Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053532.t1 | XP_003607934.1 | 86.6 | 305 | 40 | 1 | 1 | 305 | 1 | 304 | 1.70E-140 | 508.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053532.t1 | Q9FXA3 | 34.3 | 137 | 73 | 4 | 175 | 305 | 181 | 306 | 1.1e-10 | 68.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053532.t1 | G7JK21 | 86.6 | 305 | 40 | 1 | 1 | 305 | 1 | 304 | 1.2e-140 | 508.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene053532.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053532.t1 | MTR_4g085660 | 93.443 | 305 | 19 | 1 | 1 | 305 | 1 | 304 | 0.0 | 539 |
| MS.gene053532.t1 | MTR_4g085700 | 88.562 | 306 | 33 | 2 | 1 | 305 | 1 | 305 | 0.0 | 501 |
| MS.gene053532.t1 | MTR_4g081980 | 45.066 | 304 | 126 | 9 | 1 | 300 | 1 | 267 | 1.65e-57 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053532.t1 | AT1G49770 | 33.333 | 324 | 160 | 8 | 12 | 305 | 9 | 306 | 6.80e-42 | 147 |
Find 63 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTTGATTCCTTCTTTC+TGG | 0.071265 | 4.3:+27069828 | None:intergenic |
| TCACCTAAGTTATCAGAATT+TGG | 0.102923 | 4.3:+27069887 | None:intergenic |
| TGAAAATTTCTACATGATTA+TGG | 0.218947 | 4.3:-27068611 | MS.gene053532:CDS |
| AGCCTTCATGCCTTGCTTCC+TGG | 0.278222 | 4.3:-27069638 | MS.gene053532:CDS |
| GCTTCCTGGACTTCCTTCTA+AGG | 0.294840 | 4.3:-27069624 | MS.gene053532:intron |
| GAAAATGAATTTACCTTAGA+AGG | 0.295761 | 4.3:+27069611 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4.3:+27068906 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.303231 | 4.3:+27069836 | None:intergenic |
| CACCTAAGTTATCAGAATTT+GGG | 0.327636 | 4.3:+27069888 | None:intergenic |
| CTCAAATGTGTATCCCCATT+TGG | 0.335851 | 4.3:-27068964 | MS.gene053532:CDS |
| AAACCTACTTGTTGCATTTG+AGG | 0.351914 | 4.3:+27068796 | None:intergenic |
| GTGTTCAGACAGGTTTCATT+TGG | 0.354346 | 4.3:-27069934 | MS.gene053532:CDS |
| TCTCTTGACCACAATTGCTT+TGG | 0.410651 | 4.3:-27068689 | MS.gene053532:CDS |
| TCAAATGTGTATCCCCATTT+GGG | 0.412830 | 4.3:-27068963 | MS.gene053532:CDS |
| ATTGAAAATGCATTATTTGA+AGG | 0.414433 | 4.3:+27068820 | None:intergenic |
| TGTTCAGACAGGTTTCATTT+GGG | 0.442568 | 4.3:-27069933 | MS.gene053532:CDS |
| GAAGAAGAGAAGTCGGGGTG+GGG | 0.447156 | 4.3:-27069789 | MS.gene053532:CDS |
| CAGATGACTCACTCCCAAAT+GGG | 0.455516 | 4.3:+27068950 | None:intergenic |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4.3:-27069673 | MS.gene053532:CDS |
| ACAGATGACTCACTCCCAAA+TGG | 0.463724 | 4.3:+27068949 | None:intergenic |
| GGAAGAAGAGAAGTCGGGGT+GGG | 0.468059 | 4.3:-27069790 | MS.gene053532:CDS |
| TTGAAAAGAAGAAGCAAGAA+AGG | 0.480003 | 4.3:-27068987 | MS.gene053532:CDS |
| GAAACATACAAGCATGCGGC+TGG | 0.489565 | 4.3:-27068281 | MS.gene053532:CDS |
| CATGATCAAGGTGTTCAGAC+AGG | 0.491804 | 4.3:-27069944 | MS.gene053532:CDS |
| TTTACCTTAGAAGGAAGTCC+AGG | 0.494353 | 4.3:+27069620 | None:intergenic |
| CTCCAACACCAAAGCAATTG+TGG | 0.500537 | 4.3:+27068681 | None:intergenic |
| GGTGAGGAAGAAGAGAAGTC+GGG | 0.501963 | 4.3:-27069795 | MS.gene053532:CDS |
| CATTTGGGAAAATCATCCAT+GGG | 0.506047 | 4.3:-27069918 | MS.gene053532:CDS |
| TCATTTGGGAAAATCATCCA+TGG | 0.517340 | 4.3:-27069919 | MS.gene053532:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4.3:+27068907 | None:intergenic |
| CGACTTCTCTTCTTCCTCAC+CGG | 0.522132 | 4.3:+27069797 | None:intergenic |
| GACCACAATTGCTTTGGTGT+TGG | 0.522135 | 4.3:-27068683 | MS.gene053532:CDS |
| CTCCCAAATTCTGATAACTT+AGG | 0.532632 | 4.3:-27069890 | MS.gene053532:CDS |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4.3:-27068915 | MS.gene053532:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4.3:-27068712 | MS.gene053532:CDS |
| GTCCAGGAAGCAAGGCATGA+AGG | 0.543319 | 4.3:+27069636 | None:intergenic |
| AGAAGGAAGTCCAGGAAGCA+AGG | 0.543964 | 4.3:+27069628 | None:intergenic |
| CTTCATTGCTGCATCTACAA+TGG | 0.548628 | 4.3:+27069044 | None:intergenic |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4.3:-27068892 | MS.gene053532:CDS |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4.3:-27069688 | MS.gene053532:CDS |
| ATTTGCATTGCACATGATGT+TGG | 0.560264 | 4.3:+27068633 | None:intergenic |
| AATCAACGAAGGAGATGCTC+CGG | 0.562362 | 4.3:-27069816 | MS.gene053532:CDS |
| ACGTGACGCAAATTCAATGA+AGG | 0.564753 | 4.3:-27068303 | MS.gene053532:CDS |
| CGGTGAGGAAGAAGAGAAGT+CGG | 0.568175 | 4.3:-27069796 | MS.gene053532:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4.3:-27069839 | MS.gene053532:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4.3:+27068694 | None:intergenic |
| ATACCTCAAATGCAACAAGT+AGG | 0.573192 | 4.3:-27068799 | MS.gene053532:CDS |
| AGGAAGAAGAGAAGTCGGGG+TGG | 0.581804 | 4.3:-27069791 | MS.gene053532:CDS |
| CAAGTTATTATTATAACTTG+AGG | 0.582073 | 4.3:+27068867 | None:intergenic |
| ATGAGTGTAGATCATGATCA+AGG | 0.591815 | 4.3:-27069956 | MS.gene053532:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.598595 | 4.3:+27069958 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4.3:-27068914 | MS.gene053532:CDS |
| AATGTTGTACTAAACATATG+TGG | 0.641101 | 4.3:-27068754 | MS.gene053532:CDS |
| CAGAAAGAAGGAATCAACGA+AGG | 0.651154 | 4.3:-27069827 | MS.gene053532:CDS |
| AGATGACTCACTCCCAAATG+GGG | 0.669367 | 4.3:+27068951 | None:intergenic |
| GTGAGGAAGAAGAGAAGTCG+GGG | 0.670559 | 4.3:-27069794 | MS.gene053532:CDS |
| GAAGGAAACATACAAGCATG+CGG | 0.683731 | 4.3:-27068285 | MS.gene053532:CDS |
| CGGCTGGAGAAATTATGATG+TGG | 0.687301 | 4.3:-27068265 | MS.gene053532:CDS |
| ACGAAGGAGATGCTCCGGTG+AGG | 0.689033 | 4.3:-27069811 | MS.gene053532:CDS |
| ATTTGGGAAAATCATCCATG+GGG | 0.693011 | 4.3:-27069917 | MS.gene053532:CDS |
| GAATTTGGGAGATCACCCCA+TGG | 0.708355 | 4.3:+27069902 | None:intergenic |
| GTTGTACTAAACATATGTGG+TGG | 0.748360 | 4.3:-27068751 | MS.gene053532:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4.3:-27068933 | MS.gene053532:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTTATATTTTAC+AGG | - | chr4.3:27069139-27069158 | MS.gene053532:intron | 10.0% |
| !! | AATATAACAAAATGATAAAG+AGG | + | chr4.3:27069658-27069677 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | - | chr4.3:27069720-27069739 | MS.gene053532:CDS | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | + | chr4.3:27069813-27069832 | None:intergenic | 15.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | + | chr4.3:27068712-27068731 | None:intergenic | 20.0% |
| !! | ATTGAAAATGCATTATTTGA+AGG | + | chr4.3:27069401-27069420 | None:intergenic | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | + | chr4.3:27069354-27069373 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | - | chr4.3:27069202-27069221 | MS.gene053532:intron | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | + | chr4.3:27068713-27068732 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | - | chr4.3:27069607-27069626 | MS.gene053532:intron | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | + | chr4.3:27069751-27069770 | None:intergenic | 20.0% |
| ! | AATGTTGTACTAAACATATG+TGG | - | chr4.3:27069464-27069483 | MS.gene053532:intron | 25.0% |
| ! | ATTAATTAGTTCAACAATCC+AGG | + | chr4.3:27068898-27068917 | None:intergenic | 25.0% |
| ! | GAAAATGAATTTACCTTAGA+AGG | + | chr4.3:27068610-27068629 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | - | chr4.3:27069879-27069898 | MS.gene053532:CDS | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | + | chr4.3:27069746-27069765 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | - | chr4.3:27069073-27069092 | MS.gene053532:intron | 25.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4.3:27069650-27069669 | None:intergenic | 30.0% | |
| CACCTAAGTTATCAGAATTT+GGG | + | chr4.3:27068333-27068352 | None:intergenic | 30.0% | |
| TCACCTAAGTTATCAGAATT+TGG | + | chr4.3:27068334-27068353 | None:intergenic | 30.0% | |
| TCCAAGTTTGACATTGTATT+CGG | + | chr4.3:27068844-27068863 | None:intergenic | 30.0% | |
| TTGAAAAGAAGAAGCAAGAA+AGG | - | chr4.3:27069231-27069250 | MS.gene053532:intron | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | - | chr4.3:27069432-27069451 | MS.gene053532:intron | 30.0% |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4.3:27068530-27068549 | MS.gene053532:intron | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4.3:27069633-27069652 | None:intergenic | 30.0% |
| !! | AAACATCTTCATTAGTCTTG+AGG | + | chr4.3:27069118-27069137 | None:intergenic | 30.0% |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4.3:27068379-27068398 | MS.gene053532:intron | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4.3:27069314-27069333 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | - | chr4.3:27069419-27069438 | MS.gene053532:intron | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | - | chr4.3:27068262-27068281 | MS.gene053532:CDS | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | + | chr4.3:27069588-27069607 | None:intergenic | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | - | chr4.3:27068301-27068320 | MS.gene053532:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4.3:27068300-27068319 | MS.gene053532:CDS | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | + | chr4.3:27068843-27068862 | None:intergenic | 35.0% | |
| CCACAAATGACGAATTGTTT+GGG | + | chr4.3:27069023-27069042 | None:intergenic | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | - | chr4.3:27068811-27068830 | MS.gene053532:CDS | 35.0% | |
| CTCCCAAATTCTGATAACTT+AGG | - | chr4.3:27068328-27068347 | MS.gene053532:intron | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4.3:27068545-27068564 | MS.gene053532:intron | 35.0% | |
| GCTAAGTTATACTTACCTCA+CGG | + | chr4.3:27068963-27068982 | None:intergenic | 35.0% | |
| GTTGTACTAAACATATGTGG+TGG | - | chr4.3:27069467-27069486 | MS.gene053532:intron | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | - | chr4.3:27069255-27069274 | MS.gene053532:intron | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4.3:27068299-27068318 | MS.gene053532:CDS | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | + | chr4.3:27069024-27069043 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | - | chr4.3:27068810-27068829 | MS.gene053532:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | - | chr4.3:27068285-27068304 | MS.gene053532:CDS | 35.0% | |
| TTAGGTGAGAGTAGCAAAAA+AGG | - | chr4.3:27068346-27068365 | MS.gene053532:intron | 35.0% | |
| TTGATCATGATCTACACTCA+TGG | + | chr4.3:27068263-27068282 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | - | chr4.3:27068937-27068956 | MS.gene053532:CDS | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | + | chr4.3:27069425-27069444 | None:intergenic | 35.0% |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4.3:27069634-27069653 | None:intergenic | 35.0% |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4.3:27068385-27068404 | None:intergenic | 35.0% |
| ACGTGACGCAAATTCAATGA+AGG | - | chr4.3:27069915-27069934 | MS.gene053532:CDS | 40.0% | |
| ATCGAAGTTCAAGAACCCTA+GGG | + | chr4.3:27068791-27068810 | None:intergenic | 40.0% | |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4.3:27069506-27069525 | MS.gene053532:intron | 40.0% | |
| CAGAAAGAAGGAATCAACGA+AGG | - | chr4.3:27068391-27068410 | MS.gene053532:intron | 40.0% | |
| CCCAAACAATTCGTCATTTG+TGG | - | chr4.3:27069020-27069039 | MS.gene053532:CDS | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | - | chr4.3:27068840-27068859 | MS.gene053532:CDS | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | + | chr4.3:27068814-27068833 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | - | chr4.3:27069254-27069273 | MS.gene053532:intron | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | + | chr4.3:27069177-27069196 | None:intergenic | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | - | chr4.3:27069933-27069952 | MS.gene053532:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4.3:27069315-27069334 | None:intergenic | 40.0% | |
| GTGTTCAGACAGGTTTCATT+TGG | - | chr4.3:27068284-27068303 | MS.gene053532:CDS | 40.0% | |
| TAGCCAAAAATTGTTCCACC+CGG | - | chr4.3:27068979-27068998 | MS.gene053532:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4.3:27069529-27069548 | MS.gene053532:intron | 40.0% | |
| TTAGTCTCTTTGATTGCACC+TGG | - | chr4.3:27068877-27068896 | MS.gene053532:CDS | 40.0% | |
| TTTACCTTAGAAGGAAGTCC+AGG | + | chr4.3:27068601-27068620 | None:intergenic | 40.0% | |
| ! | AGAACTCGATTTTCATTCCC+GGG | + | chr4.3:27069000-27069019 | None:intergenic | 40.0% |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4.3:27069326-27069345 | MS.gene053532:intron | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+CGG | + | chr4.3:27069001-27069020 | None:intergenic | 40.0% |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | + | chr4.3:27068393-27068412 | None:intergenic | 40.0% |
| AATCAACGAAGGAGATGCTC+CGG | - | chr4.3:27068402-27068421 | MS.gene053532:intron | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | + | chr4.3:27069272-27069291 | None:intergenic | 45.0% | |
| AGATGACTCACTCCCAAATG+GGG | + | chr4.3:27069270-27069289 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+GGG | - | chr4.3:27068980-27068999 | MS.gene053532:CDS | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4.3:27069303-27069322 | MS.gene053532:intron | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | + | chr4.3:27069271-27069290 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4.3:27069285-27069304 | MS.gene053532:intron | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | - | chr4.3:27069953-27069972 | MS.gene053532:CDS | 45.0% | |
| CTCCAACACCAAAGCAATTG+TGG | + | chr4.3:27069540-27069559 | None:intergenic | 45.0% | |
| GATCGAAGTTCAAGAACCCT+AGG | + | chr4.3:27068792-27068811 | None:intergenic | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4.3:27069304-27069323 | MS.gene053532:intron | 45.0% | |
| TCGAAGTTCAAGAACCCTAG+GGG | + | chr4.3:27068790-27068809 | None:intergenic | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | - | chr4.3:27068817-27068836 | MS.gene053532:CDS | 45.0% | |
| TTCATGCACTAGATCCCCTA+GGG | - | chr4.3:27068773-27068792 | MS.gene053532:CDS | 45.0% | |
| TTTCATGCACTAGATCCCCT+AGG | - | chr4.3:27068772-27068791 | MS.gene053532:CDS | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | + | chr4.3:27068838-27068857 | None:intergenic | 45.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | - | chr4.3:27068274-27068293 | MS.gene053532:CDS | 45.0% |
| ! | GACCACAATTGCTTTGGTGT+TGG | - | chr4.3:27069535-27069554 | MS.gene053532:intron | 45.0% |
| ! | TTCCCGGGTGGAACAATTTT+TGG | + | chr4.3:27068985-27069004 | None:intergenic | 45.0% |
| AGAAGGAAGTCCAGGAAGCA+AGG | + | chr4.3:27068593-27068612 | None:intergenic | 50.0% | |
| CGACTTCTCTTCTTCCTCAC+CGG | + | chr4.3:27068424-27068443 | None:intergenic | 50.0% | |
| CGGTGAGGAAGAAGAGAAGT+CGG | - | chr4.3:27068422-27068441 | MS.gene053532:intron | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | - | chr4.3:27069937-27069956 | MS.gene053532:CDS | 50.0% | |
| GAATTTGGGAGATCACCCCA+TGG | + | chr4.3:27068319-27068338 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4.3:27069527-27069546 | None:intergenic | 50.0% | |
| GCTTCCTGGACTTCCTTCTA+AGG | - | chr4.3:27068594-27068613 | MS.gene053532:intron | 50.0% | |
| GGTGAGGAAGAAGAGAAGTC+GGG | - | chr4.3:27068423-27068442 | MS.gene053532:intron | 50.0% | |
| GTGAGGAAGAAGAGAAGTCG+GGG | - | chr4.3:27068424-27068443 | MS.gene053532:intron | 50.0% | |
| ! | ACTCGATTTTCATTCCCGGG+TGG | + | chr4.3:27068997-27069016 | None:intergenic | 50.0% |
| ACCTCACGGCCAAACTTCGA+AGG | + | chr4.3:27068949-27068968 | None:intergenic | 55.0% | |
| ACCTTCGAAGTTTGGCCGTG+AGG | - | chr4.3:27068945-27068964 | MS.gene053532:CDS | 55.0% | |
| AGCCTTCATGCCTTGCTTCC+TGG | - | chr4.3:27068580-27068599 | MS.gene053532:intron | 55.0% | |
| AGGAAGAAGAGAAGTCGGGG+TGG | - | chr4.3:27068427-27068446 | MS.gene053532:intron | 55.0% | |
| GAAGAAGAGAAGTCGGGGTG+GGG | - | chr4.3:27068429-27068448 | MS.gene053532:intron | 55.0% | |
| GGAAGAAGAGAAGTCGGGGT+GGG | - | chr4.3:27068428-27068447 | MS.gene053532:intron | 55.0% | |
| GTCCAGGAAGCAAGGCATGA+AGG | + | chr4.3:27068585-27068604 | None:intergenic | 55.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | - | chr4.3:27068407-27068426 | MS.gene053532:intron | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | + | chr4.3:27068825-27068844 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27068256 | 27069984 | 27068256 | ID=MS.gene053532 |
| chr4.3 | mRNA | 27068256 | 27069984 | 27068256 | ID=MS.gene053532.t1;Parent=MS.gene053532 |
| chr4.3 | exon | 27069625 | 27069984 | 27069625 | ID=MS.gene053532.t1.exon1;Parent=MS.gene053532.t1 |
| chr4.3 | CDS | 27069625 | 27069984 | 27069625 | ID=cds.MS.gene053532.t1;Parent=MS.gene053532.t1 |
| chr4.3 | exon | 27068606 | 27069079 | 27068606 | ID=MS.gene053532.t1.exon2;Parent=MS.gene053532.t1 |
| chr4.3 | CDS | 27068606 | 27069079 | 27068606 | ID=cds.MS.gene053532.t1;Parent=MS.gene053532.t1 |
| chr4.3 | exon | 27068256 | 27068339 | 27068256 | ID=MS.gene053532.t1.exon3;Parent=MS.gene053532.t1 |
| chr4.3 | CDS | 27068256 | 27068339 | 27068256 | ID=cds.MS.gene053532.t1;Parent=MS.gene053532.t1 |
| Gene Sequence |
| Protein sequence |
