AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053703

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053703.t1 MTR_5g060950 96.927 358 11 0 16 373 1 358 0.0 725
MS.gene053703.t1 MTR_3g073560 66.379 348 111 3 16 361 1 344 9.76e-159 459
MS.gene053703.t1 MTR_3g087940 49.587 363 172 3 4 361 2 358 9.94e-118 346
MS.gene053703.t1 MTR_8g091650 46.839 348 178 4 14 361 13 353 1.12e-98 297
MS.gene053703.t1 MTR_8g091650 43.045 381 180 4 14 361 13 389 6.17e-94 286
MS.gene053703.t1 MTR_8g091650 51.986 277 132 1 85 361 5 280 1.66e-92 279
MS.gene053703.t1 MTR_8g040120 52.265 287 126 2 82 361 181 463 9.02e-92 283
MS.gene053703.t1 MTR_7g089800 51.568 287 128 3 82 361 138 420 2.85e-91 280
MS.gene053703.t1 MTR_7g089800 51.568 287 128 3 82 361 167 449 5.40e-91 281
MS.gene053703.t1 MTR_2g086420 52.143 280 127 2 82 361 193 465 1.08e-90 281
MS.gene053703.t1 MTR_2g086420 52.143 280 127 2 82 361 194 466 1.21e-90 281
MS.gene053703.t1 MTR_7g092750 47.351 302 148 3 69 361 60 359 2.10e-90 276
MS.gene053703.t1 MTR_7g092750 47.351 302 148 3 69 361 161 460 3.92e-89 276
MS.gene053703.t1 MTR_4g053250 44.118 340 163 5 22 361 146 458 4.46e-86 269
MS.gene053703.t1 MTR_5g054900 45.638 298 151 2 71 361 57 350 9.78e-82 253
MS.gene053703.t1 MTR_5g054900 45.638 298 151 2 71 361 138 431 7.03e-81 254
MS.gene053703.t1 MTR_5g054900 44.966 298 149 3 71 361 57 346 6.47e-78 244
MS.gene053703.t1 MTR_5g054900 44.966 298 149 3 71 361 168 457 7.62e-77 244
MS.gene053703.t1 MTR_7g092750 43.377 302 134 4 69 361 161 434 3.21e-76 242
MS.gene053703.t1 MTR_1g111310 47.059 289 147 3 77 360 416 703 1.21e-75 248
MS.gene053703.t1 MTR_1g111310 45.614 285 145 2 77 358 49 326 1.75e-68 228
MS.gene053703.t1 MTR_0126s0080 40.118 339 177 6 4 317 122 459 4.81e-67 219
MS.gene053703.t1 MTR_3g044820 43.787 169 88 3 77 238 40 208 1.10e-42 148
MS.gene053703.t1 MTR_1g090370 31.000 200 115 5 163 357 47 228 2.23e-15 75.1
MS.gene053703.t1 MTR_1g111320 64.000 50 18 0 82 131 146 195 1.41e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053703.t1 AT1G77920 52.520 377 149 6 1 361 1 363 5.26e-123 359
MS.gene053703.t1 AT1G22070 51.075 372 157 4 14 365 17 383 1.44e-119 351
MS.gene053703.t1 AT5G10030 50.139 361 174 3 4 361 2 359 1.12e-115 341
MS.gene053703.t1 AT5G10030 50.139 361 174 3 4 361 2 359 1.12e-115 341
MS.gene053703.t1 AT5G10030 50.139 361 174 3 4 361 2 359 1.12e-115 341
MS.gene053703.t1 AT5G10030 50.139 361 174 3 4 361 2 359 1.12e-115 341
MS.gene053703.t1 AT5G10030 50.139 361 174 3 4 361 2 359 1.12e-115 341
MS.gene053703.t1 AT5G65210 49.189 370 181 4 4 369 2 368 1.19e-115 341
MS.gene053703.t1 AT5G65210 49.189 370 181 4 4 369 2 368 1.19e-115 341
MS.gene053703.t1 AT5G65210 49.189 370 181 4 4 369 2 368 1.19e-115 341
MS.gene053703.t1 AT5G65210 49.189 370 181 4 4 369 2 368 1.19e-115 341
MS.gene053703.t1 AT5G65210 49.189 370 181 4 4 369 2 368 1.19e-115 341
MS.gene053703.t1 AT5G65210 49.189 370 181 4 4 369 2 368 1.19e-115 341
MS.gene053703.t1 AT5G65210 53.846 299 134 2 72 369 3 298 1.27e-105 313
MS.gene053703.t1 AT1G08320 48.012 327 151 6 46 361 8 326 9.47e-94 285
MS.gene053703.t1 AT1G08320 48.012 327 151 6 46 361 8 326 9.47e-94 285
MS.gene053703.t1 AT1G08320 48.012 327 151 6 46 361 132 450 4.09e-92 285
MS.gene053703.t1 AT1G08320 48.012 327 151 6 46 361 132 450 4.09e-92 285
MS.gene053703.t1 AT1G08320 48.012 327 151 6 46 361 132 450 4.09e-92 285
MS.gene053703.t1 AT5G06839 47.869 305 144 2 72 361 108 412 5.82e-88 272
MS.gene053703.t1 AT5G06839 47.869 305 144 2 72 361 151 455 1.03e-87 272
MS.gene053703.t1 AT5G06950 49.301 286 135 2 82 361 46 327 1.41e-87 268
MS.gene053703.t1 AT5G06950 49.301 286 135 2 82 361 46 327 1.41e-87 268
MS.gene053703.t1 AT5G06950 49.301 286 135 2 82 361 46 327 1.41e-87 268
MS.gene053703.t1 AT5G06950 49.301 286 135 2 82 361 46 327 1.41e-87 268
MS.gene053703.t1 AT5G06950 49.301 286 135 2 82 361 46 327 1.41e-87 268
MS.gene053703.t1 AT5G06839 47.059 306 146 2 72 361 108 413 7.48e-87 269
MS.gene053703.t1 AT3G12250 49.301 286 135 2 82 361 19 300 1.58e-86 264
MS.gene053703.t1 AT3G12250 49.301 286 135 2 82 361 46 327 1.92e-86 265
MS.gene053703.t1 AT3G12250 49.301 286 135 2 82 361 46 327 1.92e-86 265
MS.gene053703.t1 AT3G12250 49.301 286 135 2 82 361 46 327 1.92e-86 265
MS.gene053703.t1 AT3G12250 49.301 286 135 2 82 361 46 327 1.92e-86 265
MS.gene053703.t1 AT3G12250 49.301 286 135 2 82 361 40 321 2.18e-86 265
MS.gene053703.t1 AT3G12250 49.301 286 135 2 82 361 71 352 1.40e-85 263
MS.gene053703.t1 AT5G06960 48.951 286 136 2 82 361 46 327 2.01e-85 262
MS.gene053703.t1 AT5G06960 48.951 286 136 2 82 361 46 327 2.01e-85 262
MS.gene053703.t1 AT5G06960 48.951 286 136 2 82 361 26 307 2.08e-85 261
MS.gene053703.t1 AT1G68640 45.638 298 150 3 72 361 156 449 7.50e-75 239
MS.gene053703.t1 AT1G58330 28.866 194 115 6 178 354 36 223 4.59e-12 65.5

Find 66 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTGGATGTCGGTTATA+TGG 0.184139 5.1:-46800634 MS.gene053703:CDS
TCCATACACCAGATATTAAA+TGG 0.211492 5.1:+46800322 None:intergenic
TCTTTGTTTGAAATTGAATA+TGG 0.229069 5.1:-46800504 MS.gene053703:CDS
CAAGCTGATCCCTTGGATTT+CGG 0.267505 5.1:-46799925 MS.gene053703:CDS
TTTATACAGAAACAGTTTAT+TGG 0.277561 5.1:-46800649 MS.gene053703:CDS
TGCTCAAGGCTTGTTGGCTA+TGG 0.316587 5.1:-46799593 MS.gene053703:CDS
ATCCTCCGATCCAAAGAAAA+AGG 0.331172 5.1:+46800283 None:intergenic
TCCATTTAATATCTGGTGTA+TGG 0.348140 5.1:-46800323 MS.gene053703:CDS
TTATGTTCATCTTCAACATT+GGG 0.356119 5.1:+46801556 None:intergenic
TCATTCAAATTCTCAAGTTT+CGG 0.363992 5.1:+46800054 None:intergenic
GCTGAAGATGCACTGTCAAT+AGG 0.369583 5.1:-46799985 MS.gene053703:CDS
CTTATGTTCATCTTCAACAT+TGG 0.379233 5.1:+46801555 None:intergenic
GCTCAAGGCTTGTTGGCTAT+GGG 0.379556 5.1:-46799592 MS.gene053703:CDS
CTAACCTGAGTTTATTGTTC+CGG 0.383626 5.1:+46800605 None:intergenic
CTCAACTAATCGCGCCGAAA+AGG 0.387136 5.1:-46801665 MS.gene053703:CDS
TTCTGAAAAGATTTGAGTAT+TGG 0.389399 5.1:+46800376 None:intergenic
TCAAGCTGCTCAAGGCTTGT+TGG 0.395796 5.1:-46799599 MS.gene053703:CDS
ACAGGCTTATGTTCAACAAC+TGG 0.406023 5.1:-46800834 MS.gene053703:intron
CTTTCAGATGGCTGCTGCCA+TGG 0.412683 5.1:-46799893 MS.gene053703:CDS
TATCGAGAAAACAAGAAAAC+AGG 0.417815 5.1:-46800774 MS.gene053703:intron
CTTTGCAGGCAGATCACCTT+AGG 0.420677 5.1:-46799663 MS.gene053703:intron
TTATTGGATGTCGGTTATAT+GGG 0.423086 5.1:-46800633 MS.gene053703:CDS
CCTCCCACATAGTCACTTGA+AGG 0.428980 5.1:+46801622 None:intergenic
AAGGTTCTCTTGATTCTTGA+GGG 0.435161 5.1:+46801407 None:intergenic
CCCTTGGATTTCGGAAACTA+CGG 0.436857 5.1:-46799916 MS.gene053703:CDS
CAAGAATCAAGAGAACCTTC+TGG 0.437311 5.1:-46801403 MS.gene053703:CDS
TACTGCTTCTCCTTTGTCCA+TGG 0.443791 5.1:+46799876 None:intergenic
CTGAAGATGCACTGTCAATA+GGG 0.444666 5.1:-46799984 MS.gene053703:CDS
GACAAAGGAGAAGCAGTAGA+AGG 0.456711 5.1:-46799871 MS.gene053703:CDS
AGTGTTGAGTAGGGTAGAAA+TGG 0.460652 5.1:+46799512 None:intergenic
CAACATTCAAGCTGATCCCT+TGG 0.462368 5.1:-46799932 MS.gene053703:CDS
TCTTAATTTGAGTGTTGAGT+AGG 0.465347 5.1:+46799502 None:intergenic
GTCGGTTATATGGGAACGTC+CGG 0.469360 5.1:-46800624 MS.gene053703:CDS
GAAGGTTCTCTTGATTCTTG+AGG 0.474792 5.1:+46801406 None:intergenic
TGTTGTTGATCATACTCTGC+TGG 0.478454 5.1:+46799950 None:intergenic
CTCAAGGCTTGTTGGCTATG+GGG 0.490238 5.1:-46799591 MS.gene053703:CDS
CTTAATTTGAGTGTTGAGTA+GGG 0.496496 5.1:+46799503 None:intergenic
ATGTCACGCATATTATCAAT+TGG 0.498986 5.1:-46799622 MS.gene053703:CDS
CATAAGTAGCATGGAGAACA+AGG 0.509417 5.1:-46801538 MS.gene053703:intron
CACATAGTCACTTGAAGGAA+TGG 0.522645 5.1:+46801627 None:intergenic
CATTCCTTCAAGTGACTATG+TGG 0.523116 5.1:-46801626 MS.gene053703:CDS
TCAAGGCTTGTTGGCTATGG+GGG 0.523504 5.1:-46799590 MS.gene053703:CDS
AGATGCACTGTCAATAGGGT+TGG 0.527361 5.1:-46799980 MS.gene053703:CDS
ATAACAGAGTTTGTTGCCTA+AGG 0.529419 5.1:+46799647 None:intergenic
TTGAAATTGAATATGGACGT+TGG 0.536052 5.1:-46800497 MS.gene053703:CDS
TCAATTGGTCAAGCTGCTCA+AGG 0.536456 5.1:-46799607 MS.gene053703:CDS
TTCGCACTCTTAGTTCATTG+TGG 0.540430 5.1:-46799552 MS.gene053703:CDS
TATTCAAGAACCTGTTCCTA+AGG 0.542554 5.1:-46801365 MS.gene053703:intron
TAGATTGAAGCTCATGCAGT+TGG 0.542577 5.1:-46800804 MS.gene053703:CDS
CGGAAACTACGGCTTTCAGA+TGG 0.543160 5.1:-46799905 MS.gene053703:CDS
TATACATTTAGAATTTGTGA+TGG 0.550755 5.1:+46800255 None:intergenic
AATGAAAGCAGAAGCTGCAA+AGG 0.552723 5.1:-46800355 MS.gene053703:CDS
AGAAACAGTTTATTGGATGT+CGG 0.555658 5.1:-46800642 MS.gene053703:CDS
GCCGTAGTTTCCGAAATCCA+AGG 0.586415 5.1:+46799915 None:intergenic
GAAGATGAACATAAGTAGCA+TGG 0.592197 5.1:-46801547 MS.gene053703:CDS
GCGCGGCTGCTCGAAAATGT+CGG 0.599361 5.1:-46800938 MS.gene053703:CDS
ATGGCTGCTGCCATGGACAA+AGG 0.602885 5.1:-46799886 MS.gene053703:CDS
GTCTCTTGATCATCTCCAGA+AGG 0.603267 5.1:+46801388 None:intergenic
ATCTGGTGTATGGAAATCAC+CGG 0.603625 5.1:-46800313 MS.gene053703:CDS
CCGTAGTTTCCGAAATCCAA+GGG 0.636532 5.1:+46799916 None:intergenic
CCTTCAAGTGACTATGTGGG+AGG 0.650193 5.1:-46801622 MS.gene053703:CDS
CTTGCTGAGATGATAAATGC+AGG 0.655037 5.1:+46800007 None:intergenic
ATTCCTTCAAGTGACTATGT+GGG 0.664208 5.1:-46801625 MS.gene053703:CDS
ACGTCCGGAACAATAAACTC+AGG 0.666698 5.1:-46800609 MS.gene053703:intron
TATGTTCATCTTCAACATTG+GGG 0.698417 5.1:+46801557 None:intergenic
ACGTCAAGCACAGAATCGCG+CGG 0.719929 5.1:-46800955 MS.gene053703:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATATAAAATCATAATT+TGG - chr5.1:46801359-46801378 MS.gene053703:intron 10.0%
!! AAAAAGATAATAGTAATTAG+TGG + chr5.1:46800963-46800982 None:intergenic 15.0%
!! AGTAGAAAAAATTGAAATAA+CGG - chr5.1:46799867-46799886 MS.gene053703:CDS 15.0%
!!! AATTAATTTTTTTTGACAGA+AGG + chr5.1:46800136-46800155 None:intergenic 15.0%
!! GAAATAACGACAAAAATTTA+GGG + chr5.1:46800007-46800026 None:intergenic 20.0%
!! GTTGTAAAAATTGAATTGAT+AGG - chr5.1:46800288-46800307 MS.gene053703:CDS 20.0%
!! TAAAAATTGAATTGATAGGA+AGG - chr5.1:46800292-46800311 MS.gene053703:CDS 20.0%
!! TGAAATAACGACAAAAATTT+AGG + chr5.1:46800008-46800027 None:intergenic 20.0%
!! TTTATACAGAAACAGTTTAT+TGG - chr5.1:46800542-46800561 MS.gene053703:intron 20.0%
!! TTTATATAAAATAGAGGAAG+AGG + chr5.1:46800472-46800491 None:intergenic 20.0%
!!! ATAGTTTTAACATAGTATCA+TGG - chr5.1:46800096-46800115 MS.gene053703:intron 20.0%
!!! GAATTTCTATTTTGTTTCTA+TGG - chr5.1:46799691-46799710 MS.gene053703:intron 20.0%
!!! TATACATTTAGAATTTGTGA+TGG + chr5.1:46800939-46800958 None:intergenic 20.0%
!!! TCTTTGTTTGAAATTGAATA+TGG - chr5.1:46800687-46800706 MS.gene053703:intron 20.0%
! ATCTGTAAGAAAAAGTCAAA+TGG + chr5.1:46801110-46801129 None:intergenic 25.0%
! GTTTCTCAATATCTATGTAT+AGG - chr5.1:46800206-46800225 MS.gene053703:intron 25.0%
! TCATTCAAATTCTCAAGTTT+CGG + chr5.1:46801140-46801159 None:intergenic 25.0%
! TTAAAGAGAATTGTTTAGCT+TGG - chr5.1:46800154-46800173 MS.gene053703:intron 25.0%
! TTATGTTCATCTTCAACATT+GGG + chr5.1:46799638-46799657 None:intergenic 25.0%
!! GATGTTTTCCATTTAATATC+TGG - chr5.1:46800861-46800880 MS.gene053703:intron 25.0%
!! TGATGTAATTTTATCACCTT+AGG + chr5.1:46799845-46799864 None:intergenic 25.0%
!! TTCTGAAAAGATTTGAGTAT+TGG + chr5.1:46800818-46800837 None:intergenic 25.0%
!!! AAGGATGACGATTTTTTATA+TGG + chr5.1:46800448-46800467 None:intergenic 25.0%
AAAGACGAGAAAAATAACAC+TGG - chr5.1:46799898-46799917 MS.gene053703:CDS 30.0%
AGAAACAGTTTATTGGATGT+CGG - chr5.1:46800549-46800568 MS.gene053703:intron 30.0%
ATAAAATAGAGGAAGAGGTA+AGG + chr5.1:46800467-46800486 None:intergenic 30.0%
ATGTCACGCATATTATCAAT+TGG - chr5.1:46801569-46801588 MS.gene053703:CDS 30.0%
CTTATGTTCATCTTCAACAT+TGG + chr5.1:46799639-46799658 None:intergenic 30.0%
GTGTATTAGAATTCAAACGT+GGG - chr5.1:46801437-46801456 MS.gene053703:intron 30.0%
TATCCATATTTATCCTTGCA+GGG - chr5.1:46800519-46800538 MS.gene053703:intron 30.0%
TATCGAGAAAACAAGAAAAC+AGG - chr5.1:46800417-46800436 MS.gene053703:CDS 30.0%
TATGTTCATCTTCAACATTG+GGG + chr5.1:46799637-46799656 None:intergenic 30.0%
TCCATACACCAGATATTAAA+TGG + chr5.1:46800872-46800891 None:intergenic 30.0%
TCCATTTAATATCTGGTGTA+TGG - chr5.1:46800868-46800887 MS.gene053703:intron 30.0%
TGTGTATTAGAATTCAAACG+TGG - chr5.1:46801436-46801455 MS.gene053703:intron 30.0%
TTATCCATATTTATCCTTGC+AGG - chr5.1:46800518-46800537 MS.gene053703:intron 30.0%
TTGAAATTGAATATGGACGT+TGG - chr5.1:46800694-46800713 MS.gene053703:intron 30.0%
TTTGTATGTTTGTGATTCAC+AGG - chr5.1:46800339-46800358 MS.gene053703:CDS 30.0%
! AATTTTATCACCTTAGGAAC+AGG + chr5.1:46799839-46799858 None:intergenic 30.0%
! TCATACATGTTCATCCTTTT+CGG + chr5.1:46799543-46799562 None:intergenic 30.0%
! TTATTGGATGTCGGTTATAT+GGG - chr5.1:46800558-46800577 MS.gene053703:intron 30.0%
! TTTATTGGATGTCGGTTATA+TGG - chr5.1:46800557-46800576 MS.gene053703:intron 30.0%
!! AGTAGAAGGTTTTGTAATTC+AGG - chr5.1:46801334-46801353 MS.gene053703:intron 30.0%
AAACCCTGCAAGGATAAATA+TGG + chr5.1:46800525-46800544 None:intergenic 35.0%
AAGGTTCTCTTGATTCTTGA+GGG + chr5.1:46799787-46799806 None:intergenic 35.0%
ATTCCTTCAAGTGACTATGT+GGG - chr5.1:46799566-46799585 MS.gene053703:CDS 35.0%
CTAACCTGAGTTTATTGTTC+CGG + chr5.1:46800589-46800608 None:intergenic 35.0%
GAAGATGAACATAAGTAGCA+TGG - chr5.1:46799644-46799663 MS.gene053703:CDS 35.0%
TAGCTTGGAAGAGTTCATAA+TGG - chr5.1:46800169-46800188 MS.gene053703:intron 35.0%
TATTAGAATTCAAACGTGGG+TGG - chr5.1:46801440-46801459 MS.gene053703:intron 35.0%
TATTCAAGAACCTGTTCCTA+AGG - chr5.1:46799826-46799845 MS.gene053703:intron 35.0%
! GCATTTTTCTTCTTCTTTGC+AGG - chr5.1:46801514-46801533 MS.gene053703:intron 35.0%
!! ATAACAGAGTTTGTTGCCTA+AGG + chr5.1:46801547-46801566 None:intergenic 35.0%
!! TGACTTTTTCTTACAGATCG+TGG - chr5.1:46801112-46801131 MS.gene053703:intron 35.0%
AATGAAAGCAGAAGCTGCAA+AGG - chr5.1:46800836-46800855 MS.gene053703:intron 40.0%
ACAGGCTTATGTTCAACAAC+TGG - chr5.1:46800357-46800376 MS.gene053703:CDS 40.0%
ATCACACATAACATGTGTCG+TGG - chr5.1:46801404-46801423 MS.gene053703:CDS 40.0%
ATCCTCCGATCCAAAGAAAA+AGG + chr5.1:46800911-46800930 None:intergenic 40.0%
ATCTGGTGTATGGAAATCAC+CGG - chr5.1:46800878-46800897 MS.gene053703:intron 40.0%
CAAGAATCAAGAGAACCTTC+TGG - chr5.1:46799788-46799807 MS.gene053703:intron 40.0%
CACATAGTCACTTGAAGGAA+TGG + chr5.1:46799567-46799586 None:intergenic 40.0%
CATAAGTAGCATGGAGAACA+AGG - chr5.1:46799653-46799672 MS.gene053703:CDS 40.0%
CATTCCTTCAAGTGACTATG+TGG - chr5.1:46799565-46799584 MS.gene053703:CDS 40.0%
CTGAAGATGCACTGTCAATA+GGG - chr5.1:46801207-46801226 MS.gene053703:intron 40.0%
CTTGCTGAGATGATAAATGC+AGG + chr5.1:46801187-46801206 None:intergenic 40.0%
GAAGGTTCTCTTGATTCTTG+AGG + chr5.1:46799788-46799807 None:intergenic 40.0%
GTTTCTGTATAAACCCTGCA+AGG + chr5.1:46800535-46800554 None:intergenic 40.0%
TAGATTGAAGCTCATGCAGT+TGG - chr5.1:46800387-46800406 MS.gene053703:CDS 40.0%
TGTTGTTGATCATACTCTGC+TGG + chr5.1:46801244-46801263 None:intergenic 40.0%
TTCGCACTCTTAGTTCATTG+TGG - chr5.1:46801639-46801658 MS.gene053703:CDS 40.0%
! AAAATGTCGGCTGCGAAAAA+AGG - chr5.1:46800266-46800285 MS.gene053703:CDS 40.0%
! AGTGTTGAGTAGGGTAGAAA+TGG + chr5.1:46801682-46801701 None:intergenic 40.0%
! GAACGCCTTTTTCTTTGGAT+CGG - chr5.1:46800903-46800922 MS.gene053703:intron 40.0%
ACGTCCGGAACAATAAACTC+AGG - chr5.1:46800582-46800601 MS.gene053703:intron 45.0%
AGATGCACTGTCAATAGGGT+TGG - chr5.1:46801211-46801230 MS.gene053703:intron 45.0%
CAACATTCAAGCTGATCCCT+TGG - chr5.1:46801259-46801278 MS.gene053703:intron 45.0%
CAAGCTGATCCCTTGGATTT+CGG - chr5.1:46801266-46801285 MS.gene053703:intron 45.0%
CCCTTGGATTTCGGAAACTA+CGG - chr5.1:46801275-46801294 MS.gene053703:intron 45.0%
CCGTAGTTTCCGAAATCCAA+GGG + chr5.1:46801278-46801297 None:intergenic 45.0%
CGCTATAGAAACATGTCCTG+AGG + chr5.1:46801044-46801063 None:intergenic 45.0%
GACAAAGGAGAAGCAGTAGA+AGG - chr5.1:46801320-46801339 MS.gene053703:intron 45.0%
GCTGAAGATGCACTGTCAAT+AGG - chr5.1:46801206-46801225 MS.gene053703:intron 45.0%
GTCTCTTGATCATCTCCAGA+AGG + chr5.1:46799806-46799825 None:intergenic 45.0%
TACTGCTTCTCCTTTGTCCA+TGG + chr5.1:46801318-46801337 None:intergenic 45.0%
TCAATTGGTCAAGCTGCTCA+AGG - chr5.1:46801584-46801603 MS.gene053703:CDS 45.0%
TCCTGTCATGTTTCGAAGCA+GGG - chr5.1:46800661-46800680 MS.gene053703:intron 45.0%
TGTCGTGTCATGTAAACCTC+AGG - chr5.1:46801025-46801044 MS.gene053703:intron 45.0%
!! CAAAGAAAAAGGCGTTCGAC+CGG + chr5.1:46800900-46800919 None:intergenic 45.0%
!! AAATAATTTATATAAAATAG+AGG + chr5.1:46800478-46800497 None:intergenic 5.0%
!!! TTTTAAAAAATATCATTTTA+AGG + chr5.1:46800638-46800657 None:intergenic 5.0%
CCTCCCACATAGTCACTTGA+AGG + chr5.1:46799572-46799591 None:intergenic 50.0%
CCTTCAAGTGACTATGTGGG+AGG - chr5.1:46799569-46799588 MS.gene053703:CDS 50.0%
CGGAAACTACGGCTTTCAGA+TGG - chr5.1:46801286-46801305 MS.gene053703:intron 50.0%
CTCAACTAATCGCGCCGAAA+AGG - chr5.1:46799526-46799545 MS.gene053703:CDS 50.0%
CTTTGCAGGCAGATCACCTT+AGG - chr5.1:46801528-46801547 MS.gene053703:intron 50.0%
GCCGTAGTTTCCGAAATCCA+AGG + chr5.1:46801279-46801298 None:intergenic 50.0%
GTCCTGTCATGTTTCGAAGC+AGG - chr5.1:46800660-46800679 MS.gene053703:intron 50.0%
GTCGGTTATATGGGAACGTC+CGG - chr5.1:46800567-46800586 MS.gene053703:intron 50.0%
TCAAGCTGCTCAAGGCTTGT+TGG - chr5.1:46801592-46801611 MS.gene053703:CDS 50.0%
TCCCTGCTTCGAAACATGAC+AGG + chr5.1:46800665-46800684 None:intergenic 50.0%
! CGCCTTTTTCTTTGGATCGG+AGG - chr5.1:46800906-46800925 MS.gene053703:intron 50.0%
! CGGTCGAACGCCTTTTTCTT+TGG - chr5.1:46800898-46800917 MS.gene053703:intron 50.0%
!! CTCAAGGCTTGTTGGCTATG+GGG - chr5.1:46801600-46801619 MS.gene053703:CDS 50.0%
!! GCTCAAGGCTTGTTGGCTAT+GGG - chr5.1:46801599-46801618 MS.gene053703:CDS 50.0%
!! TCAAGGCTTGTTGGCTATGG+GGG - chr5.1:46801601-46801620 MS.gene053703:CDS 50.0%
!! TGCTCAAGGCTTGTTGGCTA+TGG - chr5.1:46801598-46801617 MS.gene053703:CDS 50.0%
ACGTCAAGCACAGAATCGCG+CGG - chr5.1:46800236-46800255 MS.gene053703:intron 55.0%
ATGGCTGCTGCCATGGACAA+AGG - chr5.1:46801305-46801324 MS.gene053703:intron 55.0%
CTTTCAGATGGCTGCTGCCA+TGG - chr5.1:46801298-46801317 MS.gene053703:intron 55.0%
GCGCGGCTGCTCGAAAATGT+CGG - chr5.1:46800253-46800272 MS.gene053703:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 46799504 46801709 46799504 ID=MS.gene053703
chr5.1 mRNA 46799504 46801709 46799504 ID=MS.gene053703.t1;Parent=MS.gene053703
chr5.1 exon 46801539 46801709 46801539 ID=MS.gene053703.t1.exon1;Parent=MS.gene053703.t1
chr5.1 CDS 46801539 46801709 46801539 ID=cds.MS.gene053703.t1;Parent=MS.gene053703.t1
chr5.1 exon 46801366 46801440 46801366 ID=MS.gene053703.t1.exon2;Parent=MS.gene053703.t1
chr5.1 CDS 46801366 46801440 46801366 ID=cds.MS.gene053703.t1;Parent=MS.gene053703.t1
chr5.1 exon 46800926 46800985 46800926 ID=MS.gene053703.t1.exon3;Parent=MS.gene053703.t1
chr5.1 CDS 46800926 46800985 46800926 ID=cds.MS.gene053703.t1;Parent=MS.gene053703.t1
chr5.1 exon 46800775 46800852 46800775 ID=MS.gene053703.t1.exon4;Parent=MS.gene053703.t1
chr5.1 CDS 46800775 46800852 46800775 ID=cds.MS.gene053703.t1;Parent=MS.gene053703.t1
chr5.1 exon 46800610 46800673 46800610 ID=MS.gene053703.t1.exon5;Parent=MS.gene053703.t1
chr5.1 CDS 46800610 46800673 46800610 ID=cds.MS.gene053703.t1;Parent=MS.gene053703.t1
chr5.1 exon 46800260 46800531 46800260 ID=MS.gene053703.t1.exon6;Parent=MS.gene053703.t1
chr5.1 CDS 46800260 46800531 46800260 ID=cds.MS.gene053703.t1;Parent=MS.gene053703.t1
chr5.1 exon 46799858 46800085 46799858 ID=MS.gene053703.t1.exon7;Parent=MS.gene053703.t1
chr5.1 CDS 46799858 46800085 46799858 ID=cds.MS.gene053703.t1;Parent=MS.gene053703.t1
chr5.1 exon 46799504 46799677 46799504 ID=MS.gene053703.t1.exon8;Parent=MS.gene053703.t1
chr5.1 CDS 46799504 46799677 46799504 ID=cds.MS.gene053703.t1;Parent=MS.gene053703.t1
Gene Sequence

>MS.gene053703

ATGAACTCTTCTTCATCATCAACTCAACTAATCGCGCCGAAAAGGATGAACATGTATGAGCCATTCCTTCAAGTGACTATGTGGGAGGATAGCTTTAAAGTTGATCATAGTACTTTGAATTCAATTGCTTCCCCAATGTTGAAGATGAACATAAGTAGCATGGAGAACAAGGTGAAATTGAACTCATGAATTTCTATTTTGTTTCTATGGTTATCTATGTTTTATGAGAAAACTAGTTGACAATAGTCTTTTGAATTTTATTTGTATAGTCTGAATGTATCCCTCAAGAATCAAGAGAACCTTCTGGAGATGATCAAGAGACTATTCAAGAACCTGTTCCTAAGGTGATAAAATTACATCACTAGTAGAAAAAATTGAAATAACGGCAGAAATTAAAGACGAGAAAAATAACACTGGTTACTAAATTTAGCGTTTCTAACACTTAGAGACGCTTCTTCAAAAAAAAAAAAACACTTCGAGACGCATTTTGTCTTTTTTGTCCCTAAATTTTTGTCGTTATTTCAACTTTTTTAAGTAGTGATTTATATTTCTTTTATATATTTAGTCATGATAATTTTCATGTTTCATTTTAATAGTTTTAACATAGTATCATGGAGTTTGAGAAGTGACCTTCTGTCAAAAAAAATTAATTAAAGAGAATTGTTTAGCTTGGAAGAGTTCATAATGGATTCTGACATTATAGTTTCTCAATATCTATGTATAGGTACTACGACGTCAAGCACAGAATCGCGCGGCTGCTCGAAAATGTCGGCTGCGAAAAAAGGTTGTAAAAATTGAATTGATAGGAAGGAAGCTACTAGTGTTTATGATCTTATTTGTATGTTTGTGATTCACAGGCTTATGTTCAACAACTGGAAACGAGTAGATTGAAGCTCATGCAGTTGGAATTAGATATCGAGAAAACAAGAAAACAGGTGATACCATATAAAAAATCGTCATCCTTACCTCTTCCTCTATTTTATATAAATTATTTCATCTATCATTCATAAAGATTTATCCATATTTATCCTTGCAGGGTTTATACAGAAACAGTTTATTGGATGTCGGTTATATGGGAACGTCCGGAACAATAAACTCAGGTTAGTGATTGATAATTGTAGTTTTAAGTTTCCTTAAAATGATATTTTTTAAAATAGTCCTGTCATGTTTCGAAGCAGGGATATCTTTGTTTGAAATTGAATATGGACGTTGGATTGAAGAACAAGATCGAAAAAACGAAGAACTAAGAAATGCATTGCAAACTAATGCATCTGATATACAACTTCATCTACTTGTTGAGAGTAGCTTGAACCAATACTCAAATCTTTTCAGAATGAAAGCAGAAGCTGCAAAGGCTGATGTTTTCCATTTAATATCTGGTGTATGGAAATCACCGGTCGAACGCCTTTTTCTTTGGATCGGAGGATCTCGTCCATCACAAATTCTAAATGTATATCCACTAATTACTATTATCTTTTTTATATTTTCTTTGTTCTATGTTTTGTAAATTGTTAAACATCATGTCGTGTCATGTAAACCTCAGGACATGTTTCTATAGCGTCGATTGATACATGTAGCTAATCTATCGATGATTTTGTACAAACCATTTGACTTTTTCTTACAGATCGTGGTACCGAAACTTGAGAATTTGAATGATCAACAAATTGCTAGCATTAACAACCTGCATTTATCATCTCAGCAAGCTGAAGATGCACTGTCAATAGGGTTGGAGAAACTCCAGCAGAGTATGATCAACAACATTCAAGCTGATCCCTTGGATTTCGGAAACTACGGCTTTCAGATGGCTGCTGCCATGGACAAAGGAGAAGCAGTAGAAGGTTTTGTAATTCAGGTAATCAATATAAAATCATAATTTGGTCTTGTTTGTTGTTTGTTATCAATCACACATAACATGTGTCGTGGAAACATTAATGTGTATTAGAATTCAAACGTGGGTGGTTAGTCTTGCATCGATTTTTCTTTTTTCGCACTTTCTACAGCTAAATTGAAGCATTTTTCTTCTTCTTTGCAGGCAGATCACCTTAGGCAACAAACTCTGTTATACATGTCACGCATATTATCAATTGGTCAAGCTGCTCAAGGCTTGTTGGCTATGGGGGAATACTTTCATCGTCTTCGCACTCTTAGTTCATTGTGGACTGCTCGTTCATGTCACCATTTCTACCCTACTCAACACTCAAATTAA
Protein sequence

>MS.gene053703.t1

MNSSSSSTQLIAPKRMNMYEPFLQVTMWEDSFKVDHSTLNSIASPMLKMNISSMENKSECIPQESREPSGDDQETIQEPVPKVLRRQAQNRAAARKCRLRKKAYVQQLETSRLKLMQLELDIEKTRKQGLYRNSLLDVGYMGTSGTINSGISLFEIEYGRWIEEQDRKNEELRNALQTNASDIQLHLLVESSLNQYSNLFRMKAEAAKADVFHLISGVWKSPVERLFLWIGGSRPSQILNIVVPKLENLNDQQIASINNLHLSSQQAEDALSIGLEKLQQSMINNIQADPLDFGNYGFQMAAAMDKGEAVEGFVIQADHLRQQTLLYMSRILSIGQAAQGLLAMGEYFHRLRTLSSLWTARSCHHFYPTQHSN