AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053372

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053372.t1 MTR_4g119990 65.337 326 106 3 1 323 1 322 3.57e-150 427
MS.gene053372.t1 MTR_6g043890 61.639 305 104 3 1 302 1 295 1.19e-126 366
MS.gene053372.t1 MTR_1g035440 62.551 243 68 2 1 220 1 243 6.17e-82 249
MS.gene053372.t1 MTR_5g044670 29.755 326 189 12 1 311 1 301 1.19e-35 132
MS.gene053372.t1 MTR_7g050560 31.875 320 160 12 10 312 11 289 3.61e-33 124
MS.gene053372.t1 MTR_1g035460 30.065 306 190 8 28 321 2 295 4.71e-33 126
MS.gene053372.t1 MTR_3g098790 32.051 312 179 12 10 312 11 298 2.29e-32 123
MS.gene053372.t1 MTR_6g061070 28.916 332 205 12 9 323 15 332 7.21e-32 124
MS.gene053372.t1 MTR_7g050720 29.141 326 189 9 10 312 8 314 1.05e-29 115
MS.gene053372.t1 MTR_3g061320 28.990 307 177 10 10 312 10 279 1.83e-29 114
MS.gene053372.t1 MTR_7g050580 28.267 329 179 10 1 312 1 289 9.80e-29 113
MS.gene053372.t1 MTR_3g061350 28.247 308 183 11 10 312 10 284 2.66e-28 111
MS.gene053372.t1 MTR_3g061340 29.260 311 162 12 12 312 12 274 3.45e-28 110
MS.gene053372.t1 MTR_1g035640 28.525 305 178 10 12 311 9 278 6.17e-28 113
MS.gene053372.t1 MTR_8g103940 26.875 320 209 10 10 321 37 339 2.87e-27 111
MS.gene053372.t1 MTR_1g108780 27.243 301 191 10 27 317 12 294 7.80e-27 110
MS.gene053372.t1 MTR_3g061310 27.987 318 190 10 1 312 1 285 1.36e-26 106
MS.gene053372.t1 MTR_1g035570 28.571 329 182 11 4 319 5 293 1.98e-26 108
MS.gene053372.t1 MTR_3g061370 26.452 310 190 10 8 312 5 281 6.31e-26 104
MS.gene053372.t1 MTR_7g050710 27.393 303 186 8 10 298 11 293 2.30e-25 103
MS.gene053372.t1 MTR_3g061290 38.562 153 85 5 10 158 10 157 4.25e-25 100
MS.gene053372.t1 MTR_7g050590 26.263 297 188 9 28 312 2 279 1.37e-23 98.6
MS.gene053372.t1 MTR_1g033740 37.423 163 89 7 9 166 19 173 3.42e-23 95.1
MS.gene053372.t1 MTR_1g035480 34.118 170 89 6 9 168 14 170 3.16e-22 92.4
MS.gene053372.t1 MTR_1g035620 27.044 318 184 10 1 311 1 277 3.58e-22 96.7
MS.gene053372.t1 MTR_4g068320 25.575 391 202 11 12 317 6 392 7.24e-22 95.9
MS.gene053372.t1 MTR_1g035500 31.737 167 96 6 8 166 21 177 2.49e-20 87.4
MS.gene053372.t1 MTR_1g050845 26.667 315 177 9 1 311 1 265 2.52e-20 92.0
MS.gene053372.t1 MTR_5g070440 26.710 307 161 10 11 312 20 267 5.80e-20 88.2
MS.gene053372.t1 MTR_1g035510 28.390 236 133 9 28 253 2 211 1.39e-19 86.3
MS.gene053372.t1 MTR_3g061330 26.872 227 138 5 10 235 10 209 2.19e-19 86.3
MS.gene053372.t1 MTR_1g035470 36.364 121 66 4 28 141 2 118 6.83e-18 79.3
MS.gene053372.t1 MTR_3g005490 24.918 305 160 9 11 312 20 258 1.11e-17 81.6
MS.gene053372.t1 MTR_1g035520 25.545 321 204 11 12 311 76 382 1.32e-17 83.2
MS.gene053372.t1 MTR_3g061220 35.156 128 67 2 1 128 1 112 2.08e-17 77.4
MS.gene053372.t1 MTR_1g035650 39.423 104 60 2 8 111 5 105 2.56e-17 79.3
MS.gene053372.t1 MTR_3g005480 34.234 111 72 1 11 121 20 129 8.16e-17 79.3
MS.gene053372.t1 MTR_3g005460 24.691 324 178 11 1 314 251 518 1.78e-16 80.5
MS.gene053372.t1 MTR_3g005460 31.034 145 94 3 11 153 24 164 1.30e-12 68.6
MS.gene053372.t1 MTR_1g021380 25.962 312 195 11 10 298 20 318 3.66e-16 78.6
MS.gene053372.t1 MTR_1g021435 24.085 328 205 10 10 298 20 342 1.09e-15 77.4
MS.gene053372.t1 MTR_3g005420 26.032 315 173 10 1 312 278 535 1.51e-15 77.4
MS.gene053372.t1 MTR_1g021400 23.547 344 175 12 10 298 28 338 2.01e-14 73.6
MS.gene053372.t1 MTR_7g050640 37.255 102 63 1 11 112 12 112 2.16e-14 68.9
MS.gene053372.t1 MTR_3g005495 31.646 158 99 3 11 160 242 398 3.19e-14 73.6
MS.gene053372.t1 MTR_1g021360 26.797 306 167 12 23 305 193 464 3.24e-14 73.6
MS.gene053372.t1 MTR_1g021410 24.706 340 210 12 13 319 23 349 1.15e-12 68.2
MS.gene053372.t1 MTR_1g034240 32.353 102 68 1 12 113 7 107 4.43e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053372.t1 AT3G18990 25.581 344 203 13 12 314 6 337 1.89e-23 99.4
MS.gene053372.t1 AT3G18990 25.581 344 203 13 12 314 6 337 3.35e-23 99.0
MS.gene053372.t1 AT1G49475 37.903 124 74 3 5 127 26 147 3.24e-16 76.3
MS.gene053372.t1 AT3G18960 32.143 112 74 2 2 112 19 129 1.23e-15 75.1
MS.gene053372.t1 AT3G18960 32.143 112 74 2 2 112 19 129 1.27e-15 74.7
MS.gene053372.t1 AT4G01580 31.250 112 75 2 2 112 19 129 3.08e-15 73.6
MS.gene053372.t1 AT4G33280 26.426 333 186 13 10 316 23 322 3.09e-13 70.1

Find 39 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAAACAATTCAGAATAAA+TGG 0.142583 1.4:-26941707 MS.gene053372:CDS
TTGATGACAAAGATAGAAAA+TGG 0.181722 1.4:-26941754 MS.gene053372:CDS
CATGCGAAGCAATCTTTATC+AGG 0.243715 1.4:+26942912 None:intergenic
GCTGACCATAATGTTAAATT+TGG 0.262407 1.4:-26941665 MS.gene053372:CDS
TGCCTCGTAGCAAAATTATT+TGG 0.278239 1.4:+26941812 None:intergenic
CTACTGAAAAGAAAGTTTAT+TGG 0.286292 1.4:-26943497 MS.gene053372:CDS
TCTGAGTGATTCACAACTTT+TGG 0.293072 1.4:-26943409 MS.gene053372:CDS
GAAGACGGTGATGAAGATTT+TGG 0.298750 1.4:+26943219 None:intergenic
TTATCTCTAATCCACATTTA+CGG 0.314447 1.4:+26943343 None:intergenic
TTAGGAAGTCGTAGAGTAAC+TGG 0.331524 1.4:+26943522 None:intergenic
TACTGAAAAGAAAGTTTATT+GGG 0.332878 1.4:-26943496 MS.gene053372:CDS
CATCACCAAATTTAACATTA+TGG 0.341952 1.4:+26941660 None:intergenic
AAACTAGTGATTATGATGTT+TGG 0.387209 1.4:-26943470 MS.gene053372:CDS
TACCCTTCAAGAAGGAAAAC+TGG 0.397147 1.4:-26943791 MS.gene053372:intron
TGTCTTCTCACAAAACTTGC+GGG 0.410110 1.4:+26943564 None:intergenic
CTAAACAATTCAGAATAAAT+GGG 0.412198 1.4:-26941706 MS.gene053372:CDS
TTTATTCTGAATTGTTTAGT+TGG 0.418278 1.4:+26941710 None:intergenic
TCTTCACTAATTTCTCTTGA+AGG 0.423792 1.4:+26943315 None:intergenic
TGATGACAAAGATAGAAAAT+GGG 0.439585 1.4:-26941753 MS.gene053372:CDS
ATACATGGAAAATGATCTCT+TGG 0.468132 1.4:-26942874 MS.gene053372:intron
TATGAAATGTTGCATGTGCT+TGG 0.471551 1.4:+26943127 None:intergenic
CTTCACTAATTTCTCTTGAA+GGG 0.483268 1.4:+26943316 None:intergenic
TATGATGCAAAAGGCATACA+TGG 0.492834 1.4:-26942889 MS.gene053372:CDS
CTTCGCATGTATGATGCAAA+AGG 0.497440 1.4:-26942898 MS.gene053372:CDS
CTTGAAAGTACCCTTCAAGA+AGG 0.526405 1.4:-26943799 MS.gene053372:CDS
TCTTCTCATGAACCTGATCA+TGG 0.532265 1.4:-26943844 MS.gene053372:CDS
ATGTCTTCTCACAAAACTTG+CGG 0.538262 1.4:+26943563 None:intergenic
TAGTTCTCTTATAGTTGTTG+AGG 0.538518 1.4:-26943268 MS.gene053372:CDS
TTGCTACGAGGCATCTGCAA+AGG 0.565526 1.4:-26941802 MS.gene053372:CDS
AGGCATCTGCAAAGGATGGA+AGG 0.586157 1.4:-26941794 MS.gene053372:CDS
TAAACAATTCAGAATAAATG+GGG 0.597019 1.4:-26941705 MS.gene053372:CDS
ATTTAACATTATGGTCAGCA+CGG 0.603137 1.4:+26941669 None:intergenic
ATGCGAAGCAATCTTTATCA+GGG 0.607508 1.4:+26942913 None:intergenic
TTTGTGAGAAGACATTGGCA+AGG 0.610981 1.4:-26943555 MS.gene053372:CDS
TACGAGGCATCTGCAAAGGA+TGG 0.619258 1.4:-26941798 MS.gene053372:CDS
TAGGAAGTCGTAGAGTAACT+GGG 0.629187 1.4:+26943523 None:intergenic
GTGATTGTACTCCGTAAATG+TGG 0.632873 1.4:-26943354 MS.gene053372:CDS
GAGGATCCTTCATCTTCGCG+AGG 0.649374 1.4:-26943249 MS.gene053372:CDS
AAACAATTCAGAATAAATGG+GGG 0.702685 1.4:-26941704 MS.gene053372:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAAATATTCACTA+CGG - chr1.4:26943226-26943245 MS.gene053372:CDS 10.0%
!!! AATTTTAATCTTATTTATGT+TGG - chr1.4:26943143-26943162 MS.gene053372:CDS 10.0%
!! AAAGAAATATTATTACAAAG+TGG + chr1.4:26942653-26942672 None:intergenic 15.0%
!! TAAAAAAAAATATTCACTAC+GGG - chr1.4:26943227-26943246 MS.gene053372:CDS 15.0%
!! TAATTTATGGTATAATTCAA+TGG + chr1.4:26942627-26942646 None:intergenic 15.0%
!!! GCTAATTAATACTTTTTTTT+TGG - chr1.4:26942393-26942412 MS.gene053372:intron 15.0%
!!! TAACATATACTACTTTTTTT+TGG - chr1.4:26942561-26942580 MS.gene053372:intron 15.0%
!! AAAATTAAGTGATATGTGTT+GGG + chr1.4:26943129-26943148 None:intergenic 20.0%
!! ACCAAAATAAAATGACTAAA+TGG + chr1.4:26943521-26943540 None:intergenic 20.0%
!! ACTAAACAATTCAGAATAAA+TGG - chr1.4:26943705-26943724 MS.gene053372:intron 20.0%
!! CTAAACAATTCAGAATAAAT+GGG - chr1.4:26943706-26943725 MS.gene053372:intron 20.0%
!! TAAAATTAAGTGATATGTGT+TGG + chr1.4:26943130-26943149 None:intergenic 20.0%
!! TAAACAATTCAGAATAAATG+GGG - chr1.4:26943707-26943726 MS.gene053372:intron 20.0%
!! TACTGAAAAGAAAGTTTATT+GGG - chr1.4:26941916-26941935 MS.gene053372:intron 20.0%
!! TTATGGTATGAAAAATCAAA+TGG + chr1.4:26943063-26943082 None:intergenic 20.0%
!! TTTATTCTGAATTGTTTAGT+TGG + chr1.4:26943705-26943724 None:intergenic 20.0%
!!! AATTTTAAGGATATTCACAA+AGG - chr1.4:26942307-26942326 MS.gene053372:intron 20.0%
!!! CTGTATCTATGTTTTAAAAT+CGG + chr1.4:26942805-26942824 None:intergenic 20.0%
!!! TAGTCATTTTATTTTGGTTT+TGG - chr1.4:26943523-26943542 MS.gene053372:CDS 20.0%
!!! TCCATTTAGTCATTTTATTT+TGG - chr1.4:26943517-26943536 MS.gene053372:CDS 20.0%
!!! TGCAACATTTCATAATTTTA+AGG - chr1.4:26942294-26942313 MS.gene053372:intron 20.0%
!!! TTCTTATAAACTTTTGAAGA+CGG + chr1.4:26942211-26942230 None:intergenic 20.0%
!!! TTTTTTTGGTGAAAATATTC+AGG - chr1.4:26942407-26942426 MS.gene053372:intron 20.0%
! AAACAATTCAGAATAAATGG+GGG - chr1.4:26943708-26943727 MS.gene053372:intron 25.0%
! AAACTAGTGATTATGATGTT+TGG - chr1.4:26941942-26941961 MS.gene053372:intron 25.0%
! AACATGTATGACTTAAGTTA+TGG + chr1.4:26943080-26943099 None:intergenic 25.0%
! ACTATGAAATTACTTCTCTA+TGG - chr1.4:26943183-26943202 MS.gene053372:CDS 25.0%
! CAAGAATAATCTTGAAAAAG+TGG + chr1.4:26941597-26941616 None:intergenic 25.0%
! CATCACCAAATTTAACATTA+TGG + chr1.4:26943755-26943774 None:intergenic 25.0%
! CTACTGAAAAGAAAGTTTAT+TGG - chr1.4:26941915-26941934 MS.gene053372:intron 25.0%
! CTATGAAATTACTTCTCTAT+GGG - chr1.4:26943184-26943203 MS.gene053372:CDS 25.0%
! CTTTCAATCATATGAATGAA+TGG + chr1.4:26943485-26943504 None:intergenic 25.0%
! GAGAATTGAGGATAAAAATA+GGG - chr1.4:26943348-26943367 MS.gene053372:CDS 25.0%
! TAATCGTTCATAGTTTATGT+CGG - chr1.4:26941754-26941773 MS.gene053372:CDS 25.0%
! TACAAAGTGGCATTAATTTA+TGG + chr1.4:26942640-26942659 None:intergenic 25.0%
! TGAGAATTGAGGATAAAAAT+AGG - chr1.4:26943347-26943366 MS.gene053372:CDS 25.0%
! TGATGACAAAGATAGAAAAT+GGG - chr1.4:26943659-26943678 MS.gene053372:intron 25.0%
! TTATCTCTAATCCACATTTA+CGG + chr1.4:26942072-26942091 None:intergenic 25.0%
!! ACTTTCTTTTCAGTAGTATT+AGG + chr1.4:26941911-26941930 None:intergenic 25.0%
!! TACTATTTTCTCCATAGAAA+AGG - chr1.4:26943824-26943843 MS.gene053372:CDS 25.0%
!! TAGATTCTTTATGCTCTTTT+AGG + chr1.4:26942246-26942265 None:intergenic 25.0%
!! TCTAAATTTTCTCTTATTCC+TGG - chr1.4:26942366-26942385 MS.gene053372:intron 25.0%
!! TTGATGACAAAGATAGAAAA+TGG - chr1.4:26943658-26943677 MS.gene053372:intron 25.0%
!!! CGATTTTAAAACATAGATAC+AGG - chr1.4:26942803-26942822 MS.gene053372:intron 25.0%
!!! CTACTTTTTTTTGGTGAATA+TGG - chr1.4:26942570-26942589 MS.gene053372:intron 25.0%
AAAAATATTCACTACGGGTA+TGG - chr1.4:26943232-26943251 MS.gene053372:CDS 30.0%
AAAATATTCACTACGGGTAT+GGG - chr1.4:26943233-26943252 MS.gene053372:CDS 30.0%
AAGTATTAATTAGCAACACC+AGG + chr1.4:26942387-26942406 None:intergenic 30.0%
AGGTACCTATATCCTATTAT+TGG + chr1.4:26942830-26942849 None:intergenic 30.0%
ATACATGGAAAATGATCTCT+TGG - chr1.4:26942538-26942557 MS.gene053372:intron 30.0%
ATAGATACAGGACCAATAAT+AGG - chr1.4:26942815-26942834 MS.gene053372:intron 30.0%
ATCAAATGGTGTATATTTGC+AGG + chr1.4:26943049-26943068 None:intergenic 30.0%
ATTGAGGATAAAAATAGGGA+AGG - chr1.4:26943352-26943371 MS.gene053372:CDS 30.0%
ATTTAACATTATGGTCAGCA+CGG + chr1.4:26943746-26943765 None:intergenic 30.0%
CTTCACTAATTTCTCTTGAA+GGG + chr1.4:26942099-26942118 None:intergenic 30.0%
GAAAACACATAATCCAAAAC+AGG - chr1.4:26943572-26943591 MS.gene053372:CDS 30.0%
GAGAAGTAATTTCATAGTCA+AGG + chr1.4:26943181-26943200 None:intergenic 30.0%
GAGTAAGTATATGAGAATTG+AGG - chr1.4:26943336-26943355 MS.gene053372:CDS 30.0%
GCTGACCATAATGTTAAATT+TGG - chr1.4:26943747-26943766 MS.gene053372:intron 30.0%
TAGTTCTCTTATAGTTGTTG+AGG - chr1.4:26942144-26942163 MS.gene053372:intron 30.0%
TCAAATGGTGTATATTTGCA+GGG + chr1.4:26943048-26943067 None:intergenic 30.0%
TCTTCACTAATTTCTCTTGA+AGG + chr1.4:26942100-26942119 None:intergenic 30.0%
TTAAGGATATTCACAAAGGT+TGG - chr1.4:26942311-26942330 MS.gene053372:intron 30.0%
! AATGATCATGTCCTTTTCTA+TGG + chr1.4:26943838-26943857 None:intergenic 30.0%
! TACCAAATAATTTTGCTACG+AGG - chr1.4:26943598-26943617 MS.gene053372:intron 30.0%
! TGTGCATTGATATCTACATT+AGG - chr1.4:26942680-26942699 MS.gene053372:intron 30.0%
! TTATTTGGTATGACCTGTTT+TGG + chr1.4:26943588-26943607 None:intergenic 30.0%
!!! TATGATGTTTGGTTTTGCAA+TGG - chr1.4:26941953-26941972 MS.gene053372:intron 30.0%
!!! TTGGTGATGTATGTGTTTTT+AGG - chr1.4:26943766-26943785 MS.gene053372:intron 30.0%
!!! TTTTTTTTTTCCAGCTCCAA+GGG + chr1.4:26942981-26943000 None:intergenic 30.0%
!!! TTTTTTTTTTTCCAGCTCCA+AGG + chr1.4:26942982-26943001 None:intergenic 30.0%
AAATATTCACTACGGGTATG+GGG - chr1.4:26943234-26943253 MS.gene053372:CDS 35.0%
AATTCAGAATAAATGGGGGT+TGG - chr1.4:26943712-26943731 MS.gene053372:intron 35.0%
ATGCGAAGCAATCTTTATCA+GGG + chr1.4:26942502-26942521 None:intergenic 35.0%
ATGTCTTCTCACAAAACTTG+CGG + chr1.4:26941852-26941871 None:intergenic 35.0%
CACAATCCATCATGTAGATT+AGG + chr1.4:26943411-26943430 None:intergenic 35.0%
CAGGACCAATAATAGGATAT+AGG - chr1.4:26942822-26942841 MS.gene053372:intron 35.0%
GGGTAGACTTAAATTAGACT+GGG + chr1.4:26943109-26943128 None:intergenic 35.0%
TATGAAATGTTGCATGTGCT+TGG + chr1.4:26942288-26942307 None:intergenic 35.0%
TGCCTCGTAGCAAAATTATT+TGG + chr1.4:26943603-26943622 None:intergenic 35.0%
TGGGTAGACTTAAATTAGAC+TGG + chr1.4:26943110-26943129 None:intergenic 35.0%
! AGTTCTCTATTTTCCTTCCA+CGG - chr1.4:26942916-26942935 MS.gene053372:CDS 35.0%
! CATAGAGTTTTACGAGAAAG+TGG - chr1.4:26942463-26942482 MS.gene053372:intron 35.0%
! TACCAGTTTTCCTTCTTGAA+GGG + chr1.4:26941626-26941645 None:intergenic 35.0%
! TATGATGCAAAAGGCATACA+TGG - chr1.4:26942523-26942542 MS.gene053372:intron 35.0%
! TCTGAGTGATTCACAACTTT+TGG - chr1.4:26942003-26942022 MS.gene053372:intron 35.0%
! TTACCAGTTTTCCTTCTTGA+AGG + chr1.4:26941627-26941646 None:intergenic 35.0%
!! CAAGTTTTGTGAGAAGACAT+TGG - chr1.4:26941852-26941871 MS.gene053372:intron 35.0%
!!! ATGTTTGGTTTTGCAATGGT+TGG - chr1.4:26941957-26941976 MS.gene053372:intron 35.0%
AAAAAGTGGACACCATGATC+AGG + chr1.4:26941583-26941602 None:intergenic 40.0%
AAAACTCGTCAAATCTGGGT+GGG + chr1.4:26942742-26942761 None:intergenic 40.0%
ACCATGCCTAATCTACATGA+TGG - chr1.4:26943402-26943421 MS.gene053372:CDS 40.0%
ACGAGTTTGGATATGAGTTC+GGG + chr1.4:26942862-26942881 None:intergenic 40.0%
AGGGAAAACTCGTCAAATCT+GGG + chr1.4:26942746-26942765 None:intergenic 40.0%
ATCCTCGTTGAGTATGACTA+GGG - chr1.4:26943309-26943328 MS.gene053372:CDS 40.0%
CATGCGAAGCAATCTTTATC+AGG + chr1.4:26942503-26942522 None:intergenic 40.0%
CTTCGCATGTATGATGCAAA+AGG - chr1.4:26942514-26942533 MS.gene053372:intron 40.0%
GACGAGTTTGGATATGAGTT+CGG + chr1.4:26942863-26942882 None:intergenic 40.0%
GTAGATTAGGCATGGTCAAT+GGG + chr1.4:26943398-26943417 None:intergenic 40.0%
GTATATTTGCAGGGACTGAA+TGG + chr1.4:26943039-26943058 None:intergenic 40.0%
GTGATTGTACTCCGTAAATG+TGG - chr1.4:26942058-26942077 MS.gene053372:intron 40.0%
TACCCTTCAAGAAGGAAAAC+TGG - chr1.4:26941621-26941640 MS.gene053372:CDS 40.0%
TAGGAAGTCGTAGAGTAACT+GGG + chr1.4:26941892-26941911 None:intergenic 40.0%
TCCATCATGTAGATTAGGCA+TGG + chr1.4:26943406-26943425 None:intergenic 40.0%
TCTTCTCATGAACCTGATCA+TGG - chr1.4:26941568-26941587 MS.gene053372:CDS 40.0%
TGTAGATTAGGCATGGTCAA+TGG + chr1.4:26943399-26943418 None:intergenic 40.0%
TGTCTTCTCACAAAACTTGC+GGG + chr1.4:26941851-26941870 None:intergenic 40.0%
TTAGGAAGTCGTAGAGTAAC+TGG + chr1.4:26941893-26941912 None:intergenic 40.0%
TTGCATTACAATAGTGCCCT+TGG - chr1.4:26942962-26942981 MS.gene053372:CDS 40.0%
TTTGTGAGAAGACATTGGCA+AGG - chr1.4:26941857-26941876 MS.gene053372:intron 40.0%
! CTTGGACTTTTCTCTTCTCA+AGG + chr1.4:26942270-26942289 None:intergenic 40.0%
! GAAGACGGTGATGAAGATTT+TGG + chr1.4:26942196-26942215 None:intergenic 40.0%
!! CTTGAAAGTACCCTTCAAGA+AGG - chr1.4:26941613-26941632 MS.gene053372:CDS 40.0%
ACCCAAACTCAGTCAAAGCA+GGG + chr1.4:26942765-26942784 None:intergenic 45.0%
ATACACCAGAGTGACATCCA+GGG + chr1.4:26942885-26942904 None:intergenic 45.0%
ATGCAAAAGAGAGAAGCCGA+AGG + chr1.4:26942948-26942967 None:intergenic 45.0%
CAGGGAAAACTCGTCAAATC+TGG + chr1.4:26942747-26942766 None:intergenic 45.0%
CATCCTCGTTGAGTATGACT+AGG - chr1.4:26943308-26943327 MS.gene053372:CDS 45.0%
CGAGTTTGGATATGAGTTCG+GGG + chr1.4:26942861-26942880 None:intergenic 45.0%
GAAAACTCGTCAAATCTGGG+TGG + chr1.4:26942743-26942762 None:intergenic 45.0%
TACCCTAGTCATACTCAACG+AGG + chr1.4:26943314-26943333 None:intergenic 45.0%
TCCCTGCTTTGACTGAGTTT+GGG - chr1.4:26942761-26942780 MS.gene053372:intron 45.0%
TTCCCTGCTTTGACTGAGTT+TGG - chr1.4:26942760-26942779 MS.gene053372:intron 45.0%
TTCGGTCGGGTAACGAATAT+GGG + chr1.4:26942719-26942738 None:intergenic 45.0%
TTTGGATATGAGTTCGGGGT+TGG + chr1.4:26942857-26942876 None:intergenic 45.0%
AGGCATCTGCAAAGGATGGA+AGG - chr1.4:26943618-26943637 MS.gene053372:intron 50.0%
CATACACCAGAGTGACATCC+AGG + chr1.4:26942886-26942905 None:intergenic 50.0%
CTCATATCCAAACTCGTCCC+TGG - chr1.4:26942865-26942884 MS.gene053372:intron 50.0%
GACCCAAACTCAGTCAAAGC+AGG + chr1.4:26942766-26942785 None:intergenic 50.0%
GTTCGGTCGGGTAACGAATA+TGG + chr1.4:26942720-26942739 None:intergenic 50.0%
TACAATAGTGCCCTTGGAGC+TGG - chr1.4:26942968-26942987 MS.gene053372:CDS 50.0%
TTAGGCATGGTCAATGGGTG+AGG + chr1.4:26943393-26943412 None:intergenic 50.0%
! CTTTTGCCTCGCGAAGATGA+AGG + chr1.4:26942172-26942191 None:intergenic 50.0%
! TACGAGGCATCTGCAAAGGA+TGG - chr1.4:26943614-26943633 MS.gene053372:intron 50.0%
! TCGTCAAATCTGGGTGGGTT+CGG + chr1.4:26942737-26942756 None:intergenic 50.0%
! TTGCTACGAGGCATCTGCAA+AGG - chr1.4:26943610-26943629 MS.gene053372:intron 50.0%
!! ATGAGTTCGGGGTTGGTACT+AGG + chr1.4:26942850-26942869 None:intergenic 50.0%
AATGTCACCCCCGTCCCTAT+GGG + chr1.4:26943280-26943299 None:intergenic 55.0%
ACCCTATCACGCTCTCTGCT+AGG - chr1.4:26941683-26941702 MS.gene053372:CDS 55.0%
ACGGGTATGGGGATGAGACA+GGG - chr1.4:26943245-26943264 MS.gene053372:CDS 55.0%
CCCTATCACGCTCTCTGCTA+GGG - chr1.4:26941684-26941703 MS.gene053372:CDS 55.0%
CCTTCCACGGCTCATACCTT+CGG - chr1.4:26942929-26942948 MS.gene053372:CDS 55.0%
GAGGATCCTTCATCTTCGCG+AGG - chr1.4:26942163-26942182 MS.gene053372:intron 55.0%
GTGACATCCAGGGACGAGTT+TGG + chr1.4:26942875-26942894 None:intergenic 55.0%
TACGGGTATGGGGATGAGAC+AGG - chr1.4:26943244-26943263 MS.gene053372:CDS 55.0%
! AAATCTGGGTGGGTTCGGTC+GGG + chr1.4:26942732-26942751 None:intergenic 55.0%
! ACCCTAGCAGAGAGCGTGAT+AGG + chr1.4:26941688-26941707 None:intergenic 55.0%
! CAAATCTGGGTGGGTTCGGT+CGG + chr1.4:26942733-26942752 None:intergenic 55.0%
! CCCTAGCAGAGAGCGTGATA+GGG + chr1.4:26941687-26941706 None:intergenic 55.0%
ACAGGGATGCCCGAACCCAT+AGG - chr1.4:26943262-26943281 MS.gene053372:CDS 60.0%
ATGCCCGAACCCATAGGGAC+GGG - chr1.4:26943268-26943287 MS.gene053372:CDS 60.0%
CAGGGATGCCCGAACCCATA+GGG - chr1.4:26943263-26943282 MS.gene053372:CDS 60.0%
CTCGTCCCTGGATGTCACTC+TGG - chr1.4:26942877-26942896 MS.gene053372:CDS 60.0%
GAATGTCACCCCCGTCCCTA+TGG + chr1.4:26943281-26943300 None:intergenic 60.0%
GATGCCCGAACCCATAGGGA+CGG - chr1.4:26943267-26943286 MS.gene053372:CDS 60.0%
GGCATGGTCAATGGGTGAGG+TGG + chr1.4:26943390-26943409 None:intergenic 60.0%
! CCGAAGGTATGAGCCGTGGA+AGG + chr1.4:26942932-26942951 None:intergenic 60.0%
! GAAGCCGAAGGTATGAGCCG+TGG + chr1.4:26942936-26942955 None:intergenic 60.0%
ACCCCCGTCCCTATGGGTTC+GGG + chr1.4:26943274-26943293 None:intergenic 65.0%
CACCCCCGTCCCTATGGGTT+CGG + chr1.4:26943275-26943294 None:intergenic 65.0%
TGCCCGAACCCATAGGGACG+GGG - chr1.4:26943269-26943288 MS.gene053372:CDS 65.0%
GCCCGAACCCATAGGGACGG+GGG - chr1.4:26943270-26943289 MS.gene053372:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 26941565 26943869 26941565 ID=MS.gene053372
chr1.4 mRNA 26941565 26943869 26941565 ID=MS.gene053372.t1;Parent=MS.gene053372
chr1.4 exon 26943792 26943869 26943792 ID=MS.gene053372.t1.exon1;Parent=MS.gene053372.t1
chr1.4 CDS 26943792 26943869 26943792 ID=cds.MS.gene053372.t1;Parent=MS.gene053372.t1
chr1.4 exon 26943106 26943592 26943106 ID=MS.gene053372.t1.exon2;Parent=MS.gene053372.t1
chr1.4 CDS 26943106 26943592 26943106 ID=cds.MS.gene053372.t1;Parent=MS.gene053372.t1
chr1.4 exon 26942875 26943005 26942875 ID=MS.gene053372.t1.exon3;Parent=MS.gene053372.t1
chr1.4 CDS 26942875 26943005 26942875 ID=cds.MS.gene053372.t1;Parent=MS.gene053372.t1
chr1.4 exon 26941565 26941840 26941565 ID=MS.gene053372.t1.exon4;Parent=MS.gene053372.t1
chr1.4 CDS 26941565 26941840 26941565 ID=cds.MS.gene053372.t1;Parent=MS.gene053372.t1
Gene Sequence

>MS.gene053372

ATGTCTTCTCATGAACCTGATCATGGTGTCCACTTTTTCAAGATTATTCTTGAAAGTACCCTTCAAGAAGGAAAACTGGTAATAATGTTTTTTTTTTTCAAACATTTTTTTTTCATTGACCCTATCACGCTCTCTGCTAGGGTTTCTATTCATTGTGTTATTAAAGAATCGTTCATATTAATGACATATTAATCGTTCATAGTTTATGTCGGTTGCAGTGCTAAGATTATTTTTCATCTATTGATGTTTTTTTTGCTGATTTGTGTGTGTGTGACAGAGAGTTCCCGCAAGTTTTGTGAGAAGACATTGGCAAGGAATAACAAACCCAGTTACTCTACGACTTCCTAATACTACTGAAAAGAAAGTTTATTGGGAGAAAACTAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCTAATTATGTGTCTCTGAGTGATTCACAACTTTTGGTATTTAAATTTAATGAAAATTCTCTCTTCAATGTGATTGTACTCCGTAAATGTGGATTAGAGATAAAATACCCTTCAAGAGAAATTAGTGAAGAATCTGAAGAAGTTGAAGAGAGCGATAGTTCTCTTATAGTTGTTGAGGATCCTTCATCTTCGCGAGGCAAAAGACCAAAATCTTCATCACCGTCTTCAAAAGTTTATAAGAAGATGAAAATCAACCTAAAAGAGCATAAAGAATCTAACCTTGAGAAGAGAAAAGTCCAAGCACATGCAACATTTCATAATTTTAAGGATATTCACAAAGGTTGGTTTAATTCTATAATTTTAGTATGTTTCTTTTTTCTAAATTTTCTCTTATTCCTGGTGTTGCTAATTAATACTTTTTTTTTGGTGAAAATATTCAGGAAGAACTAGTTTCGATGATCTTAAGAAGAGAAGCATAGAGTTTTACGAGAAAGTGGAGCAAAAATTCTACCCTGATAAAGATTGCTTCGCATGTATGATGCAAAAGGCATACATGGAAAATGATCTCTTGGTAACATATACTACTTTTTTTTGGTGAATATGGCAACATACTATTTGATTACATACATAAAATTCCATTGAATTATACCATAAATTAATGCCACTTTGTAATAATATTTCTTTGAACAGTTGTGCATTGATATCTACATTAGGCATGACAACAAAACCCATATTCGTTACCCGACCGAACCCACCCAGATTTGACGAGTTTTCCCTGCTTTGACTGAGTTTGGGTCTGAGTTTTAATTTTCACCGATTTTAAAACATAGATACAGGACCAATAATAGGATATAGGTACCTAGTACCAACCCCGAACTCATATCCAAACTCGTCCCTGGATGTCACTCTGGTGTATGCACTTACTTGAGTTCTCTATTTTCCTTCCACGGCTCATACCTTCGGCTTCTCTCTTTTGCATTACAATAGTGCCCTTGGAGCTGGAAAAAAAAAAACTTCTTTTTGTATTAAAAAAAAAAGCTTAAATAACCATTCAGTCCCTGCAAATATACACCATTTGATTTTTCATACCATAACTTAAGTCATACATGTTCTATCTCCCAGTCTAATTTAAGTCTACCCAACACATATCACTTAATTTTAATCTTATTTATGTTGGTCAATTATGTGACCTTGACTATGAAATTACTTCTCTATGGGATAATATAACTTTTTACGAATAAAAAAAAATATTCACTACGGGTATGGGGATGAGACAGGGATGCCCGAACCCATAGGGACGGGGGTGACATTCAATTTCTCATCCTCGTTGAGTATGACTAGGGTAACGAGTAAGTATATGAGAATTGAGGATAAAAATAGGGAAGGTAAAACTCGTCTCCACCTCACCCATTGACCATGCCTAATCTACATGATGGATTGTGATTGATTGCATGTGTAAAGAGTATTTACAAAGATAGTTCATACAAAAAAAACCATTCATTCATATGATTGAAAGTTAGAAATTGCATCCATTTAGTCATTTTATTTTGGTTTTGGAAGTTGAGTTATTGATTATTTTATTTGAAAACACATAATCCAAAACAGGTCATACCAAATAATTTTGCTACGAGGCATCTGCAAAGGATGGAAGGAAGAAGAATTACGCTTTTTGATGACAAAGATAGAAAATGGGATGTTAATTTGAAACTCACTCCAACTAAACAATTCAGAATAAATGGGGGTTGGAGTAAATTCCGTGCTGACCATAATGTTAAATTTGGTGATGTATGTGTTTTTAGGCTAAACAAATGCAAAGAAAAAGTTTCATTCAAAGTTACTATTTTCTCCATAGAAAAGGACATGATCATTCCCTATTTTTGA
Protein sequence

>MS.gene053372.t1

MSSHEPDHGVHFFKIILESTLQEGKLRVPASFVRRHWQGITNPVTLRLPNTTEKKVYWEKTSDYDVWFCNGWKEFANYVSLSDSQLLVFKFNENSLFNVIVLRKCGLEIKYPSREISEESEEVEESDSSLIVVEDPSSSRGKRPKSSSPSSKVYKKMKINLKEHKESNLEKRKVQAHATFHNFKDIHKGRTSFDDLKKRSIEFYEKVEQKFYPDKDCFACMMQKAYMENDLLVIPNNFATRHLQRMEGRRITLFDDKDRKWDVNLKLTPTKQFRINGGWSKFRADHNVKFGDVCVFRLNKCKEKVSFKVTIFSIEKDMIIPYF