Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053022.t1 | XP_003618176.1 | 88.9 | 323 | 27 | 2 | 264 | 585 | 1 | 315 | 1.90E-156 | 562.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053022.t1 | Q9FIM0 | 35.7 | 143 | 85 | 3 | 269 | 408 | 6 | 144 | 2.4e-14 | 82.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053022.t1 | G7KHI2 | 88.9 | 323 | 27 | 2 | 264 | 585 | 1 | 315 | 1.4e-156 | 562.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene053022.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053022.t1 | MTR_6g005440 | 88.854 | 323 | 27 | 2 | 264 | 585 | 1 | 315 | 0.0 | 585 |
MS.gene053022.t1 | MTR_6g018920 | 63.295 | 346 | 103 | 3 | 264 | 585 | 1 | 346 | 6.06e-150 | 435 |
MS.gene053022.t1 | MTR_6g005450 | 62.644 | 348 | 103 | 4 | 264 | 585 | 1 | 347 | 7.08e-144 | 420 |
MS.gene053022.t1 | MTR_6g005430 | 90.987 | 233 | 21 | 0 | 1 | 233 | 1 | 233 | 5.71e-142 | 410 |
MS.gene053022.t1 | MTR_1g114730 | 58.989 | 356 | 103 | 6 | 264 | 585 | 1 | 347 | 3.99e-131 | 387 |
MS.gene053022.t1 | MTR_6g005430 | 90.556 | 180 | 17 | 0 | 1 | 180 | 1 | 180 | 1.62e-104 | 314 |
MS.gene053022.t1 | MTR_4g107170 | 41.026 | 156 | 89 | 1 | 264 | 419 | 1 | 153 | 8.36e-34 | 129 |
MS.gene053022.t1 | MTR_4g045977 | 38.587 | 184 | 108 | 3 | 264 | 447 | 1 | 179 | 6.01e-33 | 130 |
MS.gene053022.t1 | MTR_2g049610 | 39.877 | 163 | 92 | 2 | 264 | 426 | 1 | 157 | 2.67e-31 | 122 |
MS.gene053022.t1 | MTR_2g049530 | 37.662 | 154 | 91 | 2 | 266 | 418 | 5 | 154 | 2.46e-27 | 109 |
MS.gene053022.t1 | MTR_2g049630 | 34.392 | 189 | 106 | 4 | 265 | 440 | 4 | 187 | 1.58e-24 | 105 |
MS.gene053022.t1 | MTR_1g115290 | 36.842 | 114 | 71 | 1 | 307 | 420 | 8 | 120 | 7.15e-19 | 84.3 |
MS.gene053022.t1 | MTR_0061s0010 | 67.442 | 43 | 14 | 0 | 292 | 334 | 1 | 43 | 2.24e-15 | 73.6 |
MS.gene053022.t1 | MTR_3g466980 | 25.000 | 228 | 143 | 9 | 264 | 470 | 1 | 221 | 7.11e-13 | 68.6 |
MS.gene053022.t1 | MTR_3g031240 | 27.950 | 161 | 101 | 5 | 264 | 415 | 1 | 155 | 3.06e-12 | 65.9 |
MS.gene053022.t1 | MTR_3g088615 | 45.161 | 62 | 34 | 0 | 264 | 325 | 1 | 62 | 7.44e-12 | 64.7 |
MS.gene053022.t1 | MTR_3g102570 | 25.444 | 169 | 110 | 5 | 264 | 432 | 1 | 153 | 1.05e-11 | 66.6 |
MS.gene053022.t1 | MTR_5g021270 | 30.137 | 146 | 90 | 4 | 264 | 407 | 1 | 136 | 1.54e-11 | 65.1 |
MS.gene053022.t1 | MTR_5g021270 | 30.137 | 146 | 90 | 4 | 264 | 407 | 1 | 136 | 1.69e-11 | 64.7 |
MS.gene053022.t1 | MTR_1g029670 | 43.548 | 62 | 35 | 0 | 264 | 325 | 1 | 62 | 4.48e-11 | 62.4 |
MS.gene053022.t1 | MTR_8g086290 | 28.571 | 161 | 82 | 5 | 257 | 400 | 7 | 151 | 4.78e-11 | 62.4 |
MS.gene053022.t1 | MTR_3g466830 | 31.818 | 110 | 68 | 3 | 266 | 374 | 2 | 105 | 6.39e-11 | 61.6 |
MS.gene053022.t1 | MTR_8g087860 | 28.481 | 158 | 100 | 4 | 263 | 420 | 16 | 160 | 6.61e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053022.t1 | AT5G55690 | 40.000 | 145 | 79 | 2 | 264 | 407 | 1 | 138 | 4.38e-24 | 102 |
MS.gene053022.t1 | AT5G55690 | 40.000 | 145 | 79 | 2 | 264 | 407 | 1 | 138 | 4.38e-24 | 102 |
MS.gene053022.t1 | AT5G58890 | 35.461 | 141 | 88 | 2 | 269 | 408 | 6 | 144 | 8.97e-18 | 84.7 |
MS.gene053022.t1 | AT3G18650 | 34.328 | 134 | 76 | 4 | 279 | 407 | 31 | 157 | 4.94e-16 | 80.9 |
MS.gene053022.t1 | AT1G22590 | 29.487 | 156 | 99 | 3 | 264 | 414 | 1 | 150 | 5.76e-14 | 70.5 |
MS.gene053022.t1 | AT3G57390 | 32.593 | 135 | 69 | 4 | 264 | 382 | 1 | 129 | 2.19e-12 | 67.4 |
MS.gene053022.t1 | AT3G57390 | 33.333 | 135 | 68 | 4 | 264 | 382 | 1 | 129 | 2.97e-12 | 67.4 |
MS.gene053022.t1 | AT2G22630 | 55.102 | 49 | 22 | 0 | 264 | 312 | 1 | 49 | 9.00e-12 | 65.5 |
MS.gene053022.t1 | AT2G22630 | 55.102 | 49 | 22 | 0 | 264 | 312 | 1 | 49 | 9.00e-12 | 65.5 |
MS.gene053022.t1 | AT3G05860 | 36.364 | 77 | 43 | 2 | 264 | 340 | 1 | 71 | 7.51e-11 | 62.4 |
Find 106 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTCTTCATACTGATTT+TGG | 0.072050 | 6.2:-1409080 | None:intergenic |
TCCCATGAATATCTACTTTA+TGG | 0.106807 | 6.2:+1409220 | MS.gene053022:CDS |
CGTCATTACTTGTTAAAATT+TGG | 0.126991 | 6.2:+1402409 | MS.gene053022:CDS |
TTGATGAATAATATTGTAAA+TGG | 0.131880 | 6.2:-1402525 | None:intergenic |
GGAAATTGGTTAGGAGATTT+TGG | 0.164598 | 6.2:+1402457 | MS.gene053022:CDS |
TTGTCTTTAGGCCATGTTTC+AGG | 0.191776 | 6.2:-1408512 | None:intergenic |
TTCACCTTGGTTGGAATTCT+TGG | 0.210043 | 6.2:+1403789 | MS.gene053022:CDS |
GATGAATCTTACAATTCTTT+TGG | 0.252372 | 6.2:+1408698 | MS.gene053022:CDS |
AACAATTGAGGTCATTTATT+AGG | 0.253713 | 6.2:+1408726 | MS.gene053022:CDS |
CCAGGCATTGGATGCATCTT+AGG | 0.278948 | 6.2:+1401954 | MS.gene053022:intron |
TCTTGAACATCATAGGTCTT+AGG | 0.310978 | 6.2:-1408590 | None:intergenic |
AATATGCTTGCAAGGGTAAT+AGG | 0.325548 | 6.2:-1409011 | None:intergenic |
CCTTACATGACCTCAAATTC+AGG | 0.349045 | 6.2:+1408836 | MS.gene053022:CDS |
CAACATATCCTTGGCCTTCA+AGG | 0.352632 | 6.2:-1408487 | None:intergenic |
AGTGGAGAAAATAACATAAC+TGG | 0.353052 | 6.2:+1406615 | MS.gene053022:CDS |
AAGCTCTCAACCTTCCCTTA+TGG | 0.354140 | 6.2:+1408970 | MS.gene053022:CDS |
ATTTGTGCTGAGAAGGAATA+AGG | 0.356963 | 6.2:-1402553 | None:intergenic |
TGTGGAATATCTCTGGAAAT+TGG | 0.358829 | 6.2:+1402443 | MS.gene053022:CDS |
GTCCTGTACTTCAACTTTGC+TGG | 0.359856 | 6.2:-1403721 | None:intergenic |
GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | 6.2:+1408337 | MS.gene053022:CDS |
GAGCTTTGTTCCAATTGAAT+TGG | 0.369750 | 6.2:-1408953 | None:intergenic |
TGTCTATGTTTATGTTGATC+AGG | 0.373256 | 6.2:+1402590 | MS.gene053022:CDS |
AAAGATGAAGAATTTGTTGT+TGG | 0.387523 | 6.2:+1400163 | None:intergenic |
TCATGTAAGGAGAACTAATA+AGG | 0.392453 | 6.2:-1408823 | None:intergenic |
GGACTATAAGCTTCTTTGTC+TGG | 0.392836 | 6.2:+1403740 | MS.gene053022:CDS |
TGCGACAGTGCTTACAAGCT+TGG | 0.394563 | 6.2:+1402497 | MS.gene053022:CDS |
GCAAGCATATTGATGCTAAC+TGG | 0.394885 | 6.2:+1409023 | MS.gene053022:CDS |
GTAATAGGAGCTTTGTGAAC+TGG | 0.402630 | 6.2:-1408996 | None:intergenic |
TTGAATACTATCTATATCAT+AGG | 0.410651 | 6.2:-1409245 | None:intergenic |
AAAATATTCTTGAACATCAT+AGG | 0.416188 | 6.2:-1408597 | None:intergenic |
GATCAAAAGTTCACCTTGGT+TGG | 0.417100 | 6.2:+1403780 | MS.gene053022:CDS |
TATCCTTGGCCTTCAAGGTT+GGG | 0.419769 | 6.2:-1408482 | None:intergenic |
ATTACTTGTTAAAATTTGGC+TGG | 0.419900 | 6.2:+1402413 | MS.gene053022:CDS |
CTGTATGCTCCCAACCTTGA+AGG | 0.420817 | 6.2:+1408473 | MS.gene053022:CDS |
TGATGAATAATATTGTAAAT+GGG | 0.426786 | 6.2:-1402524 | None:intergenic |
AACATCAACATCACAAAGAA+TGG | 0.436469 | 6.2:-1408441 | None:intergenic |
AAAGATATGTGGAATATCTC+TGG | 0.437181 | 6.2:+1402436 | MS.gene053022:CDS |
AGGCTACTTCGTTCCATTCG+TGG | 0.443877 | 6.2:-1409284 | None:intergenic |
ATCCATAAAGTAGATATTCA+TGG | 0.445056 | 6.2:-1409222 | None:intergenic |
GAAGTAGTAGGCATAGCAAT+AGG | 0.447717 | 6.2:-1409175 | None:intergenic |
ACAAGTAGCTGAAGATGCTT+TGG | 0.447757 | 6.2:+1402338 | MS.gene053022:intron |
AAGATGAAGAATTTGTTGTT+GGG | 0.449039 | 6.2:+1400164 | None:intergenic |
ACTATGACACAACAATTGAT+AGG | 0.455411 | 6.2:+1408564 | MS.gene053022:CDS |
TAGTTAGAAGCACTATTAAG+AGG | 0.459244 | 6.2:-1400426 | None:intergenic |
ATCTATGGAACTCATTCAAA+AGG | 0.463531 | 6.2:+1408352 | MS.gene053022:CDS |
TTAACAAGTAATGACGTCAA+TGG | 0.463593 | 6.2:-1402402 | None:intergenic |
TTATATAGTAAAACATATAG+TGG | 0.464361 | 6.2:+1406597 | MS.gene053022:intron |
AATATCTCTGGAAATTGGTT+AGG | 0.465889 | 6.2:+1402448 | MS.gene053022:CDS |
TAACAAGTAATGACGTCAAT+GGG | 0.466034 | 6.2:-1402401 | None:intergenic |
TTATCACAAATATTCATCAA+TGG | 0.474002 | 6.2:-1408911 | None:intergenic |
ATATTGTGTTCATAGAAAAT+GGG | 0.480214 | 6.2:+1408317 | MS.gene053022:intron |
CCTGAATTTGAGGTCATGTA+AGG | 0.483276 | 6.2:-1408836 | None:intergenic |
ACATAAACATAGACAGAGAA+TGG | 0.485034 | 6.2:-1402582 | None:intergenic |
AAAGTAGATATTCATGGGAT+AGG | 0.486977 | 6.2:-1409216 | None:intergenic |
TTTCAGGTTCAACATATCCT+TGG | 0.488478 | 6.2:-1408496 | None:intergenic |
TTTGTGAACTGGAAACCATA+AGG | 0.489071 | 6.2:-1408985 | None:intergenic |
TACCAGAATAGCGAAAATTA+CGG | 0.489276 | 6.2:-1400452 | None:intergenic |
AATTTGGCTGGAAAGATATG+TGG | 0.496007 | 6.2:+1402425 | MS.gene053022:CDS |
TCGTAGCGATTCATTAAACT+TGG | 0.496983 | 6.2:+1402374 | MS.gene053022:CDS |
TGCCAGCAAAGTTGAAGTAC+AGG | 0.498946 | 6.2:+1403719 | MS.gene053022:CDS |
ACATAGACAGAGAATGGATT+GGG | 0.500649 | 6.2:-1402576 | None:intergenic |
ATATCCTTGGCCTTCAAGGT+TGG | 0.502086 | 6.2:-1408483 | None:intergenic |
GAAGTTGGTACCTGAATTTG+AGG | 0.503776 | 6.2:-1408846 | None:intergenic |
TGATGCTAACTGGACCCATC+AGG | 0.505363 | 6.2:+1409033 | MS.gene053022:CDS |
GATAACATTGCAAAAGAGAA+AGG | 0.505631 | 6.2:+1408388 | MS.gene053022:CDS |
AATATGCAACTCACCGTTCG+TGG | 0.508416 | 6.2:-1402012 | None:intergenic |
CAAAATCAGTATGAAGAAGA+AGG | 0.510960 | 6.2:+1409081 | MS.gene053022:CDS |
TTGTGAACTGGAAACCATAA+GGG | 0.517232 | 6.2:-1408984 | None:intergenic |
AGATTCTGAAAAGAAGTAGT+AGG | 0.518810 | 6.2:-1409187 | None:intergenic |
AGTATGAAGAAGAAGGATGA+AGG | 0.528222 | 6.2:+1409088 | MS.gene053022:CDS |
TGGTTGGAATTCTTGGTACA+TGG | 0.529564 | 6.2:+1403796 | MS.gene053022:CDS |
TTGTCATCATACTATTACAA+TGG | 0.530137 | 6.2:+1409127 | MS.gene053022:CDS |
TTGAATTGGCCAAAACCCTA+AGG | 0.530156 | 6.2:-1408939 | None:intergenic |
TAAAGATGATGTATCCAACT+TGG | 0.530838 | 6.2:+1408675 | MS.gene053022:CDS |
CTTCAAGGTTGGGAGCATAC+AGG | 0.533279 | 6.2:-1408472 | None:intergenic |
TAACATTAGCATTAACCTGA+TGG | 0.537085 | 6.2:-1409048 | None:intergenic |
AACATAGACAGAGAATGGAT+TGG | 0.540804 | 6.2:-1402577 | None:intergenic |
GATTGGGATTTGTGCTGAGA+AGG | 0.541720 | 6.2:-1402560 | None:intergenic |
TCCATAAAGTAGATATTCAT+GGG | 0.546951 | 6.2:-1409221 | None:intergenic |
AAAAGAAACAAGTGTGTTGG+AGG | 0.548990 | 6.2:+1406640 | MS.gene053022:CDS |
TTAGCATCAATATGCTTGCA+AGG | 0.558529 | 6.2:-1409019 | None:intergenic |
ATGCATACCAACATGTCTCA+AGG | 0.563493 | 6.2:+1408875 | MS.gene053022:CDS |
GAGAAAAGAAACAAGTGTGT+TGG | 0.566650 | 6.2:+1406637 | MS.gene053022:CDS |
CAATTGTTCAACTCCACGAA+TGG | 0.569077 | 6.2:+1409271 | MS.gene053022:CDS |
GGTATGCATGAGATTGAAGT+TGG | 0.570442 | 6.2:-1408861 | None:intergenic |
TGTTCATAGAAAATGGGTCG+TGG | 0.571043 | 6.2:+1408323 | MS.gene053022:intron |
TGAATTGGCCAAAACCCTAA+GGG | 0.580427 | 6.2:-1408938 | None:intergenic |
AGTAGCTGAAGATGCTTTGG+TGG | 0.580961 | 6.2:+1402341 | MS.gene053022:intron |
ACATTGCAAAAGAGAAAGGA+TGG | 0.582137 | 6.2:+1408392 | MS.gene053022:CDS |
TTGTAAGATTCATCCCAAGT+TGG | 0.584895 | 6.2:-1408689 | None:intergenic |
AACATTAGCATTAACCTGAT+GGG | 0.586384 | 6.2:-1409047 | None:intergenic |
AAAGATGATGTATCCAACTT+GGG | 0.588589 | 6.2:+1408676 | MS.gene053022:CDS |
GCTCCCAACCTTGAAGGCCA+AGG | 0.597883 | 6.2:+1408479 | MS.gene053022:CDS |
TTTACAAAGTGCGTAAAGAG+AGG | 0.599078 | 6.2:+1408651 | MS.gene053022:CDS |
TGCATACCAACATGTCTCAA+GGG | 0.610432 | 6.2:+1408876 | MS.gene053022:CDS |
AAGAGATCAAAAGTTCACCT+TGG | 0.612252 | 6.2:+1403776 | MS.gene053022:CDS |
TAGCATCAATATGCTTGCAA+GGG | 0.621207 | 6.2:-1409018 | None:intergenic |
TGGATGCATCTTAGGCGCGT+CGG | 0.636084 | 6.2:+1401962 | MS.gene053022:CDS |
TGGTTTAATAAAGAAAGCAA+AGG | 0.644031 | 6.2:+1408412 | MS.gene053022:CDS |
GAACTGGAAACCATAAGGGA+AGG | 0.661731 | 6.2:-1408980 | None:intergenic |
ACTATAGCTTATGCCACGAA+CGG | 0.674967 | 6.2:+1401999 | MS.gene053022:CDS |
GATATGTTGAACCTGAAACA+TGG | 0.676143 | 6.2:+1408501 | MS.gene053022:CDS |
AAACTTTCACAATCAAAACG+TGG | 0.688285 | 6.2:+1400387 | MS.gene053022:CDS |
ATGGCCTAAAGACAAAAGAG+AGG | 0.713382 | 6.2:+1408520 | MS.gene053022:CDS |
CAGAATAGCGAAAATTACGG+AGG | 0.722843 | 6.2:-1400449 | None:intergenic |
TGTACCAAGAATTCCAACCA+AGG | 0.746067 | 6.2:-1403793 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 1400167 | 1409303 | 1400167 | ID=MS.gene053022 |
chr6.2 | mRNA | 1400167 | 1409303 | 1400167 | ID=MS.gene053022.t1;Parent=MS.gene053022 |
chr6.2 | exon | 1400167 | 1400263 | 1400167 | ID=MS.gene053022.t1.exon1;Parent=MS.gene053022.t1 |
chr6.2 | CDS | 1400167 | 1400263 | 1400167 | ID=cds.MS.gene053022.t1;Parent=MS.gene053022.t1 |
chr6.2 | exon | 1400361 | 1400471 | 1400361 | ID=MS.gene053022.t1.exon2;Parent=MS.gene053022.t1 |
chr6.2 | CDS | 1400361 | 1400471 | 1400361 | ID=cds.MS.gene053022.t1;Parent=MS.gene053022.t1 |
chr6.2 | exon | 1401958 | 1402020 | 1401958 | ID=MS.gene053022.t1.exon3;Parent=MS.gene053022.t1 |
chr6.2 | CDS | 1401958 | 1402020 | 1401958 | ID=cds.MS.gene053022.t1;Parent=MS.gene053022.t1 |
chr6.2 | exon | 1402346 | 1402611 | 1402346 | ID=MS.gene053022.t1.exon4;Parent=MS.gene053022.t1 |
chr6.2 | CDS | 1402346 | 1402611 | 1402346 | ID=cds.MS.gene053022.t1;Parent=MS.gene053022.t1 |
chr6.2 | exon | 1402744 | 1402791 | 1402744 | ID=MS.gene053022.t1.exon5;Parent=MS.gene053022.t1 |
chr6.2 | CDS | 1402744 | 1402791 | 1402744 | ID=cds.MS.gene053022.t1;Parent=MS.gene053022.t1 |
chr6.2 | exon | 1403711 | 1403817 | 1403711 | ID=MS.gene053022.t1.exon6;Parent=MS.gene053022.t1 |
chr6.2 | CDS | 1403711 | 1403817 | 1403711 | ID=cds.MS.gene053022.t1;Parent=MS.gene053022.t1 |
chr6.2 | exon | 1406605 | 1406698 | 1406605 | ID=MS.gene053022.t1.exon7;Parent=MS.gene053022.t1 |
chr6.2 | CDS | 1406605 | 1406698 | 1406605 | ID=cds.MS.gene053022.t1;Parent=MS.gene053022.t1 |
chr6.2 | exon | 1408332 | 1409303 | 1408332 | ID=MS.gene053022.t1.exon8;Parent=MS.gene053022.t1 |
chr6.2 | CDS | 1408332 | 1409303 | 1408332 | ID=cds.MS.gene053022.t1;Parent=MS.gene053022.t1 |
Gene Sequence |
Protein sequence |