Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053353.t1 | XP_013467072.1 | 96 | 151 | 6 | 0 | 1 | 151 | 1 | 151 | 1.10E-74 | 290.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053353.t1 | B7FKW7 | 96.0 | 151 | 6 | 0 | 1 | 151 | 1 | 151 | 2.6e-77 | 290.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053353.t1 | I3SSK7 | 96.0 | 151 | 6 | 0 | 1 | 151 | 1 | 151 | 7.7e-75 | 290.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene053353.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053353.t1 | MTR_1g041795 | 96.026 | 151 | 6 | 0 | 1 | 151 | 1 | 151 | 4.24e-107 | 310 |
MS.gene053353.t1 | MTR_1g041765 | 86.082 | 194 | 27 | 0 | 150 | 343 | 5 | 198 | 2.24e-101 | 297 |
MS.gene053353.t1 | MTR_5g015340 | 64.706 | 85 | 28 | 1 | 150 | 232 | 5 | 89 | 3.63e-29 | 114 |
MS.gene053353.t1 | MTR_5g015340 | 64.706 | 85 | 28 | 1 | 150 | 232 | 5 | 89 | 3.63e-29 | 114 |
MS.gene053353.t1 | MTR_5g015340 | 64.706 | 85 | 28 | 1 | 150 | 232 | 5 | 89 | 3.39e-28 | 113 |
MS.gene053353.t1 | MTR_4g097130 | 62.353 | 85 | 31 | 1 | 150 | 233 | 5 | 89 | 6.02e-28 | 111 |
MS.gene053353.t1 | MTR_4g097130 | 62.353 | 85 | 31 | 1 | 150 | 233 | 5 | 89 | 8.10e-28 | 110 |
MS.gene053353.t1 | MTR_4g097130 | 62.353 | 85 | 31 | 1 | 150 | 233 | 5 | 89 | 8.25e-28 | 110 |
MS.gene053353.t1 | MTR_0095s0040 | 54.444 | 90 | 37 | 2 | 150 | 235 | 5 | 94 | 2.31e-22 | 94.7 |
MS.gene053353.t1 | MTR_8g494240 | 54.444 | 90 | 37 | 2 | 150 | 235 | 5 | 94 | 6.48e-22 | 94.4 |
MS.gene053353.t1 | MTR_8g494240 | 54.444 | 90 | 37 | 2 | 150 | 235 | 5 | 94 | 7.07e-22 | 94.4 |
MS.gene053353.t1 | MTR_2g031870 | 67.188 | 64 | 20 | 1 | 150 | 212 | 5 | 68 | 2.25e-21 | 92.8 |
MS.gene053353.t1 | MTR_8g494240 | 54.444 | 90 | 37 | 2 | 150 | 235 | 5 | 94 | 2.61e-21 | 94.4 |
MS.gene053353.t1 | MTR_8g092810 | 71.698 | 53 | 15 | 0 | 150 | 202 | 5 | 57 | 1.08e-19 | 90.1 |
MS.gene053353.t1 | MTR_2g099610 | 64.815 | 54 | 19 | 0 | 148 | 201 | 3 | 56 | 3.89e-18 | 84.0 |
MS.gene053353.t1 | MTR_8g018410 | 64.000 | 50 | 18 | 0 | 152 | 201 | 7 | 56 | 6.15e-16 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053353.t1 | AT3G23490 | 72.393 | 163 | 45 | 0 | 2 | 164 | 3 | 165 | 9.15e-84 | 251 |
MS.gene053353.t1 | AT3G23490 | 72.393 | 163 | 45 | 0 | 2 | 164 | 3 | 165 | 9.15e-84 | 251 |
MS.gene053353.t1 | AT3G23490 | 70.492 | 122 | 36 | 0 | 2 | 123 | 3 | 124 | 3.96e-58 | 184 |
MS.gene053353.t1 | AT5G67580 | 60.494 | 81 | 30 | 1 | 150 | 228 | 5 | 85 | 1.14e-23 | 99.4 |
MS.gene053353.t1 | AT5G67580 | 60.494 | 81 | 30 | 1 | 150 | 228 | 5 | 85 | 1.14e-23 | 99.4 |
MS.gene053353.t1 | AT3G49850 | 52.326 | 86 | 41 | 0 | 152 | 237 | 7 | 92 | 3.04e-22 | 95.5 |
MS.gene053353.t1 | AT3G49850 | 52.326 | 86 | 41 | 0 | 152 | 237 | 7 | 92 | 3.04e-22 | 95.5 |
MS.gene053353.t1 | AT1G49950 | 63.077 | 65 | 23 | 1 | 150 | 213 | 5 | 69 | 3.64e-20 | 89.7 |
MS.gene053353.t1 | AT1G49950 | 63.077 | 65 | 23 | 1 | 150 | 213 | 5 | 69 | 3.64e-20 | 89.7 |
MS.gene053353.t1 | AT1G49950 | 63.077 | 65 | 23 | 1 | 150 | 213 | 5 | 69 | 3.64e-20 | 89.7 |
MS.gene053353.t1 | AT1G72740 | 60.714 | 56 | 22 | 0 | 148 | 203 | 3 | 58 | 2.39e-17 | 81.3 |
MS.gene053353.t1 | AT1G72740 | 60.714 | 56 | 22 | 0 | 148 | 203 | 3 | 58 | 2.42e-17 | 81.6 |
MS.gene053353.t1 | AT1G17520 | 58.333 | 60 | 25 | 0 | 152 | 211 | 7 | 66 | 3.85e-17 | 81.3 |
MS.gene053353.t1 | AT1G17520 | 58.333 | 60 | 25 | 0 | 152 | 211 | 7 | 66 | 3.89e-17 | 80.9 |
MS.gene053353.t1 | AT1G17520 | 58.333 | 60 | 25 | 0 | 152 | 211 | 7 | 66 | 3.94e-17 | 80.9 |
MS.gene053353.t1 | AT1G17520 | 58.333 | 60 | 25 | 0 | 152 | 211 | 7 | 66 | 3.97e-17 | 80.9 |
Find 69 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGAAGCTGTTATGCATTT+TGG | 0.126356 | 1.4:-26407287 | MS.gene053353:CDS |
GGCAGTGCTGCCTTTAATTT+AGG | 0.143152 | 1.4:+26408978 | None:intergenic |
CGCAAACTAGTGTTGAATTC+TGG | 0.175108 | 1.4:+26401700 | None:intergenic |
TTTAATTTAGGGGCAGTTTC+AGG | 0.226837 | 1.4:+26408990 | None:intergenic |
TCATTTCTCCCAGTTGCTTT+TGG | 0.271270 | 1.4:+26401469 | None:intergenic |
TGAAACTGCCCCTAAATTAA+AGG | 0.278815 | 1.4:-26408988 | MS.gene053353:CDS |
CATTTCATGGATAAGTTCTT+CGG | 0.312623 | 1.4:+26408947 | None:intergenic |
TTCAAGACCCCACTGTTTAC+AGG | 0.318211 | 1.4:-26408887 | MS.gene053353:intron |
GCAGTGCTGCCTTTAATTTA+GGG | 0.342369 | 1.4:+26408979 | None:intergenic |
GTGGGGTCTTGAATGATATT+AGG | 0.354594 | 1.4:+26408897 | None:intergenic |
ATAAGTTCTTCGGGCAGTTC+GGG | 0.367865 | 1.4:+26408957 | None:intergenic |
AATGATTCTCCAAAAGCAAC+TGG | 0.374694 | 1.4:-26401478 | MS.gene053353:CDS |
AAATGATGAAACCTCCTCTT+AGG | 0.374748 | 1.4:-26408929 | MS.gene053353:CDS |
GAAATAATCAACGAGGAGTT+TGG | 0.376703 | 1.4:-26407251 | MS.gene053353:CDS |
GGCTGAGGAAGCAACTTATA+AGG | 0.388838 | 1.4:-26401314 | MS.gene053353:CDS |
GAGGAGGTTTCATCATTTCA+TGG | 0.405080 | 1.4:+26408934 | None:intergenic |
GCAAACTAGTGTTGAATTCT+GGG | 0.405933 | 1.4:+26401701 | None:intergenic |
GATAAGTTCTTCGGGCAGTT+CGG | 0.410666 | 1.4:+26408956 | None:intergenic |
TAAGGGTCTCACACCTCAAC+AGG | 0.416868 | 1.4:-26401389 | MS.gene053353:CDS |
CAGAGCTGCCTCTTCTTCTC+CGG | 0.417460 | 1.4:+26401777 | None:intergenic |
GAATATCAATATTCGATCAT+AGG | 0.430998 | 1.4:-26401540 | MS.gene053353:CDS |
AGTCAGTTAGCAGAGGAAAC+AGG | 0.436835 | 1.4:-26409065 | MS.gene053353:CDS |
TGCTCAGTTGACAAAGTTCA+AGG | 0.451647 | 1.4:-26404954 | MS.gene053353:CDS |
ATGTAGACCTCAAGGACAAA+TGG | 0.452440 | 1.4:-26401666 | MS.gene053353:CDS |
TTCCTCTGCTAACTGACTAT+AGG | 0.483618 | 1.4:+26409070 | None:intergenic |
GAAGAGGCAGCTCTGAAAGC+GGG | 0.486977 | 1.4:-26401769 | MS.gene053353:CDS |
GGCAGAAGCTGCCATGACTA+AGG | 0.496803 | 1.4:-26401335 | MS.gene053353:CDS |
GGAGTAGTCAAACACGGAGC+TGG | 0.501232 | 1.4:-26401748 | MS.gene053353:CDS |
AGTTCCTCCATTTGTCCTTG+AGG | 0.505844 | 1.4:+26401659 | None:intergenic |
ATTTCATGGATAAGTTCTTC+GGG | 0.511143 | 1.4:+26408948 | None:intergenic |
TCAAACACGGAGCTGGAAGA+TGG | 0.524401 | 1.4:-26401741 | MS.gene053353:CDS |
CGACGACAACATTTAGATCA+AGG | 0.524618 | 1.4:-26401630 | MS.gene053353:CDS |
GACAAAGTTCAAGGAGTCGA+TGG | 0.531253 | 1.4:-26404945 | MS.gene053353:CDS |
CAGTGCTGCCTTTAATTTAG+GGG | 0.544032 | 1.4:+26408980 | None:intergenic |
CGTGTGGTACTGACATTGGA+TGG | 0.547014 | 1.4:-26404915 | MS.gene053353:CDS |
AATAATAATCAATATTCAAG+TGG | 0.553519 | 1.4:-26401562 | MS.gene053353:CDS |
ATATTTACCACATTCAGAGC+AGG | 0.557285 | 1.4:-26404889 | MS.gene053353:intron |
AAAATGGACCGGAGAAGAAG+AGG | 0.564638 | 1.4:-26401785 | MS.gene053353:CDS |
ATCAACGAGGAGTTTGGTGA+TGG | 0.568363 | 1.4:-26407245 | MS.gene053353:CDS |
AGCTGCAAAAGCAATGGAGG+AGG | 0.570145 | 1.4:-26401356 | MS.gene053353:CDS |
GAGCTTTGAAGAACAAGAGT+GGG | 0.572920 | 1.4:-26409097 | MS.gene053353:CDS |
AGCTGCCATGACTAAGGCTG+AGG | 0.573794 | 1.4:-26401329 | MS.gene053353:CDS |
GTGGATGACCTGTAAACAGT+GGG | 0.581279 | 1.4:+26408879 | None:intergenic |
GGAAGCAACTTATAAGGCAG+AGG | 0.583297 | 1.4:-26401308 | MS.gene053353:CDS |
TGCTTCCTCAGCCTTAGTCA+TGG | 0.584066 | 1.4:+26401324 | None:intergenic |
AGAAGAAGCTGCAAAAGCAA+TGG | 0.585302 | 1.4:-26401362 | MS.gene053353:CDS |
TGCAAAAGCAGAAATGAAGA+AGG | 0.586897 | 1.4:-26401251 | MS.gene053353:CDS |
CGAGCTTTGAAGAACAAGAG+TGG | 0.589767 | 1.4:-26409098 | MS.gene053353:CDS |
GCTTCTTCTATCGCCTGTTG+AGG | 0.590627 | 1.4:+26401376 | None:intergenic |
TTAGGATCATAAGACCTAAG+AGG | 0.595932 | 1.4:+26408915 | None:intergenic |
AGTTCAAGGAGTCGATGGGA+AGG | 0.601219 | 1.4:-26404940 | MS.gene053353:CDS |
AGAAGCTGCAAAAGCAATGG+AGG | 0.603836 | 1.4:-26401359 | MS.gene053353:CDS |
GTCCTATAGTCAGTTAGCAG+AGG | 0.605057 | 1.4:-26409072 | MS.gene053353:CDS |
TCGTTCAAATGTAGACCTCA+AGG | 0.605301 | 1.4:-26401674 | MS.gene053353:CDS |
GGATCGTGTGGTACTGACAT+TGG | 0.606251 | 1.4:-26404919 | MS.gene053353:CDS |
ACAAAGTTCAAGGAGTCGAT+GGG | 0.612696 | 1.4:-26404944 | MS.gene053353:CDS |
AGAAGAGGCAGCTCTGAAAG+CGG | 0.618500 | 1.4:-26401770 | MS.gene053353:CDS |
ATGATTCTCCAAAAGCAACT+GGG | 0.625879 | 1.4:-26401477 | MS.gene053353:CDS |
CAACTGACCTGCTCTGAATG+TGG | 0.638578 | 1.4:+26404882 | None:intergenic |
ATGTTGCTCAGCTTCTGAGA+AGG | 0.638976 | 1.4:-26409028 | MS.gene053353:CDS |
GGATCATAAGACCTAAGAGG+AGG | 0.643867 | 1.4:+26408918 | None:intergenic |
TAGACCTCAAGGACAAATGG+AGG | 0.657376 | 1.4:-26401663 | MS.gene053353:CDS |
GTGTGGTACTGACATTGGAT+GGG | 0.664313 | 1.4:-26404914 | MS.gene053353:CDS |
AGTGGATGACCTGTAAACAG+TGG | 0.680093 | 1.4:+26408878 | None:intergenic |
AGTCGATGGGAAGGATCGTG+TGG | 0.680487 | 1.4:-26404931 | MS.gene053353:CDS |
AAGCTGAGCAACATACACGT+TGG | 0.700899 | 1.4:+26409037 | None:intergenic |
CATCAAAGAAATAATCAACG+AGG | 0.720980 | 1.4:-26407258 | MS.gene053353:CDS |
AAAGCGGGAGTAGTCAAACA+CGG | 0.721145 | 1.4:-26401754 | MS.gene053353:CDS |
TGGATGACCTGTAAACAGTG+GGG | 0.771941 | 1.4:+26408880 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 26401228 | 26409156 | 26401228 | ID=MS.gene053353 |
chr1.4 | mRNA | 26401228 | 26409156 | 26401228 | ID=MS.gene053353.t1;Parent=MS.gene053353 |
chr1.4 | exon | 26408888 | 26409156 | 26408888 | ID=MS.gene053353.t1.exon1;Parent=MS.gene053353.t1 |
chr1.4 | CDS | 26408888 | 26409156 | 26408888 | ID=cds.MS.gene053353.t1;Parent=MS.gene053353.t1 |
chr1.4 | exon | 26407242 | 26407313 | 26407242 | ID=MS.gene053353.t1.exon2;Parent=MS.gene053353.t1 |
chr1.4 | CDS | 26407242 | 26407313 | 26407242 | ID=cds.MS.gene053353.t1;Parent=MS.gene053353.t1 |
chr1.4 | exon | 26404890 | 26404998 | 26404890 | ID=MS.gene053353.t1.exon3;Parent=MS.gene053353.t1 |
chr1.4 | CDS | 26404890 | 26404998 | 26404890 | ID=cds.MS.gene053353.t1;Parent=MS.gene053353.t1 |
chr1.4 | exon | 26401228 | 26401809 | 26401228 | ID=MS.gene053353.t1.exon4;Parent=MS.gene053353.t1 |
chr1.4 | CDS | 26401228 | 26401809 | 26401228 | ID=cds.MS.gene053353.t1;Parent=MS.gene053353.t1 |
Gene Sequence |
Protein sequence |