AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053680.t1 MTR_4g084740 93.333 90 6 0 1 90 1 90 2.30e-56 177
MS.gene053680.t1 MTR_5g061740 82.474 97 1 1 1 97 1 81 4.72e-49 158
MS.gene053680.t1 MTR_3g102570 78.205 78 17 0 1 78 1 78 1.51e-39 134
MS.gene053680.t1 MTR_3g005530 65.714 70 23 1 1 70 1 69 3.07e-25 94.7
MS.gene053680.t1 MTR_7g075870 60.000 70 28 0 1 70 1 70 4.66e-25 94.0
MS.gene053680.t1 MTR_2g017865 61.429 70 26 1 1 70 16 84 1.34e-24 93.6
MS.gene053680.t1 MTR_3g452380 70.690 58 17 0 1 58 16 73 1.84e-24 93.2
MS.gene053680.t1 MTR_5g046870 57.143 70 30 0 1 70 1 70 1.97e-24 89.7
MS.gene053680.t1 MTR_4g108720 54.430 79 35 1 1 78 1 79 2.19e-24 94.7
MS.gene053680.t1 MTR_7g075850 64.789 71 24 1 1 70 1 71 2.96e-24 92.8
MS.gene053680.t1 MTR_0003s0590 51.429 105 41 3 1 103 1 97 9.14e-24 91.7
MS.gene053680.t1 MTR_8g087860 70.690 58 17 0 1 58 17 74 1.01e-23 91.3
MS.gene053680.t1 MTR_5g041650 58.228 79 32 1 1 78 38 116 1.18e-23 93.2
MS.gene053680.t1 MTR_7g075870 60.000 70 27 1 1 70 1 69 1.68e-23 89.7
MS.gene053680.t1 MTR_7g016600 58.571 70 29 0 1 70 1 70 2.19e-23 90.5
MS.gene053680.t1 MTR_8g097090 58.571 70 29 0 1 70 1 70 4.26e-23 89.4
MS.gene053680.t1 MTR_1g053070 59.722 72 28 1 1 72 1 71 5.11e-23 89.4
MS.gene053680.t1 MTR_8g033220 60.000 70 27 1 1 70 1 69 7.32e-23 88.6
MS.gene053680.t1 MTR_3g084980 58.571 70 29 0 1 70 1 70 7.45e-23 89.0
MS.gene053680.t1 MTR_8g033220 60.000 70 27 1 1 70 1 69 9.25e-23 88.2
MS.gene053680.t1 MTR_6g015975 58.571 70 29 0 1 70 1 70 9.82e-23 88.6
MS.gene053680.t1 MTR_4g109810 57.143 70 30 0 1 70 1 70 1.73e-22 87.8
MS.gene053680.t1 MTR_4g109830 49.425 87 44 0 1 87 1 87 2.16e-22 87.4
MS.gene053680.t1 MTR_8g033270 60.000 70 27 1 1 70 1 69 3.17e-22 87.4
MS.gene053680.t1 MTR_7g016630 55.714 70 31 0 1 70 1 70 7.31e-22 86.7
MS.gene053680.t1 MTR_4g102530 58.571 70 28 1 1 70 1 69 1.07e-21 85.1
MS.gene053680.t1 MTR_8g066260 54.286 70 32 0 1 70 1 70 1.30e-21 85.5
MS.gene053680.t1 MTR_5g066960 57.377 61 26 0 1 61 1 61 1.81e-21 80.5
MS.gene053680.t1 MTR_3g088615 53.521 71 32 1 1 70 1 71 2.05e-21 83.6
MS.gene053680.t1 MTR_5g046790 54.286 70 32 0 1 70 1 70 2.28e-21 84.3
MS.gene053680.t1 MTR_1g038300 54.930 71 31 1 1 70 1 71 3.18e-21 84.3
MS.gene053680.t1 MTR_5g021270 64.912 57 20 0 1 57 1 57 7.15e-21 83.6
MS.gene053680.t1 MTR_5g021270 64.912 57 20 0 1 57 1 57 7.20e-21 83.6
MS.gene053680.t1 MTR_4g093030 55.714 70 31 0 1 70 1 70 8.28e-21 81.6
MS.gene053680.t1 MTR_2g009890 57.143 70 29 1 1 70 1 69 8.46e-21 84.0
MS.gene053680.t1 MTR_5g032520 65.517 58 20 0 1 58 1 58 1.04e-20 82.8
MS.gene053680.t1 MTR_2g461710 58.621 58 24 0 1 58 1 58 1.06e-20 78.6
MS.gene053680.t1 MTR_5g032150 65.517 58 20 0 1 58 1 58 1.52e-20 82.4
MS.gene053680.t1 MTR_6g464720 52.857 70 33 0 1 70 1 70 2.45e-20 82.4
MS.gene053680.t1 MTR_3g113030 63.158 57 21 0 1 57 1 57 2.86e-20 81.6
MS.gene053680.t1 MTR_8g086290 53.521 71 32 1 2 72 12 81 3.46e-20 80.5
MS.gene053680.t1 MTR_1g108580 45.882 85 45 1 2 86 9 92 3.86e-20 81.6
MS.gene053680.t1 MTR_5g045560 45.652 92 48 2 1 92 8 97 7.98e-20 80.9
MS.gene053680.t1 MTR_2g085250 49.412 85 42 1 2 86 9 92 1.32e-19 80.1
MS.gene053680.t1 MTR_2g085280 49.412 85 42 1 2 86 9 92 1.35e-19 80.1
MS.gene053680.t1 MTR_4g036050 41.379 87 51 0 1 87 1 87 1.35e-19 79.0
MS.gene053680.t1 MTR_4g036050 41.379 87 51 0 1 87 1 87 1.69e-19 79.0
MS.gene053680.t1 MTR_5g031000 48.837 86 40 3 1 86 1 82 1.76e-19 79.7
MS.gene053680.t1 MTR_4g036050 41.379 87 51 0 1 87 1 87 1.82e-19 79.0
MS.gene053680.t1 MTR_5g031000 46.667 90 44 3 1 90 1 86 2.25e-19 79.7
MS.gene053680.t1 MTR_4g036050 41.379 87 51 0 1 87 1 87 2.38e-19 79.0
MS.gene053680.t1 MTR_1g029670 49.296 71 35 1 1 70 1 71 5.06e-19 77.4
MS.gene053680.t1 MTR_1g101970 60.345 58 23 0 1 58 1 58 5.96e-19 77.4
MS.gene053680.t1 MTR_8g043650 44.706 85 46 1 2 86 9 92 6.45e-19 78.6
MS.gene053680.t1 MTR_3g052920 52.632 76 34 2 2 76 9 83 6.48e-19 78.2
MS.gene053680.t1 MTR_5g066180 50.000 70 34 1 1 70 1 69 6.68e-19 78.2
MS.gene053680.t1 MTR_1g108510 51.389 72 34 1 2 73 9 79 6.95e-19 78.2
MS.gene053680.t1 MTR_3g030770 51.389 72 34 1 2 73 9 79 1.04e-18 77.8
MS.gene053680.t1 MTR_1g105910 43.529 85 47 1 2 86 9 92 1.21e-18 77.8
MS.gene053680.t1 MTR_1g054265 49.315 73 36 1 1 73 1 72 1.42e-18 76.3
MS.gene053680.t1 MTR_2g105290 52.113 71 33 1 1 71 11 80 1.53e-18 76.3
MS.gene053680.t1 MTR_1g041615 44.681 94 45 2 13 103 17 106 1.71e-18 75.1
MS.gene053680.t1 MTR_2g030740 44.706 85 46 1 2 86 9 92 2.05e-18 77.0
MS.gene053680.t1 MTR_3g052870 43.529 85 47 1 2 86 9 92 2.07e-18 76.6
MS.gene053680.t1 MTR_1g105920 43.529 85 47 1 2 86 9 92 2.38e-18 77.0
MS.gene053680.t1 MTR_1g106070 41.860 86 49 1 2 87 9 93 2.80e-18 75.5
MS.gene053680.t1 MTR_2g093190 44.706 85 46 1 2 86 9 92 3.65e-18 76.3
MS.gene053680.t1 MTR_3g030780 40.698 86 50 1 2 87 9 93 4.64e-18 73.9
MS.gene053680.t1 MTR_1g077360 51.316 76 35 2 2 76 9 83 4.77e-18 76.3
MS.gene053680.t1 MTR_7g028448 48.718 78 39 1 14 91 24 100 7.04e-18 74.3
MS.gene053680.t1 MTR_4g036915 48.718 78 39 1 14 91 24 100 7.04e-18 74.3
MS.gene053680.t1 MTR_4g131030 52.778 72 33 1 1 72 1 71 7.45e-18 75.1
MS.gene053680.t1 MTR_1g012570 49.296 71 35 1 2 72 9 78 7.98e-18 75.5
MS.gene053680.t1 MTR_8g051580 50.704 71 34 1 1 71 1 70 9.11e-18 74.3
MS.gene053680.t1 MTR_4g093970 57.627 59 25 0 1 59 27 85 1.32e-17 75.1
MS.gene053680.t1 MTR_5g055100 46.154 91 47 2 2 92 9 97 2.19e-17 74.3
MS.gene053680.t1 MTR_1g075600 43.750 96 51 2 2 97 9 101 2.48e-17 74.3
MS.gene053680.t1 MTR_0121s0100 42.353 85 48 1 2 86 9 92 2.53e-17 72.0
MS.gene053680.t1 MTR_1g047550 45.977 87 43 2 1 87 1 83 2.84e-17 72.8
MS.gene053680.t1 MTR_8g079502 49.296 71 35 1 1 71 1 70 3.39e-17 72.8
MS.gene053680.t1 MTR_3g080940 46.154 78 40 2 1 77 8 84 4.81e-17 72.8
MS.gene053680.t1 MTR_1g063160 47.945 73 37 1 1 73 1 72 8.43e-17 71.6
MS.gene053680.t1 MTR_0121s0080 41.176 85 49 1 2 86 9 92 2.48e-16 71.6
MS.gene053680.t1 MTR_5g053390 49.296 71 35 1 2 72 9 78 2.59e-16 71.6
MS.gene053680.t1 MTR_8g046350 45.570 79 39 2 1 79 1 75 2.51e-15 67.4
MS.gene053680.t1 MTR_4g094632 42.857 77 43 1 1 77 1 76 6.64e-14 63.9
MS.gene053680.t1 MTR_4g094638 37.615 109 60 4 1 104 1 106 7.19e-14 63.9
MS.gene053680.t1 MTR_4g127140 46.988 83 43 1 1 83 11 92 9.43e-14 63.9
MS.gene053680.t1 MTR_1g105905 45.161 62 33 1 11 72 1 61 2.41e-13 63.5
MS.gene053680.t1 MTR_6g018920 35.294 85 48 1 1 78 1 85 2.70e-13 64.3
MS.gene053680.t1 MTR_3g067875 49.123 57 28 1 11 67 1 56 2.37e-12 57.4
MS.gene053680.t1 MTR_7g062350 42.029 69 39 1 18 86 37 104 3.26e-12 60.8
MS.gene053680.t1 MTR_6g005440 37.662 77 41 1 1 70 1 77 3.43e-12 61.2
MS.gene053680.t1 MTR_1g114730 34.118 85 49 1 1 78 1 85 5.88e-12 60.5
MS.gene053680.t1 MTR_3g031240 39.241 79 47 1 1 78 1 79 1.42e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053680.t1 AT1G22130 83.505 97 16 0 1 97 1 97 6.77e-51 163
MS.gene053680.t1 AT1G77950 76.289 97 23 0 1 97 1 97 1.46e-50 160
MS.gene053680.t1 AT1G77950 76.289 97 23 0 1 97 1 97 1.46e-50 160
MS.gene053680.t1 AT1G77950 76.289 97 23 0 1 97 1 97 1.46e-50 160
MS.gene053680.t1 AT1G77950 76.289 97 23 0 1 97 1 97 1.46e-50 160
MS.gene053680.t1 AT1G77980 82.474 97 17 0 1 97 1 97 1.51e-50 162
MS.gene053680.t1 AT1G18750 62.025 79 29 1 1 78 1 79 4.89e-28 104
MS.gene053680.t1 AT1G18750 62.025 79 29 1 1 78 1 79 5.90e-28 104
MS.gene053680.t1 AT1G18750 62.025 79 29 1 1 78 1 79 9.42e-28 104
MS.gene053680.t1 AT4G09960 62.857 70 25 1 1 70 1 69 1.13e-24 93.2
MS.gene053680.t1 AT4G09960 62.857 70 25 1 1 70 1 69 1.37e-24 93.2
MS.gene053680.t1 AT4G09960 62.857 70 25 1 1 70 2 70 1.54e-24 93.2
MS.gene053680.t1 AT4G09960 62.857 70 25 1 1 70 11 79 2.21e-24 92.8
MS.gene053680.t1 AT4G11880 61.429 70 27 0 1 70 1 70 2.33e-24 91.3
MS.gene053680.t1 AT4G11880 61.429 70 27 0 1 70 1 70 2.33e-24 91.3
MS.gene053680.t1 AT3G58780 67.213 61 20 0 1 61 16 76 2.50e-24 92.8
MS.gene053680.t1 AT4G09960 62.857 70 25 1 1 70 27 95 3.17e-24 92.8
MS.gene053680.t1 AT4G18960 63.768 69 24 1 2 70 18 85 4.71e-24 92.0
MS.gene053680.t1 AT2G03060 55.696 79 34 1 1 78 1 79 4.94e-24 94.4
MS.gene053680.t1 AT2G03060 55.696 79 34 1 1 78 1 79 5.13e-24 94.0
MS.gene053680.t1 AT2G03060 55.696 79 34 1 1 78 1 79 5.13e-24 94.0
MS.gene053680.t1 AT2G03060 55.696 79 34 1 1 78 1 79 5.13e-24 94.0
MS.gene053680.t1 AT4G11880 61.429 70 27 0 1 70 1 70 7.41e-24 90.9
MS.gene053680.t1 AT4G11880 61.429 70 27 0 1 70 1 70 7.41e-24 90.9
MS.gene053680.t1 AT2G45650 62.857 70 25 1 1 70 1 69 8.10e-24 91.7
MS.gene053680.t1 AT4G09960 62.857 70 25 1 1 70 96 164 8.26e-24 92.8
MS.gene053680.t1 AT3G58780 60.000 70 27 1 1 70 16 84 8.82e-24 91.3
MS.gene053680.t1 AT2G45660 56.338 71 30 1 1 71 1 70 1.07e-23 89.0
MS.gene053680.t1 AT3G58780 60.000 70 27 1 1 70 22 90 1.09e-23 91.3
MS.gene053680.t1 AT2G42830 60.000 70 27 1 1 70 16 84 1.13e-23 91.3
MS.gene053680.t1 AT2G42830 60.000 70 27 1 1 70 16 84 1.15e-23 91.3
MS.gene053680.t1 AT1G69540 53.846 78 36 0 1 78 1 78 1.24e-23 92.8
MS.gene053680.t1 AT1G69540 53.846 78 36 0 1 78 1 78 1.51e-23 92.8
MS.gene053680.t1 AT3G58780 68.966 58 18 0 1 58 16 73 1.83e-23 91.3
MS.gene053680.t1 AT3G58780 60.000 70 27 1 1 70 16 84 2.57e-23 90.9
MS.gene053680.t1 AT2G45660 56.338 71 30 1 1 71 1 70 2.75e-23 89.4
MS.gene053680.t1 AT5G10140 60.000 70 28 0 1 70 1 70 3.72e-23 87.8
MS.gene053680.t1 AT4G22950 60.000 70 27 1 1 70 1 69 3.72e-23 88.2
MS.gene053680.t1 AT5G23260 56.471 85 31 2 1 79 1 85 4.61e-23 89.4
MS.gene053680.t1 AT5G10140 60.000 70 28 0 1 70 1 70 5.52e-23 87.8
MS.gene053680.t1 AT5G23260 56.471 85 31 2 1 79 17 101 5.88e-23 89.7
MS.gene053680.t1 AT5G10140 60.000 70 28 0 1 70 1 70 5.99e-23 87.8
MS.gene053680.t1 AT5G23260 56.471 85 31 2 1 79 1 85 6.14e-23 89.4
MS.gene053680.t1 AT5G10140 60.000 70 28 0 1 70 1 70 6.79e-23 87.8
MS.gene053680.t1 AT5G23260 56.471 85 31 2 1 79 17 101 6.88e-23 89.4
MS.gene053680.t1 AT3G57390 62.857 70 25 1 1 70 1 69 7.47e-23 88.6
MS.gene053680.t1 AT5G15800 58.571 70 29 0 1 70 1 70 7.78e-23 89.0
MS.gene053680.t1 AT1G24260 58.571 70 29 0 1 70 1 70 1.03e-22 88.6
MS.gene053680.t1 AT5G15800 58.571 70 29 0 1 70 1 70 1.09e-22 89.0
MS.gene053680.t1 AT3G57390 62.857 70 25 1 1 70 1 69 1.37e-22 88.6
MS.gene053680.t1 AT1G24260 58.571 70 29 0 1 70 1 70 1.42e-22 88.2
MS.gene053680.t1 AT1G24260 58.571 70 29 0 1 70 1 70 1.44e-22 88.2
MS.gene053680.t1 AT4G22950 60.000 70 27 1 1 70 1 69 1.48e-22 87.4
MS.gene053680.t1 AT4G22950 60.000 70 27 1 1 70 1 69 1.48e-22 87.4
MS.gene053680.t1 AT3G02310 57.143 70 30 0 1 70 1 70 1.59e-22 87.0
MS.gene053680.t1 AT3G57230 58.571 70 28 1 1 70 1 69 2.42e-22 85.1
MS.gene053680.t1 AT3G02310 57.143 70 30 0 1 70 1 70 2.56e-22 87.8
MS.gene053680.t1 AT5G62165 58.571 70 28 1 1 70 1 69 2.60e-22 84.0
MS.gene053680.t1 AT2G03710 68.421 57 18 0 1 57 1 57 2.82e-22 86.3
MS.gene053680.t1 AT5G62165 67.241 58 19 0 1 58 1 58 2.89e-22 85.5
MS.gene053680.t1 AT5G62165 67.241 58 19 0 1 58 1 58 2.89e-22 85.5
MS.gene053680.t1 AT5G62165 67.241 58 19 0 1 58 1 58 2.89e-22 85.5
MS.gene053680.t1 AT5G60910 55.714 70 31 0 1 70 1 70 3.22e-22 87.0
MS.gene053680.t1 AT5G65070 58.571 70 29 0 1 70 1 70 3.33e-22 84.7
MS.gene053680.t1 AT1G26310 57.143 70 30 0 1 70 1 70 4.39e-22 87.0
MS.gene053680.t1 AT4G37435 50.704 71 35 0 1 71 1 71 4.43e-22 85.5
MS.gene053680.t1 AT5G62165 67.241 58 19 0 1 58 1 58 4.81e-22 84.7
MS.gene053680.t1 AT5G62165 67.241 58 19 0 1 58 1 58 4.81e-22 84.7
MS.gene053680.t1 AT5G62165 67.241 58 19 0 1 58 1 58 4.81e-22 84.7
MS.gene053680.t1 AT5G62165 67.241 58 19 0 1 58 1 58 4.81e-22 84.7
MS.gene053680.t1 AT5G62165 67.241 58 19 0 1 58 1 58 4.81e-22 84.7
MS.gene053680.t1 AT5G13790 59.722 72 28 1 1 72 1 71 4.83e-22 87.4
MS.gene053680.t1 AT5G13790 59.722 72 28 1 1 72 1 71 5.34e-22 87.0
MS.gene053680.t1 AT5G51870 51.136 88 37 2 1 88 1 82 5.71e-22 85.1
MS.gene053680.t1 AT3G30260 54.286 70 32 0 1 70 1 70 5.75e-22 86.7
MS.gene053680.t1 AT5G65070 58.571 70 29 0 1 70 1 70 6.82e-22 85.5
MS.gene053680.t1 AT2G03710 62.319 69 22 1 1 65 1 69 7.08e-22 86.7
MS.gene053680.t1 AT2G03710 62.319 69 22 1 1 65 1 69 7.35e-22 86.7
MS.gene053680.t1 AT5G51870 51.136 88 37 2 1 88 1 82 7.64e-22 85.5
MS.gene053680.t1 AT1G69120 54.286 70 32 0 1 70 1 70 7.97e-22 85.9
MS.gene053680.t1 AT5G62165 58.571 70 28 1 1 70 1 69 1.43e-21 84.3
MS.gene053680.t1 AT5G62165 58.571 70 28 1 1 70 1 69 1.43e-21 84.3
MS.gene053680.t1 AT1G69120 54.286 70 32 0 1 70 1 70 1.47e-21 85.9
MS.gene053680.t1 AT5G62165 58.571 70 28 1 1 70 1 69 1.54e-21 84.7
MS.gene053680.t1 AT5G62165 58.571 70 28 1 1 70 1 69 1.54e-21 84.7
MS.gene053680.t1 AT5G62165 58.571 70 28 1 1 70 1 69 1.54e-21 84.7
MS.gene053680.t1 AT5G51870 51.136 88 37 2 1 88 24 105 1.56e-21 84.3
MS.gene053680.t1 AT3G57230 58.571 70 28 1 1 70 1 69 1.75e-21 85.1
MS.gene053680.t1 AT3G57230 58.571 70 28 1 1 70 1 69 1.75e-21 85.1
MS.gene053680.t1 AT5G65070 58.571 70 29 0 1 70 1 70 1.79e-21 84.7
MS.gene053680.t1 AT3G61120 52.500 80 37 1 1 80 1 79 1.90e-21 85.1
MS.gene053680.t1 AT5G65070 58.571 70 29 0 1 70 1 70 1.99e-21 85.1
MS.gene053680.t1 AT5G51870 58.571 70 28 1 1 70 1 69 2.07e-21 84.7
MS.gene053680.t1 AT3G54340 64.912 57 20 0 1 57 1 57 2.47e-21 84.7
MS.gene053680.t1 AT5G51870 58.571 70 28 1 1 70 11 79 2.72e-21 84.7
MS.gene053680.t1 AT4G24540 58.571 70 28 1 1 70 1 69 3.37e-21 84.0
MS.gene053680.t1 AT5G65070 58.442 77 28 2 1 73 1 77 1.78e-20 82.4
MS.gene053680.t1 AT1G71692 44.444 81 45 0 1 81 1 81 2.63e-20 81.6
MS.gene053680.t1 AT2G14210 51.429 70 34 0 1 70 1 70 3.23e-20 81.6
MS.gene053680.t1 AT2G14210 51.429 70 34 0 1 70 1 70 3.69e-20 81.6
MS.gene053680.t1 AT5G51860 46.154 104 53 3 1 104 1 101 4.37e-20 80.9
MS.gene053680.t1 AT5G51860 46.154 104 53 3 1 104 1 101 5.04e-20 80.9
MS.gene053680.t1 AT4G37940 54.286 70 31 1 1 70 1 69 1.40e-19 79.0
MS.gene053680.t1 AT2G22540 54.286 70 31 1 1 70 1 69 1.82e-19 80.1
MS.gene053680.t1 AT2G22540 54.286 70 31 1 1 70 1 69 1.82e-19 80.1
MS.gene053680.t1 AT5G65050 54.286 70 32 0 1 70 1 70 1.87e-19 78.6
MS.gene053680.t1 AT4G37940 54.286 70 31 1 1 70 1 69 2.47e-19 79.0
MS.gene053680.t1 AT4G37940 54.286 70 31 1 1 70 1 69 2.61e-19 79.3
MS.gene053680.t1 AT5G20240 62.963 54 20 0 1 54 1 54 2.94e-19 77.4
MS.gene053680.t1 AT5G65050 54.286 70 32 0 1 70 1 70 3.45e-19 78.2
MS.gene053680.t1 AT5G65050 54.286 70 32 0 1 70 1 70 4.12e-19 78.2
MS.gene053680.t1 AT5G65050 54.286 70 32 0 1 70 1 70 4.13e-19 77.8
MS.gene053680.t1 AT5G20240 62.963 54 20 0 1 54 1 54 9.39e-19 77.4
MS.gene053680.t1 AT2G22540 62.963 54 20 0 1 54 1 54 2.25e-18 77.0
MS.gene053680.t1 AT2G22630 58.621 58 24 0 1 58 1 58 5.92e-18 75.9
MS.gene053680.t1 AT2G22630 58.621 58 24 0 1 58 1 58 5.92e-18 75.9
MS.gene053680.t1 AT5G65060 52.857 70 33 0 1 70 1 70 6.88e-18 74.7
MS.gene053680.t1 AT5G65060 52.857 70 33 0 1 70 1 70 7.89e-18 74.7
MS.gene053680.t1 AT5G65060 52.857 70 33 0 1 70 1 70 1.01e-17 74.3
MS.gene053680.t1 AT1G31140 43.956 91 50 1 8 97 8 98 2.00e-17 74.3
MS.gene053680.t1 AT5G65080 50.000 70 35 0 1 70 8 77 2.32e-17 73.6
MS.gene053680.t1 AT1G31140 56.250 64 27 1 8 70 8 71 2.47e-17 73.9
MS.gene053680.t1 AT2G26320 46.250 80 42 1 1 79 17 96 6.06e-17 70.5
MS.gene053680.t1 AT5G60440 43.902 82 42 2 2 80 7 87 6.75e-17 73.9
MS.gene053680.t1 AT5G65080 43.182 88 41 1 1 79 8 95 2.69e-16 70.9
MS.gene053680.t1 AT3G66656 43.056 72 40 1 1 72 1 71 1.37e-15 68.6
MS.gene053680.t1 AT1G01530 41.237 97 48 2 1 94 6 96 1.38e-15 69.7
MS.gene053680.t1 AT2G24840 47.222 72 37 1 1 72 62 132 2.56e-15 69.3
MS.gene053680.t1 AT1G77080 55.714 70 31 0 1 70 1 70 2.70e-15 67.8
MS.gene053680.t1 AT1G77080 55.714 70 31 0 1 70 1 70 2.80e-15 67.8
MS.gene053680.t1 AT1G77080 55.714 70 31 0 1 70 1 70 4.45e-15 67.8
MS.gene053680.t1 AT4G36590 47.887 71 36 1 2 72 7 76 9.73e-15 67.4
MS.gene053680.t1 AT1G77080 55.714 70 31 0 1 70 1 70 9.85e-15 67.0
MS.gene053680.t1 AT1G47760 47.222 72 37 1 1 72 1 71 1.20e-14 66.2
MS.gene053680.t1 AT1G77080 77.500 40 9 0 1 40 1 40 1.25e-14 65.5
MS.gene053680.t1 AT2G34440 40.845 71 41 1 1 71 1 70 2.55e-14 65.1
MS.gene053680.t1 AT1G77080 77.500 40 9 0 1 40 1 40 2.82e-14 65.5
MS.gene053680.t1 AT1G72350 48.571 70 33 1 2 71 43 109 3.60e-14 65.9
MS.gene053680.t1 AT1G65360 44.286 70 38 1 1 70 6 74 1.10e-13 64.3
MS.gene053680.t1 AT1G28460 43.662 71 39 1 2 72 8 77 7.58e-12 58.9
MS.gene053680.t1 AT3G04100 40.351 57 34 0 2 58 14 70 2.36e-11 58.2

Find 14 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATACTTATCTCTTTCT+TGG 0.254516 5.1:+47511349 None:intergenic
TACTTATCTCTTTCTTGGTC+AGG 0.394970 5.1:+47511354 None:intergenic
AAATGACTAAGACGATTTGA+TGG 0.423614 5.1:+47512262 None:intergenic
ATCGATTATCAACATGGGTC+GGG 0.504254 5.1:-47512422 None:intergenic
TACCTGCGGTAGGGTGGCTC+AGG 0.504256 5.1:+47511209 None:intergenic
GAATAGAGAACACAACGAAT+CGG 0.519281 5.1:-47512381 MS.gene053680:CDS
TTCCTGAGCCACCCTACCGC+AGG 0.550290 5.1:-47511211 MS.gene053680:intron
AATCGATTATCAACATGGGT+CGG 0.551705 5.1:-47512423 None:intergenic
TATAAGAGTATACCTGCGGT+AGG 0.569331 5.1:+47511199 None:intergenic
CTGCAGGGGTATTCAGAACA+AGG 0.579109 5.1:-47511038 MS.gene053680:intron
AGAGTATACCTGCGGTAGGG+TGG 0.613436 5.1:+47511203 None:intergenic
ATAAGAGTATACCTGCGGTA+GGG 0.617039 5.1:+47511200 None:intergenic
GAGCAATATCAATATCACAA+AGG 0.664332 5.1:+47512299 None:intergenic
CAGGGGTATTCAGAACAAGG+AGG 0.754517 5.1:-47511035 MS.gene053680:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTATTTTATATT+TGG - chr5.1:47511531-47511550 MS.gene053680:intron 0.0%
!! AATAATAACAATATCATTAT+GGG + chr5.1:47511632-47511651 None:intergenic 10.0%
!!! AATATTTTTGTAAATTTCAA+GGG + chr5.1:47512113-47512132 None:intergenic 10.0%
!!! TAATTTTCTTTCTTAAAATA+AGG - chr5.1:47511263-47511282 MS.gene053680:intron 10.0%
!! ATTTAAAAAAAATTGAAAGG+TGG - chr5.1:47512228-47512247 MS.gene053680:intron 15.0%
!! CAATAATAACAATATCATTA+TGG + chr5.1:47511633-47511652 None:intergenic 15.0%
!! TTAATAATATATAGCTTGAA+AGG + chr5.1:47512161-47512180 None:intergenic 15.0%
!!! AATATTTACTTTTGTTCTTT+TGG + chr5.1:47511218-47511237 None:intergenic 15.0%
!!! AGTCTTTTTTTTTTTTTTAG+AGG - chr5.1:47511554-47511573 MS.gene053680:intron 15.0%
!!! GAATATTTTTGTAAATTTCA+AGG + chr5.1:47512114-47512133 None:intergenic 15.0%
!!! TTTTGGTAGAAATATTTTAA+TGG - chr5.1:47511470-47511489 MS.gene053680:intron 15.0%
!!! TTTTTTTTTAGAGGAATATT+TGG - chr5.1:47511563-47511582 MS.gene053680:intron 15.0%
!! ATAAATAAACTACCAACAAT+TGG - chr5.1:47512195-47512214 MS.gene053680:intron 20.0%
!! GAAACAAATTATATATGAAG+AGG + chr5.1:47510843-47510862 None:intergenic 20.0%
!! TATAATTGATGAGTATATAC+TGG - chr5.1:47511591-47511610 MS.gene053680:intron 20.0%
!!! ATAAACTGATTTTAACCTTT+CGG - chr5.1:47511397-47511416 MS.gene053680:intron 20.0%
!!! CATGCAATTTTTTTTTTTCA+TGG - chr5.1:47511293-47511312 MS.gene053680:intron 20.0%
!!! TGGTAGAATTTCAAATATTT+TGG - chr5.1:47511453-47511472 MS.gene053680:intron 20.0%
!!! TTGTTATTATTGTGATAATC+AGG - chr5.1:47511641-47511660 MS.gene053680:intron 20.0%
!!! TTTTTATTCATATATCTGCA+GGG - chr5.1:47511998-47512017 MS.gene053680:intron 20.0%
! AACCAATTTATTGTGAAAAC+AGG + chr5.1:47511905-47511924 None:intergenic 25.0%
! ACCAATTTATTGTGAAAACA+GGG + chr5.1:47511904-47511923 None:intergenic 25.0%
! ACTCTTATATTATCTTCGAT+CGG - chr5.1:47511866-47511885 MS.gene053680:intron 25.0%
! ATCAGTTTATAACCTTCATT+TGG + chr5.1:47511387-47511406 None:intergenic 25.0%
! GAAACTAGTATATTTGAAGA+AGG + chr5.1:47511504-47511523 None:intergenic 25.0%
! TAAACAATTGAGTTATAGTG+TGG - chr5.1:47511354-47511373 MS.gene053680:intron 25.0%
! TCAAAACTTCTAAACACATT+TGG - chr5.1:47511766-47511785 MS.gene053680:intron 25.0%
!! ATAATATAAGAGTATACCTG+CGG + chr5.1:47511859-47511878 None:intergenic 25.0%
!! CAAATAACTTCATTTTGTGT+TGG - chr5.1:47511729-47511748 MS.gene053680:intron 25.0%
!! CTCTGAATTTTGTATGTTTA+TGG - chr5.1:47511421-47511440 MS.gene053680:intron 25.0%
!! CTTTTTATTCATATATCTGC+AGG - chr5.1:47511997-47512016 MS.gene053680:intron 25.0%
!! GTATTTTACAGTATTTTCTC+AGG - chr5.1:47512386-47512405 MS.gene053680:CDS 25.0%
!! TATGTTTATGGACTTTTCTT+TGG - chr5.1:47511433-47511452 MS.gene053680:intron 25.0%
!! TTTTATTCATATATCTGCAG+GGG - chr5.1:47511999-47512018 MS.gene053680:intron 25.0%
!!! AAATCGTCTTAGTCATTTTT+CGG - chr5.1:47510794-47510813 MS.gene053680:intron 25.0%
!!! CATTTTGTGTTGGTTATAAA+TGG - chr5.1:47511739-47511758 MS.gene053680:intron 25.0%
AAATGACTAAGACGATTTGA+TGG + chr5.1:47510792-47510811 None:intergenic 30.0%
AATATTTGATAGAGCTAGCT+TGG + chr5.1:47512136-47512155 None:intergenic 30.0%
GAACATACTTATCTCTTTCT+TGG + chr5.1:47511705-47511724 None:intergenic 30.0%
GAGCAATATCAATATCACAA+AGG + chr5.1:47510755-47510774 None:intergenic 30.0%
! ACACACACAAAAAGCATAAT+TGG + chr5.1:47511083-47511102 None:intergenic 30.0%
! GTAATAATTTGTGACTCGTA+AGG - chr5.1:47511038-47511057 MS.gene053680:intron 30.0%
! TAATTTTCAAAAGCCAGCAA+TGG + chr5.1:47511168-47511187 None:intergenic 30.0%
! TCCCTGTTTTCACAATAAAT+TGG - chr5.1:47511900-47511919 MS.gene053680:intron 30.0%
! TTTCTTGTGCAAATTTTGTG+TGG - chr5.1:47510859-47510878 MS.gene053680:intron 30.0%
!! TTTGTGTTGGTTATAAATGG+TGG - chr5.1:47511742-47511761 MS.gene053680:intron 30.0%
!!! AATCGTCTTAGTCATTTTTC+GGG - chr5.1:47510795-47510814 MS.gene053680:intron 30.0%
!!! ATTTTTTCTGCTCCAATTGT+TGG + chr5.1:47512210-47512229 None:intergenic 30.0%
!!! TGTGTTCTTTTTTGTCCTAT+GGG - chr5.1:47511098-47511117 MS.gene053680:intron 30.0%
AAATATTCCACCGTAACAAC+TGG + chr5.1:47511136-47511155 None:intergenic 35.0%
GAATAGAGAACACAACGAAT+CGG - chr5.1:47510670-47510689 MS.gene053680:intron 35.0%
TACAAAATTCAGAGTCCGAA+AGG + chr5.1:47511415-47511434 None:intergenic 35.0%
TACTTATCTCTTTCTTGGTC+AGG + chr5.1:47511700-47511719 None:intergenic 35.0%
TATGCCTCTTCTCTTCTTAA+TGG - chr5.1:47510916-47510935 MS.gene053680:intron 35.0%
TCAACCATTAAGAAGAGAAG+AGG + chr5.1:47510923-47510942 None:intergenic 35.0%
TGTGAAAACAGGGAAAACAA+AGG + chr5.1:47511894-47511913 None:intergenic 35.0%
! ACGTTTTCAAAGCGTAGAAA+TGG - chr5.1:47510699-47510718 MS.gene053680:intron 35.0%
!!! ATCGTCTTAGTCATTTTTCG+GGG - chr5.1:47510796-47510815 MS.gene053680:intron 35.0%
!!! GTGTGTTCTTTTTTGTCCTA+TGG - chr5.1:47511097-47511116 MS.gene053680:intron 35.0%
!!! TCTTTTTTGTCCTATGGGTT+AGG - chr5.1:47511103-47511122 MS.gene053680:intron 35.0%
AAAAGCCAGCAATGGTTTCA+AGG + chr5.1:47511160-47511179 None:intergenic 40.0%
AAAGCCAGCAATGGTTTCAA+GGG + chr5.1:47511159-47511178 None:intergenic 40.0%
AGGATCTTGACCAGTTGTTA+CGG - chr5.1:47511123-47511142 MS.gene053680:intron 40.0%
ATTTCCCTTGAAACCATTGC+TGG - chr5.1:47511152-47511171 MS.gene053680:intron 40.0%
! ATAAGAGTATACCTGCGGTA+GGG + chr5.1:47511854-47511873 None:intergenic 40.0%
! TATAAGAGTATACCTGCGGT+AGG + chr5.1:47511855-47511874 None:intergenic 40.0%
! TGTGGTGTTAGTCCAAATGA+AGG - chr5.1:47511372-47511391 MS.gene053680:CDS 40.0%
!!! GTCATTTTTCGGGGAAAAGA+AGG - chr5.1:47510805-47510824 MS.gene053680:intron 40.0%
ATCTTGACCAGTTGTTACGG+TGG - chr5.1:47511126-47511145 MS.gene053680:intron 45.0%
TGGTCAAGATCCTAACCCAT+AGG + chr5.1:47511116-47511135 None:intergenic 45.0%
!! AAAATAAAATAAAATAAAGA+AGG + chr5.1:47511526-47511545 None:intergenic 5.0%
!! AAAATTTAAAAAAAATTGAA+AGG - chr5.1:47512225-47512244 MS.gene053680:intron 5.0%
!! CAGGGGTATTCAGAACAAGG+AGG - chr5.1:47512016-47512035 MS.gene053680:intron 50.0%
!! CTGCAGGGGTATTCAGAACA+AGG - chr5.1:47512013-47512032 MS.gene053680:intron 50.0%
AGAGTATACCTGCGGTAGGG+TGG + chr5.1:47511851-47511870 None:intergenic 55.0%
TACCTGCGGTAGGGTGGCTC+AGG + chr5.1:47511845-47511864 None:intergenic 65.0%
TTCCTGAGCCACCCTACCGC+AGG - chr5.1:47511840-47511859 MS.gene053680:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 47510642 47512431 47510642 ID=MS.gene053680
chr5.1 mRNA 47510642 47512431 47510642 ID=MS.gene053680.t1;Parent=MS.gene053680
chr5.1 exon 47512247 47512431 47512247 ID=MS.gene053680.t1.exon1;Parent=MS.gene053680.t1
chr5.1 CDS 47512247 47512431 47512247 ID=cds.MS.gene053680.t1;Parent=MS.gene053680.t1
chr5.1 exon 47511357 47511410 47511357 ID=MS.gene053680.t1.exon2;Parent=MS.gene053680.t1
chr5.1 CDS 47511357 47511410 47511357 ID=cds.MS.gene053680.t1;Parent=MS.gene053680.t1
chr5.1 exon 47511212 47511244 47511212 ID=MS.gene053680.t1.exon3;Parent=MS.gene053680.t1
chr5.1 CDS 47511212 47511244 47511212 ID=cds.MS.gene053680.t1;Parent=MS.gene053680.t1
chr5.1 exon 47511036 47511054 47511036 ID=MS.gene053680.t1.exon4;Parent=MS.gene053680.t1
chr5.1 CDS 47511036 47511054 47511036 ID=cds.MS.gene053680.t1;Parent=MS.gene053680.t1
chr5.1 exon 47510642 47510665 47510642 ID=MS.gene053680.t1.exon5;Parent=MS.gene053680.t1
chr5.1 CDS 47510642 47510665 47510642 ID=cds.MS.gene053680.t1;Parent=MS.gene053680.t1
Gene Sequence

>MS.gene053680

ATGGGTCGGGTTAAACTTGAAATAAAAAGAATAGAGAACACAACGAATCGGCAAGTTACGTTTTCAAAGCGTAGAAATGGTCTCATCAAAAAAGCTTATGAGTTATCAATCCTTTGTGATATTGATATTGCTCTTATAATGTTTTCTCCATCAAATCGTCTTAGTCATTTTTCGGGGAAAAGAAGGTACGTTTTGCATCCTCTTCATATATAATTTGTTTCTTGTGCAAATTTTGTGTGGTTTTATGTAATTTAGTATTAATCAAACAATTTAATATGCCTCTTCTCTTCTTAATGGTTGATTGCATTTGATAGATTTTGTGAAAATTAAGATGATTTATTTCTTCTACATGTTCAAAGTTAAGATTACAAATTGTGATTTGTTTATGCTTTAGATGTAATAATTTGTGACTCGTAAGGTAGTAATTGTTTTTGTTAGCCAATTATGCTTTTTGTGTGTGTTCTTTTTTGTCCTATGGGTTAGGATCTTGACCAGTTGTTACGGTGGAATATTTCCCTTGAAACCATTGCTGGCTTTTGAAAATTATAGCAAAGCAGCATCTTATGATTTTGACCAAAAGAACAAAAGTAAATATTTTTGAAGTAATGAATAACAAAATAATAATTTTCTTTCTTAAAATAAGGAAATGCTCATGCAATTTTTTTTTTTCATGGTGTTCATGTAAAACTTGAAAGTTACACATCAGAAAATGTAAACAATTGAGTTATAGTGTGGTGTTAGTCCAAATGAAGGTTATAAACTGATTTTAACCTTTCGGACTCTGAATTTTGTATGTTTATGGACTTTTCTTTGGTAGAATTTCAAATATTTTGGTAGAAATATTTTAATGGATTTTATTCCTTCTTCAAATATACTAGTTTCCTTCTTTATTTTATTTTATTTTATATTTGGAGTCTTTTTTTTTTTTTTAGAGGAATATTTGGAGTCTTATAATTGATGAGTATATACTGGTTATTATTTATAATGCCCATAATGATATTGTTATTATTGTGATAATCAGGATAGAAGATGTTTTAAGTCGTTACATTAATCTTCCTGACCAAGAAAGAGATAAGTATGTTCTCAACAAATAACTTCATTTTGTGTTGGTTATAAATGGTGGTTCAAAACTTCTAAACACATTTGGCTTTTTAATTTCATTATTTATAGTAATTTGTTTCTTGCAGTGCTGTAAGTTTTCCTGAGCCACCCTACCGCAGGTATACTCTTATATTATCTTCGATCGGTTCCTTTGTTTTCCCTGTTTTCACAATAAATTGGTTATTATAGAATTTAATTAATTTTTCTTTTTTGATAAAAAATTACTTAATATTTGTTCTTTTAATACTAATTTACTTTTTATTCATATATCTGCAGGGGTATTCAGAACAAGGAGGTGATTTCACTAACTATATCTATATATAAAAAAATTAATAGACATTTCTTTAAAAATTGAGAATTCATTAATCCCTTGAAATTTACAAAAATATTCCAAGCTAGCTCTATCAAATATTGTCCTTTCAAGCTATATATTATTAATAAATTCTAGAAAAATAAATAAACTACCAACAATTGGAGCAGAAAAAATTTAAAAAAAATTGAAAGGTGGAGCAGAATAAATAAGCTAATCTCTAATTTTCTCATCTCTAACATTTACATAGTAGAAGTGTAGAATATTTTCTATAACTAGTATTTGTCATGTAATTTTTTTTCATATGAATACTTTATAATTTTAGTTTATTTTGTATTTTACAGTATTTTCTCAGGATTCTTCAGCAGTTGAGAAGTGA
Protein sequence

>MS.gene053680.t1

MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFSGKRRIEDVLSRYINLPDQERDNAVSFPEPPYRRGIQNKEDSSAVEK