Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053021.t1 | RHN49743.1 | 85.4 | 356 | 42 | 3 | 1 | 355 | 9 | 355 | 3.00E-152 | 548.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053021.t1 | Q9FIM0 | 34.8 | 141 | 89 | 2 | 6 | 145 | 6 | 144 | 6.1e-13 | 76.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053021.t1 | G7KHI3 | 85.4 | 356 | 42 | 3 | 1 | 355 | 1 | 347 | 2.1e-152 | 548.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene053021.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053021.t1 | MTR_6g005450 | 85.112 | 356 | 43 | 3 | 1 | 355 | 1 | 347 | 0.0 | 607 |
MS.gene053021.t1 | MTR_6g018920 | 67.409 | 359 | 100 | 4 | 1 | 355 | 1 | 346 | 3.49e-169 | 475 |
MS.gene053021.t1 | MTR_6g005440 | 63.429 | 350 | 86 | 6 | 1 | 349 | 1 | 309 | 1.72e-151 | 429 |
MS.gene053021.t1 | MTR_1g114730 | 61.708 | 363 | 115 | 6 | 1 | 355 | 1 | 347 | 1.99e-141 | 405 |
MS.gene053021.t1 | MTR_4g107170 | 36.126 | 191 | 111 | 3 | 1 | 188 | 1 | 183 | 2.44e-30 | 116 |
MS.gene053021.t1 | MTR_2g049610 | 34.742 | 213 | 115 | 4 | 1 | 213 | 1 | 189 | 2.45e-29 | 113 |
MS.gene053021.t1 | MTR_2g049530 | 36.364 | 154 | 93 | 2 | 3 | 155 | 5 | 154 | 4.37e-27 | 106 |
MS.gene053021.t1 | MTR_4g045977 | 35.484 | 155 | 97 | 1 | 1 | 155 | 1 | 152 | 4.36e-26 | 107 |
MS.gene053021.t1 | MTR_2g049630 | 34.286 | 175 | 110 | 2 | 2 | 175 | 4 | 174 | 1.21e-24 | 103 |
MS.gene053021.t1 | MTR_1g115290 | 31.387 | 137 | 93 | 1 | 43 | 179 | 7 | 142 | 1.39e-20 | 87.4 |
MS.gene053021.t1 | MTR_0061s0010 | 60.345 | 58 | 20 | 1 | 29 | 86 | 1 | 55 | 1.64e-18 | 81.3 |
MS.gene053021.t1 | MTR_3g466890 | 34.146 | 164 | 92 | 6 | 3 | 157 | 2 | 158 | 1.21e-14 | 71.2 |
MS.gene053021.t1 | MTR_3g031240 | 30.952 | 126 | 80 | 3 | 1 | 125 | 1 | 120 | 2.58e-14 | 70.9 |
MS.gene053021.t1 | MTR_1g090710 | 34.426 | 122 | 71 | 4 | 1 | 122 | 1 | 113 | 2.79e-14 | 70.1 |
MS.gene053021.t1 | MTR_3g466980 | 24.681 | 235 | 144 | 10 | 1 | 216 | 1 | 221 | 1.99e-13 | 69.3 |
MS.gene053021.t1 | MTR_5g075380 | 30.303 | 165 | 101 | 5 | 1 | 157 | 1 | 159 | 2.17e-13 | 67.8 |
MS.gene053021.t1 | MTR_5g047580 | 30.469 | 128 | 76 | 3 | 1 | 128 | 1 | 115 | 2.95e-13 | 67.4 |
MS.gene053021.t1 | MTR_3g466830 | 33.636 | 110 | 66 | 3 | 3 | 111 | 2 | 105 | 4.43e-13 | 67.0 |
MS.gene053021.t1 | MTR_4g032620 | 38.136 | 118 | 58 | 5 | 1 | 117 | 1 | 104 | 4.72e-13 | 68.2 |
MS.gene053021.t1 | MTR_2g016210 | 34.545 | 110 | 60 | 5 | 2 | 108 | 3 | 103 | 4.61e-12 | 65.5 |
MS.gene053021.t1 | MTR_4g063790 | 29.375 | 160 | 98 | 4 | 1 | 151 | 1 | 154 | 5.24e-12 | 63.9 |
MS.gene053021.t1 | MTR_8g036130 | 33.962 | 106 | 61 | 4 | 1 | 103 | 1 | 100 | 5.43e-12 | 65.5 |
MS.gene053021.t1 | MTR_1g090697 | 28.994 | 169 | 93 | 5 | 1 | 155 | 1 | 156 | 6.03e-12 | 63.5 |
MS.gene053021.t1 | MTR_3g065100 | 26.531 | 245 | 143 | 8 | 1 | 216 | 1 | 237 | 7.74e-12 | 65.1 |
MS.gene053021.t1 | MTR_3g031100 | 28.571 | 126 | 83 | 3 | 1 | 125 | 1 | 120 | 1.37e-11 | 64.3 |
MS.gene053021.t1 | MTR_8g086290 | 27.632 | 152 | 80 | 5 | 2 | 136 | 12 | 150 | 6.96e-11 | 60.8 |
MS.gene053021.t1 | MTR_1g090783 | 40.000 | 80 | 42 | 3 | 3 | 82 | 2 | 75 | 7.39e-11 | 60.5 |
MS.gene053021.t1 | MTR_1g077390 | 31.250 | 112 | 71 | 3 | 1 | 112 | 1 | 106 | 7.99e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053021.t1 | AT5G55690 | 32.210 | 267 | 134 | 10 | 1 | 258 | 1 | 229 | 3.05e-25 | 103 |
MS.gene053021.t1 | AT5G55690 | 32.210 | 267 | 134 | 10 | 1 | 258 | 1 | 229 | 3.05e-25 | 103 |
MS.gene053021.t1 | AT5G58890 | 35.211 | 142 | 87 | 3 | 6 | 145 | 6 | 144 | 8.41e-18 | 83.2 |
MS.gene053021.t1 | AT1G22590 | 30.435 | 161 | 101 | 4 | 1 | 156 | 1 | 155 | 1.07e-14 | 71.6 |
MS.gene053021.t1 | AT3G18650 | 36.296 | 135 | 72 | 5 | 16 | 144 | 31 | 157 | 9.55e-14 | 72.0 |
MS.gene053021.t1 | AT3G05860 | 36.364 | 77 | 43 | 2 | 1 | 77 | 1 | 71 | 1.98e-12 | 67.0 |
MS.gene053021.t1 | AT3G05860 | 36.364 | 77 | 43 | 2 | 1 | 77 | 1 | 71 | 2.03e-12 | 66.2 |
MS.gene053021.t1 | AT3G05860 | 36.364 | 77 | 43 | 2 | 1 | 77 | 1 | 71 | 2.72e-12 | 66.6 |
MS.gene053021.t1 | AT1G65330 | 25.170 | 294 | 162 | 12 | 3 | 290 | 2 | 243 | 3.00e-12 | 66.6 |
MS.gene053021.t1 | AT2G28700 | 24.468 | 188 | 128 | 5 | 1 | 185 | 1 | 177 | 1.22e-11 | 65.5 |
MS.gene053021.t1 | AT1G31640 | 25.000 | 160 | 105 | 5 | 3 | 154 | 2 | 154 | 2.20e-11 | 65.5 |
MS.gene053021.t1 | AT5G27960 | 27.097 | 155 | 106 | 3 | 5 | 158 | 3 | 151 | 6.74e-11 | 63.2 |
Find 65 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTTCCTAGATTTCTCTTT+TGG | 0.200818 | 6.2:-1412858 | None:intergenic |
GTGTCTTTAGGCCATGTTTC+AGG | 0.215568 | 6.2:-1413002 | None:intergenic |
TCCCATGAACATCTACTTAA+TGG | 0.218158 | 6.2:+1413809 | MS.gene053021:CDS |
GTATTTCCATTGTAATAGTA+TGG | 0.279464 | 6.2:-1413719 | None:intergenic |
CTTCTACCATGAAGAGTCTA+AGG | 0.328249 | 6.2:+1413562 | MS.gene053021:CDS |
CTCTATGCTCCCACCTTTGA+AGG | 0.335130 | 6.2:+1412963 | MS.gene053021:CDS |
AATATGCTAGAAGGAGATCT+TGG | 0.345774 | 6.2:+1413278 | MS.gene053021:CDS |
GTAGATGTTCATGGGATGAT+AGG | 0.352051 | 6.2:-1413802 | None:intergenic |
GATGAATCTTTCAATTCTCT+TGG | 0.359377 | 6.2:+1413188 | MS.gene053021:CDS |
AAAATATTCTTGAACATCAT+AGG | 0.366937 | 6.2:-1413087 | None:intergenic |
TTGAAGAGTATTTGTATCAT+AGG | 0.374631 | 6.2:-1413834 | None:intergenic |
GAGGTTATTTGCTAGGATCT+TGG | 0.377459 | 6.2:+1413223 | MS.gene053021:CDS |
TACCTGCCTTAGACTCTTCA+TGG | 0.403438 | 6.2:-1413568 | None:intergenic |
TGTTCAACTACATGGATAGA+AGG | 0.415609 | 6.2:+1413864 | MS.gene053021:CDS |
TCATTCCAAAAGAGAAATCT+AGG | 0.418504 | 6.2:+1412853 | MS.gene053021:CDS |
GTATTGCAAAAGAGAAAGAT+TGG | 0.420157 | 6.2:+1412882 | MS.gene053021:CDS |
CTAAAGATGAATATGCTAGA+AGG | 0.421397 | 6.2:+1413269 | MS.gene053021:CDS |
CTTGGATTTGAGTCTAAGTA+AGG | 0.422502 | 6.2:-1413353 | None:intergenic |
AAACTTCTCTTTGCGCACTT+TGG | 0.438281 | 6.2:-1413144 | None:intergenic |
GCCACCAATGATCTCAAAAT+CGG | 0.446186 | 6.2:+1413656 | MS.gene053021:CDS |
AGCATCAACATCACAAAGAA+TGG | 0.454348 | 6.2:-1412931 | None:intergenic |
ATATGCTAGAAGGAGATCTT+GGG | 0.456719 | 6.2:+1413279 | MS.gene053021:CDS |
ATCCATTAAGTAGATGTTCA+TGG | 0.457427 | 6.2:-1413811 | None:intergenic |
ACTATAACACAACAGTTGAT+AGG | 0.461207 | 6.2:+1413054 | MS.gene053021:CDS |
TTTCAGGTTCAGCATACCCT+TGG | 0.467005 | 6.2:-1412986 | None:intergenic |
TTAAGATGAAGTATCAAACT+TGG | 0.470449 | 6.2:+1413165 | MS.gene053021:CDS |
AGCTCAAATGTTCAACTACA+TGG | 0.476126 | 6.2:+1413856 | MS.gene053021:CDS |
AACAATTGAGGTTATTTGCT+AGG | 0.476502 | 6.2:+1413216 | MS.gene053021:CDS |
AAGCTCTCAACCTTCTCCTA+TGG | 0.477911 | 6.2:+1413523 | MS.gene053021:CDS |
TTAAAATCAATCTGCTTGCA+AGG | 0.480005 | 6.2:-1413608 | None:intergenic |
AAGCTCTCAACCCTCTCATA+TGG | 0.482453 | 6.2:+1413487 | MS.gene053021:CDS |
TAAGTGGCCAAAACCCTAAA+GGG | 0.486281 | 6.2:-1413454 | None:intergenic |
TTATCACTAATATTCATCAA+TGG | 0.491553 | 6.2:-1413428 | None:intergenic |
ACGAGATTGAAGTAGCTACT+TGG | 0.492060 | 6.2:-1413371 | None:intergenic |
CTCTTGGAGATGAACAATTG+AGG | 0.499688 | 6.2:+1413204 | MS.gene053021:CDS |
ATGGTAGAAGCTCTGTGCTC+GGG | 0.509126 | 6.2:-1413549 | None:intergenic |
AGCATACCCTTGGCCTTCAA+AGG | 0.510389 | 6.2:-1412976 | None:intergenic |
GAGCTTTGACCCGATATAAG+TGG | 0.512541 | 6.2:-1413470 | None:intergenic |
ATAAGTGGCCAAAACCCTAA+AGG | 0.517760 | 6.2:-1413455 | None:intergenic |
GCTCCCACCTTTGAAGGCCA+AGG | 0.521825 | 6.2:+1412969 | MS.gene053021:CDS |
TGGCATTAGCATCAACATGA+TGG | 0.525287 | 6.2:-1413637 | None:intergenic |
CATGGTAGAAGCTCTGTGCT+CGG | 0.528284 | 6.2:-1413550 | None:intergenic |
TTAGCACCATACTATTACAA+TGG | 0.536934 | 6.2:+1413713 | MS.gene053021:CDS |
TGTTCGCAGCAAATGGGTCG+TGG | 0.537698 | 6.2:+1412813 | None:intergenic |
GGAAGAGTAGGCATAGCAAT+GGG | 0.540404 | 6.2:-1413761 | None:intergenic |
CTCTGTGCTCGGGAAACCAT+AGG | 0.549200 | 6.2:-1413539 | None:intergenic |
TCCATTAAGTAGATGTTCAT+GGG | 0.551523 | 6.2:-1413810 | None:intergenic |
TACCATGAAGAGTCTAAGGC+AGG | 0.558047 | 6.2:+1413566 | MS.gene053021:CDS |
TAAGATGAAGTATCAAACTT+GGG | 0.559208 | 6.2:+1413166 | MS.gene053021:CDS |
TGCAGTTGAAACCATATGAG+AGG | 0.566645 | 6.2:-1413498 | None:intergenic |
TACCCTTGGCCTTCAAAGGT+GGG | 0.569378 | 6.2:-1412972 | None:intergenic |
ATACCCTTGGCCTTCAAAGG+TGG | 0.570213 | 6.2:-1412973 | None:intergenic |
GGCATTAGCATCAACATGAT+GGG | 0.570214 | 6.2:-1413636 | None:intergenic |
TCACTAATATTCATCAATGG+AGG | 0.597003 | 6.2:-1413425 | None:intergenic |
TAAAATCAATCTGCTTGCAA+GGG | 0.599195 | 6.2:-1413607 | None:intergenic |
CTCCCACCTTTGAAGGCCAA+GGG | 0.600336 | 6.2:+1412970 | MS.gene053021:CDS |
AGGTGCAAAGAATTCTTCAA+AGG | 0.603453 | 6.2:+1413030 | MS.gene053021:CDS |
TATGCTAGAAGGAGATCTTG+GGG | 0.613088 | 6.2:+1413280 | MS.gene053021:CDS |
AGGAAGAGTAGGCATAGCAA+TGG | 0.623758 | 6.2:-1413762 | None:intergenic |
GCTCGGGAAACCATAGGAGA+AGG | 0.625390 | 6.2:-1413533 | None:intergenic |
GGGTCGTGGAAGAGTATCTG+TGG | 0.635324 | 6.2:+1412827 | MS.gene053021:CDS |
ATGGCCTAAAGACACAAAAG+AGG | 0.635374 | 6.2:+1413010 | MS.gene053021:CDS |
GGTATGCTGAACCTGAAACA+TGG | 0.639942 | 6.2:+1412991 | MS.gene053021:CDS |
GCAGTTGAAACCATATGAGA+GGG | 0.704855 | 6.2:-1413497 | None:intergenic |
ATGCTAGAAGGAGATCTTGG+GGG | 0.718359 | 6.2:+1413281 | MS.gene053021:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATATTCTTGAACATCAT+AGG | - | chr6.2:1413090-1413109 | None:intergenic | 20.0% |
!! | TTATCACTAATATTCATCAA+TGG | - | chr6.2:1413431-1413450 | None:intergenic | 20.0% |
!!! | TTCAAGAATATTTTAACGAA+AGG | + | chr6.2:1413096-1413115 | MS.gene053021:CDS | 20.0% |
! | ATTAGTGATAAAAACCCTTT+AGG | + | chr6.2:1413440-1413459 | MS.gene053021:CDS | 25.0% |
! | GTATTTCCATTGTAATAGTA+TGG | - | chr6.2:1413722-1413741 | None:intergenic | 25.0% |
! | TTAGTGATAAAAACCCTTTA+GGG | + | chr6.2:1413441-1413460 | MS.gene053021:CDS | 25.0% |
!! | TAAGATGAAGTATCAAACTT+GGG | + | chr6.2:1413166-1413185 | MS.gene053021:CDS | 25.0% |
!! | TTAAGATGAAGTATCAAACT+TGG | + | chr6.2:1413165-1413184 | MS.gene053021:CDS | 25.0% |
!!! | AGGTTTGAAAGATTTTGAAA+AGG | - | chr6.2:1413785-1413804 | None:intergenic | 25.0% |
!!! | TTGAAGAGTATTTGTATCAT+AGG | - | chr6.2:1413837-1413856 | None:intergenic | 25.0% |
AACAATTGAGGTTATTTGCT+AGG | + | chr6.2:1413216-1413235 | MS.gene053021:CDS | 30.0% | |
ACTATAACACAACAGTTGAT+AGG | + | chr6.2:1413054-1413073 | MS.gene053021:CDS | 30.0% | |
ATCCATTAAGTAGATGTTCA+TGG | - | chr6.2:1413814-1413833 | None:intergenic | 30.0% | |
CTAAAGATGAATATGCTAGA+AGG | + | chr6.2:1413269-1413288 | MS.gene053021:CDS | 30.0% | |
GATGAATCTTTCAATTCTCT+TGG | + | chr6.2:1413188-1413207 | MS.gene053021:CDS | 30.0% | |
GTATTGCAAAAGAGAAAGAT+TGG | + | chr6.2:1412882-1412901 | MS.gene053021:CDS | 30.0% | |
TAAAATCAATCTGCTTGCAA+GGG | - | chr6.2:1413610-1413629 | None:intergenic | 30.0% | |
TCACTAATATTCATCAATGG+AGG | - | chr6.2:1413428-1413447 | None:intergenic | 30.0% | |
TCATTCCAAAAGAGAAATCT+AGG | + | chr6.2:1412853-1412872 | MS.gene053021:CDS | 30.0% | |
TCCATTAAGTAGATGTTCAT+GGG | - | chr6.2:1413813-1413832 | None:intergenic | 30.0% | |
TGGTTTGATGAAAAAAGTTG+AGG | + | chr6.2:1412902-1412921 | MS.gene053021:CDS | 30.0% | |
TTAAAATCAATCTGCTTGCA+AGG | - | chr6.2:1413611-1413630 | None:intergenic | 30.0% | |
TTAGCACCATACTATTACAA+TGG | + | chr6.2:1413713-1413732 | MS.gene053021:CDS | 30.0% | |
! | ATCTTCCTAGATTTCTCTTT+TGG | - | chr6.2:1412861-1412880 | None:intergenic | 30.0% |
!! | AGATTTTGAAAAGGAAGAGT+AGG | - | chr6.2:1413776-1413795 | None:intergenic | 30.0% |
!! | GCAAGCAGATTGATTTTAAT+TGG | + | chr6.2:1413612-1413631 | MS.gene053021:CDS | 30.0% |
!!! | ATAAAAACCCTTTAGGGTTT+TGG | + | chr6.2:1413447-1413466 | MS.gene053021:CDS | 30.0% |
AATATGCTAGAAGGAGATCT+TGG | + | chr6.2:1413278-1413297 | MS.gene053021:CDS | 35.0% | |
AGCATCAACATCACAAAGAA+TGG | - | chr6.2:1412934-1412953 | None:intergenic | 35.0% | |
AGCTCAAATGTTCAACTACA+TGG | + | chr6.2:1413856-1413875 | MS.gene053021:CDS | 35.0% | |
AGGTGCAAAGAATTCTTCAA+AGG | + | chr6.2:1413030-1413049 | MS.gene053021:CDS | 35.0% | |
ATATGCTAGAAGGAGATCTT+GGG | + | chr6.2:1413279-1413298 | MS.gene053021:CDS | 35.0% | |
CTTGGATTTGAGTCTAAGTA+AGG | - | chr6.2:1413356-1413375 | None:intergenic | 35.0% | |
TCCCATGAACATCTACTTAA+TGG | + | chr6.2:1413809-1413828 | MS.gene053021:CDS | 35.0% | |
TGTTCAACTACATGGATAGA+AGG | + | chr6.2:1413864-1413883 | MS.gene053021:CDS | 35.0% | |
!!! | CATACCGATTTTGAGATCAT+TGG | - | chr6.2:1413663-1413682 | None:intergenic | 35.0% |
AAACTTCTCTTTGCGCACTT+TGG | - | chr6.2:1413147-1413166 | None:intergenic | 40.0% | |
ACGAGATTGAAGTAGCTACT+TGG | - | chr6.2:1413374-1413393 | None:intergenic | 40.0% | |
ATAAGTGGCCAAAACCCTAA+AGG | - | chr6.2:1413458-1413477 | None:intergenic | 40.0% | |
ATGGCCTAAAGACACAAAAG+AGG | + | chr6.2:1413010-1413029 | MS.gene053021:CDS | 40.0% | |
CTCTTGGAGATGAACAATTG+AGG | + | chr6.2:1413204-1413223 | MS.gene053021:CDS | 40.0% | |
CTTCTACCATGAAGAGTCTA+AGG | + | chr6.2:1413562-1413581 | MS.gene053021:CDS | 40.0% | |
GCAGTTGAAACCATATGAGA+GGG | - | chr6.2:1413500-1413519 | None:intergenic | 40.0% | |
GCCACCAATGATCTCAAAAT+CGG | + | chr6.2:1413656-1413675 | MS.gene053021:CDS | 40.0% | |
GGCATTAGCATCAACATGAT+GGG | - | chr6.2:1413639-1413658 | None:intergenic | 40.0% | |
GTAGATGTTCATGGGATGAT+AGG | - | chr6.2:1413805-1413824 | None:intergenic | 40.0% | |
TAAGTGGCCAAAACCCTAAA+GGG | - | chr6.2:1413457-1413476 | None:intergenic | 40.0% | |
TATGCTAGAAGGAGATCTTG+GGG | + | chr6.2:1413280-1413299 | MS.gene053021:CDS | 40.0% | |
TGCAGTTGAAACCATATGAG+AGG | - | chr6.2:1413501-1413520 | None:intergenic | 40.0% | |
TGGCATTAGCATCAACATGA+TGG | - | chr6.2:1413640-1413659 | None:intergenic | 40.0% | |
! | GAGGTTATTTGCTAGGATCT+TGG | + | chr6.2:1413223-1413242 | MS.gene053021:CDS | 40.0% |
! | TGCACCTCTTTTGTGTCTTT+AGG | - | chr6.2:1413017-1413036 | None:intergenic | 40.0% |
!! | AGGGTTTTGGCCACTTATAT+CGG | + | chr6.2:1413460-1413479 | MS.gene053021:CDS | 40.0% |
!!! | ACCGATTTTGAGATCATTGG+TGG | - | chr6.2:1413660-1413679 | None:intergenic | 40.0% |
AAGCTCTCAACCCTCTCATA+TGG | + | chr6.2:1413487-1413506 | MS.gene053021:CDS | 45.0% | |
AAGCTCTCAACCTTCTCCTA+TGG | + | chr6.2:1413523-1413542 | MS.gene053021:CDS | 45.0% | |
AGGAAGAGTAGGCATAGCAA+TGG | - | chr6.2:1413765-1413784 | None:intergenic | 45.0% | |
ATGCTAGAAGGAGATCTTGG+GGG | + | chr6.2:1413281-1413300 | MS.gene053021:CDS | 45.0% | |
GGAAGAGTAGGCATAGCAAT+GGG | - | chr6.2:1413764-1413783 | None:intergenic | 45.0% | |
GGTATGCTGAACCTGAAACA+TGG | + | chr6.2:1412991-1413010 | MS.gene053021:CDS | 45.0% | |
GTGTCTTTAGGCCATGTTTC+AGG | - | chr6.2:1413005-1413024 | None:intergenic | 45.0% | |
TACCTGCCTTAGACTCTTCA+TGG | - | chr6.2:1413571-1413590 | None:intergenic | 45.0% | |
! | GAGCTTTGACCCGATATAAG+TGG | - | chr6.2:1413473-1413492 | None:intergenic | 45.0% |
! | TACCATGAAGAGTCTAAGGC+AGG | + | chr6.2:1413566-1413585 | MS.gene053021:CDS | 45.0% |
!! | GGGTTTTGGCCACTTATATC+GGG | + | chr6.2:1413461-1413480 | MS.gene053021:CDS | 45.0% |
!! | TTTCAGGTTCAGCATACCCT+TGG | - | chr6.2:1412989-1413008 | None:intergenic | 45.0% |
ATGGTAGAAGCTCTGTGCTC+GGG | - | chr6.2:1413552-1413571 | None:intergenic | 50.0% | |
CATGGTAGAAGCTCTGTGCT+CGG | - | chr6.2:1413553-1413572 | None:intergenic | 50.0% | |
CTCTATGCTCCCACCTTTGA+AGG | + | chr6.2:1412963-1412982 | MS.gene053021:CDS | 50.0% | |
! | AGCATACCCTTGGCCTTCAA+AGG | - | chr6.2:1412979-1412998 | None:intergenic | 50.0% |
! | ATACCCTTGGCCTTCAAAGG+TGG | - | chr6.2:1412976-1412995 | None:intergenic | 50.0% |
! | TACCCTTGGCCTTCAAAGGT+GGG | - | chr6.2:1412975-1412994 | None:intergenic | 50.0% |
CTCTGTGCTCGGGAAACCAT+AGG | - | chr6.2:1413542-1413561 | None:intergenic | 55.0% | |
GCTCGGGAAACCATAGGAGA+AGG | - | chr6.2:1413536-1413555 | None:intergenic | 55.0% | |
! | CTCCCACCTTTGAAGGCCAA+GGG | + | chr6.2:1412970-1412989 | MS.gene053021:CDS | 55.0% |
!! | GGGTCGTGGAAGAGTATCTG+TGG | + | chr6.2:1412827-1412846 | MS.gene053021:CDS | 55.0% |
! | GCTCCCACCTTTGAAGGCCA+AGG | + | chr6.2:1412969-1412988 | MS.gene053021:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 1412825 | 1413892 | 1412825 | ID=MS.gene053021 |
chr6.2 | mRNA | 1412825 | 1413892 | 1412825 | ID=MS.gene053021.t1;Parent=MS.gene053021 |
chr6.2 | exon | 1412825 | 1413892 | 1412825 | ID=MS.gene053021.t1.exon1;Parent=MS.gene053021.t1 |
chr6.2 | CDS | 1412825 | 1413892 | 1412825 | ID=cds.MS.gene053021.t1;Parent=MS.gene053021.t1 |
Gene Sequence |
Protein sequence |