Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053769.t1 | XP_003614758.2 | 98 | 394 | 7 | 1 | 21 | 413 | 115 | 508 | 4.60E-221 | 776.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053769.t1 | Q5NE24 | 68.3 | 401 | 102 | 8 | 21 | 407 | 114 | 503 | 1.3e-144 | 514.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053769.t1 | G7K8U7 | 98.0 | 394 | 7 | 1 | 21 | 413 | 113 | 506 | 3.3e-221 | 776.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene053769.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053769.t1 | MTR_5g058860 | 97.826 | 414 | 7 | 2 | 1 | 413 | 94 | 506 | 0.0 | 833 |
| MS.gene053769.t1 | MTR_3g072710 | 68.460 | 409 | 102 | 9 | 14 | 407 | 107 | 503 | 0.0 | 531 |
| MS.gene053769.t1 | MTR_8g093070 | 37.438 | 406 | 216 | 14 | 8 | 404 | 120 | 496 | 2.44e-63 | 212 |
| MS.gene053769.t1 | MTR_7g027190 | 36.691 | 417 | 210 | 17 | 13 | 405 | 288 | 674 | 1.88e-62 | 213 |
| MS.gene053769.t1 | MTR_7g074650 | 35.561 | 374 | 214 | 11 | 32 | 403 | 443 | 791 | 2.74e-52 | 187 |
| MS.gene053769.t1 | MTR_3g065980 | 34.559 | 408 | 208 | 16 | 21 | 403 | 166 | 539 | 1.61e-51 | 181 |
| MS.gene053769.t1 | MTR_1g069725 | 32.836 | 402 | 238 | 10 | 6 | 405 | 93 | 464 | 7.14e-48 | 170 |
| MS.gene053769.t1 | MTR_4g076020 | 35.989 | 364 | 188 | 13 | 56 | 411 | 110 | 436 | 2.10e-47 | 168 |
| MS.gene053769.t1 | MTR_5g097480 | 30.311 | 386 | 247 | 9 | 24 | 403 | 174 | 543 | 2.80e-44 | 162 |
| MS.gene053769.t1 | MTR_1g096030 | 31.235 | 413 | 240 | 12 | 17 | 406 | 70 | 461 | 4.30e-43 | 157 |
| MS.gene053769.t1 | MTR_8g442410 | 31.910 | 398 | 236 | 13 | 20 | 403 | 148 | 524 | 6.28e-42 | 155 |
| MS.gene053769.t1 | MTR_3g056110 | 30.959 | 365 | 226 | 10 | 48 | 403 | 194 | 541 | 5.52e-41 | 152 |
| MS.gene053769.t1 | MTR_1g029420 | 31.332 | 383 | 243 | 12 | 26 | 403 | 224 | 591 | 5.82e-41 | 153 |
| MS.gene053769.t1 | MTR_4g104020 | 29.327 | 416 | 262 | 10 | 3 | 405 | 125 | 521 | 1.37e-40 | 151 |
| MS.gene053769.t1 | MTR_4g102790 | 30.597 | 402 | 242 | 15 | 20 | 406 | 285 | 664 | 8.92e-40 | 150 |
| MS.gene053769.t1 | MTR_2g082090 | 29.574 | 399 | 256 | 10 | 14 | 403 | 196 | 578 | 1.00e-39 | 149 |
| MS.gene053769.t1 | MTR_4g077760 | 31.322 | 348 | 223 | 6 | 58 | 403 | 221 | 554 | 1.96e-39 | 148 |
| MS.gene053769.t1 | MTR_3g089055 | 29.843 | 382 | 250 | 9 | 26 | 403 | 202 | 569 | 2.08e-39 | 149 |
| MS.gene053769.t1 | MTR_3g089055 | 29.843 | 382 | 250 | 9 | 26 | 403 | 197 | 564 | 2.29e-39 | 148 |
| MS.gene053769.t1 | MTR_4g133660 | 29.379 | 354 | 231 | 8 | 58 | 405 | 204 | 544 | 2.85e-38 | 145 |
| MS.gene053769.t1 | MTR_4g076140 | 26.096 | 456 | 251 | 14 | 13 | 403 | 34 | 468 | 1.59e-34 | 134 |
| MS.gene053769.t1 | MTR_2g026250 | 26.331 | 357 | 238 | 10 | 58 | 405 | 257 | 597 | 1.47e-33 | 132 |
| MS.gene053769.t1 | MTR_5g094450 | 28.571 | 392 | 250 | 11 | 24 | 403 | 158 | 531 | 2.36e-33 | 131 |
| MS.gene053769.t1 | MTR_2g097410 | 27.114 | 402 | 254 | 13 | 19 | 404 | 363 | 741 | 5.85e-31 | 125 |
| MS.gene053769.t1 | MTR_4g064200 | 27.877 | 391 | 245 | 15 | 27 | 404 | 284 | 650 | 3.71e-30 | 123 |
| MS.gene053769.t1 | MTR_0092s0100 | 29.820 | 389 | 238 | 15 | 24 | 405 | 369 | 729 | 4.20e-29 | 120 |
| MS.gene053769.t1 | MTR_0092s0100 | 29.820 | 389 | 238 | 15 | 24 | 405 | 372 | 732 | 5.63e-29 | 119 |
| MS.gene053769.t1 | MTR_2g097467 | 26.891 | 357 | 232 | 9 | 57 | 403 | 316 | 653 | 6.54e-29 | 119 |
| MS.gene053769.t1 | MTR_4g064150 | 27.404 | 416 | 265 | 13 | 5 | 404 | 339 | 733 | 1.60e-28 | 118 |
| MS.gene053769.t1 | MTR_2g034250 | 25.926 | 405 | 264 | 11 | 16 | 403 | 199 | 584 | 2.36e-28 | 117 |
| MS.gene053769.t1 | MTR_3g022830 | 25.255 | 392 | 242 | 9 | 56 | 403 | 51 | 435 | 8.27e-28 | 114 |
| MS.gene053769.t1 | MTR_2g097473 | 26.816 | 358 | 233 | 9 | 57 | 404 | 316 | 654 | 1.82e-27 | 115 |
| MS.gene053769.t1 | MTR_2g034260 | 26.277 | 411 | 260 | 15 | 11 | 403 | 198 | 583 | 3.06e-27 | 114 |
| MS.gene053769.t1 | MTR_4g064120 | 25.238 | 420 | 270 | 12 | 5 | 406 | 232 | 625 | 1.77e-26 | 112 |
| MS.gene053769.t1 | MTR_8g077940 | 29.082 | 392 | 240 | 15 | 24 | 405 | 179 | 542 | 2.15e-26 | 111 |
| MS.gene053769.t1 | MTR_2g097463 | 26.536 | 358 | 234 | 10 | 57 | 404 | 317 | 655 | 2.27e-26 | 112 |
| MS.gene053769.t1 | MTR_7g062120 | 24.205 | 409 | 281 | 10 | 5 | 403 | 350 | 739 | 3.97e-26 | 111 |
| MS.gene053769.t1 | MTR_4g064180 | 26.005 | 423 | 263 | 15 | 5 | 406 | 232 | 625 | 5.01e-26 | 110 |
| MS.gene053769.t1 | MTR_2g099110 | 30.240 | 334 | 189 | 14 | 3 | 316 | 42 | 351 | 6.07e-26 | 109 |
| MS.gene053769.t1 | MTR_4g097080 | 26.042 | 384 | 265 | 10 | 26 | 403 | 132 | 502 | 3.05e-25 | 107 |
| MS.gene053769.t1 | MTR_5g015490 | 28.218 | 404 | 237 | 17 | 26 | 403 | 113 | 489 | 2.27e-24 | 105 |
| MS.gene053769.t1 | MTR_5g009080 | 31.760 | 233 | 135 | 7 | 14 | 242 | 43 | 255 | 2.32e-24 | 105 |
| MS.gene053769.t1 | MTR_2g034280 | 24.190 | 401 | 279 | 11 | 11 | 403 | 191 | 574 | 3.74e-24 | 105 |
| MS.gene053769.t1 | MTR_4g064160 | 25.622 | 402 | 269 | 12 | 14 | 404 | 302 | 684 | 4.61e-24 | 105 |
| MS.gene053769.t1 | MTR_2g097390 | 26.357 | 387 | 254 | 13 | 27 | 403 | 275 | 640 | 1.43e-23 | 103 |
| MS.gene053769.t1 | MTR_2g097380 | 24.650 | 357 | 214 | 10 | 57 | 404 | 251 | 561 | 4.26e-23 | 102 |
| MS.gene053769.t1 | MTR_2g097350 | 26.087 | 391 | 250 | 15 | 27 | 403 | 274 | 639 | 9.84e-23 | 100 |
| MS.gene053769.t1 | MTR_2g097310 | 24.289 | 387 | 264 | 11 | 27 | 404 | 272 | 638 | 6.66e-22 | 98.6 |
| MS.gene053769.t1 | MTR_7g109580 | 23.951 | 405 | 262 | 16 | 16 | 403 | 178 | 553 | 9.75e-21 | 94.7 |
| MS.gene053769.t1 | MTR_4g026485 | 25.455 | 385 | 251 | 14 | 28 | 405 | 270 | 625 | 1.71e-20 | 94.4 |
| MS.gene053769.t1 | MTR_7g069740 | 25.908 | 413 | 255 | 17 | 10 | 403 | 203 | 583 | 7.95e-17 | 82.8 |
| MS.gene053769.t1 | MTR_1g086970 | 22.738 | 409 | 275 | 12 | 16 | 406 | 95 | 480 | 8.57e-16 | 79.3 |
| MS.gene053769.t1 | MTR_2g089100 | 25.122 | 410 | 269 | 12 | 21 | 404 | 46 | 443 | 9.94e-16 | 79.3 |
| MS.gene053769.t1 | MTR_7g057230 | 27.097 | 310 | 197 | 10 | 105 | 403 | 365 | 656 | 7.15e-14 | 73.9 |
| MS.gene053769.t1 | MTR_8g020840 | 24.181 | 397 | 263 | 14 | 26 | 403 | 170 | 547 | 5.27e-13 | 70.9 |
| MS.gene053769.t1 | MTR_6g047750 | 25.635 | 394 | 247 | 15 | 28 | 403 | 296 | 661 | 2.07e-11 | 66.2 |
| MS.gene053769.t1 | MTR_4g095500 | 23.888 | 427 | 259 | 17 | 26 | 403 | 58 | 467 | 8.85e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053769.t1 | AT4G08250 | 56.777 | 391 | 162 | 4 | 13 | 403 | 93 | 476 | 6.37e-147 | 426 |
| MS.gene053769.t1 | AT3G54220 | 36.658 | 401 | 222 | 13 | 13 | 407 | 279 | 653 | 6.08e-55 | 192 |
| MS.gene053769.t1 | AT3G03450 | 34.615 | 390 | 226 | 13 | 21 | 403 | 177 | 544 | 2.12e-53 | 186 |
| MS.gene053769.t1 | AT5G17490 | 35.589 | 399 | 222 | 15 | 18 | 409 | 151 | 521 | 2.60e-52 | 183 |
| MS.gene053769.t1 | AT5G41920 | 35.000 | 400 | 224 | 12 | 12 | 403 | 28 | 399 | 2.33e-51 | 177 |
| MS.gene053769.t1 | AT1G66350 | 32.741 | 394 | 217 | 15 | 21 | 403 | 149 | 505 | 4.88e-47 | 169 |
| MS.gene053769.t1 | AT2G01570 | 33.249 | 397 | 227 | 16 | 16 | 403 | 213 | 580 | 5.43e-46 | 167 |
| MS.gene053769.t1 | AT1G14920 | 31.566 | 396 | 235 | 14 | 16 | 403 | 161 | 528 | 1.05e-43 | 160 |
| MS.gene053769.t1 | AT5G48150 | 30.809 | 383 | 242 | 10 | 28 | 403 | 123 | 489 | 6.49e-43 | 157 |
| MS.gene053769.t1 | AT5G48150 | 30.809 | 383 | 242 | 10 | 28 | 403 | 123 | 489 | 6.49e-43 | 157 |
| MS.gene053769.t1 | AT5G48150 | 30.809 | 383 | 242 | 10 | 28 | 403 | 123 | 489 | 6.49e-43 | 157 |
| MS.gene053769.t1 | AT5G48150 | 30.809 | 383 | 242 | 10 | 28 | 403 | 123 | 489 | 6.49e-43 | 157 |
| MS.gene053769.t1 | AT1G55580 | 31.771 | 384 | 209 | 10 | 60 | 403 | 74 | 444 | 2.73e-41 | 152 |
| MS.gene053769.t1 | AT2G04890 | 30.612 | 392 | 247 | 11 | 15 | 403 | 43 | 412 | 2.83e-41 | 151 |
| MS.gene053769.t1 | AT1G50600 | 30.663 | 362 | 231 | 8 | 48 | 403 | 178 | 525 | 9.57e-41 | 152 |
| MS.gene053769.t1 | AT1G50600 | 30.939 | 362 | 230 | 8 | 48 | 403 | 249 | 596 | 3.80e-40 | 151 |
| MS.gene053769.t1 | AT1G50600 | 30.939 | 362 | 230 | 8 | 48 | 403 | 253 | 600 | 3.95e-40 | 151 |
| MS.gene053769.t1 | AT4G17230 | 31.472 | 394 | 236 | 12 | 22 | 403 | 153 | 524 | 1.29e-38 | 146 |
| MS.gene053769.t1 | AT4G17230 | 31.472 | 394 | 236 | 12 | 22 | 403 | 153 | 524 | 1.29e-38 | 146 |
| MS.gene053769.t1 | AT3G50650 | 32.514 | 366 | 217 | 10 | 49 | 403 | 195 | 541 | 6.03e-38 | 144 |
| MS.gene053769.t1 | AT5G66770 | 30.457 | 394 | 255 | 10 | 14 | 403 | 205 | 583 | 1.28e-37 | 144 |
| MS.gene053769.t1 | AT1G63100 | 29.268 | 410 | 246 | 12 | 17 | 404 | 267 | 654 | 3.06e-35 | 137 |
| MS.gene053769.t1 | AT1G63100 | 29.268 | 410 | 246 | 12 | 17 | 404 | 242 | 629 | 3.19e-35 | 137 |
| MS.gene053769.t1 | AT1G21450 | 28.535 | 389 | 247 | 13 | 26 | 403 | 224 | 592 | 2.16e-31 | 126 |
| MS.gene053769.t1 | AT4G37650 | 28.680 | 394 | 253 | 12 | 27 | 403 | 146 | 528 | 9.11e-31 | 124 |
| MS.gene053769.t1 | AT3G60630 | 28.780 | 410 | 258 | 12 | 12 | 405 | 232 | 623 | 2.01e-28 | 117 |
| MS.gene053769.t1 | AT4G36710 | 29.380 | 371 | 227 | 13 | 43 | 403 | 139 | 484 | 1.67e-27 | 114 |
| MS.gene053769.t1 | AT2G29065 | 27.068 | 399 | 248 | 11 | 27 | 404 | 252 | 628 | 5.91e-27 | 113 |
| MS.gene053769.t1 | AT3G46600 | 26.055 | 403 | 238 | 13 | 26 | 403 | 3 | 370 | 6.29e-27 | 111 |
| MS.gene053769.t1 | AT3G46600 | 25.238 | 420 | 254 | 13 | 9 | 403 | 162 | 546 | 1.86e-26 | 111 |
| MS.gene053769.t1 | AT3G46600 | 25.238 | 420 | 254 | 13 | 9 | 403 | 194 | 578 | 1.94e-26 | 112 |
| MS.gene053769.t1 | AT1G07530 | 25.679 | 405 | 277 | 10 | 8 | 404 | 377 | 765 | 1.63e-25 | 109 |
| MS.gene053769.t1 | AT2G29060 | 25.837 | 418 | 265 | 15 | 5 | 406 | 269 | 657 | 1.78e-25 | 109 |
| MS.gene053769.t1 | AT2G29060 | 25.837 | 418 | 265 | 15 | 5 | 406 | 306 | 694 | 1.96e-25 | 109 |
| MS.gene053769.t1 | AT5G59450 | 26.396 | 394 | 256 | 12 | 24 | 403 | 224 | 597 | 9.62e-25 | 107 |
| MS.gene053769.t1 | AT2G45160 | 27.295 | 403 | 242 | 16 | 24 | 405 | 268 | 640 | 2.71e-24 | 105 |
| MS.gene053769.t1 | AT1G07520 | 25.693 | 397 | 255 | 9 | 27 | 404 | 154 | 529 | 1.96e-23 | 102 |
| MS.gene053769.t1 | AT1G07520 | 25.693 | 397 | 255 | 9 | 27 | 404 | 154 | 529 | 1.96e-23 | 102 |
| MS.gene053769.t1 | AT1G07520 | 25.575 | 391 | 263 | 8 | 27 | 404 | 318 | 693 | 2.05e-23 | 103 |
| MS.gene053769.t1 | AT1G07520 | 25.575 | 391 | 263 | 8 | 27 | 404 | 319 | 694 | 2.21e-23 | 103 |
| MS.gene053769.t1 | AT1G50420 | 31.646 | 237 | 140 | 7 | 18 | 251 | 48 | 265 | 5.20e-23 | 101 |
| MS.gene053769.t1 | AT1G50420 | 30.263 | 152 | 103 | 3 | 255 | 405 | 331 | 480 | 3.22e-12 | 68.6 |
| MS.gene053769.t1 | AT4G00150 | 27.676 | 383 | 240 | 12 | 28 | 407 | 209 | 557 | 5.89e-22 | 98.6 |
| MS.gene053769.t1 | AT2G37650 | 25.450 | 389 | 261 | 11 | 24 | 403 | 332 | 700 | 7.93e-22 | 98.6 |
| MS.gene053769.t1 | AT2G37650 | 25.450 | 389 | 261 | 11 | 24 | 403 | 344 | 712 | 8.64e-22 | 98.2 |
| MS.gene053769.t1 | AT5G52510 | 27.812 | 320 | 204 | 8 | 101 | 403 | 330 | 639 | 7.31e-18 | 86.3 |
| MS.gene053769.t1 | AT3G49950 | 25.000 | 400 | 263 | 14 | 26 | 406 | 29 | 410 | 3.60e-15 | 77.4 |
| MS.gene053769.t1 | AT3G13840 | 25.558 | 403 | 269 | 11 | 9 | 403 | 130 | 509 | 5.44e-14 | 73.9 |
Find 135 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCTTGTTTGTGCCTGTT+AGG | 0.230972 | 5.1:+45649006 | None:intergenic |
| TTGTCAAGCAAAGTTGTTAT+TGG | 0.254379 | 5.1:-45648016 | MS.gene053769:CDS |
| TTTGCCACTGTTCAAGAAAC+TGG | 0.314348 | 5.1:-45648549 | MS.gene053769:CDS |
| CAGTGCGGTTTAGCAGAGTT+TGG | 0.316229 | 5.1:+45648883 | None:intergenic |
| GGGGAGTGGTTGGGTGTGGA+AGG | 0.333319 | 5.1:-45648072 | MS.gene053769:CDS |
| CCGTCTAGTGCACCTCCTTA+TGG | 0.339880 | 5.1:-45649042 | MS.gene053769:CDS |
| GGTAACAATAAGTTGGTGTT+AGG | 0.342092 | 5.1:-45647958 | MS.gene053769:CDS |
| AGGAGCAAGAGAGGGGTTCT+TGG | 0.346584 | 5.1:-45648095 | MS.gene053769:CDS |
| TGTCAAGCAAAGTTGTTATT+GGG | 0.347692 | 5.1:-45648015 | MS.gene053769:CDS |
| TTGAACGGTGCCAAGGAGTT+AGG | 0.348949 | 5.1:-45648339 | MS.gene053769:CDS |
| ATTTGCCACATCTTAGTTAC+CGG | 0.358640 | 5.1:-45648386 | MS.gene053769:CDS |
| GCTTGTTCGCGGAGAGGCTT+TGG | 0.359996 | 5.1:-45648427 | MS.gene053769:CDS |
| GGAGCAAGAGAGGGGTTCTT+GGG | 0.366153 | 5.1:-45648094 | MS.gene053769:CDS |
| CTTCACCAGTCATGTACAAC+TGG | 0.367257 | 5.1:+45648121 | None:intergenic |
| GGTTGCTTTCTGCTTCTGTT+TGG | 0.368542 | 5.1:-45647921 | MS.gene053769:CDS |
| CTCCTAGCCCATTTATTCAT+AGG | 0.371100 | 5.1:+45648192 | None:intergenic |
| AGGGTTTGTGGGTTTGTTCA+TGG | 0.374191 | 5.1:-45648265 | MS.gene053769:CDS |
| CATCAGTGATGCAGGGTTTG+TGG | 0.374198 | 5.1:-45648277 | MS.gene053769:CDS |
| ATCAGTGATGCAGGGTTTGT+GGG | 0.378277 | 5.1:-45648276 | MS.gene053769:CDS |
| GCGGCAGCGGAGGCCCTAAC+AGG | 0.386266 | 5.1:-45649020 | MS.gene053769:CDS |
| CATAGTGGACTTTGATATCA+TGG | 0.386901 | 5.1:-45648700 | MS.gene053769:CDS |
| ACAATAAGTTGGTGTTAGGT+TGG | 0.398047 | 5.1:-45647954 | MS.gene053769:CDS |
| TTTCATGAGTAACAGCTTCA+AGG | 0.400010 | 5.1:+45648733 | None:intergenic |
| CGTCAAGTTTGCTCATTTCA+CGG | 0.410498 | 5.1:-45648769 | MS.gene053769:CDS |
| ACTCTTGTTTGTGCCTGTTA+GGG | 0.415722 | 5.1:+45649007 | None:intergenic |
| GGGAGTGGTTGGGTGTGGAA+GGG | 0.418452 | 5.1:-45648071 | MS.gene053769:CDS |
| GAGCAAGAGAGGGGTTCTTG+GGG | 0.418617 | 5.1:-45648093 | MS.gene053769:CDS |
| GGGCCTCCGCTGCCGCCATA+AGG | 0.429881 | 5.1:+45649027 | None:intergenic |
| TGCGAAGATGTGGGCCCGGC+AGG | 0.434472 | 5.1:+45648625 | None:intergenic |
| GTGAAGAGGAGGAGCAAGAG+AGG | 0.436685 | 5.1:-45648104 | MS.gene053769:CDS |
| CTCCGTTGTCGAATTTGAGT+TGG | 0.441756 | 5.1:+45649094 | None:intergenic |
| CCTCCTTATGGCGGCAGCGG+AGG | 0.448204 | 5.1:-45649030 | MS.gene053769:CDS |
| ACATTAGTCGAGGAGGAAGT+TGG | 0.450988 | 5.1:-45648303 | MS.gene053769:CDS |
| GCCACTGAGCCCATTATTCG+TGG | 0.457871 | 5.1:+45648144 | None:intergenic |
| TCGCGAAAAGAAGGCCTGCC+GGG | 0.460380 | 5.1:-45648639 | MS.gene053769:CDS |
| GGAGGAGGAGGATGACAGAA+AGG | 0.460604 | 5.1:-45649069 | MS.gene053769:CDS |
| GTTGGGCCCATCAGTGATGC+AGG | 0.463923 | 5.1:-45648285 | MS.gene053769:CDS |
| AAGCTGTTACTCATGAAAGA+AGG | 0.464529 | 5.1:-45648728 | MS.gene053769:CDS |
| CAGTGAGAAGGCAGAGTTTG+TGG | 0.469456 | 5.1:+45648850 | None:intergenic |
| TAACAGCTTCAAGGATAGCT+TGG | 0.472914 | 5.1:+45648742 | None:intergenic |
| ATGTATGACTCGTTCGAGGC+TGG | 0.473935 | 5.1:-45648219 | MS.gene053769:CDS |
| TTCGACAACGGAGGAGGAGG+AGG | 0.476647 | 5.1:-45649084 | MS.gene053769:CDS |
| TATCATGGAAGGGGCCCAAT+GGG | 0.484349 | 5.1:-45648685 | MS.gene053769:CDS |
| GAGCTTTGTTCCTAACTCCT+TGG | 0.485022 | 5.1:+45648329 | None:intergenic |
| CACAAACCCTGCATCACTGA+TGG | 0.485791 | 5.1:+45648278 | None:intergenic |
| CACAAACTCTGCCTTCTCAC+TGG | 0.485867 | 5.1:-45648849 | MS.gene053769:CDS |
| TGGCTCAAGTGATATTGATT+CGG | 0.487459 | 5.1:-45648977 | MS.gene053769:CDS |
| GCACCTCCTTATGGCGGCAG+CGG | 0.487716 | 5.1:-45649033 | MS.gene053769:CDS |
| TGAGAGTATGTCTGTTTGGT+GGG | 0.489093 | 5.1:+45648824 | None:intergenic |
| ATCGCGAAAAGAAGGCCTGC+CGG | 0.491290 | 5.1:-45648640 | MS.gene053769:CDS |
| TGGGTATAGAGTGGAAGAGT+TGG | 0.492982 | 5.1:-45647980 | MS.gene053769:CDS |
| CATTAGTCGAGGAGGAAGTT+GGG | 0.496069 | 5.1:-45648302 | MS.gene053769:CDS |
| TCACTTTCATCGCGAAAAGA+AGG | 0.496428 | 5.1:-45648648 | MS.gene053769:CDS |
| TATTGGGTTTATTTAACGAT+GGG | 0.498402 | 5.1:-45647999 | MS.gene053769:CDS |
| CCTCCGCTGCCGCCATAAGG+AGG | 0.504163 | 5.1:+45649030 | None:intergenic |
| CTCAAATTCGACAACGGAGG+AGG | 0.505265 | 5.1:-45649090 | MS.gene053769:CDS |
| AGAGTTGGGTAACAATAAGT+TGG | 0.507514 | 5.1:-45647965 | MS.gene053769:CDS |
| AGGCTGAGAGTATGTCTGTT+TGG | 0.507765 | 5.1:+45648820 | None:intergenic |
| CTGCTAAACCGCACTGATTG+TGG | 0.507905 | 5.1:-45648876 | MS.gene053769:CDS |
| TGCGGTTTAGCAGAGTTTGG+AGG | 0.513419 | 5.1:+45648886 | None:intergenic |
| TTGAATGAGTGAAGCCCATT+GGG | 0.514305 | 5.1:+45648671 | None:intergenic |
| AGTGATATTGATTCGGCTCA+AGG | 0.514796 | 5.1:-45648970 | MS.gene053769:CDS |
| CACAAACAAGAGTCACCATC+TGG | 0.516410 | 5.1:-45648997 | MS.gene053769:CDS |
| TCTTCGTTGAAGCTTGTTCG+CGG | 0.517579 | 5.1:-45648438 | MS.gene053769:CDS |
| GGGTATAGAGTGGAAGAGTT+GGG | 0.517918 | 5.1:-45647979 | MS.gene053769:CDS |
| TTCCTATGAATAAATGGGCT+AGG | 0.520025 | 5.1:-45648194 | MS.gene053769:CDS |
| GACAACGGAGGAGGAGGAGG+AGG | 0.522162 | 5.1:-45649081 | MS.gene053769:CDS |
| TTGGGTGTGGAAGGGTTCAA+AGG | 0.525480 | 5.1:-45648063 | MS.gene053769:CDS |
| ATAACAACTTTGCTTGACAA+TGG | 0.528206 | 5.1:+45648019 | None:intergenic |
| TTTGGTGGGGTCCAGTGAGA+AGG | 0.528926 | 5.1:+45648838 | None:intergenic |
| TGAAAGAAGGGTTCACATAG+TGG | 0.529945 | 5.1:-45648715 | MS.gene053769:CDS |
| AGCAAGAGAGGGGTTCTTGG+GGG | 0.535736 | 5.1:-45648092 | MS.gene053769:CDS |
| TGAGTTGGACATGTCTCCCA+TGG | 0.535777 | 5.1:+45649109 | None:intergenic |
| TAAATGGGCTAGGAGTTTAG+TGG | 0.535874 | 5.1:-45648184 | MS.gene053769:CDS |
| AAAGGAGTTAACATAAGCTA+TGG | 0.536826 | 5.1:-45648045 | MS.gene053769:CDS |
| TCTTCCAGTTTCTTGAACAG+TGG | 0.536983 | 5.1:+45648545 | None:intergenic |
| GCAAGAGAGGGGTTCTTGGG+GGG | 0.538404 | 5.1:-45648091 | MS.gene053769:CDS |
| TTATTGGGTTTATTTAACGA+TGG | 0.539610 | 5.1:-45648000 | MS.gene053769:CDS |
| CTGAGAGTATGTCTGTTTGG+TGG | 0.539651 | 5.1:+45648823 | None:intergenic |
| AGCGATGTATGACTCGTTCG+AGG | 0.539838 | 5.1:-45648223 | MS.gene053769:CDS |
| GAGGAGGAGGATGACAGAAA+GGG | 0.544247 | 5.1:-45649068 | MS.gene053769:CDS |
| AGTTTCTTGAACAGTGGCAA+AGG | 0.546696 | 5.1:+45648551 | None:intergenic |
| GCGGTTTAGCAGAGTTTGGA+GGG | 0.547023 | 5.1:+45648887 | None:intergenic |
| TCTATTGCTTCATTCTTGAA+CGG | 0.552156 | 5.1:-45648354 | MS.gene053769:CDS |
| CTCCATGTTGGTGCCGTGAG+TGG | 0.552588 | 5.1:+45648935 | None:intergenic |
| TTCATTCTTGAACGGTGCCA+AGG | 0.558389 | 5.1:-45648346 | MS.gene053769:CDS |
| GACTTAGTGTCCTCCACTCA+CGG | 0.564053 | 5.1:-45648948 | MS.gene053769:CDS |
| ATTTAACGATGGGTATAGAG+TGG | 0.564807 | 5.1:-45647989 | MS.gene053769:CDS |
| AGCTGTTACTCATGAAAGAA+GGG | 0.566179 | 5.1:-45648727 | MS.gene053769:CDS |
| ACAAACCCTGCATCACTGAT+GGG | 0.566848 | 5.1:+45648279 | None:intergenic |
| AAATTCGACAACGGAGGAGG+AGG | 0.568207 | 5.1:-45649087 | MS.gene053769:CDS |
| TTTGCCACATCTTAGTTACC+GGG | 0.572604 | 5.1:-45648385 | MS.gene053769:CDS |
| GTGGACTTTGATATCATGGA+AGG | 0.574432 | 5.1:-45648696 | MS.gene053769:CDS |
| AAGCAATAGAATCTGAAGCC+CGG | 0.574832 | 5.1:+45648367 | None:intergenic |
| ATTGAATGAGTGAAGCCCAT+TGG | 0.575421 | 5.1:+45648670 | None:intergenic |
| TGAAGAGGAGGAGCAAGAGA+GGG | 0.576581 | 5.1:-45648103 | MS.gene053769:CDS |
| CATGTCTTGAAGAAGCTGAA+AGG | 0.576740 | 5.1:+45648800 | None:intergenic |
| CTACATTGATGAAAAGTGAA+TGG | 0.578567 | 5.1:+45648489 | None:intergenic |
| AAATGAGCAAACTTGACGTA+AGG | 0.579384 | 5.1:+45648774 | None:intergenic |
| CCACTGAGCCCATTATTCGT+GGG | 0.580098 | 5.1:+45648145 | None:intergenic |
| GGACTTTGATATCATGGAAG+GGG | 0.580763 | 5.1:-45648694 | MS.gene053769:CDS |
| ATATCATGGAAGGGGCCCAA+TGG | 0.582076 | 5.1:-45648686 | MS.gene053769:CDS |
| AGAAACAAAGAACGTGGCAA+TGG | 0.585187 | 5.1:-45648588 | MS.gene053769:CDS |
| CTCCACTCACGGCACCAACA+TGG | 0.585629 | 5.1:-45648937 | MS.gene053769:CDS |
| GTGATGCGAAGATGTGGGCC+CGG | 0.587438 | 5.1:+45648621 | None:intergenic |
| TAGCAGAGTTTGGAGGGCGT+CGG | 0.589407 | 5.1:+45648893 | None:intergenic |
| CTGTTCAAGAAACTGGAAGA+AGG | 0.593746 | 5.1:-45648542 | MS.gene053769:CDS |
| GTTGTACATGACTGGTGAAG+AGG | 0.593787 | 5.1:-45648118 | MS.gene053769:CDS |
| GTTGAAGCTTGTTCGCGGAG+AGG | 0.596988 | 5.1:-45648433 | MS.gene053769:CDS |
| TCAATATCACTTGAGCCAGA+TGG | 0.599918 | 5.1:+45648982 | None:intergenic |
| ATGGGCTAGGAGTTTAGTGG+AGG | 0.599983 | 5.1:-45648181 | MS.gene053769:CDS |
| CCATAAGGAGGTGCACTAGA+CGG | 0.601550 | 5.1:+45649042 | None:intergenic |
| GTGGCCCAGTTGTACATGAC+TGG | 0.604399 | 5.1:-45648126 | MS.gene053769:CDS |
| AATGCAGTGATGCGAAGATG+TGG | 0.609707 | 5.1:+45648615 | None:intergenic |
| CATGTTGGTGCCGTGAGTGG+AGG | 0.611646 | 5.1:+45648938 | None:intergenic |
| TGGACTTTGATATCATGGAA+GGG | 0.613948 | 5.1:-45648695 | MS.gene053769:CDS |
| CGCAGCGAGTCTCTCCATGT+TGG | 0.618231 | 5.1:+45648923 | None:intergenic |
| TGTTAGGTTGGAAATCAAGA+CGG | 0.623526 | 5.1:-45647942 | MS.gene053769:CDS |
| TTGGGCCCATCAGTGATGCA+GGG | 0.625033 | 5.1:-45648284 | MS.gene053769:CDS |
| GTACATGACTGGTGAAGAGG+AGG | 0.631690 | 5.1:-45648115 | MS.gene053769:CDS |
| AAAAGTGAATGGTTGTCCAA+CGG | 0.637307 | 5.1:+45648500 | None:intergenic |
| GAAGAGGAGGAGCAAGAGAG+GGG | 0.643212 | 5.1:-45648102 | MS.gene053769:CDS |
| TTCACCAGTCATGTACAACT+GGG | 0.650625 | 5.1:+45648122 | None:intergenic |
| GAAGCCCGGTAACTAAGATG+TGG | 0.661574 | 5.1:+45648381 | None:intergenic |
| GAGAGTATGTCTGTTTGGTG+GGG | 0.663577 | 5.1:+45648825 | None:intergenic |
| GCTCGTGACATTAGTCGAGG+AGG | 0.670792 | 5.1:-45648310 | MS.gene053769:CDS |
| CCCACGAATAATGGGCTCAG+TGG | 0.676277 | 5.1:-45648145 | MS.gene053769:CDS |
| AAAGCTCGTGACATTAGTCG+AGG | 0.678929 | 5.1:-45648313 | MS.gene053769:CDS |
| ATGCAGTGATGCGAAGATGT+GGG | 0.688648 | 5.1:+45648616 | None:intergenic |
| GTCCAACTCAAATTCGACAA+CGG | 0.690922 | 5.1:-45649096 | MS.gene053769:CDS |
| TAAGGAGGTGCACTAGACGG+AGG | 0.697542 | 5.1:+45649045 | None:intergenic |
| TCTAGTGCACCTCCTTATGG+CGG | 0.711985 | 5.1:-45649039 | MS.gene053769:CDS |
| TGTGGTGACCACAATCAGTG+CGG | 0.712754 | 5.1:+45648868 | None:intergenic |
| CAACTCAAATTCGACAACGG+AGG | 0.712986 | 5.1:-45649093 | MS.gene053769:CDS |
| TTGTCTAGAAACAAAGAACG+TGG | 0.726054 | 5.1:-45648594 | MS.gene053769:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TATTGGGTTTATTTAACGAT+GGG | - | chr5.1:45648996-45649015 | MS.gene053769:CDS | 25.0% |
| ! | TTATTGGGTTTATTTAACGA+TGG | - | chr5.1:45648995-45649014 | MS.gene053769:CDS | 25.0% |
| !! | TGGTTTTCCTATGAATAAAT+GGG | - | chr5.1:45648796-45648815 | MS.gene053769:CDS | 25.0% |
| AAAGGAGTTAACATAAGCTA+TGG | - | chr5.1:45648950-45648969 | MS.gene053769:CDS | 30.0% | |
| ATAACAACTTTGCTTGACAA+TGG | + | chr5.1:45648979-45648998 | None:intergenic | 30.0% | |
| CTACATTGATGAAAAGTGAA+TGG | + | chr5.1:45648509-45648528 | None:intergenic | 30.0% | |
| TCTATTGCTTCATTCTTGAA+CGG | - | chr5.1:45648641-45648660 | MS.gene053769:CDS | 30.0% | |
| TTGTCAAGCAAAGTTGTTAT+TGG | - | chr5.1:45648979-45648998 | MS.gene053769:CDS | 30.0% | |
| ! | TGTCAAGCAAAGTTGTTATT+GGG | - | chr5.1:45648980-45648999 | MS.gene053769:CDS | 30.0% |
| !! | CATTCACTTTTCATCAATGT+AGG | - | chr5.1:45648507-45648526 | MS.gene053769:CDS | 30.0% |
| !! | CTGGTTTTCCTATGAATAAA+TGG | - | chr5.1:45648795-45648814 | MS.gene053769:CDS | 30.0% |
| !!! | TTAGTGGAGGAAGTATTTTT+AGG | - | chr5.1:45648827-45648846 | MS.gene053769:CDS | 30.0% |
| AAAAGTGAATGGTTGTCCAA+CGG | + | chr5.1:45648498-45648517 | None:intergenic | 35.0% | |
| AAATGAGCAAACTTGACGTA+AGG | + | chr5.1:45648224-45648243 | None:intergenic | 35.0% | |
| AAGCTGTTACTCATGAAAGA+AGG | - | chr5.1:45648267-45648286 | MS.gene053769:CDS | 35.0% | |
| AGAGTTGGGTAACAATAAGT+TGG | - | chr5.1:45649030-45649049 | MS.gene053769:CDS | 35.0% | |
| AGCTGTTACTCATGAAAGAA+GGG | - | chr5.1:45648268-45648287 | MS.gene053769:CDS | 35.0% | |
| ATTTAACGATGGGTATAGAG+TGG | - | chr5.1:45649006-45649025 | MS.gene053769:CDS | 35.0% | |
| ATTTGCCACATCTTAGTTAC+CGG | - | chr5.1:45648609-45648628 | MS.gene053769:CDS | 35.0% | |
| TGGACTTTGATATCATGGAA+GGG | - | chr5.1:45648300-45648319 | MS.gene053769:CDS | 35.0% | |
| TTGTCTAGAAACAAAGAACG+TGG | - | chr5.1:45648401-45648420 | MS.gene053769:CDS | 35.0% | |
| TTTCATGAGTAACAGCTTCA+AGG | + | chr5.1:45648265-45648284 | None:intergenic | 35.0% | |
| ! | CACTTTTCATCAATGTAGGT+TGG | - | chr5.1:45648511-45648530 | MS.gene053769:CDS | 35.0% |
| ! | TGGCTCAAGTGATATTGATT+CGG | - | chr5.1:45648018-45648037 | MS.gene053769:CDS | 35.0% |
| ! | TTCCTATGAATAAATGGGCT+AGG | - | chr5.1:45648801-45648820 | MS.gene053769:CDS | 35.0% |
| !! | ACAATAAGTTGGTGTTAGGT+TGG | - | chr5.1:45649041-45649060 | MS.gene053769:CDS | 35.0% |
| !! | ATTTTTAGGCCCACGAATAA+TGG | - | chr5.1:45648841-45648860 | MS.gene053769:CDS | 35.0% |
| !! | CATAGTGGACTTTGATATCA+TGG | - | chr5.1:45648295-45648314 | MS.gene053769:CDS | 35.0% |
| !! | GGTAACAATAAGTTGGTGTT+AGG | - | chr5.1:45649037-45649056 | MS.gene053769:CDS | 35.0% |
| !! | TGTTAGGTTGGAAATCAAGA+CGG | - | chr5.1:45649053-45649072 | MS.gene053769:CDS | 35.0% |
| !! | TTTTTAGGCCCACGAATAAT+GGG | - | chr5.1:45648842-45648861 | MS.gene053769:CDS | 35.0% |
| AGAAACAAAGAACGTGGCAA+TGG | - | chr5.1:45648407-45648426 | MS.gene053769:CDS | 40.0% | |
| AGTTTCTTGAACAGTGGCAA+AGG | + | chr5.1:45648447-45648466 | None:intergenic | 40.0% | |
| ATTGAATGAGTGAAGCCCAT+TGG | + | chr5.1:45648328-45648347 | None:intergenic | 40.0% | |
| CATGTCTTGAAGAAGCTGAA+AGG | + | chr5.1:45648198-45648217 | None:intergenic | 40.0% | |
| CTCCTAGCCCATTTATTCAT+AGG | + | chr5.1:45648806-45648825 | None:intergenic | 40.0% | |
| CTGTTCAAGAAACTGGAAGA+AGG | - | chr5.1:45648453-45648472 | MS.gene053769:CDS | 40.0% | |
| GGACTTTGATATCATGGAAG+GGG | - | chr5.1:45648301-45648320 | MS.gene053769:CDS | 40.0% | |
| GTCCAACTCAAATTCGACAA+CGG | - | chr5.1:45647899-45647918 | MS.gene053769:CDS | 40.0% | |
| GTGGACTTTGATATCATGGA+AGG | - | chr5.1:45648299-45648318 | MS.gene053769:CDS | 40.0% | |
| TAACAGCTTCAAGGATAGCT+TGG | + | chr5.1:45648256-45648275 | None:intergenic | 40.0% | |
| TCAATATCACTTGAGCCAGA+TGG | + | chr5.1:45648016-45648035 | None:intergenic | 40.0% | |
| TCACTTTCATCGCGAAAAGA+AGG | - | chr5.1:45648347-45648366 | MS.gene053769:CDS | 40.0% | |
| TCTTCCAGTTTCTTGAACAG+TGG | + | chr5.1:45648453-45648472 | None:intergenic | 40.0% | |
| TGAAAGAAGGGTTCACATAG+TGG | - | chr5.1:45648280-45648299 | MS.gene053769:CDS | 40.0% | |
| TTCACCAGTCATGTACAACT+GGG | + | chr5.1:45648876-45648895 | None:intergenic | 40.0% | |
| TTGAATGAGTGAAGCCCATT+GGG | + | chr5.1:45648327-45648346 | None:intergenic | 40.0% | |
| TTTGCCACATCTTAGTTACC+GGG | - | chr5.1:45648610-45648629 | MS.gene053769:CDS | 40.0% | |
| TTTGCCACTGTTCAAGAAAC+TGG | - | chr5.1:45648446-45648465 | MS.gene053769:CDS | 40.0% | |
| ! | AAGCAATAGAATCTGAAGCC+CGG | + | chr5.1:45648631-45648650 | None:intergenic | 40.0% |
| ! | ACTCTTGTTTGTGCCTGTTA+GGG | + | chr5.1:45647991-45648010 | None:intergenic | 40.0% |
| ! | CGTCAAGTTTGCTCATTTCA+CGG | - | chr5.1:45648226-45648245 | MS.gene053769:CDS | 40.0% |
| ! | TGAGAGTATGTCTGTTTGGT+GGG | + | chr5.1:45648174-45648193 | None:intergenic | 40.0% |
| !! | AGTGATATTGATTCGGCTCA+AGG | - | chr5.1:45648025-45648044 | MS.gene053769:CDS | 40.0% |
| !! | TAAATGGGCTAGGAGTTTAG+TGG | - | chr5.1:45648811-45648830 | MS.gene053769:CDS | 40.0% |
| AAAGCTCGTGACATTAGTCG+AGG | - | chr5.1:45648682-45648701 | MS.gene053769:CDS | 45.0% | |
| AATGCAGTGATGCGAAGATG+TGG | + | chr5.1:45648383-45648402 | None:intergenic | 45.0% | |
| ACAAACCCTGCATCACTGAT+GGG | + | chr5.1:45648719-45648738 | None:intergenic | 45.0% | |
| ACATTAGTCGAGGAGGAAGT+TGG | - | chr5.1:45648692-45648711 | MS.gene053769:CDS | 45.0% | |
| ATCAGTGATGCAGGGTTTGT+GGG | - | chr5.1:45648719-45648738 | MS.gene053769:CDS | 45.0% | |
| ATGCAGTGATGCGAAGATGT+GGG | + | chr5.1:45648382-45648401 | None:intergenic | 45.0% | |
| CAACTCAAATTCGACAACGG+AGG | - | chr5.1:45647902-45647921 | MS.gene053769:CDS | 45.0% | |
| CACAAACAAGAGTCACCATC+TGG | - | chr5.1:45647998-45648017 | MS.gene053769:CDS | 45.0% | |
| CATTAGTCGAGGAGGAAGTT+GGG | - | chr5.1:45648693-45648712 | MS.gene053769:CDS | 45.0% | |
| CTCCGTTGTCGAATTTGAGT+TGG | + | chr5.1:45647904-45647923 | None:intergenic | 45.0% | |
| CTTCACCAGTCATGTACAAC+TGG | + | chr5.1:45648877-45648896 | None:intergenic | 45.0% | |
| GGGTATAGAGTGGAAGAGTT+GGG | - | chr5.1:45649016-45649035 | MS.gene053769:CDS | 45.0% | |
| GTTGTACATGACTGGTGAAG+AGG | - | chr5.1:45648877-45648896 | MS.gene053769:CDS | 45.0% | |
| TGGGTATAGAGTGGAAGAGT+TGG | - | chr5.1:45649015-45649034 | MS.gene053769:CDS | 45.0% | |
| ! | AGGCTGAGAGTATGTCTGTT+TGG | + | chr5.1:45648178-45648197 | None:intergenic | 45.0% |
| ! | AGGGTTTGTGGGTTTGTTCA+TGG | - | chr5.1:45648730-45648749 | MS.gene053769:CDS | 45.0% |
| ! | CTGAGAGTATGTCTGTTTGG+TGG | + | chr5.1:45648175-45648194 | None:intergenic | 45.0% |
| ! | GACTCTTGTTTGTGCCTGTT+AGG | + | chr5.1:45647992-45648011 | None:intergenic | 45.0% |
| ! | GAGAGTATGTCTGTTTGGTG+GGG | + | chr5.1:45648173-45648192 | None:intergenic | 45.0% |
| ! | GGTTGCTTTCTGCTTCTGTT+TGG | - | chr5.1:45649074-45649093 | MS.gene053769:CDS | 45.0% |
| ! | TCTTCGTTGAAGCTTGTTCG+CGG | - | chr5.1:45648557-45648576 | MS.gene053769:CDS | 45.0% |
| ! | TTCATTCTTGAACGGTGCCA+AGG | - | chr5.1:45648649-45648668 | MS.gene053769:CDS | 45.0% |
| !! | GAGCTTTGTTCCTAACTCCT+TGG | + | chr5.1:45648669-45648688 | None:intergenic | 45.0% |
| AAATTCGACAACGGAGGAGG+AGG | - | chr5.1:45647908-45647927 | MS.gene053769:CDS | 50.0% | |
| AGCGATGTATGACTCGTTCG+AGG | - | chr5.1:45648772-45648791 | MS.gene053769:CDS | 50.0% | |
| ATATCATGGAAGGGGCCCAA+TGG | - | chr5.1:45648309-45648328 | MS.gene053769:CDS | 50.0% | |
| ATGTATGACTCGTTCGAGGC+TGG | - | chr5.1:45648776-45648795 | MS.gene053769:CDS | 50.0% | |
| CACAAACCCTGCATCACTGA+TGG | + | chr5.1:45648720-45648739 | None:intergenic | 50.0% | |
| CACAAACTCTGCCTTCTCAC+TGG | - | chr5.1:45648146-45648165 | MS.gene053769:CDS | 50.0% | |
| CAGTGAGAAGGCAGAGTTTG+TGG | + | chr5.1:45648148-45648167 | None:intergenic | 50.0% | |
| CAGTGCGGTTTAGCAGAGTT+TGG | + | chr5.1:45648115-45648134 | None:intergenic | 50.0% | |
| CATCAGTGATGCAGGGTTTG+TGG | - | chr5.1:45648718-45648737 | MS.gene053769:CDS | 50.0% | |
| CCACTGAGCCCATTATTCGT+GGG | + | chr5.1:45648853-45648872 | None:intergenic | 50.0% | |
| CTCAAATTCGACAACGGAGG+AGG | - | chr5.1:45647905-45647924 | MS.gene053769:CDS | 50.0% | |
| GAAGCCCGGTAACTAAGATG+TGG | + | chr5.1:45648617-45648636 | None:intergenic | 50.0% | |
| GACTTAGTGTCCTCCACTCA+CGG | - | chr5.1:45648047-45648066 | MS.gene053769:CDS | 50.0% | |
| GAGGAGGAGGATGACAGAAA+GGG | - | chr5.1:45647927-45647946 | MS.gene053769:CDS | 50.0% | |
| GCGGTTTAGCAGAGTTTGGA+GGG | + | chr5.1:45648111-45648130 | None:intergenic | 50.0% | |
| GTACATGACTGGTGAAGAGG+AGG | - | chr5.1:45648880-45648899 | MS.gene053769:CDS | 50.0% | |
| TATCATGGAAGGGGCCCAAT+GGG | - | chr5.1:45648310-45648329 | MS.gene053769:CDS | 50.0% | |
| TCTAGTGCACCTCCTTATGG+CGG | - | chr5.1:45647956-45647975 | MS.gene053769:CDS | 50.0% | |
| TGAAGAGGAGGAGCAAGAGA+GGG | - | chr5.1:45648892-45648911 | MS.gene053769:CDS | 50.0% | |
| TGCGGTTTAGCAGAGTTTGG+AGG | + | chr5.1:45648112-45648131 | None:intergenic | 50.0% | |
| TGTGGTGACCACAATCAGTG+CGG | + | chr5.1:45648130-45648149 | None:intergenic | 50.0% | |
| TTGGGTGTGGAAGGGTTCAA+AGG | - | chr5.1:45648932-45648951 | MS.gene053769:CDS | 50.0% | |
| ! | CCATAAGGAGGTGCACTAGA+CGG | + | chr5.1:45647956-45647975 | None:intergenic | 50.0% |
| ! | TTGAACGGTGCCAAGGAGTT+AGG | - | chr5.1:45648656-45648675 | MS.gene053769:CDS | 50.0% |
| !! | ACAGCTTTTGCTGCTTCCGT+TGG | - | chr5.1:45648479-45648498 | MS.gene053769:CDS | 50.0% |
| !! | ATGGGCTAGGAGTTTAGTGG+AGG | - | chr5.1:45648814-45648833 | MS.gene053769:CDS | 50.0% |
| !! | CTGCTAAACCGCACTGATTG+TGG | - | chr5.1:45648119-45648138 | MS.gene053769:CDS | 50.0% |
| AGCAAGAGAGGGGTTCTTGG+GGG | - | chr5.1:45648903-45648922 | MS.gene053769:CDS | 55.0% | |
| AGGAGCAAGAGAGGGGTTCT+TGG | - | chr5.1:45648900-45648919 | MS.gene053769:CDS | 55.0% | |
| ATCGCGAAAAGAAGGCCTGC+CGG | - | chr5.1:45648355-45648374 | MS.gene053769:CDS | 55.0% | |
| CCGTCTAGTGCACCTCCTTA+TGG | - | chr5.1:45647953-45647972 | MS.gene053769:CDS | 55.0% | |
| GAAGAGGAGGAGCAAGAGAG+GGG | - | chr5.1:45648893-45648912 | MS.gene053769:CDS | 55.0% | |
| GAGCAAGAGAGGGGTTCTTG+GGG | - | chr5.1:45648902-45648921 | MS.gene053769:CDS | 55.0% | |
| GCCACTGAGCCCATTATTCG+TGG | + | chr5.1:45648854-45648873 | None:intergenic | 55.0% | |
| GCTCGTGACATTAGTCGAGG+AGG | - | chr5.1:45648685-45648704 | MS.gene053769:CDS | 55.0% | |
| GGAGCAAGAGAGGGGTTCTT+GGG | - | chr5.1:45648901-45648920 | MS.gene053769:CDS | 55.0% | |
| GGAGGAGGAGGATGACAGAA+AGG | - | chr5.1:45647926-45647945 | MS.gene053769:CDS | 55.0% | |
| GTGAAGAGGAGGAGCAAGAG+AGG | - | chr5.1:45648891-45648910 | MS.gene053769:CDS | 55.0% | |
| GTGGCCCAGTTGTACATGAC+TGG | - | chr5.1:45648869-45648888 | MS.gene053769:CDS | 55.0% | |
| TTGGGCCCATCAGTGATGCA+GGG | - | chr5.1:45648711-45648730 | MS.gene053769:CDS | 55.0% | |
| TTTGGTGGGGTCCAGTGAGA+AGG | + | chr5.1:45648160-45648179 | None:intergenic | 55.0% | |
| ! | GTTGAAGCTTGTTCGCGGAG+AGG | - | chr5.1:45648562-45648581 | MS.gene053769:CDS | 55.0% |
| ! | TAAGGAGGTGCACTAGACGG+AGG | + | chr5.1:45647953-45647972 | None:intergenic | 55.0% |
| ! | TAGCAGAGTTTGGAGGGCGT+CGG | + | chr5.1:45648105-45648124 | None:intergenic | 55.0% |
| !! | CCCACGAATAATGGGCTCAG+TGG | - | chr5.1:45648850-45648869 | MS.gene053769:CDS | 55.0% |
| CGCAGCGAGTCTCTCCATGT+TGG | + | chr5.1:45648075-45648094 | None:intergenic | 60.0% | |
| CTCCACTCACGGCACCAACA+TGG | - | chr5.1:45648058-45648077 | MS.gene053769:CDS | 60.0% | |
| GCAAGAGAGGGGTTCTTGGG+GGG | - | chr5.1:45648904-45648923 | MS.gene053769:CDS | 60.0% | |
| GCTTGTTCGCGGAGAGGCTT+TGG | - | chr5.1:45648568-45648587 | MS.gene053769:CDS | 60.0% | |
| GGGAGTGGTTGGGTGTGGAA+GGG | - | chr5.1:45648924-45648943 | MS.gene053769:CDS | 60.0% | |
| GGTTCTTGGGGGGAGTGGTT+GGG | - | chr5.1:45648914-45648933 | MS.gene053769:CDS | 60.0% | |
| GTGATGCGAAGATGTGGGCC+CGG | + | chr5.1:45648377-45648396 | None:intergenic | 60.0% | |
| GTTGGGCCCATCAGTGATGC+AGG | - | chr5.1:45648710-45648729 | MS.gene053769:CDS | 60.0% | |
| TCGCGAAAAGAAGGCCTGCC+GGG | - | chr5.1:45648356-45648375 | MS.gene053769:CDS | 60.0% | |
| TTCGACAACGGAGGAGGAGG+AGG | - | chr5.1:45647911-45647930 | MS.gene053769:CDS | 60.0% | |
| !! | CATGTTGGTGCCGTGAGTGG+AGG | + | chr5.1:45648060-45648079 | None:intergenic | 60.0% |
| !! | CTCCATGTTGGTGCCGTGAG+TGG | + | chr5.1:45648063-45648082 | None:intergenic | 60.0% |
| AGAGGGGTTCTTGGGGGGAG+TGG | - | chr5.1:45648909-45648928 | MS.gene053769:CDS | 65.0% | |
| GACAACGGAGGAGGAGGAGG+AGG | - | chr5.1:45647914-45647933 | MS.gene053769:CDS | 65.0% | |
| GCACCTCCTTATGGCGGCAG+CGG | - | chr5.1:45647962-45647981 | MS.gene053769:CDS | 65.0% | |
| GGGGAGTGGTTGGGTGTGGA+AGG | - | chr5.1:45648923-45648942 | MS.gene053769:CDS | 65.0% | |
| GGGTTCTTGGGGGGAGTGGT+TGG | - | chr5.1:45648913-45648932 | MS.gene053769:CDS | 65.0% | |
| TTGGGGGGAGTGGTTGGGTG+TGG | - | chr5.1:45648919-45648938 | MS.gene053769:CDS | 65.0% | |
| CCTCCGCTGCCGCCATAAGG+AGG | + | chr5.1:45647968-45647987 | None:intergenic | 70.0% | |
| CCTCCTTATGGCGGCAGCGG+AGG | - | chr5.1:45647965-45647984 | MS.gene053769:CDS | 70.0% | |
| TGCGAAGATGTGGGCCCGGC+AGG | + | chr5.1:45648373-45648392 | None:intergenic | 70.0% | |
| GCGGCAGCGGAGGCCCTAAC+AGG | - | chr5.1:45647975-45647994 | MS.gene053769:CDS | 75.0% | |
| GGGCCTCCGCTGCCGCCATA+AGG | + | chr5.1:45647971-45647990 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 45647888 | 45649129 | 45647888 | ID=MS.gene053769 |
| chr5.1 | mRNA | 45647888 | 45649129 | 45647888 | ID=MS.gene053769.t1;Parent=MS.gene053769 |
| chr5.1 | exon | 45647888 | 45649129 | 45647888 | ID=MS.gene053769.t1.exon1;Parent=MS.gene053769.t1 |
| chr5.1 | CDS | 45647888 | 45649129 | 45647888 | ID=cds.MS.gene053769.t1;Parent=MS.gene053769.t1 |
| Gene Sequence |
| Protein sequence |