Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053864.t1 | XP_024634541.1 | 69.2 | 727 | 66 | 1 | 1 | 569 | 1 | 727 | 5.40E-281 | 976.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053864.t1 | Q9SZL8 | 34.0 | 329 | 207 | 5 | 149 | 471 | 350 | 674 | 1.5e-50 | 202.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053864.t1 | A0A2K3NAQ1 | 74.1 | 425 | 102 | 2 | 153 | 569 | 1 | 425 | 7.3e-187 | 663.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene053864.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053864.t1 | MTR_8g465780 | 66.912 | 136 | 45 | 0 | 246 | 381 | 1 | 136 | 3.16e-64 | 208 |
| MS.gene053864.t1 | MTR_6g060410 | 84.071 | 113 | 18 | 0 | 1 | 113 | 61 | 173 | 5.56e-61 | 200 |
| MS.gene053864.t1 | MTR_4g080290 | 85.714 | 105 | 15 | 0 | 1 | 105 | 1 | 105 | 3.72e-58 | 189 |
| MS.gene053864.t1 | MTR_1g013060 | 64.444 | 135 | 47 | 1 | 14 | 148 | 11 | 144 | 6.51e-49 | 169 |
| MS.gene053864.t1 | MTR_6g445180 | 65.625 | 128 | 39 | 3 | 441 | 564 | 15 | 141 | 6.22e-45 | 156 |
| MS.gene053864.t1 | MTR_6g022070 | 30.409 | 171 | 112 | 3 | 169 | 338 | 1 | 165 | 3.87e-16 | 80.5 |
| MS.gene053864.t1 | MTR_4g067290 | 35.714 | 126 | 69 | 4 | 11 | 134 | 41 | 156 | 7.20e-13 | 68.9 |
| MS.gene053864.t1 | MTR_4g067290 | 35.714 | 126 | 69 | 4 | 11 | 134 | 41 | 156 | 7.43e-13 | 68.9 |
| MS.gene053864.t1 | MTR_4g067290 | 35.714 | 126 | 69 | 4 | 11 | 134 | 61 | 176 | 1.00e-12 | 68.9 |
| MS.gene053864.t1 | MTR_4g067290 | 35.714 | 126 | 69 | 4 | 11 | 134 | 61 | 176 | 1.01e-12 | 68.9 |
| MS.gene053864.t1 | MTR_4g067290 | 35.714 | 126 | 69 | 4 | 11 | 134 | 59 | 174 | 1.13e-12 | 68.6 |
| MS.gene053864.t1 | MTR_4g067290 | 35.714 | 126 | 69 | 4 | 11 | 134 | 101 | 216 | 1.17e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053864.t1 | AT4G38180 | 34.043 | 329 | 207 | 5 | 149 | 471 | 350 | 674 | 7.66e-55 | 199 |
| MS.gene053864.t1 | AT4G15090 | 31.633 | 294 | 197 | 3 | 142 | 435 | 319 | 608 | 2.61e-45 | 171 |
| MS.gene053864.t1 | AT4G15090 | 31.633 | 294 | 197 | 3 | 142 | 435 | 319 | 608 | 2.61e-45 | 171 |
| MS.gene053864.t1 | AT4G15090 | 31.633 | 294 | 197 | 3 | 142 | 435 | 319 | 608 | 2.61e-45 | 171 |
| MS.gene053864.t1 | AT4G15090 | 31.633 | 294 | 197 | 3 | 142 | 435 | 319 | 608 | 2.61e-45 | 171 |
| MS.gene053864.t1 | AT4G15090 | 31.633 | 294 | 197 | 3 | 142 | 435 | 319 | 608 | 2.61e-45 | 171 |
| MS.gene053864.t1 | AT3G06250 | 31.804 | 327 | 213 | 5 | 134 | 460 | 411 | 727 | 2.23e-43 | 166 |
| MS.gene053864.t1 | AT3G06250 | 31.804 | 327 | 213 | 5 | 134 | 460 | 411 | 727 | 2.23e-43 | 166 |
| MS.gene053864.t1 | AT3G06250 | 31.804 | 327 | 213 | 5 | 134 | 460 | 411 | 727 | 2.23e-43 | 166 |
| MS.gene053864.t1 | AT4G38170 | 30.796 | 289 | 197 | 3 | 147 | 435 | 113 | 398 | 3.77e-41 | 156 |
| MS.gene053864.t1 | AT5G18960 | 31.193 | 327 | 215 | 5 | 134 | 460 | 435 | 751 | 4.37e-41 | 159 |
| MS.gene053864.t1 | AT5G18960 | 31.193 | 327 | 215 | 5 | 134 | 460 | 435 | 751 | 4.37e-41 | 159 |
| MS.gene053864.t1 | AT3G22170 | 29.617 | 287 | 198 | 3 | 149 | 435 | 335 | 617 | 5.55e-41 | 159 |
| MS.gene053864.t1 | AT3G22170 | 29.617 | 287 | 198 | 3 | 149 | 435 | 335 | 617 | 5.55e-41 | 159 |
| MS.gene053864.t1 | AT2G27110 | 28.037 | 321 | 224 | 3 | 142 | 462 | 145 | 458 | 7.17e-41 | 158 |
| MS.gene053864.t1 | AT2G27110 | 28.037 | 321 | 224 | 3 | 142 | 462 | 290 | 603 | 8.73e-41 | 158 |
| MS.gene053864.t1 | AT2G27110 | 28.037 | 321 | 224 | 3 | 142 | 462 | 290 | 603 | 8.73e-41 | 158 |
| MS.gene053864.t1 | AT2G32250 | 30.000 | 290 | 199 | 3 | 147 | 436 | 227 | 512 | 1.05e-38 | 152 |
| MS.gene053864.t1 | AT2G32250 | 30.000 | 290 | 199 | 3 | 147 | 436 | 268 | 553 | 1.09e-38 | 152 |
| MS.gene053864.t1 | AT2G32250 | 30.000 | 290 | 199 | 3 | 147 | 436 | 227 | 512 | 1.13e-38 | 152 |
| MS.gene053864.t1 | AT2G32250 | 30.000 | 290 | 199 | 3 | 147 | 436 | 268 | 553 | 1.41e-38 | 152 |
| MS.gene053864.t1 | AT2G32250 | 30.000 | 290 | 199 | 3 | 147 | 436 | 268 | 553 | 1.41e-38 | 152 |
| MS.gene053864.t1 | AT2G32250 | 30.000 | 290 | 199 | 3 | 147 | 436 | 268 | 553 | 1.41e-38 | 152 |
| MS.gene053864.t1 | AT2G32250 | 30.000 | 290 | 199 | 3 | 147 | 436 | 268 | 553 | 1.48e-38 | 151 |
| MS.gene053864.t1 | AT2G32250 | 30.000 | 290 | 199 | 3 | 147 | 436 | 268 | 553 | 1.48e-38 | 151 |
| MS.gene053864.t1 | AT4G19990 | 29.085 | 306 | 211 | 4 | 139 | 442 | 207 | 508 | 8.64e-37 | 145 |
| MS.gene053864.t1 | AT4G19990 | 29.085 | 306 | 211 | 4 | 139 | 442 | 264 | 565 | 1.11e-36 | 145 |
| MS.gene053864.t1 | AT4G19990 | 29.085 | 306 | 211 | 4 | 139 | 442 | 264 | 565 | 1.25e-36 | 145 |
| MS.gene053864.t1 | AT4G19990 | 29.085 | 306 | 211 | 4 | 139 | 442 | 264 | 565 | 1.25e-36 | 145 |
| MS.gene053864.t1 | AT4G19990 | 29.085 | 306 | 211 | 4 | 139 | 442 | 278 | 579 | 1.42e-36 | 145 |
| MS.gene053864.t1 | AT4G19990 | 29.085 | 306 | 211 | 4 | 139 | 442 | 264 | 565 | 1.76e-36 | 145 |
| MS.gene053864.t1 | AT4G19990 | 29.085 | 306 | 211 | 4 | 139 | 442 | 264 | 565 | 1.76e-36 | 145 |
| MS.gene053864.t1 | AT1G80010 | 28.994 | 338 | 224 | 8 | 147 | 474 | 370 | 701 | 1.22e-35 | 142 |
| MS.gene053864.t1 | AT1G52520 | 31.419 | 296 | 185 | 7 | 158 | 442 | 356 | 644 | 9.59e-35 | 139 |
| MS.gene053864.t1 | AT1G76320 | 28.479 | 309 | 212 | 6 | 134 | 440 | 248 | 549 | 3.31e-32 | 132 |
| MS.gene053864.t1 | AT1G76320 | 29.054 | 296 | 201 | 6 | 147 | 440 | 261 | 549 | 5.41e-32 | 131 |
| MS.gene053864.t1 | AT1G76320 | 29.054 | 296 | 201 | 6 | 147 | 440 | 261 | 549 | 5.41e-32 | 131 |
| MS.gene053864.t1 | AT1G76320 | 29.054 | 296 | 201 | 6 | 147 | 440 | 261 | 549 | 5.53e-32 | 131 |
| MS.gene053864.t1 | AT5G28530 | 26.962 | 293 | 203 | 7 | 140 | 431 | 271 | 553 | 8.58e-25 | 109 |
| MS.gene053864.t1 | AT5G28530 | 26.962 | 293 | 203 | 7 | 140 | 431 | 334 | 616 | 9.51e-25 | 109 |
| MS.gene053864.t1 | AT5G28530 | 27.645 | 293 | 197 | 8 | 140 | 431 | 271 | 549 | 3.22e-24 | 107 |
| MS.gene053864.t1 | AT5G28530 | 27.645 | 293 | 197 | 8 | 140 | 431 | 334 | 612 | 4.00e-24 | 107 |
| MS.gene053864.t1 | AT5G28530 | 27.645 | 293 | 197 | 8 | 140 | 431 | 334 | 612 | 4.00e-24 | 107 |
| MS.gene053864.t1 | AT1G10240 | 24.661 | 369 | 252 | 8 | 115 | 476 | 296 | 645 | 6.63e-23 | 103 |
| MS.gene053864.t1 | AT1G10240 | 24.661 | 369 | 252 | 8 | 115 | 476 | 296 | 645 | 6.63e-23 | 103 |
Find 88 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTAGTCTTTGCAAATTT+TGG | 0.090976 | 5.3:-44140900 | None:intergenic |
| AAATTTCTTCTTGTGTTAAA+TGG | 0.135498 | 5.3:+44140765 | MS.gene053864:CDS |
| ATGTTAACTTGGTTGAATTT+TGG | 0.201090 | 5.3:+44140202 | MS.gene053864:CDS |
| TTCTACTTCGTCAGAAATAT+TGG | 0.214931 | 5.3:-44140868 | None:intergenic |
| ATATATTTCAACATGAATTA+TGG | 0.225211 | 5.3:+44140367 | MS.gene053864:CDS |
| TTGCTCATGCAAAATGTTTC+AGG | 0.233582 | 5.3:+44140524 | MS.gene053864:CDS |
| TTTAATTCATCATCACAATT+TGG | 0.253101 | 5.3:-44138923 | None:intergenic |
| TTGAGTTAGAAAAGAATAAA+TGG | 0.272170 | 5.3:+44140046 | MS.gene053864:CDS |
| GCAATTATGAAGATGATCTT+TGG | 0.287007 | 5.3:-44141037 | None:intergenic |
| AGGACAGATGATTTGATTCT+TGG | 0.289591 | 5.3:+44140843 | MS.gene053864:CDS |
| AAGTTTCAAGTCATGTGTTT+GGG | 0.313111 | 5.3:+44139969 | MS.gene053864:CDS |
| TTCTAAACCAAAACTATTGT+TGG | 0.324685 | 5.3:+44140293 | MS.gene053864:CDS |
| CCACGTTCCAACAATAGTTT+TGG | 0.324928 | 5.3:-44140300 | None:intergenic |
| CAATTATGAAGATGATCTTT+GGG | 0.328011 | 5.3:-44141036 | None:intergenic |
| AATTCAACCAAGTTAACATT+AGG | 0.328343 | 5.3:-44140198 | None:intergenic |
| AAATTGTGATGATGAATTAA+AGG | 0.328661 | 5.3:+44138925 | MS.gene053864:CDS |
| AATTTCTTCTTGTGTTAAAT+GGG | 0.332422 | 5.3:+44140766 | MS.gene053864:CDS |
| AAAGTTTCAAGTCATGTGTT+TGG | 0.339166 | 5.3:+44139968 | MS.gene053864:CDS |
| GAAAGTGAGAATTCTTTCTA+TGG | 0.344600 | 5.3:+44140162 | MS.gene053864:CDS |
| CTATTCACAATGTACTTACT+TGG | 0.362850 | 5.3:-44140609 | None:intergenic |
| CAAGTCTCTTCAAACTCATT+TGG | 0.372368 | 5.3:-44140003 | None:intergenic |
| TCCTTACCATCCTTCTCATT+CGG | 0.392151 | 5.3:-44139109 | None:intergenic |
| CTTAGAAACGGTCTCTTCAT+AGG | 0.411850 | 5.3:-44139277 | None:intergenic |
| CTATGAAGAGACCGTTTCTA+AGG | 0.416138 | 5.3:+44139278 | MS.gene053864:CDS |
| CAAATGAGTTTGAAGAGACT+TGG | 0.432734 | 5.3:+44140004 | MS.gene053864:CDS |
| AAAGTGTCTTTGAAATATGT+TGG | 0.433279 | 5.3:-44140105 | None:intergenic |
| GGACAGATGATTTGATTCTT+GGG | 0.434817 | 5.3:+44140844 | MS.gene053864:CDS |
| CAAGTAAGTACATTGTGAAT+AGG | 0.442114 | 5.3:+44140610 | MS.gene053864:CDS |
| TCTAAATCCTAATGTTAACT+TGG | 0.442556 | 5.3:+44140191 | MS.gene053864:CDS |
| AATAGAAGCGCAACGACATA+AGG | 0.451925 | 5.3:+44140242 | MS.gene053864:CDS |
| GAAAATAAGAAAGATGAAGA+TGG | 0.456611 | 5.3:+44140414 | MS.gene053864:CDS |
| GGATTGCATGCGTGGATTGT+GGG | 0.462406 | 5.3:+44140388 | MS.gene053864:CDS |
| CATAGCTGTGTGGAGAAAGC+TGG | 0.465632 | 5.3:+44140729 | MS.gene053864:CDS |
| AAGTGTCTTTGAAATATGTT+GGG | 0.467879 | 5.3:-44140104 | None:intergenic |
| TGATCGGTTATTATAAGAGT+TGG | 0.470629 | 5.3:-44139814 | None:intergenic |
| CCAAAATTTGCAAAGACTAA+AGG | 0.474060 | 5.3:+44140900 | MS.gene053864:CDS |
| AAACAGTTGGACGGATTTGA+AGG | 0.477202 | 5.3:+44140804 | MS.gene053864:CDS |
| AAAATAAGAAAGATGAAGAT+GGG | 0.489609 | 5.3:+44140415 | MS.gene053864:CDS |
| CTGTCAAGGTTAGAAGAAGA+AGG | 0.491761 | 5.3:+44139146 | MS.gene053864:CDS |
| TGCAAAATGTTTCAGGCTGA+AGG | 0.500454 | 5.3:+44140531 | MS.gene053864:CDS |
| GTATTTGATATGTTAGCAAA+AGG | 0.507514 | 5.3:+44138962 | MS.gene053864:CDS |
| TTCCTTGCAGACCTTAGAAA+CGG | 0.510667 | 5.3:-44139289 | None:intergenic |
| TGACATAGTTGACAATGTCT+TGG | 0.512571 | 5.3:+44140665 | MS.gene053864:CDS |
| TCTCCACACAGCTATGTAAG+TGG | 0.517895 | 5.3:-44140722 | None:intergenic |
| TCTATAGCCACTTTCATGGA+AGG | 0.520478 | 5.3:-44139841 | None:intergenic |
| GTGAAGCAAGTGGATATGTA+TGG | 0.521671 | 5.3:-44139255 | None:intergenic |
| TGGATTGCATGCGTGGATTG+TGG | 0.521916 | 5.3:+44140387 | MS.gene053864:CDS |
| TCAAGATCCTTCCATGAAAG+TGG | 0.522014 | 5.3:+44139834 | MS.gene053864:CDS |
| AGTTGATGTATCTTTGTCCA+TGG | 0.526717 | 5.3:-44138427 | None:intergenic |
| TAAGAAAGATGAAGATGGGA+TGG | 0.532467 | 5.3:+44140419 | MS.gene053864:CDS |
| GTTAGAAAAGAATAAATGGT+TGG | 0.538518 | 5.3:+44140050 | MS.gene053864:CDS |
| GGTAGTGGTAAAAGAATCAA+AGG | 0.539060 | 5.3:+44140921 | MS.gene053864:CDS |
| GTTAAATGGGGCTGTTAACA+TGG | 0.541401 | 5.3:+44140779 | MS.gene053864:CDS |
| GAATTCATCCTCATCATACA+TGG | 0.541448 | 5.3:-44139941 | None:intergenic |
| GGGTTATTTGCCGAATGAGA+AGG | 0.544911 | 5.3:+44139099 | MS.gene053864:CDS |
| TATGATAATAGTGAGATCAA+TGG | 0.545302 | 5.3:+44140456 | MS.gene053864:CDS |
| AAGAATCAAATCATCTGTCC+TGG | 0.550254 | 5.3:-44140841 | None:intergenic |
| AGAAGGGCTTTAACAAGAGA+AGG | 0.550276 | 5.3:+44139163 | MS.gene053864:CDS |
| GCCGAATGAGAAGGATGGTA+AGG | 0.554460 | 5.3:+44139108 | MS.gene053864:CDS |
| TTTCATGGAAGGATCTTGAT+CGG | 0.556444 | 5.3:-44139830 | None:intergenic |
| ATTTCTTCTTGTGTTAAATG+GGG | 0.557000 | 5.3:+44140767 | MS.gene053864:CDS |
| AATCAAAGGTTGCAAAGAGA+AGG | 0.557097 | 5.3:+44140935 | MS.gene053864:CDS |
| TGAATTATGGATTGCATGCG+TGG | 0.559471 | 5.3:+44140380 | MS.gene053864:CDS |
| GGAGAAAGCTGGAAAAGATA+AGG | 0.561455 | 5.3:+44140740 | MS.gene053864:CDS |
| ATGATCTTTGGGGACAATTG+CGG | 0.570711 | 5.3:-44141025 | None:intergenic |
| GATGAATTAAAGGCTACGGT+TGG | 0.572476 | 5.3:+44138935 | MS.gene053864:CDS |
| TTTGCAAAGACTAAAGGTAG+TGG | 0.573810 | 5.3:+44140906 | MS.gene053864:CDS |
| ACACAAAGTATGTGTCTACA+AGG | 0.578783 | 5.3:-44140558 | None:intergenic |
| AAATGAGTTTGAAGAGACTT+GGG | 0.582686 | 5.3:+44140005 | MS.gene053864:CDS |
| GTAAGTACATTGTGAATAGG+TGG | 0.585422 | 5.3:+44140613 | MS.gene053864:CDS |
| GCAAGAGATGTGTATACTCG+TGG | 0.591502 | 5.3:+44140336 | MS.gene053864:CDS |
| GCAAACTCATTTCTGATGTG+TGG | 0.593693 | 5.3:+44140697 | MS.gene053864:CDS |
| GCAAAGTGAATCTACTGTCA+AGG | 0.595204 | 5.3:+44139132 | MS.gene053864:CDS |
| TGTCAAGGTTAGAAGAAGAA+GGG | 0.596214 | 5.3:+44139147 | MS.gene053864:CDS |
| TGATGATGAATTAAAGGCTA+CGG | 0.598605 | 5.3:+44138931 | MS.gene053864:CDS |
| GACCGTTTCTAAGGTCTGCA+AGG | 0.602665 | 5.3:+44139287 | MS.gene053864:CDS |
| AATTATGAAGATGATCTTTG+GGG | 0.604354 | 5.3:-44141035 | None:intergenic |
| AACAGTTGGACGGATTTGAA+GGG | 0.610026 | 5.3:+44140805 | MS.gene053864:CDS |
| AAGGGAGTTCTAAAAGAACC+AGG | 0.611862 | 5.3:+44140823 | MS.gene053864:CDS |
| CAAGAGATGTGTATACTCGT+GGG | 0.630216 | 5.3:+44140337 | MS.gene053864:CDS |
| CCAAAACTATTGTTGGAACG+TGG | 0.638878 | 5.3:+44140300 | MS.gene053864:CDS |
| CTCTTCATAGGTGAAGCAAG+TGG | 0.639442 | 5.3:-44139265 | None:intergenic |
| TGTTGGAACGTGGTATCGAG+AGG | 0.648329 | 5.3:+44140310 | MS.gene053864:CDS |
| AGTTTCAAGTCATGTGTTTG+GGG | 0.653537 | 5.3:+44139970 | MS.gene053864:CDS |
| TGTTTGAGATTCGAAGCACG+TGG | 0.679560 | 5.3:+44140079 | MS.gene053864:CDS |
| TATTTGCCGAATGAGAAGGA+TGG | 0.700061 | 5.3:+44139103 | MS.gene053864:CDS |
| AGGTGTTTCCATGTATGATG+AGG | 0.710654 | 5.3:+44139933 | MS.gene053864:CDS |
| GAACCACTTACATAGCTGTG+TGG | 0.775450 | 5.3:+44140719 | MS.gene053864:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTTCAACATGAATTA+TGG | + | chr5.3:44140367-44140386 | MS.gene053864:CDS | 15.0% |
| !! | GGAAAACATAATAAATAAAA+AGG | - | chr5.3:44138846-44138865 | None:intergenic | 15.0% |
| !! | TCTTCAATAAAATAATAGAA+AGG | - | chr5.3:44138867-44138886 | None:intergenic | 15.0% |
| !!! | TTTTGATATATTACTTTAGA+AGG | + | chr5.3:44139494-44139513 | MS.gene053864:intron | 15.0% |
| !! | AAAATAAGAAAGATGAAGAT+GGG | + | chr5.3:44140415-44140434 | MS.gene053864:CDS | 20.0% |
| !! | AAATTTCTTCTTGTGTTAAA+TGG | + | chr5.3:44140765-44140784 | MS.gene053864:CDS | 20.0% |
| !! | AACTAATTATAATATACCTG+AGG | - | chr5.3:44138465-44138484 | None:intergenic | 20.0% |
| !! | AATTTCTTCTTGTGTTAAAT+GGG | + | chr5.3:44140766-44140785 | MS.gene053864:CDS | 20.0% |
| !! | AGGAAAAATTATTCCTTATT+TGG | + | chr5.3:44139607-44139626 | MS.gene053864:intron | 20.0% |
| !! | CAGGTATATTATAATTAGTT+TGG | + | chr5.3:44138465-44138484 | MS.gene053864:intron | 20.0% |
| !! | CCAAACTAAGAAAAAAAAAT+AGG | - | chr5.3:44138682-44138701 | None:intergenic | 20.0% |
| !! | TTGAGTTAGAAAAGAATAAA+TGG | + | chr5.3:44140046-44140065 | MS.gene053864:CDS | 20.0% |
| !! | TTTAATTCATCATCACAATT+TGG | - | chr5.3:44138926-44138945 | None:intergenic | 20.0% |
| !!! | AAAAAAGTTTCTGAAAAAGT+AGG | + | chr5.3:44139913-44139932 | MS.gene053864:CDS | 20.0% |
| !!! | AAATTGTGATGATGAATTAA+AGG | + | chr5.3:44138925-44138944 | MS.gene053864:CDS | 20.0% |
| !!! | CCTATTTTTTTTTCTTAGTT+TGG | + | chr5.3:44138679-44138698 | MS.gene053864:intron | 20.0% |
| !!! | GAAAAATTATTCCTTATTTG+GGG | + | chr5.3:44139609-44139628 | MS.gene053864:intron | 20.0% |
| !!! | GGAAAAATTATTCCTTATTT+GGG | + | chr5.3:44139608-44139627 | MS.gene053864:intron | 20.0% |
| !!! | TTTTGTTCCTATTTTTTTGT+TGG | + | chr5.3:44138552-44138571 | MS.gene053864:intron | 20.0% |
| ! | AAAAAAAGCAAGACTTTGTA+AGG | + | chr5.3:44140974-44140993 | MS.gene053864:CDS | 25.0% |
| ! | AATTCAACCAAGTTAACATT+AGG | - | chr5.3:44140201-44140220 | None:intergenic | 25.0% |
| ! | ACAAAAAACAACTATCTCTT+AGG | - | chr5.3:44138538-44138557 | None:intergenic | 25.0% |
| ! | ACTTATTAAAAGAACAGTGT+TGG | + | chr5.3:44139383-44139402 | MS.gene053864:intron | 25.0% |
| ! | AGAAAAGTGATTCATTTGTA+TGG | + | chr5.3:44139752-44139771 | MS.gene053864:intron | 25.0% |
| ! | AGTAGAACCAACAAAAAAAT+AGG | - | chr5.3:44138562-44138581 | None:intergenic | 25.0% |
| ! | ATTCAAAGTCTTTAAATCTC+TGG | - | chr5.3:44139455-44139474 | None:intergenic | 25.0% |
| ! | ATTTCTTCTTGTGTTAAATG+GGG | + | chr5.3:44140767-44140786 | MS.gene053864:CDS | 25.0% |
| ! | CTTATTAAAAGAACAGTGTT+GGG | + | chr5.3:44139384-44139403 | MS.gene053864:intron | 25.0% |
| ! | GAAAATAAGAAAGATGAAGA+TGG | + | chr5.3:44140414-44140433 | MS.gene053864:CDS | 25.0% |
| ! | GTATTTGATATGTTAGCAAA+AGG | + | chr5.3:44138962-44138981 | MS.gene053864:CDS | 25.0% |
| ! | GTTAGAAAAGAATAAATGGT+TGG | + | chr5.3:44140050-44140069 | MS.gene053864:CDS | 25.0% |
| ! | TATGATAATAGTGAGATCAA+TGG | + | chr5.3:44140456-44140475 | MS.gene053864:CDS | 25.0% |
| ! | TCTAAATCCTAATGTTAACT+TGG | + | chr5.3:44140191-44140210 | MS.gene053864:CDS | 25.0% |
| ! | TTATTAAAAGAACAGTGTTG+GGG | + | chr5.3:44139385-44139404 | MS.gene053864:intron | 25.0% |
| ! | TTCTAAACCAAAACTATTGT+TGG | + | chr5.3:44140293-44140312 | MS.gene053864:CDS | 25.0% |
| ! | TTGTCAACTATGTCAAAAAT+AGG | - | chr5.3:44140660-44140679 | None:intergenic | 25.0% |
| !! | AACACTGTTCTTTTAATAAG+TGG | - | chr5.3:44139384-44139403 | None:intergenic | 25.0% |
| !! | ATATTTCAAAGACACTTTTC+TGG | + | chr5.3:44140110-44140129 | MS.gene053864:CDS | 25.0% |
| !! | ATGCAAATGATGTTTTCAAT+TGG | + | chr5.3:44139191-44139210 | MS.gene053864:CDS | 25.0% |
| !! | ATGGTTGTTTGAAAAGTTTT+TGG | + | chr5.3:44139771-44139790 | MS.gene053864:intron | 25.0% |
| !! | TCATCGACTATAGATAAAAA+CGG | + | chr5.3:44139040-44139059 | MS.gene053864:CDS | 25.0% |
| !! | TGCAAATGATGTTTTCAATT+GGG | + | chr5.3:44139192-44139211 | MS.gene053864:CDS | 25.0% |
| !!! | AAAGTCTTGCTTTTTTTTGT+TGG | - | chr5.3:44140971-44140990 | None:intergenic | 25.0% |
| !!! | AAAGTGTCTTTGAAATATGT+TGG | - | chr5.3:44140108-44140127 | None:intergenic | 25.0% |
| !!! | AAGTGTCTTTGAAATATGTT+GGG | - | chr5.3:44140107-44140126 | None:intergenic | 25.0% |
| !!! | ACACATACTTTGTGTTTTAA+AGG | + | chr5.3:44140566-44140585 | MS.gene053864:CDS | 25.0% |
| !!! | ATGTTAACTTGGTTGAATTT+TGG | + | chr5.3:44140202-44140221 | MS.gene053864:CDS | 25.0% |
| !!! | CACATACTTTGTGTTTTAAA+GGG | + | chr5.3:44140567-44140586 | MS.gene053864:CDS | 25.0% |
| AAATGAGTTTGAAGAGACTT+GGG | + | chr5.3:44140005-44140024 | MS.gene053864:CDS | 30.0% | |
| CAAGTAAGTACATTGTGAAT+AGG | + | chr5.3:44140610-44140629 | MS.gene053864:CDS | 30.0% | |
| CCAAAATTTGCAAAGACTAA+AGG | + | chr5.3:44140900-44140919 | MS.gene053864:CDS | 30.0% | |
| CTATTCACAATGTACTTACT+TGG | - | chr5.3:44140612-44140631 | None:intergenic | 30.0% | |
| GAAAGTGAGAATTCTTTCTA+TGG | + | chr5.3:44140162-44140181 | MS.gene053864:CDS | 30.0% | |
| TACCTCATACGCATAATAAA+AGG | - | chr5.3:44139539-44139558 | None:intergenic | 30.0% | |
| TCATACGCATAATAAAAGGA+TGG | - | chr5.3:44139535-44139554 | None:intergenic | 30.0% | |
| TGATCGGTTATTATAAGAGT+TGG | - | chr5.3:44139817-44139836 | None:intergenic | 30.0% | |
| TGTTAACATGGAAAAACAGT+TGG | + | chr5.3:44140791-44140810 | MS.gene053864:CDS | 30.0% | |
| TTCTACTTCGTCAGAAATAT+TGG | - | chr5.3:44140871-44140890 | None:intergenic | 30.0% | |
| ! | AAAGTTTCAAGTCATGTGTT+TGG | + | chr5.3:44139968-44139987 | MS.gene053864:CDS | 30.0% |
| ! | AAATGATGTTTTCAATTGGG+TGG | + | chr5.3:44139195-44139214 | MS.gene053864:CDS | 30.0% |
| ! | AAGTTTCAAGTCATGTGTTT+GGG | + | chr5.3:44139969-44139988 | MS.gene053864:CDS | 30.0% |
| ! | AATGATGTTTTCAATTGGGT+GGG | + | chr5.3:44139196-44139215 | MS.gene053864:CDS | 30.0% |
| ! | ATCCTTTTATTATGCGTATG+AGG | + | chr5.3:44139534-44139553 | MS.gene053864:intron | 30.0% |
| ! | TGATGATGAATTAAAGGCTA+CGG | + | chr5.3:44138931-44138950 | MS.gene053864:CDS | 30.0% |
| ! | TTTTATTATGCGTATGAGGT+AGG | + | chr5.3:44139538-44139557 | MS.gene053864:intron | 30.0% |
| !! | AACTTGTTTTCAAATTCCTC+AGG | + | chr5.3:44138446-44138465 | MS.gene053864:CDS | 30.0% |
| !! | ATTTTCTATAGCCACTTTCA+TGG | - | chr5.3:44139848-44139867 | None:intergenic | 30.0% |
| !! | CCTTTAGTCTTTGCAAATTT+TGG | - | chr5.3:44140903-44140922 | None:intergenic | 30.0% |
| !! | GAAAAGTTTTTGGAAGCAAT+GGG | + | chr5.3:44139781-44139800 | MS.gene053864:intron | 30.0% |
| !! | TATTTTGTTTGCTCGAAAGA+GGG | + | chr5.3:44139079-44139098 | MS.gene053864:CDS | 30.0% |
| !! | TGAAAAGTTTTTGGAAGCAA+TGG | + | chr5.3:44139780-44139799 | MS.gene053864:intron | 30.0% |
| !! | TTAGTCTTTGCAAATTTTGG+TGG | - | chr5.3:44140900-44140919 | None:intergenic | 30.0% |
| !!! | TCGATTGAAGCATGTTTTTT+GGG | + | chr5.3:44139570-44139589 | MS.gene053864:intron | 30.0% |
| AACATGGAAAAACAGTTGGA+CGG | + | chr5.3:44140795-44140814 | MS.gene053864:CDS | 35.0% | |
| AAGAATCAAATCATCTGTCC+TGG | - | chr5.3:44140844-44140863 | None:intergenic | 35.0% | |
| AATCAAAGGTTGCAAAGAGA+AGG | + | chr5.3:44140935-44140954 | MS.gene053864:CDS | 35.0% | |
| ACACAAAGTATGTGTCTACA+AGG | - | chr5.3:44140561-44140580 | None:intergenic | 35.0% | |
| AGGACAGATGATTTGATTCT+TGG | + | chr5.3:44140843-44140862 | MS.gene053864:CDS | 35.0% | |
| AGGTAATAGATTGTCGATGA+TGG | - | chr5.3:44139708-44139727 | None:intergenic | 35.0% | |
| CAAATGAGTTTGAAGAGACT+TGG | + | chr5.3:44140004-44140023 | MS.gene053864:CDS | 35.0% | |
| CAAGTCTCTTCAAACTCATT+TGG | - | chr5.3:44140006-44140025 | None:intergenic | 35.0% | |
| CATCGACAATCTATTACCTT+CGG | + | chr5.3:44139709-44139728 | MS.gene053864:intron | 35.0% | |
| GAATTCATCCTCATCATACA+TGG | - | chr5.3:44139944-44139963 | None:intergenic | 35.0% | |
| GCATGTAGTAGAGCAAATAT+AGG | + | chr5.3:44139343-44139362 | MS.gene053864:intron | 35.0% | |
| GGACAGATGATTTGATTCTT+GGG | + | chr5.3:44140844-44140863 | MS.gene053864:CDS | 35.0% | |
| GTAAGTACATTGTGAATAGG+TGG | + | chr5.3:44140613-44140632 | MS.gene053864:CDS | 35.0% | |
| TAAGAAAGATGAAGATGGGA+TGG | + | chr5.3:44140419-44140438 | MS.gene053864:CDS | 35.0% | |
| TGACATAGTTGACAATGTCT+TGG | + | chr5.3:44140665-44140684 | MS.gene053864:CDS | 35.0% | |
| TGTCAAGGTTAGAAGAAGAA+GGG | + | chr5.3:44139147-44139166 | MS.gene053864:CDS | 35.0% | |
| TGTTGGGGTTATGAAAATGT+TGG | + | chr5.3:44139400-44139419 | MS.gene053864:intron | 35.0% | |
| TTGCTCATGCAAAATGTTTC+AGG | + | chr5.3:44140524-44140543 | MS.gene053864:CDS | 35.0% | |
| TTTCATGGAAGGATCTTGAT+CGG | - | chr5.3:44139833-44139852 | None:intergenic | 35.0% | |
| TTTGCAAAGACTAAAGGTAG+TGG | + | chr5.3:44140906-44140925 | MS.gene053864:CDS | 35.0% | |
| TTTGGGAAGATGGTATTTGT+AGG | + | chr5.3:44139587-44139606 | MS.gene053864:intron | 35.0% | |
| ! | AGTTTCAAGTCATGTGTTTG+GGG | + | chr5.3:44139970-44139989 | MS.gene053864:CDS | 35.0% |
| ! | ATGATGTTTTCAATTGGGTG+GGG | + | chr5.3:44139197-44139216 | MS.gene053864:CDS | 35.0% |
| ! | GGTAGTGGTAAAAGAATCAA+AGG | + | chr5.3:44140921-44140940 | MS.gene053864:CDS | 35.0% |
| ! | TTATTCCTTATTTGGGGATG+TGG | + | chr5.3:44139615-44139634 | MS.gene053864:intron | 35.0% |
| ! | TTGATTTTTGCACCTTTCAC+CGG | + | chr5.3:44139676-44139695 | MS.gene053864:intron | 35.0% |
| !! | GTATTTTGTTTGCTCGAAAG+AGG | + | chr5.3:44139078-44139097 | MS.gene053864:CDS | 35.0% |
| !! | TCTTTGCAAATTTTGGTGGA+AGG | - | chr5.3:44140896-44140915 | None:intergenic | 35.0% |
| !!! | AAGCATGTTTTTTGGGAAGA+TGG | + | chr5.3:44139577-44139596 | MS.gene053864:intron | 35.0% |
| !!! | GTCGATTGAAGCATGTTTTT+TGG | + | chr5.3:44139569-44139588 | MS.gene053864:intron | 35.0% |
| AAACCACCTAAGATTACTGC+AGG | - | chr5.3:44138741-44138760 | None:intergenic | 40.0% | |
| AACCACCTAAGATTACTGCA+GGG | - | chr5.3:44138740-44138759 | None:intergenic | 40.0% | |
| AGGTGTTTCCATGTATGATG+AGG | + | chr5.3:44139933-44139952 | MS.gene053864:CDS | 40.0% | |
| CAACAACCAAATAGAACCAC+GGG | - | chr5.3:44138590-44138609 | None:intergenic | 40.0% | |
| CAAGAGATGTGTATACTCGT+GGG | + | chr5.3:44140337-44140356 | MS.gene053864:CDS | 40.0% | |
| CAATCTATTACCTTCGGCAT+AGG | + | chr5.3:44139715-44139734 | MS.gene053864:intron | 40.0% | |
| CCAAAACTATTGTTGGAACG+TGG | + | chr5.3:44140300-44140319 | MS.gene053864:CDS | 40.0% | |
| CCAACAACCAAATAGAACCA+CGG | - | chr5.3:44138591-44138610 | None:intergenic | 40.0% | |
| CTATGAAGAGACCGTTTCTA+AGG | + | chr5.3:44139278-44139297 | MS.gene053864:CDS | 40.0% | |
| CTGTCAAGGTTAGAAGAAGA+AGG | + | chr5.3:44139146-44139165 | MS.gene053864:CDS | 40.0% | |
| CTTAGAAACGGTCTCTTCAT+AGG | - | chr5.3:44139280-44139299 | None:intergenic | 40.0% | |
| GAAAAATACGCACTCTCTGT+TGG | + | chr5.3:44138998-44139017 | MS.gene053864:CDS | 40.0% | |
| GATGAATTAAAGGCTACGGT+TGG | + | chr5.3:44138935-44138954 | MS.gene053864:CDS | 40.0% | |
| GCAAACTCATTTCTGATGTG+TGG | + | chr5.3:44140697-44140716 | MS.gene053864:CDS | 40.0% | |
| GCAAAGTGAATCTACTGTCA+AGG | + | chr5.3:44139132-44139151 | MS.gene053864:CDS | 40.0% | |
| GGAGAAAGCTGGAAAAGATA+AGG | + | chr5.3:44140740-44140759 | MS.gene053864:CDS | 40.0% | |
| GTGAAGCAAGTGGATATGTA+TGG | - | chr5.3:44139258-44139277 | None:intergenic | 40.0% | |
| GTTAAATGGGGCTGTTAACA+TGG | + | chr5.3:44140779-44140798 | MS.gene053864:CDS | 40.0% | |
| TATTTGCCGAATGAGAAGGA+TGG | + | chr5.3:44139103-44139122 | MS.gene053864:CDS | 40.0% | |
| TCAAGATCCTTCCATGAAAG+TGG | + | chr5.3:44139834-44139853 | MS.gene053864:CDS | 40.0% | |
| TCCTTACCATCCTTCTCATT+CGG | - | chr5.3:44139112-44139131 | None:intergenic | 40.0% | |
| TGAAACCACATCCCCAAATA+AGG | - | chr5.3:44139623-44139642 | None:intergenic | 40.0% | |
| TGCAAAATGTTTCAGGCTGA+AGG | + | chr5.3:44140531-44140550 | MS.gene053864:CDS | 40.0% | |
| TGTTATAAGTCCTATGCCGA+AGG | - | chr5.3:44139728-44139747 | None:intergenic | 40.0% | |
| TTCCTTGCAGACCTTAGAAA+CGG | - | chr5.3:44139292-44139311 | None:intergenic | 40.0% | |
| ! | AAACAGTTGGACGGATTTGA+AGG | + | chr5.3:44140804-44140823 | MS.gene053864:CDS | 40.0% |
| ! | AACAGTTGGACGGATTTGAA+GGG | + | chr5.3:44140805-44140824 | MS.gene053864:CDS | 40.0% |
| ! | AATAGAAGCGCAACGACATA+AGG | + | chr5.3:44140242-44140261 | MS.gene053864:CDS | 40.0% |
| ! | AGAAGGGCTTTAACAAGAGA+AGG | + | chr5.3:44139163-44139182 | MS.gene053864:CDS | 40.0% |
| ! | ATGATCTTTGGGGACAATTG+CGG | - | chr5.3:44141028-44141047 | None:intergenic | 40.0% |
| ! | CCACGTTCCAACAATAGTTT+TGG | - | chr5.3:44140303-44140322 | None:intergenic | 40.0% |
| ! | TCTATAGCCACTTTCATGGA+AGG | - | chr5.3:44139844-44139863 | None:intergenic | 40.0% |
| ! | TGAATTATGGATTGCATGCG+TGG | + | chr5.3:44140380-44140399 | MS.gene053864:CDS | 40.0% |
| ! | TGATGTTTTCAATTGGGTGG+GGG | + | chr5.3:44139198-44139217 | MS.gene053864:CDS | 40.0% |
| ! | TGATTTTTGCACCTTTCACC+GGG | + | chr5.3:44139677-44139696 | MS.gene053864:intron | 40.0% |
| ! | TTGTCGATGATGGTTTATCC+CGG | - | chr5.3:44139698-44139717 | None:intergenic | 40.0% |
| !! | AAGGGAGTTCTAAAAGAACC+AGG | + | chr5.3:44140823-44140842 | MS.gene053864:CDS | 40.0% |
| !! | AAGTTTTTGGAAGCAATGGG+CGG | + | chr5.3:44139784-44139803 | MS.gene053864:intron | 40.0% |
| !! | TCAAAGACACTTTTCTGGCA+GGG | + | chr5.3:44140115-44140134 | MS.gene053864:CDS | 40.0% |
| !! | TTCAAAGACACTTTTCTGGC+AGG | + | chr5.3:44140114-44140133 | MS.gene053864:CDS | 40.0% |
| AGAAGCCCTGCAGTAATCTT+AGG | + | chr5.3:44138732-44138751 | MS.gene053864:intron | 45.0% | |
| ATAAAAACGGCGTGAAGCGT+TGG | + | chr5.3:44139053-44139072 | MS.gene053864:CDS | 45.0% | |
| CTCTTCATAGGTGAAGCAAG+TGG | - | chr5.3:44139268-44139287 | None:intergenic | 45.0% | |
| GAACCACTTACATAGCTGTG+TGG | + | chr5.3:44140719-44140738 | MS.gene053864:CDS | 45.0% | |
| GCAAGAGATGTGTATACTCG+TGG | + | chr5.3:44140336-44140355 | MS.gene053864:CDS | 45.0% | |
| GGGTTATTTGCCGAATGAGA+AGG | + | chr5.3:44139099-44139118 | MS.gene053864:CDS | 45.0% | |
| TCTCCACACAGCTATGTAAG+TGG | - | chr5.3:44140725-44140744 | None:intergenic | 45.0% | |
| TGATGGTTTATCCCGGTGAA+AGG | - | chr5.3:44139691-44139710 | None:intergenic | 45.0% | |
| ! | CCGTGGTTCTATTTGGTTGT+TGG | + | chr5.3:44138588-44138607 | MS.gene053864:intron | 45.0% |
| ! | TGTTTGAGATTCGAAGCACG+TGG | + | chr5.3:44140079-44140098 | MS.gene053864:CDS | 45.0% |
| !! | CTTGGGCGTTTTTGATGACA+AGG | + | chr5.3:44140022-44140041 | MS.gene053864:CDS | 45.0% |
| !!! | ATATTTATTTTGTTAATTTT+AGG | + | chr5.3:44138886-44138905 | MS.gene053864:intron | 5.0% |
| AGCCCTGCAGTAATCTTAGG+TGG | + | chr5.3:44138735-44138754 | MS.gene053864:intron | 50.0% | |
| CATAGCTGTGTGGAGAAAGC+TGG | + | chr5.3:44140729-44140748 | MS.gene053864:CDS | 50.0% | |
| GCCGAATGAGAAGGATGGTA+AGG | + | chr5.3:44139108-44139127 | MS.gene053864:CDS | 50.0% | |
| GCGTATGAGGTAGGTGAAGA+AGG | + | chr5.3:44139547-44139566 | MS.gene053864:intron | 50.0% | |
| ! | GGATTGCATGCGTGGATTGT+GGG | + | chr5.3:44140388-44140407 | MS.gene053864:CDS | 50.0% |
| ! | GTTTTCAATTGGGTGGGGGA+AGG | + | chr5.3:44139202-44139221 | MS.gene053864:CDS | 50.0% |
| ! | TGCTGTCCCGTGGTTCTATT+TGG | + | chr5.3:44138581-44138600 | MS.gene053864:intron | 50.0% |
| ! | TGGATTGCATGCGTGGATTG+TGG | + | chr5.3:44140387-44140406 | MS.gene053864:CDS | 50.0% |
| ! | TGTTGGAACGTGGTATCGAG+AGG | + | chr5.3:44140310-44140329 | MS.gene053864:CDS | 50.0% |
| !! | GACCGTTTCTAAGGTCTGCA+AGG | + | chr5.3:44139287-44139306 | MS.gene053864:CDS | 50.0% |
| !! | TTGGTTCTACTGCTGTCCCG+TGG | + | chr5.3:44138571-44138590 | MS.gene053864:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 44138429 | 44141055 | 44138429 | ID=MS.gene053864 |
| chr5.3 | mRNA | 44138429 | 44141055 | 44138429 | ID=MS.gene053864.t1;Parent=MS.gene053864 |
| chr5.3 | exon | 44138429 | 44138467 | 44138429 | ID=MS.gene053864.t1.exon1;Parent=MS.gene053864.t1 |
| chr5.3 | CDS | 44138429 | 44138467 | 44138429 | ID=cds.MS.gene053864.t1;Parent=MS.gene053864.t1 |
| chr5.3 | exon | 44138908 | 44139312 | 44138908 | ID=MS.gene053864.t1.exon2;Parent=MS.gene053864.t1 |
| chr5.3 | CDS | 44138908 | 44139312 | 44138908 | ID=cds.MS.gene053864.t1;Parent=MS.gene053864.t1 |
| chr5.3 | exon | 44139787 | 44141055 | 44139787 | ID=MS.gene053864.t1.exon3;Parent=MS.gene053864.t1 |
| chr5.3 | CDS | 44139787 | 44141055 | 44139787 | ID=cds.MS.gene053864.t1;Parent=MS.gene053864.t1 |
| Gene Sequence |
| Protein sequence |
