AlfalfaGEDB | MS.gene053471

M. sativa cultivar XinJiangDaYe / MS.gene053471

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053471.t1	PNX66407.1	55.8	95	41	1	19	113	5	98	7.10E-23	116.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053471.t1	A0A2K3KJF0	55.8	95	41	1	19	113	5	98	5.1e-23	116.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene053471.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 29 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGGGCTCGGTGATGA+TGG	0.458382	4.3:+26304367	MS.gene053471:CDS
AAAATTAAATATGCTGATGT+TGG	0.512010	4.3:+26304490	MS.gene053471:CDS
AAAGTGTAATGGTTGTGGAG+AGG	0.717802	4.3:+26304402	MS.gene053471:CDS
AACTGTCCAGGGTGATGTCC+AGG	0.490878	4.3:+26304270	MS.gene053471:CDS
AAGGCAGGAGGTAAAGACTA+CGG	0.573526	4.3:+26304430	MS.gene053471:CDS
AATCATCATCAACATCACCC+TGG	0.689396	4.3:-26304288	None:intergenic
ACTGTCCAGGGTGATGTCCA+GGG	0.682302	4.3:+26304271	MS.gene053471:CDS
AGATAATATGGATACTGTGG+AGG	0.601464	4.3:+26304237	MS.gene053471:CDS
AGGCAGGAGGTAAAGACTAC+GGG	0.586696	4.3:+26304431	MS.gene053471:CDS
AGGGAAAAGTGTAATGGTTG+TGG	0.529106	4.3:+26304397	MS.gene053471:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTTAGATTTGTGGGAC+AGG	-	chr4.3:26304812-26304831	None:intergenic	30.0%
AAATTAGAGAACAGCAAAAC+AGG	-	chr4.3:26304724-26304743	None:intergenic	30.0%
ACGTTGTCAATTTATCATGA+TGG	+	chr4.3:26305167-26305186	MS.gene053471:intron	30.0%
ATGATTCACCTACTAATAAG+AGG	+	chr4.3:26304305-26304324	MS.gene053471:CDS	30.0%
ATGTTTACAAAAATAGGGCT+CGG	+	chr4.3:26304358-26304377	MS.gene053471:CDS	30.0%
CTAACAACATCATTATCGAA+TGG	-	chr4.3:26304214-26304233	None:intergenic	30.0%
CTTATTTAGAAAGCTTGGAT+TGG	+	chr4.3:26305065-26305084	MS.gene053471:intron	30.0%
GTTCAATATCGTTAAGACTA+GGG	-	chr4.3:26304924-26304943	None:intergenic	30.0%
TAACCAATGAGCAGATTATA+TGG	+	chr4.3:26304563-26304582	MS.gene053471:intron	30.0%
TGATTCACCTACTAATAAGA+GGG	+	chr4.3:26304306-26304325	MS.gene053471:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	26304196	26305319	26304196	ID=MS.gene053471
chr4.3	mRNA	26304196	26305319	26304196	ID=MS.gene053471.t1;Parent=MS.gene053471
chr4.3	exon	26304196	26304535	26304196	ID=MS.gene053471.t1.exon1;Parent=MS.gene053471.t1
chr4.3	CDS	26304196	26304535	26304196	ID=cds.MS.gene053471.t1;Parent=MS.gene053471.t1
chr4.3	exon	26305315	26305319	26305315	ID=MS.gene053471.t1.exon2;Parent=MS.gene053471.t1
chr4.3	CDS	26305315	26305319	26305315	ID=cds.MS.gene053471.t1;Parent=MS.gene053471.t1

Gene Sequence

>MS.gene053471

ATGGAATCACAACAACCATTCGATAATGATGTTGTTAGCGAAGATAATATGGATACTGTGGAGGGTGAGAATGAAACTGTCCAGGGTGATGTCCAGGGTGATGTTGATGATGATTCACCTACTAATAAGAGGGCAAGAACTTGCAAGGCTGAATGTTGGAAAATGTTTACAAAAATAGGGCTCGGTGATGATGGAATTCCAAGGGAAAAGTGTAATGGTTGTGGAGAGGTGTTTAAGGCAGGAGGTAAAGACTACGGGACATCATCATTGAATCGCCATATGAAGAAGTGCAAGAAAATTAAATATGCTGATGTTGGTCAAGTGATGATTGACTTGCAAGGTAAACACATATGTTGCTTAGATAAGGTAACCAATGAGCAGATTATATGGCCAAACTTGGAGCTTCTACTGATGTTGCTTTCACGGTTCACTCTGCGCCTCCGGAGTTACTTATCCCTCTGTTGAGAACAGATGAGAGAGGTTCTATTTTTATTAGGCGCTAGTATTTTCTTCTTTCTTTCTTTTCCTGTTTTGCTGTTCTCTAATTTGCTTTGTAACAAAAAAAAAAGTAAGTCTTGACTATGTATTTTGGTTATTGATTGTCATATTGATACCTGTCCCACAAATCTAAATTTTATATTGGTGTGAGATTCGAAGTTCACGAATTCACAACATGTAAATTAACCAATATTAGAATAAGTAGGATTCAAAACGCTTTTAAATAACCCTAGTCTTAACGATATTGAACACGTCCAATTTTTTAGATTTCGAAAAAATGTAGTCAAATTAATGTGGTCAATACAACCTCAAGTAGTGTTGTTGTTTCGATAATTTATAAATTGTCACAACAAAGTTGGCGCTATCAAATACTTATTTAGAAAGCTTGGATTGGATCCCACTCCAACATATTTCTAAAGTTTATCTATTAAAATTGATTAAATATGCATGCACCATTAGTGTAAAGATATTTTACGTTGTCAATTTATCATGATGGTTAAATAATTAAAAACATTTGACTTTATTAATAACTACTTTTTTTATTTGACAAATTTATTCATAACTACTTGTAAAGTCATTTATTTGATTGGTTATAATTTGCTAAGTAAAATGTATACATAGACTAA

Protein sequence

>MS.gene053471.t1

MESQQPFDNDVVSEDNMDTVEGENETVQGDVQGDVDDDSPTNKRARTCKAECWKMFTKIGLGDDGIPREKCNGCGEVFKAGGKDYGTSSLNRHMKKCKKIKYADVGQVMIDLQD