AlfalfaGEDB | MS.gene053113

M. sativa cultivar XinJiangDaYe / MS.gene053113

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053113.t1	KEH24711.1	96.5	542	19	0	1	542	67	608	3.30E-211	744.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053113.t1	Q9ZT96	48.0	50	26	0	472	521	441	490	1.7e-06	55.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053113.t1	A0A072U5S3	96.5	542	19	0	1	542	67	608	2.4e-211	744.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene053113.t1	TR	mTERF

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053113.t1	MTR_6g003960	96.125	542	21	0	1	542	67	608	0.0	1060
MS.gene053113.t1	MTR_4g084630	27.331	311	190	4	217	525	46	322	4.57e-35	134
MS.gene053113.t1	MTR_4g070060	28.972	321	224	4	204	521	266	585	1.79e-34	137
MS.gene053113.t1	MTR_2g034600	30.859	256	172	3	267	521	231	482	1.47e-31	128
MS.gene053113.t1	MTR_2g034600	30.859	256	172	3	267	521	296	547	1.59e-31	129
MS.gene053113.t1	MTR_2g034600	30.859	256	172	3	267	521	292	543	1.63e-31	128
MS.gene053113.t1	MTR_5g041630	28.992	238	162	4	283	518	57	289	4.99e-25	105
MS.gene053113.t1	MTR_1g115415	26.269	335	241	6	197	527	124	456	3.52e-24	106
MS.gene053113.t1	MTR_5g068860	23.698	384	241	7	142	521	147	482	6.96e-24	105
MS.gene053113.t1	MTR_5g068860	26.009	223	156	5	284	501	140	358	1.02e-13	73.9

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053113.t1	AT1G78930	50.958	522	247	5	12	531	70	584	0.0	526
MS.gene053113.t1	AT4G38160	29.503	322	188	7	217	534	46	332	1.54e-35	137
MS.gene053113.t1	AT4G38160	30.351	313	180	6	217	525	46	324	1.75e-35	136
MS.gene053113.t1	AT4G38160	30.351	313	180	6	217	525	46	324	1.75e-35	136
MS.gene053113.t1	AT4G38160	30.124	322	186	7	217	534	46	332	4.77e-35	135
MS.gene053113.t1	AT2G21710	27.389	314	224	4	211	521	280	592	6.32e-32	130
MS.gene053113.t1	AT4G14605	28.358	268	180	5	255	521	211	467	9.33e-31	125
MS.gene053113.t1	AT4G14605	28.358	268	180	5	255	521	211	467	9.33e-31	125
MS.gene053113.t1	AT2G03050	31.687	243	156	6	283	521	32	268	1.70e-28	115
MS.gene053113.t1	AT2G03050	31.687	243	156	6	283	521	33	269	2.01e-28	115

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Find 120 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACAACCTCAACTATT+GGG	0.416730	6.2:-10986	MS.gene053113:CDS
AAATACCTGTAGAAAGTCTT+CGG	0.386329	6.2:+10850	None:intergenic
AACTAGCAAGCTGAAGTTGA+TGG	0.435075	6.2:-10957	MS.gene053113:CDS
AAGCAGCATCTTGAGAAGCG+AGG	0.673782	6.2:+13305	None:intergenic
AAGCATTCAAGAGAACTATA+AGG	0.404306	6.2:-12176	MS.gene053113:CDS
AAGGTTCAAGCAAGGCGTGG+AGG	0.673259	6.2:-13337	MS.gene053113:CDS
AATACCTGTAGAAAGTCTTC+GGG	0.414049	6.2:+10851	None:intergenic
AATTTGGCGTACCTGGTTCA+AGG	0.477280	6.2:+13102	None:intergenic
ACAAATGGGCGTGTCGGCCG+AGG	0.502566	6.2:-13791	MS.gene053113:CDS
ACACTACAATCATACCTTCA+CGG	0.512801	6.2:+12132	None:intergenic

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	6748	13881	6748	ID=MS.gene053113
chr6.2	mRNA	6748	13881	6748	ID=MS.gene053113.t1;Parent=MS.gene053113
chr6.2	exon	13114	13881	13114	ID=MS.gene053113.t1.exon1;Parent=MS.gene053113.t1
chr6.2	CDS	13114	13881	13114	ID=cds.MS.gene053113.t1;Parent=MS.gene053113.t1
chr6.2	exon	12147	12260	12147	ID=MS.gene053113.t1.exon2;Parent=MS.gene053113.t1
chr6.2	CDS	12147	12260	12147	ID=cds.MS.gene053113.t1;Parent=MS.gene053113.t1
chr6.2	exon	10856	11038	10856	ID=MS.gene053113.t1.exon3;Parent=MS.gene053113.t1
chr6.2	CDS	10856	11038	10856	ID=cds.MS.gene053113.t1;Parent=MS.gene053113.t1
chr6.2	exon	7368	7585	7368	ID=MS.gene053113.t1.exon4;Parent=MS.gene053113.t1
chr6.2	CDS	7368	7585	7368	ID=cds.MS.gene053113.t1;Parent=MS.gene053113.t1
chr6.2	exon	6748	7092	6748	ID=MS.gene053113.t1.exon5;Parent=MS.gene053113.t1
chr6.2	CDS	6748	7092	6748	ID=cds.MS.gene053113.t1;Parent=MS.gene053113.t1

Gene Sequence

>MS.gene053113

ATGAGGGACACAGTAGTCTCTGATTGGGAACTGCAGGAAGGTCGAATCGCAGTTTCAACTTTTCTTCAACAAATGGGCGTGTCGGCCGAGGAATCCGAATCAATAGCATCAAACTCACCAGCATATCTCAACATGTTGGTAGAAAGTGTTAGGGATTTGGATCACTTCTCTTCTTCCATGCTGGATGCTAATGCTAATGATGTTGGTGTGTTCAACTTGAACTTCAACTACAGGGACAAGATTCTTCACATTGCAGCTCTCAAAGGTGACAACGGCAAACTAGCTTACTTAGAGAGTCTCGGCTTCACACTCTCTTCCTCAATGAATGTCGCCAGGTATATATCCTCCGCTGACACCCTCCCGTCTCTCATTAACAAAGTTACCTCTATCAAACAACTCCTTTTTCCTCCCGCTCACACTACTCATCACTATCAACTCCTTATCAAGAATATTCGCCTCATCATGACCCACTTATCAATTTCACTAGATGAAGATATGCAACACACTTTCTCCTTTTTCGAAAAGGTTCAAGCAAGGCGTGGAGGTTTAAATATCCTCGCTTCTCAAGATGCTGCTTTCCGTTGCTTCATTGAATCATTTCCTCGTATACTTTTGTTATCACTAAATAATCACATCTCATCTATACTGGATATTCTCCAAAATATTGGGATCCCCGCAGATTGCATCCCCAACATAATATTGGCTTTTCCTCCTATTTTGCTCTGGAATGTTGAACTCCTTCAAACTAGAGTTCTGGCCTTGAACCAGGTACGCCAAATTTTTCTTTCTTTCCGAACAAAGTGCATTGTGATGTTTATATGATTTCATTCTTCTTTGCCTGAAAACTGCATTTTTGGTGCTATGTTGTTTTCTCTCAACTATCGACGTTGAGAATAAAATAAGCGCATCGAAGATGATGATGTTGTGTTGGATGTGTGGTTAGACTAGATGACATAAGATTAGAAAGGACAACATTAGAGATAGAGTGAGAGAGAAAAGATGGTGGAAAGATGTTGGGGGTAGCACCTATAGTGAAAGATGGTGGAAAATAGACTTAGGTGGTTTGGGCATGTAGAGGAGAAACCTGGAGATTATGTAGTAACGAGAGTAGATCAGAGTTAGATCACTAGAGGCAGAGGAAGACCTAGAAAAACTATAAGAGAAACCATTAAGAAAGATCTAAAGATTAATGAGTTGGATTGAAATATGGTTTTTGATAGAACATTATGGCGTAATTTGATCCATGCAGCCGACCCCACTTAGTGGGATAAGACTTGGTTGTTGTTGTTGTTTCTGTTGGCTCTGCAATGTCTACAACAGAATAAATTAATAGTTTACAATAGTTTGTAACTAAAAAATAACAGAAACTAACTGAATTACTGTTTGTAGAAGTTTCCAGAAGTATTCAAAAGTAGAAGACTTAAAACTTTTATTGTAGAATTAAAACTAAGTTACAGAGTTGTGTGACATAATTTAGGCAGACAGATCACTCACAATCTGATTTCCCCATTCTCAGCGGCTATCATATCTTCTTTTTGCTCAGAATTAAATGCCAACATGATCTTAATTATAATATCACTTGCTACCTTTAACTAATAAGTTAATAATTGATTTTTTGTAGATTGACGGTGTGGATAAAGATTATGCCATGTTGATGCTAAAATATCCGTGGGTTCTATCTACAAGCATTCAAGAGAACTATAAGGAGGTCCTTGCCTTTTTATATTCCGTGAAGGTATGATTGTAGTGTCATGAGAGCTTGTGGCCATATAATTTTGCGTTTATGTGTATCTGTATTTAGGCAAGTTGATTGTTACTAAAAGAAAACTATGGAGACTACTTTAAATTGTTGTTCCAAAATAATTTGTTCCCTAGGAAATGTATTCTACAGTAAATTGAGCAGCCCTATGTACAAGATAACTTGAAATAGAACTAATGCATTATATTTAAGAAGTTTAATAATCTTGTTTACAGTTGTAAAGCATGGTCGTATGGCTGAAGTCAAATTGGTGTACATGCCAGGCAATCACTACCACCATAAGATATACCTATGTGTATGTTAAATGTAATGCTTGAAACTTCGTTGTAAATATTAAAATATTAATTGGGCACTTGTTCTTGAAATATAAGAAAGTTGTAGCAAGTTATTGGTGGTAAAATAATTTCAAGATTAAAGAAAAATGTTTTATTAGGCTAGATTTCAGGGCTGAGTTATGCCTTGCATAAATCCTAAGATGGCACCAATAACTATCCTATATTTGCATGTTAGGCCTCCCATAGATGACCTGTCCTGCAAACTTTGCGCTCTAGATGTCCAATTTTGGCGTAAGAGGGGTGTATTGAGATCCCATATTAAGTAGAGACATGGCTAAAGTAGTTCTTACTAGTCTTGAGTAGTCCTCACTCCTTGAGCTAGCTTATGAGGTTAAGTTAGGCCTATCCCAAATTATTCTACTATTTGGTTTTTTTTTCACAACAGCCCCCAAGCCTTACCAACTAGGTGAAACCGGCTACTTGGATCAAACGGCGCCATAATGTTCTATTGTGAATCATATCTGTGGCCAAACCATTGACTCAGAAGGCCCAAAAACACTAATCGGAGAAAATCAACACGGCTAAATCTGCACACTTCCTTATGATTATGGCTGATGGCTTGGTCCTTTTGCTGCCTTATTAAGAGTCCAATTTATTTCACGTGCATATGCATGTTGCTTTTGAAAAATAAAATGTTTTTGGTATATGTGGTGGTAGTGGGTAAGGTAGGTATGAAAGACATATTTCATTAGTTTGGTTAGAAGACTGAATTGCAGAAGCACAAGACTAATAATATTGTTTCATTCTAGGTTCCAAAGACATGGACAGACCGTGCAATCAAAAGACAACCTCAACTATTGGGTTGTTCAACTAGCAAGCTGAAGTTGATGGTAGATCAGTTTGCCGAACTAGGAGTTCAGAGGAAAAAGTTGTATCAGGTTATCACCAGAAGTCCTCAGCTATTATTACAGAAGCCCGAAGACTTTCTACAGGTATTTTTCTTTTGCTCTAATCAAGTGTATATGATATACGATAGAGATGTTTTACAAGTATTTATTACAATTTGAGCAGAGGAGAAAATGCAGGAAAGCAATAATATAAAGTAGAGAAAAATTTGGAGAGTTTGAAGAGAATATGTTTGAAACTGAATCAATTAATTTCAAAAGAATTAGTGAGTGACCTATTTATAGTGGTCTACTTCAGATCAATTAGATTTGAGCTACCTAACCGATGATGCCAGAATTTTGTCAATAACAATTTGACATGTGACTAATATGGCGTCTGAAAGGCACACTAGCCAAATAGCTTTCTACACACAATGACCAATATGAGACTACACCCTAACGATGTCCCCTCAAACTCAAGGTGGTTGAGCAAGCGCAAATTTGTCAAACACCTAAAGTTTGTCTGGAAGAGCAAATGAACCACCGTTTGCAGAGAGGCTTTGTGGGGAAATCAGCATTCTGATCAGTAGTAGGAATATGGTGAACTATGAAGTTCTGGCTTAGAACCTTCTCTAGCACAAAGATGTCAAGTTCCCGAGGAAGAGCACTGGACTGTGTGATAAGGAGAGACTGTACCCGAGTTGTCACAGAAAGTAATTTGGGTCTGGAAGGGAGTTTTCAGCTCAGTAAGCAAAGACTGCACCCACAGAATATTTGCACCACTATTGGCAAGGTTTAACCTGTCTCATTGTTTTTTGGACCTTCATGATAATAAACTGGGTCCAAGATAAATGCTCGACTCAGAAGTGCAGTCAGTCCCATCTGGGTCTGATCCCCTGCCAGAGTCATTGAAGACAATTATAGAAATGGGCTGTCGAGCAGGGGCAGGTTTCACAGGAGGCCATGACAGACCACCCCTTTTGGTTATCAAAGTTGTTGGAAATTCCGCCTTTATTGCGTCCACCCCTAGTCACCTAATTGCGGCATTTAAGTTGCCTTCATTGCAGTCTCCAACACCTTCATTTTGTTGGCTTTGAGGGGGTGGATTTAGTCCCACATCGGATAGATAAGACTCTTGATAAGAGCTTATAAAGACGAGGCACTCCTCAACTTACAAGACAGTTTTGTAAGGATGAGTTAGGCCCAATTCCCACTGTCAAACTGGTTTCTGGAATCGTGACATTCTGGACATTCTGGAGTGCTCCAATAATAGACCGATTTAGAGTAAGGGTCTGAAACATAATAGACCGATTTAGAGTAAGGGTCTGAAACATAGTTAGCTCAAACTTTTTCAGTTTGATGTTACCAACTATAAGGGTCTGAAACATAGTTAGCTCAAACTTTTTCAGTTTGATGTTACCAACTAATAACTATAGAGGTTGAGATCTCAATGGCATCTCCCGTTTATCCTTAGACAGAAGATCACACATATATTTGTATTAAGAGAGCTGAAAAGAACCATTCTTGAGATATTAGACTTCAATTCCTGGGAAATAATCAAAGGCTTCAAGATATTAGATCTCAAAGGTTTATAAAGACGAGGCACTCCTCACCTTACAAGCCGGTTTCGTAAGGATGAGTTAGGCCCAATTCCCACTGTCAAACTGGTTTCTGGAATCGTGATATACTGGAGTGCTCCAATAATAGACCGATAAAGAGTATGGGAAATAATCAAAGGCTTCAAGATGATCATAAGAGCAAACTGTGATTTTACTAGTATTGAGGAGAATTATTAAAAAGGCCCAATTCCCACTGTCAAACTGGTTTCTGGAATCGTGATATACTGGAGTGCTCCAATAATAGACCGATAAAGAGTATGGGAAATAATCAAAGGCTTCAAGATGATCATAAGAGCAGACTGTGATTTTACTAGTATTGAGGAGAAACTTGTCAAAAGAATATATGTTTAGTTACAATTTATAATTTGTTGTGTTTAGTTATTGAGCAACAAGAACATTTAACAGTATATTACAGTATCAGACTAGGCATACATCTCCGATGTTTCACAAGAAATCACATCTTTGTGGTTATACATACATGAGTTTAAATTAAATGATACTTTAAATTATGTCACAAGAATGCATTTATTGATTGACACTTGTAAAAAATTGTCTTGAAAGTGTTCTCTTGGTGTGTATATTATTAAGATTATTATGGTAAGACTAAGATCAAGATAAAATTAAAATAAGATTAAAATACATTTATTTTTTCCTGAGGATATTTATGTAATTTCATAAACCAAACAATGCCTAACTCTATTAATGGCAAAAATGCAAATAAGTGACAAAGATGATGTCTTTTAAAATGCAAATAAGTGACAAAGGTGATGTCTTTTAAATTAAATGATGTTTTAAGGTGATGTGACAACAATGCATTTGTTGATTGACACTTCTAAAAAAATTGTCTTGAAAGTATTCTCTGTGTATATTATTAAGAAGTCTAGAGATGAGCTGCTGAATGAGAGGAGTCACATGATATCATCAACATAACCCGGGGTCTGAGATTTGAAAATGGTACTTTGTGAAGCATATCAAAGCTAGAAATAATTACCAGTCATGATGCACAGATAATCCGAAATTATCTATTTCCCACCCTCAGCATAATCCCACTCTTGCAATCTTGTTTACCTCAAAACCATTACACAATAGCCAAAACGTTACAATTTAGGGAAATGCCCAAATGTTACTTCTGTTGGTCAGTTATGTCCAAAACATTAACCCTCCGTCAATTTGTGTATTAAACATTCATTTTGGTCCTCGAAAGAAAATGTAATTTTAGATCTTAGTCCTTCACCTTCTCTCACTCTTTTCTTTTCTCCTTCTTCCCCTTTGTCTCTTTCTTTACTATGATGGCACTATAGTTTATGCATCTCCTGCAAACCAACAGTGAAGCAATAGCTCTACAAATCATTTTGAAATTTCCAGTCACAGGACAAAAAACTTTATTAGAATTACATTGTAAGACAACCAATACTACAAGCATAAGCTAAAGATTAGTTAGAACCATTCCTGCTTTAGGTTTTGCATGATCGTCTCATGTTTAAAATGCTAATTGAGCTTGCCTTAAAATTTCAACAAACAAATGTATTATTAAACCAACAGTACTTAAGTTTCCTTCATGATGTAAACAATGCTTACCTAAAAAATTGCAGCACTAAAGAAAGTTGCTTGAAAAAAATATAAGTCTGGAATCGGTTGTTGTTAAAATTGTTTTATTTTTTTTATTTTTAAATAACTGCAAATGGGTTTCTGTTATATTTATCAGTGTTGCTTCATTTATTTGTTTACACAATAAGCTCTTGGTCATTGTTGTCTACAGGTTGTTATGTTCTTTGAAAATATGGGTTTTGATAAAGAAAATATTGGGAGAATACTTGCTCGCTGCCCTGAAATTTTTGCCACCAGCATTAGTAAAACTTTACAGAGCAAGATTGAGTTCCTTAGGAGAATTGGTGTTTCTAAAGCTTACATTCCTTTGGTTATCAGAAAGTATCCAGAACTACTTGTGTCTGACATTAACAAAACCTTACCTCAACGGTATTGTTATGATTCATCACATTTTTTTGTCTATTGTTCTTTAAGTATCATATTCTCTTTTGTCTGTTGTTCTTTAAGTATCATATTTCTTAACTCACCCAATCATTTTTGGGCAGTGAGTATTTACTATTCTAAAATAATGCAGTGATTTAGATTTTAGAAAAATGTCATGAAGTTTTTTTTTCTTCTCCAATAGTAATAGAATGATTCATGTGTCATTCTATTGACCAACCATCTAACTGATCATTTGATTTTGATATGTTGATGTTCTGCAGGATAGTGTACTTTATGAAGCTAGGACTTTCAGAGAAGGAAATTGCATTTATGGTACGTACATTTTCTCCTCTACTTGGGTACAGCATAAAGGAGGTTCTGATGCCAAAATTAGAATTTCTGGTGAACTCAATGAAGAGGCCGGTACGAGACGTGGTGAGCTACCCTAGGTATTTTAGCTATTCACTAGAAAAGAAGATAAAACCAAGATATCGGGTTCTGAAAGGAAGGAATATCGAATGTAGCTTAAAGGATATGCTGGCAAAAAGTGATGAAGAATTTGCTGCTGAATTTATGGGTGTTGGAAAGATGCTCGTCTGTCCTCCCTTGTCTTCACATGATAAGCT

Protein sequence

>MS.gene053113.t1

MRDTVVSDWELQEGRIAVSTFLQQMGVSAEESESIASNSPAYLNMLVESVRDLDHFSSSMLDANANDVGVFNLNFNYRDKILHIAALKGDNGKLAYLESLGFTLSSSMNVARYISSADTLPSLINKVTSIKQLLFPPAHTTHHYQLLIKNIRLIMTHLSISLDEDMQHTFSFFEKVQARRGGLNILASQDAAFRCFIESFPRILLLSLNNHISSILDILQNIGIPADCIPNIILAFPPILLWNVELLQTRVLALNQIDGVDKDYAMLMLKYPWVLSTSIQENYKEVLAFLYSVKVPKTWTDRAIKRQPQLLGCSTSKLKLMVDQFAELGVQRKKLYQVITRSPQLLLQKPEDFLQVVMFFENMGFDKENIGRILARCPEIFATSISKTLQSKIEFLRRIGVSKAYIPLVIRKYPELLVSDINKTLPQRIVYFMKLGLSEKEIAFMVRTFSPLLGYSIKEVLMPKLEFLVNSMKRPVRDVVSYPRYFSYSLEKKIKPRYRVLKGRNIECSLKDMLAKSDEEFAAEFMGVGKMLVCPPLSSHDK