 | 24.316 | 329 | 203 | 13 | 31 | 320 | 29 | 350 | 1.32e-11 | 65.5 |
MS.gene052881.t1 | MTR_1g021360 | 26.780 | 295 | 158 | 12 | 26 | 293 | 193 | 456 | 4.54e-14 | 73.2 |
MS.gene052881.t1 | MTR_1g021400 | 24.159 | 327 | 186 | 11 | 13 | 293 | 28 | 338 | 9.22e-13 | 68.6 |
MS.gene052881.t1 | MTR_3g005420 | 24.415 | 299 | 170 | 10 | 14 | 307 | 288 | 535 | 1.27e-12 | 68.6 |
MS.gene052881.t1 | MTR_3g061220 | 30.909 | 110 | 60 | 2 | 13 | 122 | 10 | 103 | 2.46e-11 | 60.5 |
MS.gene052881.t1 | MTR_4g068320 | 35.135 | 111 | 69 | 2 | 15 | 123 | 6 | 115 | 5.76e-11 | 63.5 |
MS.gene052881.t1 | MTR_1g021410 | 24.367 | 316 | 194 | 13 | 16 | 293 | 23 | 331 | 7.88e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052881.t1 | AT4G33280 | 24.620 | 329 | 197 | 8 | 13 | 315 | 23 | 326 | 3.42e-16 | 78.6 |
MS.gene052881.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 2.66e-14 | 71.2 |
MS.gene052881.t1 | AT3G18960 | 33.333 | 111 | 73 | 1 | 5 | 115 | 20 | 129 | 3.03e-14 | 70.9 |
MS.gene052881.t1 | AT1G49475 | 36.036 | 111 | 69 | 2 | 15 | 125 | 34 | 142 | 6.44e-14 | 69.7 |
MS.gene052881.t1 | AT4G01580 | 31.532 | 111 | 75 | 1 | 5 | 115 | 20 | 129 | 3.56e-13 | 67.4 |
Find 30 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1.1:-19926393 | None:intergenic |
GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1.1:+19926478 | MS.gene052881:CDS |
TTTGGAAACCTTAGAGTAAC+TGG | 0.248158 | 1.1:-19925248 | None:intergenic |
TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1.1:-19926589 | None:intergenic |
CTTCATCATCACGCGGTAAA+AGG | 0.264439 | 1.1:+19925519 | MS.gene052881:CDS |
CTCTTTAATGTGATTGTATT+CGG | 0.267780 | 1.1:+19925407 | MS.gene052881:CDS |
TACTCTAAGGTTTCCAAACT+TGG | 0.337891 | 1.1:+19925253 | MS.gene052881:CDS |
AAGTAGCTGTAATGATATTA+AGG | 0.342032 | 1.1:+19925779 | MS.gene052881:CDS |
TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1.1:+19925240 | MS.gene052881:CDS |
ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1.1:-19926474 | None:intergenic |
ATCAACTCGAATGAACAAAA+AGG | 0.376629 | 1.1:+19925587 | MS.gene052881:CDS |
GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1.1:-19926544 | None:intergenic |
TGTTTCTTGACAAATTCATT+TGG | 0.414955 | 1.1:-19926337 | None:intergenic |
TCTTCACTAGTTTCTCTTGA+AGG | 0.416839 | 1.1:-19925455 | None:intergenic |
TGAATTTGTCAAGAAACATA+TGG | 0.468376 | 1.1:+19926342 | MS.gene052881:CDS |
ATACATTGATAGAGATCTCT+TGG | 0.475972 | 1.1:+19925884 | MS.gene052881:CDS |
TCTAAGGTTTCCAAACTTGG+TGG | 0.476134 | 1.1:+19925256 | MS.gene052881:CDS |
CACACTTTCATAGACGGTGC+TGG | 0.484435 | 1.1:-19925551 | None:intergenic |
CTTCACTAGTTTCTCTTGAA+GGG | 0.485568 | 1.1:-19925454 | None:intergenic |
CAAGAAACATATGGACATGA+TGG | 0.508763 | 1.1:+19926351 | MS.gene052881:CDS |
TTCTTACACACTTTCATAGA+CGG | 0.530584 | 1.1:-19925557 | None:intergenic |
TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1.1:+19925215 | MS.gene052881:CDS |
GAACATGATCATCAGAGTAA+TGG | 0.556374 | 1.1:+19924721 | MS.gene052881:CDS |
AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1.1:+19926443 | MS.gene052881:CDS |
AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1.1:+19926439 | MS.gene052881:CDS |
TTGGAAACCTTAGAGTAACT+GGG | 0.594864 | 1.1:-19925247 | None:intergenic |
AAACATATGGACATGATGGA+AGG | 0.599445 | 1.1:+19926355 | MS.gene052881:CDS |
GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1.1:+19925416 | MS.gene052881:CDS |
AAGGATCTAAGCATGAGAAG+AGG | 0.639289 | 1.1:+19925606 | MS.gene052881:CDS |
GAGAATCCTTCATCATCACG+CGG | 0.748401 | 1.1:+19925512 | MS.gene052881:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATAAAAAATCTCATTA+TGG | - | chr1.1:19926099-19926118 | None:intergenic | 10.0% |
!!! | AACAATTTATGAAAATTTTA+TGG | + | chr1.1:19926665-19926684 | MS.gene052881:intron | 10.0% |
!!! | TATTTTTTGTCTTATTTTAT+AGG | + | chr1.1:19925709-19925728 | MS.gene052881:intron | 10.0% |
!! | GGAAATTCATTTAATATAAT+GGG | + | chr1.1:19926629-19926648 | MS.gene052881:intron | 15.0% |
!! | TATAATTTACCTTCAAAATA+AGG | - | chr1.1:19926592-19926611 | None:intergenic | 15.0% |
!!! | TGAAATTATTAATCTAAAAC+AGG | + | chr1.1:19926309-19926328 | MS.gene052881:intron | 15.0% |
!! | AAAATGTGATCTTATGATAT+TGG | + | chr1.1:19924991-19925010 | MS.gene052881:intron | 20.0% |
!! | AATAGTGATTGTTCAAATAT+AGG | + | chr1.1:19925035-19925054 | MS.gene052881:intron | 20.0% |
!! | AATCTCATTATGGTATAATT+TGG | - | chr1.1:19926089-19926108 | None:intergenic | 20.0% |
!! | AGAAAAACAATTTCTTCATT+AGG | - | chr1.1:19924943-19924962 | None:intergenic | 20.0% |
!! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1.1:19926396-19926415 | None:intergenic | 20.0% |
!! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1.1:19926477-19926496 | None:intergenic | 20.0% |
!! | CAAATATGCATTACAAAATT+TGG | + | chr1.1:19924839-19924858 | MS.gene052881:intron | 20.0% |
!! | CAATATAATAATTCATGTGT+TGG | + | chr1.1:19926710-19926729 | MS.gene052881:intron | 20.0% |
!! | CGGAAATTCATTTAATATAA+TGG | + | chr1.1:19926628-19926647 | MS.gene052881:intron | 20.0% |
!! | GAAAAACAATTTCTTCATTA+GGG | - | chr1.1:19924942-19924961 | None:intergenic | 20.0% |
!! | TATATTAAATGAATTTCCGA+TGG | - | chr1.1:19926627-19926646 | None:intergenic | 20.0% |
!! | TTCAAGATAAAGTAGTTAAA+TGG | - | chr1.1:19926293-19926312 | None:intergenic | 20.0% |
!! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1.1:19926395-19926414 | None:intergenic | 20.0% |
!!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1.1:19926478-19926497 | MS.gene052881:CDS | 20.0% |
!!! | TAAAATGTATGTGTATTGAT+AGG | + | chr1.1:19926255-19926274 | MS.gene052881:intron | 20.0% |
!!! | TGATCACTTTTATTTTTGAA+AGG | + | chr1.1:19925924-19925943 | MS.gene052881:intron | 20.0% |
!!! | TGTTGCTACTAATTTTTTTT+TGG | + | chr1.1:19925732-19925751 | MS.gene052881:intron | 20.0% |
!!! | TTTGAATGAATCACAATTTT+TGG | + | chr1.1:19925361-19925380 | MS.gene052881:CDS | 20.0% |
!!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1.1:19926395-19926414 | MS.gene052881:CDS | 20.0% |
! | AAGTAGCTGTAATGATATTA+AGG | + | chr1.1:19925779-19925798 | MS.gene052881:CDS | 25.0% |
! | CAAAAAATTTCTTCACTTTC+TGG | - | chr1.1:19925824-19925843 | None:intergenic | 25.0% |
! | CTATTCTTTGATGAGATTAA+TGG | + | chr1.1:19926030-19926049 | MS.gene052881:intron | 25.0% |
! | CTCTTTAATGTGATTGTATT+CGG | + | chr1.1:19925407-19925426 | MS.gene052881:CDS | 25.0% |
! | GAAGAATAACCTTAAAAAAG+TGG | - | chr1.1:19924750-19924769 | None:intergenic | 25.0% |
! | GAGAAAATAACAACTTGAAA+TGG | - | chr1.1:19926547-19926566 | None:intergenic | 25.0% |
! | TATATTTGATTAGTGTCCAT+CGG | + | chr1.1:19926608-19926627 | MS.gene052881:intron | 25.0% |
! | TGAATTTGTCAAGAAACATA+TGG | + | chr1.1:19926342-19926361 | MS.gene052881:CDS | 25.0% |
! | TGCATATTGTGAAAAATCAA+GGG | - | chr1.1:19924821-19924840 | None:intergenic | 25.0% |
! | TGTTTCTTGACAAATTCATT+TGG | - | chr1.1:19926340-19926359 | None:intergenic | 25.0% |
! | TTGCATATTGTGAAAAATCA+AGG | - | chr1.1:19924822-19924841 | None:intergenic | 25.0% |
!! | ATACCTTTTCACAAAACTTA+TGG | - | chr1.1:19925210-19925229 | None:intergenic | 25.0% |
!! | TACCAATTTTTCTTCTTGAA+GGG | - | chr1.1:19924779-19924798 | None:intergenic | 25.0% |
!! | TACCTTTTCACAAAACTTAT+GGG | - | chr1.1:19925209-19925228 | None:intergenic | 25.0% |
!! | TATGATGTTACATTTTGCAA+TGG | + | chr1.1:19925311-19925330 | MS.gene052881:CDS | 25.0% |
!! | TTACCAATTTTTCTTCTTGA+AGG | - | chr1.1:19924780-19924799 | None:intergenic | 25.0% |
!!! | GAATTCTCAATTTTTTTAGC+AGG | + | chr1.1:19925756-19925775 | MS.gene052881:intron | 25.0% |
!!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1.1:19925210-19925229 | MS.gene052881:CDS | 25.0% |
!!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1.1:19926549-19926568 | MS.gene052881:CDS | 25.0% |
!!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1.1:19926555-19926574 | MS.gene052881:CDS | 25.0% |
!!! | TTGAAAACTCCTTATTTTGA+AGG | + | chr1.1:19926580-19926599 | MS.gene052881:CDS | 25.0% |
AGTGATTGTTCAAATATAGG+TGG | + | chr1.1:19925038-19925057 | MS.gene052881:intron | 30.0% | |
ATACATTGATAGAGATCTCT+TGG | + | chr1.1:19925884-19925903 | MS.gene052881:CDS | 30.0% | |
ATCAACTCGAATGAACAAAA+AGG | + | chr1.1:19925587-19925606 | MS.gene052881:CDS | 30.0% | |
CCAATCACAATCTATTATGT+AGG | - | chr1.1:19926145-19926164 | None:intergenic | 30.0% | |
CCTACATAATAGATTGTGAT+TGG | + | chr1.1:19926142-19926161 | MS.gene052881:intron | 30.0% | |
TACCCTTCAAGAAGAAAAAT+TGG | + | chr1.1:19924774-19924793 | MS.gene052881:CDS | 30.0% | |
TTCTTACACACTTTCATAGA+CGG | - | chr1.1:19925560-19925579 | None:intergenic | 30.0% | |
! | ATGTTACATTTTGCAATGGT+TGG | + | chr1.1:19925315-19925334 | MS.gene052881:CDS | 30.0% |
!! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1.1:19926508-19926527 | MS.gene052881:CDS | 30.0% |
!! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1.1:19925215-19925234 | MS.gene052881:CDS | 30.0% |
!!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1.1:19925274-19925293 | MS.gene052881:CDS | 30.0% |
!!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1.1:19924738-19924757 | MS.gene052881:CDS | 30.0% |
!!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1.1:19925273-19925292 | MS.gene052881:CDS | 30.0% |
AAACAATCTGCACTAACTTG+TGG | + | chr1.1:19926439-19926458 | MS.gene052881:CDS | 35.0% | |
CAAGAAACATATGGACATGA+TGG | + | chr1.1:19926351-19926370 | MS.gene052881:CDS | 35.0% | |
GAACATGATCATCAGAGTAA+TGG | + | chr1.1:19924721-19924740 | MS.gene052881:CDS | 35.0% | |
GTGATTGTATTCGGTAAATG+CGG | + | chr1.1:19925416-19925435 | MS.gene052881:CDS | 35.0% | |
TAACAAACCCAGTTACTCTA+AGG | + | chr1.1:19925240-19925259 | MS.gene052881:CDS | 35.0% | |
TTGGAAACCTTAGAGTAACT+GGG | - | chr1.1:19925250-19925269 | None:intergenic | 35.0% | |
TTTGGAAACCTTAGAGTAAC+TGG | - | chr1.1:19925251-19925270 | None:intergenic | 35.0% | |
! | AAACATATGGACATGATGGA+AGG | + | chr1.1:19926355-19926374 | MS.gene052881:CDS | 35.0% |
! | ACTTTCTTTTCCACCAAGTT+TGG | - | chr1.1:19925269-19925288 | None:intergenic | 35.0% |
! | CTTCACTAGTTTCTCTTGAA+GGG | - | chr1.1:19925457-19925476 | None:intergenic | 35.0% |
! | TCTTCACTAGTTTCTCTTGA+AGG | - | chr1.1:19925458-19925477 | None:intergenic | 35.0% |
!! | GTTTTTGAGCATGTGAACAA+TGG | + | chr1.1:19925647-19925666 | MS.gene052881:CDS | 35.0% |
!! | TACTCTAAGGTTTCCAAACT+TGG | + | chr1.1:19925253-19925272 | MS.gene052881:CDS | 35.0% |
!! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1.1:19925204-19925223 | MS.gene052881:CDS | 35.0% |
AAGGATCTAAGCATGAGAAG+AGG | + | chr1.1:19925606-19925625 | MS.gene052881:CDS | 40.0% | |
TTGAGCATGTGAACAATGGT+TGG | + | chr1.1:19925651-19925670 | MS.gene052881:intron | 40.0% | |
! | AATCTGCACTAACTTGTGGT+TGG | + | chr1.1:19926443-19926462 | MS.gene052881:CDS | 40.0% |
! | TCATGTGTTGGTCTATTGCA+GGG | + | chr1.1:19926722-19926741 | MS.gene052881:intron | 40.0% |
! | TCTAAGGTTTCCAAACTTGG+TGG | + | chr1.1:19925256-19925275 | MS.gene052881:CDS | 40.0% |
! | TTCATGTGTTGGTCTATTGC+AGG | + | chr1.1:19926721-19926740 | MS.gene052881:intron | 40.0% |
ATTAGGGCTGCATCCAACAA+AGG | - | chr1.1:19924926-19924945 | None:intergenic | 45.0% | |
CTTCATCATCACGCGGTAAA+AGG | + | chr1.1:19925519-19925538 | MS.gene052881:CDS | 45.0% | |
GAGAATCCTTCATCATCACG+CGG | + | chr1.1:19925512-19925531 | MS.gene052881:CDS | 45.0% | |
! | CATCCAACAAAGGCTAGCTA+GGG | - | chr1.1:19924916-19924935 | None:intergenic | 45.0% |
!! | CTTTTACCGCGTGATGATGA+AGG | - | chr1.1:19925521-19925540 | None:intergenic | 45.0% |
CACACTTTCATAGACGGTGC+TGG | - | chr1.1:19925554-19925573 | None:intergenic | 50.0% | |
! | GCATCCAACAAAGGCTAGCT+AGG | - | chr1.1:19924917-19924936 | None:intergenic | 50.0% |
! | GTGTTGGTCTATTGCAGGGT+TGG | + | chr1.1:19926726-19926745 | MS.gene052881:intron | 50.0% |
!! | CATCCCTAGCTAGCCTTTGT+TGG | + | chr1.1:19924910-19924929 | MS.gene052881:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 19924709 | 19926753 | 19924709 | ID=MS.gene052881 |
chr1.1 | mRNA | 19924709 | 19926753 | 19924709 | ID=MS.gene052881.t1;Parent=MS.gene052881 |
chr1.1 | exon | 19924709 | 19924795 | 19924709 | ID=MS.gene052881.t1.exon1;Parent=MS.gene052881.t1 |
chr1.1 | CDS | 19924709 | 19924795 | 19924709 | ID=cds.MS.gene052881.t1;Parent=MS.gene052881.t1 |
chr1.1 | exon | 19925200 | 19925668 | 19925200 | ID=MS.gene052881.t1.exon2;Parent=MS.gene052881.t1 |
chr1.1 | CDS | 19925200 | 19925668 | 19925200 | ID=cds.MS.gene052881.t1;Parent=MS.gene052881.t1 |
chr1.1 | exon | 19925775 | 19925905 | 19925775 | ID=MS.gene052881.t1.exon3;Parent=MS.gene052881.t1 |
chr1.1 | CDS | 19925775 | 19925905 | 19925775 | ID=cds.MS.gene052881.t1;Parent=MS.gene052881.t1 |
chr1.1 | exon | 19926331 | 19926601 | 19926331 | ID=MS.gene052881.t1.exon4;Parent=MS.gene052881.t1 |
chr1.1 | CDS | 19926331 | 19926601 | 19926331 | ID=cds.MS.gene052881.t1;Parent=MS.gene052881.t1 |
chr1.1 | exon | 19926743 | 19926753 | 19926743 | ID=MS.gene052881.t1.exon5;Parent=MS.gene052881.t1 |
chr1.1 | CDS | 19926743 | 19926753 | 19926743 | ID=cds.MS.gene052881.t1;Parent=MS.gene052881.t1 |
Gene Sequence |
Protein sequence |