AlfalfaGEDB | MS.gene05391

M. sativa cultivar XinJiangDaYe / MS.gene05391

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05391.t1	RHN52747.1	87.4	246	27	2	1	246	33	274	1.90E-113	418.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05391.t1	Q9C6K9	55.6	239	100	2	1	236	333	568	8.1e-65	248.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05391.t1	A0A072UBL0	87.4	246	27	2	1	246	348	589	1.4e-113	418.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05391.t1	MTR_6g082890	87.398	246	27	2	1	246	348	589	9.27e-152	435
MS.gene05391.t1	MTR_6g082890	42.570	249	133	4	1	245	48	290	1.64e-56	189
MS.gene05391.t1	MTR_6g082810	85.366	246	32	2	1	246	383	624	4.58e-145	419
MS.gene05391.t1	MTR_6g082810	42.915	247	131	4	3	245	85	325	1.01e-59	199
MS.gene05391.t1	MTR_7g082530	53.975	239	103	4	1	236	403	637	6.35e-79	251
MS.gene05391.t1	MTR_7g082530	53.975	239	103	4	1	236	403	637	8.22e-79	250
MS.gene05391.t1	MTR_6g083020	53.138	239	105	4	1	236	377	611	8.28e-79	250
MS.gene05391.t1	MTR_1g110180	52.227	247	113	3	1	245	380	623	1.81e-78	249
MS.gene05391.t1	MTR_5g055310	53.689	244	105	3	3	241	356	596	9.50e-77	244
MS.gene05391.t1	MTR_6g082700	47.390	249	117	3	1	243	166	406	2.66e-76	237

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05391.t1	AT1G25390	55.649	239	100	2	1	236	333	568	1.36e-81	256
MS.gene05391.t1	AT1G25390	55.649	239	100	2	1	236	333	568	1.36e-81	256
MS.gene05391.t1	AT1G66880	54.132	242	94	3	3	236	390	622	5.21e-77	245
MS.gene05391.t1	AT1G18390	52.282	241	110	2	3	241	388	625	8.35e-76	242
MS.gene05391.t1	AT1G18390	52.282	241	110	2	3	241	382	619	1.25e-75	241
MS.gene05391.t1	AT1G66880	54.132	242	94	3	3	236	632	864	3.86e-75	245
MS.gene05391.t1	AT5G38210	51.899	237	109	2	3	237	396	629	4.71e-74	238
MS.gene05391.t1	AT5G38210	51.440	243	101	3	3	237	402	635	4.73e-74	238
MS.gene05391.t1	AT1G66880	54.132	242	94	3	3	236	1011	1243	6.84e-74	244
MS.gene05391.t1	AT5G38210	51.899	237	109	2	3	237	414	647	7.24e-74	238

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Find 47 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGCAATATTCTGC+TGG	0.482538	6.1:-72813279	MS.gene05391:CDS
AAAAGTGATGTCTATAGCTT+TGG	0.347782	6.1:-72813116	MS.gene05391:CDS
AAACCCTCAAATTTAATGCA+AGG	0.579032	6.1:-72813065	MS.gene05391:CDS
AAAGTGATGTCTATAGCTTT+GGG	0.409554	6.1:-72813115	MS.gene05391:CDS
AAGTGATGTCTATAGCTTTG+GGG	0.654259	6.1:-72813114	MS.gene05391:CDS
ACAGGTGTTAGAGACTCTAC+AGG	0.529905	6.1:-72812847	MS.gene05391:CDS
ACCCTAACACAACATCTTCA+CGG	0.539084	6.1:-72813407	MS.gene05391:CDS
ACTCAGGCCAACCATGAAAC+AGG	0.446500	6.1:-72812865	MS.gene05391:CDS
ACTCTACAGGGCATACGCAA+AGG	0.578327	6.1:-72812834	MS.gene05391:CDS
ACTGCCTTGCATTAAATTTG+AGG	0.434081	6.1:+72813061	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTGATGTCTATAGCTT+TGG	-	chr6.1:72813214-72813233	MS.gene05391:CDS	30.0%
AAACCCTCAAATTTAATGCA+AGG	-	chr6.1:72813265-72813284	MS.gene05391:CDS	30.0%
AAAGTGATGTCTATAGCTTT+GGG	-	chr6.1:72813215-72813234	MS.gene05391:CDS	30.0%
AGATTACTACAAAACTGGAA+GGG	-	chr6.1:72813183-72813202	MS.gene05391:CDS	30.0%
TTGCATTAAATTTGAGGGTT+TGG	+	chr6.1:72813266-72813285	None:intergenic	30.0%
AAAAGGAAGCAATATTCTGC+TGG	-	chr6.1:72813051-72813070	MS.gene05391:CDS	35.0%
ACTGCCTTGCATTAAATTTG+AGG	+	chr6.1:72813272-72813291	None:intergenic	35.0%
ATCATCCATCGTGACATAAA+AGG	-	chr6.1:72813034-72813053	MS.gene05391:CDS	35.0%
CAGATTACTACAAAACTGGA+AGG	-	chr6.1:72813182-72813201	MS.gene05391:CDS	35.0%
CTGCCTTGCATTAAATTTGA+GGG	+	chr6.1:72813271-72813290	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	72812806	72813546	72812806	ID=MS.gene05391
chr6.1	mRNA	72812806	72813546	72812806	ID=MS.gene05391.t1;Parent=MS.gene05391
chr6.1	exon	72812806	72813546	72812806	ID=MS.gene05391.t1.exon1;Parent=MS.gene05391.t1
chr6.1	CDS	72812806	72813546	72812806	ID=cds.MS.gene05391.t1;Parent=MS.gene05391.t1

Gene Sequence

>MS.gene05391

ATGAAAGAAATTGAGATCTTAAGTCACCTGAATCATCAAAATCTGGTTTCACTTTATGGCTGCAGTTCTCGTCAAAGCAACAAGCACATGCTAGTGTACGAGTACATCTCTAATGGAACCCTAACACAACATCTTCACGGATCTTCTTATAGTAAACTATCATGGCTTACTAGATTGAATATTGCCATTGAAACTGCAAACGCCTTGGTATTTCTTCATGACTCAGGTATCATCCATCGTGACATAAAAGGAAGCAATATTCTGCTGGATGAAAAATTTTCTGTTAAAGTTGCAGATTTTGGACTCTCACGCTTACTTCCAGACAATGTTACCCATGTTTCAACTTTTCCGGTAGGAACTCATGCTTACATTGATCCAGATTACTACAAAACTGGAAGGGTCAGTGACAAAAGTGATGTCTATAGCTTTGGGGTGATCTTATTTGAGCTTATATCATCCAAACCCTCAAATTTAATGCAAGGCAGTACTGAGTGTGTCAGTGTCAATCTTCTTGCCCAATTTGCAAAGAGTAAAATCTTGAACAAAGAATTGGATCTGCTAATCGATCGAAGTCTTTTAATTTATTGTAATGAAAACATAGAGGAAATGATAACAGCAGTGACAGAGTTGGCATTTCAGTGTGTGCAGTGTCCCAAGGAACTCAGGCCAACCATGAAACAGGTGTTAGAGACTCTACAGGGCATACGCAAAGGGAAATGGGGATTCAACCAAATAACCTAG

Protein sequence

>MS.gene05391.t1

MKEIEILSHLNHQNLVSLYGCSSRQSNKHMLVYEYISNGTLTQHLHGSSYSKLSWLTRLNIAIETANALVFLHDSGIIHRDIKGSNILLDEKFSVKVADFGLSRLLPDNVTHVSTFPVGTHAYIDPDYYKTGRVSDKSDVYSFGVILFELISSKPSNLMQGSTECVSVNLLAQFAKSKILNKELDLLIDRSLLIYCNENIEEMITAVTELAFQCVQCPKELRPTMKQVLETLQGIRKGKWGFNQIT