Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054149.t1 | XP_013466407.1 | 77.4 | 124 | 19 | 1 | 20 | 134 | 49 | 172 | 1.90E-43 | 185.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054149.t1 | O23310 | 58.2 | 91 | 38 | 0 | 21 | 111 | 19 | 109 | 8.4e-24 | 111.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054149.t1 | A0A072VGA7 | 77.4 | 124 | 19 | 1 | 20 | 134 | 49 | 172 | 1.4e-43 | 185.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene054149.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054149.t1 | MTR_1g029070 | 77.273 | 110 | 16 | 1 | 20 | 120 | 49 | 158 | 1.26e-57 | 176 |
MS.gene054149.t1 | MTR_1g072790 | 49.565 | 115 | 54 | 1 | 19 | 133 | 25 | 135 | 1.04e-34 | 119 |
MS.gene054149.t1 | MTR_8g091720 | 53.333 | 105 | 39 | 1 | 17 | 111 | 12 | 116 | 3.47e-34 | 118 |
MS.gene054149.t1 | MTR_7g061270 | 47.706 | 109 | 55 | 1 | 22 | 130 | 25 | 131 | 5.86e-33 | 114 |
MS.gene054149.t1 | MTR_7g100650 | 47.706 | 109 | 55 | 1 | 22 | 130 | 25 | 131 | 6.90e-33 | 114 |
MS.gene054149.t1 | MTR_5g095740 | 54.839 | 93 | 41 | 1 | 19 | 111 | 20 | 111 | 2.24e-32 | 113 |
MS.gene054149.t1 | MTR_1g039040 | 52.222 | 90 | 43 | 0 | 22 | 111 | 5 | 94 | 3.22e-32 | 112 |
MS.gene054149.t1 | MTR_2g026710 | 55.556 | 90 | 40 | 0 | 22 | 111 | 16 | 105 | 4.84e-32 | 111 |
MS.gene054149.t1 | MTR_3g058980 | 49.541 | 109 | 52 | 2 | 3 | 111 | 10 | 115 | 8.81e-32 | 111 |
MS.gene054149.t1 | MTR_4g133938 | 54.255 | 94 | 43 | 0 | 18 | 111 | 14 | 107 | 5.94e-30 | 105 |
MS.gene054149.t1 | MTR_4g133952 | 48.889 | 90 | 46 | 0 | 22 | 111 | 57 | 146 | 6.30e-29 | 105 |
MS.gene054149.t1 | MTR_8g093920 | 51.765 | 85 | 41 | 0 | 28 | 112 | 45 | 129 | 1.62e-28 | 103 |
MS.gene054149.t1 | MTR_1g088860 | 44.762 | 105 | 58 | 0 | 7 | 111 | 20 | 124 | 5.03e-28 | 102 |
MS.gene054149.t1 | MTR_4g119500 | 50.000 | 84 | 42 | 0 | 28 | 111 | 27 | 110 | 1.34e-27 | 99.4 |
MS.gene054149.t1 | MTR_0392s0020 | 48.810 | 84 | 43 | 0 | 28 | 111 | 23 | 106 | 7.76e-27 | 97.4 |
MS.gene054149.t1 | MTR_1g028480 | 52.326 | 86 | 32 | 1 | 54 | 130 | 20 | 105 | 2.89e-25 | 92.8 |
MS.gene054149.t1 | MTR_1g029100 | 46.250 | 80 | 43 | 0 | 24 | 103 | 3 | 82 | 4.33e-24 | 89.0 |
MS.gene054149.t1 | MTR_1g083070 | 41.667 | 84 | 49 | 0 | 28 | 111 | 9 | 92 | 1.77e-21 | 83.6 |
MS.gene054149.t1 | MTR_5g095900 | 36.782 | 87 | 55 | 0 | 28 | 114 | 21 | 107 | 7.50e-15 | 67.8 |
MS.gene054149.t1 | MTR_2g056000 | 23.438 | 128 | 93 | 1 | 6 | 128 | 19 | 146 | 2.68e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054149.t1 | AT4G14540 | 56.989 | 93 | 40 | 0 | 19 | 111 | 17 | 109 | 8.70e-35 | 118 |
MS.gene054149.t1 | AT2G38880 | 50.893 | 112 | 53 | 2 | 18 | 129 | 16 | 125 | 4.97e-34 | 115 |
MS.gene054149.t1 | AT2G38880 | 50.893 | 112 | 51 | 2 | 18 | 129 | 16 | 123 | 6.20e-34 | 115 |
MS.gene054149.t1 | AT2G38880 | 50.893 | 112 | 53 | 2 | 18 | 129 | 16 | 125 | 6.35e-34 | 115 |
MS.gene054149.t1 | AT2G38880 | 50.893 | 112 | 53 | 2 | 18 | 129 | 16 | 125 | 6.35e-34 | 115 |
MS.gene054149.t1 | AT2G38880 | 50.893 | 112 | 53 | 2 | 18 | 129 | 16 | 125 | 6.35e-34 | 115 |
MS.gene054149.t1 | AT5G47640 | 56.383 | 94 | 40 | 1 | 19 | 112 | 24 | 116 | 4.12e-33 | 115 |
MS.gene054149.t1 | AT3G53340 | 46.429 | 112 | 60 | 0 | 22 | 133 | 28 | 139 | 6.05e-33 | 114 |
MS.gene054149.t1 | AT3G53340 | 46.429 | 112 | 60 | 0 | 22 | 133 | 28 | 139 | 6.05e-33 | 114 |
MS.gene054149.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 3.63e-32 | 110 |
MS.gene054149.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 1.12e-31 | 110 |
MS.gene054149.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 1.12e-31 | 110 |
MS.gene054149.t1 | AT2G37060 | 47.059 | 119 | 57 | 2 | 21 | 133 | 28 | 146 | 1.49e-31 | 110 |
MS.gene054149.t1 | AT2G37060 | 47.059 | 119 | 57 | 2 | 21 | 133 | 28 | 146 | 1.49e-31 | 110 |
MS.gene054149.t1 | AT2G37060 | 47.059 | 119 | 57 | 2 | 21 | 133 | 28 | 146 | 1.49e-31 | 110 |
MS.gene054149.t1 | AT3G53340 | 51.648 | 91 | 44 | 0 | 21 | 111 | 27 | 117 | 2.39e-31 | 108 |
MS.gene054149.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 2.40e-31 | 109 |
MS.gene054149.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 2.40e-31 | 109 |
MS.gene054149.t1 | AT2G38880 | 51.064 | 94 | 46 | 0 | 18 | 111 | 16 | 109 | 2.40e-31 | 109 |
MS.gene054149.t1 | AT3G53340 | 51.648 | 91 | 44 | 0 | 21 | 111 | 27 | 117 | 2.00e-30 | 107 |
MS.gene054149.t1 | AT3G53340 | 51.648 | 91 | 44 | 0 | 21 | 111 | 27 | 117 | 2.00e-30 | 107 |
MS.gene054149.t1 | AT2G13570 | 54.118 | 85 | 39 | 0 | 28 | 112 | 41 | 125 | 1.81e-29 | 106 |
MS.gene054149.t1 | AT1G21970 | 48.352 | 91 | 47 | 0 | 21 | 111 | 57 | 147 | 1.86e-29 | 107 |
MS.gene054149.t1 | AT5G47670 | 48.352 | 91 | 47 | 0 | 21 | 111 | 27 | 117 | 2.78e-29 | 105 |
MS.gene054149.t1 | AT5G47670 | 48.352 | 91 | 47 | 0 | 21 | 111 | 56 | 146 | 5.25e-29 | 105 |
MS.gene054149.t1 | AT5G47670 | 48.352 | 91 | 47 | 0 | 21 | 111 | 56 | 146 | 5.25e-29 | 105 |
MS.gene054149.t1 | AT2G47810 | 48.810 | 84 | 43 | 0 | 28 | 111 | 56 | 139 | 1.48e-26 | 97.4 |
MS.gene054149.t1 | AT1G09030 | 43.820 | 89 | 49 | 1 | 24 | 111 | 3 | 91 | 2.29e-23 | 89.0 |
MS.gene054149.t1 | AT5G08190 | 30.097 | 103 | 69 | 1 | 28 | 130 | 16 | 115 | 8.88e-12 | 59.3 |
Find 31 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTATCGCAACCATGCTTA+TGG | 0.229358 | 1.3:+15062907 | MS.gene054149:CDS |
GATTCTTGTCAAATTTCTAA+TGG | 0.267704 | 1.3:-15062668 | None:intergenic |
AAGCATGGTTGCGATAGTTT+TGG | 0.320197 | 1.3:-15062903 | None:intergenic |
ATATGGACCATGGGTAGGTT+AGG | 0.340306 | 1.3:+15062844 | MS.gene054149:CDS |
TTAGTGGTGAAGATTTAATA+TGG | 0.340490 | 1.3:+15062827 | MS.gene054149:CDS |
CGCAGTTCGTCATTCCTTGT+TGG | 0.350817 | 1.3:-15062640 | None:intergenic |
CATGGGTAGGTTAGGGTTTG+AGG | 0.392495 | 1.3:+15062852 | MS.gene054149:CDS |
ATTCTTGTCAAATTTCTAAT+GGG | 0.396632 | 1.3:-15062667 | None:intergenic |
ACTATCGCAACCATGCTTAT+GGG | 0.422034 | 1.3:+15062908 | MS.gene054149:CDS |
TATGGACCATGGGTAGGTTA+GGG | 0.451497 | 1.3:+15062845 | MS.gene054149:CDS |
GATGTGTGTGTCTGAATTCA+TGG | 0.465046 | 1.3:+15062750 | MS.gene054149:CDS |
GAGAGTCGAAAGATCATTAG+TGG | 0.473561 | 1.3:+15062811 | MS.gene054149:CDS |
GGGTTCAACAAGGATGGATC+AGG | 0.507582 | 1.3:+15062928 | MS.gene054149:CDS |
AATTGCATGCATATCAATGT+TGG | 0.519524 | 1.3:-15062978 | None:intergenic |
TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1.3:+15062862 | MS.gene054149:CDS |
CGTTCATCACAATCAAGCTC+TGG | 0.531661 | 1.3:+15061223 | MS.gene054149:CDS |
AGTGGCTCGAGCAGTGGCAA+TGG | 0.552171 | 1.3:+15062955 | MS.gene054149:CDS |
GCTTATGGGTTCAACAAGGA+TGG | 0.560755 | 1.3:+15062922 | MS.gene054149:CDS |
TGAACGGTTGTTGTTAAATG+AGG | 0.576425 | 1.3:-15061206 | None:intergenic |
TGAAGATTTAATATGGACCA+TGG | 0.589791 | 1.3:+15062834 | MS.gene054149:CDS |
ATTTAATATGGACCATGGGT+AGG | 0.590489 | 1.3:+15062839 | MS.gene054149:CDS |
AAGGATGGATCAGGTGCTAG+TGG | 0.598209 | 1.3:+15062937 | MS.gene054149:CDS |
GGTGCTAGTGGCTCGAGCAG+TGG | 0.601799 | 1.3:+15062949 | MS.gene054149:CDS |
CCTTGTTGAACCCATAAGCA+TGG | 0.602629 | 1.3:-15062918 | None:intergenic |
GAAGATTTAATATGGACCAT+GGG | 0.603633 | 1.3:+15062835 | MS.gene054149:CDS |
CTCAAACCCTAACCTACCCA+TGG | 0.609267 | 1.3:-15062851 | None:intergenic |
TGCAGGTAGGGAGTCCAACA+AGG | 0.616172 | 1.3:+15062626 | MS.gene054149:intron |
CCATGCTTATGGGTTCAACA+AGG | 0.642059 | 1.3:+15062918 | MS.gene054149:CDS |
CAGAGCTTGATTGTGATGAA+CGG | 0.644080 | 1.3:-15061222 | None:intergenic |
ATGTGTGTGTCTGAATTCAT+GGG | 0.648992 | 1.3:+15062751 | MS.gene054149:CDS |
CATGGGCATCATCATCACTG+AGG | 0.744966 | 1.3:+15062768 | MS.gene054149:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAAATTAAAACATGTAA+TGG | - | chr1.3:15062495-15062514 | None:intergenic | 10.0% |
!!! | TTATTGTATTTAAAACTAAT+AGG | + | chr1.3:15061977-15061996 | MS.gene054149:intron | 10.0% |
!! | AGAGAGTAATTATATTTAAA+AGG | + | chr1.3:15061367-15061386 | MS.gene054149:intron | 15.0% |
!! | ATGCCAAAAAAAAAAATATA+TGG | + | chr1.3:15061732-15061751 | MS.gene054149:intron | 15.0% |
!!! | GATCCATATATTTTTTTTTT+TGG | - | chr1.3:15061738-15061757 | None:intergenic | 15.0% |
!!! | TGAATGAAATTTTGATTTAA+GGG | + | chr1.3:15061708-15061727 | MS.gene054149:intron | 15.0% |
!!! | TTGAATGAAATTTTGATTTA+AGG | + | chr1.3:15061707-15061726 | MS.gene054149:intron | 15.0% |
!! | AAAAAATTGAAATCTTAGCA+AGG | - | chr1.3:15061946-15061965 | None:intergenic | 20.0% |
!! | ATTCTTGTCAAATTTCTAAT+GGG | - | chr1.3:15062670-15062689 | None:intergenic | 20.0% |
!!! | AACAAAACTGAAGTATTTAA+AGG | - | chr1.3:15062114-15062133 | None:intergenic | 20.0% |
!!! | ACAAAACTGAAGTATTTAAA+GGG | - | chr1.3:15062113-15062132 | None:intergenic | 20.0% |
!!! | CTTTTCTTCTTTTTAATCTA+AGG | - | chr1.3:15062311-15062330 | None:intergenic | 20.0% |
!!! | GAAATTATACGTTACATTTT+TGG | + | chr1.3:15062330-15062349 | MS.gene054149:intron | 20.0% |
!!! | GAATGAAATTTTGATTTAAG+GGG | + | chr1.3:15061709-15061728 | MS.gene054149:intron | 20.0% |
!!! | TGTGTATATATTGTTTTGAA+TGG | + | chr1.3:15061455-15061474 | MS.gene054149:intron | 20.0% |
! | AAAAATATCTCAAGATGCTA+AGG | + | chr1.3:15062717-15062736 | MS.gene054149:CDS | 25.0% |
! | AATAAAAGTGAGAGAAAAGT+TGG | + | chr1.3:15062066-15062085 | MS.gene054149:intron | 25.0% |
! | AGAAAAGAAAGATCTAACTT+GGG | + | chr1.3:15061630-15061649 | MS.gene054149:intron | 25.0% |
! | ATAAAAGTGAGAGAAAAGTT+GGG | + | chr1.3:15062067-15062086 | MS.gene054149:intron | 25.0% |
! | GATTCTTGTCAAATTTCTAA+TGG | - | chr1.3:15062671-15062690 | None:intergenic | 25.0% |
! | GGGTGAAAAAAAATAAACAA+GGG | + | chr1.3:15062087-15062106 | MS.gene054149:intron | 25.0% |
! | TGGGTGAAAAAAAATAAACA+AGG | + | chr1.3:15062086-15062105 | MS.gene054149:intron | 25.0% |
! | TTAGTGGTGAAGATTTAATA+TGG | + | chr1.3:15062827-15062846 | MS.gene054149:CDS | 25.0% |
!! | CTAAAAAAGATTTGAGATCT+TGG | + | chr1.3:15061871-15061890 | MS.gene054149:intron | 25.0% |
!! | GTGTGAGTGTTATAAATTTT+GGG | + | chr1.3:15061829-15061848 | MS.gene054149:intron | 25.0% |
!! | TGTGAGTGTTATAAATTTTG+GGG | + | chr1.3:15061830-15061849 | MS.gene054149:intron | 25.0% |
!! | TGTGTGAGTGTTATAAATTT+TGG | + | chr1.3:15061828-15061847 | MS.gene054149:intron | 25.0% |
!! | TTCTTCTTTTTAATCTAAGG+CGG | - | chr1.3:15062308-15062327 | None:intergenic | 25.0% |
!!! | TTGTTAACCATTTTTGACAT+GGG | + | chr1.3:15061670-15061689 | MS.gene054149:intron | 25.0% |
!!! | TTTTTAGTGTGAATCGAATT+CGG | - | chr1.3:15061858-15061877 | None:intergenic | 25.0% |
!!! | TTTTTTGTCTGTGTATATAC+TGG | - | chr1.3:15062177-15062196 | None:intergenic | 25.0% |
AAAGAGATAGAGGTCAAATA+TGG | - | chr1.3:15061761-15061780 | None:intergenic | 30.0% | |
AAATTGAGAGAAAGAGATAG+AGG | - | chr1.3:15061771-15061790 | None:intergenic | 30.0% | |
AAGAGATAGAGGTCAAATAT+GGG | - | chr1.3:15061760-15061779 | None:intergenic | 30.0% | |
AATCTAAGAGAAGCAGTTAA+GGG | - | chr1.3:15061590-15061609 | None:intergenic | 30.0% | |
ACCATTAGATAGATCAACAA+TGG | - | chr1.3:15062144-15062163 | None:intergenic | 30.0% | |
CAGAAAAGAAAGATCTAACT+TGG | + | chr1.3:15061629-15061648 | MS.gene054149:intron | 30.0% | |
GAAGATTTAATATGGACCAT+GGG | + | chr1.3:15062835-15062854 | MS.gene054149:CDS | 30.0% | |
TCCATTGTTGATCTATCTAA+TGG | + | chr1.3:15062140-15062159 | MS.gene054149:intron | 30.0% | |
TGAAGATTTAATATGGACCA+TGG | + | chr1.3:15062834-15062853 | MS.gene054149:CDS | 30.0% | |
! | CCTTCTTTTTATTGCATAGA+GGG | - | chr1.3:15062381-15062400 | None:intergenic | 30.0% |
! | CTTAACTATGTGCTTCTTTT+TGG | + | chr1.3:15062591-15062610 | MS.gene054149:intron | 30.0% |
! | GTATTTTCCCATGTCAAAAA+TGG | - | chr1.3:15061680-15061699 | None:intergenic | 30.0% |
! | TCCTTCTTTTTATTGCATAG+AGG | - | chr1.3:15062382-15062401 | None:intergenic | 30.0% |
!! | CTTGTTAACCATTTTTGACA+TGG | + | chr1.3:15061669-15061688 | MS.gene054149:intron | 30.0% |
ATCTAAGAGAAGCAGTTAAG+GGG | - | chr1.3:15061589-15061608 | None:intergenic | 35.0% | |
ATGTGTGTGTCTGAATTCAT+GGG | + | chr1.3:15062751-15062770 | MS.gene054149:CDS | 35.0% | |
ATTTAATATGGACCATGGGT+AGG | + | chr1.3:15062839-15062858 | MS.gene054149:CDS | 35.0% | |
CCCTCTATGCAATAAAAAGA+AGG | + | chr1.3:15062378-15062397 | MS.gene054149:intron | 35.0% | |
GAATCTAAGAGAAGCAGTTA+AGG | - | chr1.3:15061591-15061610 | None:intergenic | 35.0% | |
! | TGAACGGTTGTTGTTAAATG+AGG | - | chr1.3:15061209-15061228 | None:intergenic | 35.0% |
!! | TGAGATATTTTTGCGTACGA+TGG | - | chr1.3:15062709-15062728 | None:intergenic | 35.0% |
AACTATCGCAACCATGCTTA+TGG | + | chr1.3:15062907-15062926 | MS.gene054149:CDS | 40.0% | |
ACTATCGCAACCATGCTTAT+GGG | + | chr1.3:15062908-15062927 | MS.gene054149:CDS | 40.0% | |
ATTTAGTCCCTTTGCAGGTA+GGG | + | chr1.3:15062614-15062633 | MS.gene054149:intron | 40.0% | |
CAGAGCTTGATTGTGATGAA+CGG | - | chr1.3:15061225-15061244 | None:intergenic | 40.0% | |
CTGCTTCTCTTAGATTCTCA+AGG | + | chr1.3:15061594-15061613 | MS.gene054149:intron | 40.0% | |
GAGAGTCGAAAGATCATTAG+TGG | + | chr1.3:15062811-15062830 | MS.gene054149:CDS | 40.0% | |
GATGTGTGTGTCTGAATTCA+TGG | + | chr1.3:15062750-15062769 | MS.gene054149:CDS | 40.0% | |
TTAGGGTTTGAGGACTATGT+TGG | + | chr1.3:15062862-15062881 | MS.gene054149:CDS | 40.0% | |
TTTGGATTTAGTCCCTTTGC+AGG | + | chr1.3:15062609-15062628 | MS.gene054149:intron | 40.0% | |
! | AAGCATGGTTGCGATAGTTT+TGG | - | chr1.3:15062906-15062925 | None:intergenic | 40.0% |
! | TGTAGTCACCTTTTACAAGC+TGG | + | chr1.3:15062278-15062297 | MS.gene054149:intron | 40.0% |
!! | TTTTGGAGGAGAACAGATAG+AGG | - | chr1.3:15062889-15062908 | None:intergenic | 40.0% |
ATATGGACCATGGGTAGGTT+AGG | + | chr1.3:15062844-15062863 | MS.gene054149:CDS | 45.0% | |
CATGCATCACTTGACGTTAG+TGG | - | chr1.3:15062258-15062277 | None:intergenic | 45.0% | |
CCATGCTTATGGGTTCAACA+AGG | + | chr1.3:15062918-15062937 | MS.gene054149:CDS | 45.0% | |
CCTTGTTGAACCCATAAGCA+TGG | - | chr1.3:15062921-15062940 | None:intergenic | 45.0% | |
CGTTCATCACAATCAAGCTC+TGG | + | chr1.3:15061223-15061242 | MS.gene054149:CDS | 45.0% | |
GAGCAGATCTGCGTATACAA+TGG | + | chr1.3:15061909-15061928 | MS.gene054149:intron | 45.0% | |
GATTTAGTCCCTTTGCAGGT+AGG | + | chr1.3:15062613-15062632 | MS.gene054149:intron | 45.0% | |
GCTTATGGGTTCAACAAGGA+TGG | + | chr1.3:15062922-15062941 | MS.gene054149:CDS | 45.0% | |
TATGGACCATGGGTAGGTTA+GGG | + | chr1.3:15062845-15062864 | MS.gene054149:CDS | 45.0% | |
!!! | CATGGTTGCGATAGTTTTGG+AGG | - | chr1.3:15062903-15062922 | None:intergenic | 45.0% |
!! | TTATAATAATAAATTAATCA+AGG | + | chr1.3:15062012-15062031 | MS.gene054149:intron | 5.0% |
!!! | TTTTATTGAAAATAATTTTA+AGG | - | chr1.3:15062521-15062540 | None:intergenic | 5.0% |
AAGGATGGATCAGGTGCTAG+TGG | + | chr1.3:15062937-15062956 | MS.gene054149:CDS | 50.0% | |
CATGGGCATCATCATCACTG+AGG | + | chr1.3:15062768-15062787 | MS.gene054149:CDS | 50.0% | |
CATGGGTAGGTTAGGGTTTG+AGG | + | chr1.3:15062852-15062871 | MS.gene054149:CDS | 50.0% | |
CGCAGTTCGTCATTCCTTGT+TGG | - | chr1.3:15062643-15062662 | None:intergenic | 50.0% | |
CTCAAACCCTAACCTACCCA+TGG | - | chr1.3:15062854-15062873 | None:intergenic | 50.0% | |
GCGGCAAACCAGCTTGTAAA+AGG | - | chr1.3:15062289-15062308 | None:intergenic | 50.0% | |
GGGTTCAACAAGGATGGATC+AGG | + | chr1.3:15062928-15062947 | MS.gene054149:CDS | 50.0% | |
TTGGACTCCCTACCTGCAAA+GGG | - | chr1.3:15062624-15062643 | None:intergenic | 50.0% | |
GTTGGACTCCCTACCTGCAA+AGG | - | chr1.3:15062625-15062644 | None:intergenic | 55.0% | |
TGCAGGTAGGGAGTCCAACA+AGG | + | chr1.3:15062626-15062645 | MS.gene054149:intron | 55.0% | |
AGTGGCTCGAGCAGTGGCAA+TGG | + | chr1.3:15062955-15062974 | MS.gene054149:CDS | 60.0% | |
GGTGCTAGTGGCTCGAGCAG+TGG | + | chr1.3:15062949-15062968 | MS.gene054149:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 15061197 | 15062987 | 15061197 | ID=MS.gene054149 |
chr1.3 | mRNA | 15061197 | 15062987 | 15061197 | ID=MS.gene054149.t1;Parent=MS.gene054149 |
chr1.3 | exon | 15061197 | 15061244 | 15061197 | ID=MS.gene054149.t1.exon1;Parent=MS.gene054149.t1 |
chr1.3 | CDS | 15061197 | 15061244 | 15061197 | ID=cds.MS.gene054149.t1;Parent=MS.gene054149.t1 |
chr1.3 | exon | 15062631 | 15062987 | 15062631 | ID=MS.gene054149.t1.exon2;Parent=MS.gene054149.t1 |
chr1.3 | CDS | 15062631 | 15062987 | 15062631 | ID=cds.MS.gene054149.t1;Parent=MS.gene054149.t1 |
Gene Sequence |
Protein sequence |