Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054152.t1 | AFK49669.1 | 87.4 | 87 | 11 | 0 | 42 | 128 | 1 | 87 | 1.00E-32 | 149.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054152.t1 | Q8VYK4 | 38.5 | 122 | 72 | 1 | 32 | 150 | 19 | 140 | 2.0e-13 | 77.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054152.t1 | I3TAX7 | 87.4 | 87 | 11 | 0 | 42 | 128 | 1 | 87 | 7.2e-33 | 149.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene054152.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054152.t1 | MTR_1g029100 | 84.444 | 90 | 14 | 0 | 42 | 131 | 1 | 90 | 4.80e-52 | 160 |
MS.gene054152.t1 | MTR_1g029070 | 42.857 | 140 | 71 | 2 | 1 | 131 | 1 | 140 | 9.38e-31 | 109 |
MS.gene054152.t1 | MTR_4g133952 | 38.525 | 122 | 67 | 2 | 16 | 132 | 29 | 147 | 2.93e-23 | 91.7 |
MS.gene054152.t1 | MTR_1g039040 | 40.179 | 112 | 56 | 2 | 29 | 140 | 2 | 102 | 7.82e-22 | 86.7 |
MS.gene054152.t1 | MTR_1g072790 | 40.594 | 101 | 50 | 1 | 48 | 138 | 34 | 134 | 8.55e-22 | 86.3 |
MS.gene054152.t1 | MTR_3g058980 | 40.404 | 99 | 58 | 1 | 48 | 146 | 32 | 129 | 1.41e-21 | 86.3 |
MS.gene054152.t1 | MTR_7g061270 | 38.318 | 107 | 63 | 1 | 48 | 151 | 31 | 137 | 3.65e-21 | 84.3 |
MS.gene054152.t1 | MTR_7g100650 | 38.318 | 107 | 63 | 1 | 48 | 151 | 31 | 137 | 4.75e-21 | 84.3 |
MS.gene054152.t1 | MTR_1g088860 | 42.353 | 85 | 49 | 0 | 48 | 132 | 41 | 125 | 7.20e-21 | 84.3 |
MS.gene054152.t1 | MTR_8g091720 | 40.594 | 101 | 59 | 1 | 48 | 148 | 33 | 132 | 8.00e-21 | 84.3 |
MS.gene054152.t1 | MTR_5g095740 | 43.529 | 85 | 48 | 0 | 48 | 132 | 28 | 112 | 1.16e-20 | 83.6 |
MS.gene054152.t1 | MTR_2g026710 | 42.697 | 89 | 50 | 1 | 48 | 136 | 22 | 109 | 1.58e-20 | 82.8 |
MS.gene054152.t1 | MTR_4g133938 | 40.659 | 91 | 54 | 0 | 42 | 132 | 18 | 108 | 1.94e-20 | 81.6 |
MS.gene054152.t1 | MTR_0392s0020 | 34.545 | 110 | 62 | 1 | 23 | 132 | 8 | 107 | 4.43e-20 | 80.9 |
MS.gene054152.t1 | MTR_4g119500 | 38.824 | 85 | 52 | 0 | 48 | 132 | 27 | 111 | 3.14e-19 | 78.6 |
MS.gene054152.t1 | MTR_8g093920 | 42.857 | 84 | 48 | 0 | 48 | 131 | 45 | 128 | 5.10e-19 | 80.1 |
MS.gene054152.t1 | MTR_1g083070 | 35.294 | 85 | 55 | 0 | 48 | 132 | 9 | 93 | 2.43e-18 | 76.3 |
MS.gene054152.t1 | MTR_5g095900 | 36.905 | 84 | 53 | 0 | 48 | 131 | 21 | 104 | 3.59e-15 | 69.3 |
MS.gene054152.t1 | MTR_1g028480 | 38.372 | 86 | 39 | 1 | 79 | 150 | 25 | 110 | 1.39e-14 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054152.t1 | AT2G38880 | 42.574 | 101 | 57 | 1 | 48 | 147 | 26 | 126 | 3.52e-23 | 89.0 |
MS.gene054152.t1 | AT2G38880 | 41.748 | 103 | 57 | 1 | 48 | 147 | 26 | 128 | 6.90e-23 | 88.2 |
MS.gene054152.t1 | AT2G38880 | 41.748 | 103 | 57 | 1 | 48 | 147 | 26 | 128 | 7.72e-23 | 88.2 |
MS.gene054152.t1 | AT2G38880 | 41.748 | 103 | 57 | 1 | 48 | 147 | 26 | 128 | 7.72e-23 | 88.2 |
MS.gene054152.t1 | AT2G38880 | 41.748 | 103 | 57 | 1 | 48 | 147 | 26 | 128 | 7.72e-23 | 88.2 |
MS.gene054152.t1 | AT2G37060 | 42.453 | 106 | 58 | 1 | 48 | 150 | 35 | 140 | 1.01e-22 | 88.6 |
MS.gene054152.t1 | AT2G37060 | 42.453 | 106 | 58 | 1 | 48 | 150 | 35 | 140 | 1.01e-22 | 88.6 |
MS.gene054152.t1 | AT2G37060 | 42.453 | 106 | 58 | 1 | 48 | 150 | 35 | 140 | 1.01e-22 | 88.6 |
MS.gene054152.t1 | AT3G53340 | 42.453 | 106 | 58 | 1 | 48 | 150 | 34 | 139 | 1.17e-22 | 88.6 |
MS.gene054152.t1 | AT3G53340 | 42.453 | 106 | 58 | 1 | 48 | 150 | 34 | 139 | 1.17e-22 | 88.6 |
MS.gene054152.t1 | AT1G21970 | 33.108 | 148 | 83 | 1 | 1 | 132 | 1 | 148 | 1.82e-21 | 87.0 |
MS.gene054152.t1 | AT4G14540 | 37.963 | 108 | 66 | 1 | 25 | 132 | 4 | 110 | 2.70e-21 | 84.7 |
MS.gene054152.t1 | AT2G38880 | 43.529 | 85 | 48 | 0 | 48 | 132 | 26 | 110 | 2.86e-21 | 83.2 |
MS.gene054152.t1 | AT2G38880 | 43.529 | 85 | 48 | 0 | 48 | 132 | 26 | 110 | 8.76e-21 | 83.6 |
MS.gene054152.t1 | AT2G38880 | 43.529 | 85 | 48 | 0 | 48 | 132 | 26 | 110 | 8.76e-21 | 83.6 |
MS.gene054152.t1 | AT5G47640 | 44.706 | 85 | 47 | 0 | 48 | 132 | 32 | 116 | 9.64e-21 | 84.0 |
MS.gene054152.t1 | AT5G47670 | 38.947 | 95 | 58 | 0 | 48 | 142 | 34 | 128 | 1.58e-20 | 84.0 |
MS.gene054152.t1 | AT2G47810 | 40.385 | 104 | 59 | 2 | 31 | 131 | 36 | 139 | 1.67e-20 | 82.8 |
MS.gene054152.t1 | AT2G38880 | 43.529 | 85 | 48 | 0 | 48 | 132 | 26 | 110 | 1.85e-20 | 82.4 |
MS.gene054152.t1 | AT2G38880 | 43.529 | 85 | 48 | 0 | 48 | 132 | 26 | 110 | 1.85e-20 | 82.4 |
MS.gene054152.t1 | AT2G38880 | 43.529 | 85 | 48 | 0 | 48 | 132 | 26 | 110 | 1.85e-20 | 82.4 |
MS.gene054152.t1 | AT5G47670 | 38.947 | 95 | 58 | 0 | 48 | 142 | 63 | 157 | 3.11e-20 | 83.6 |
MS.gene054152.t1 | AT5G47670 | 38.947 | 95 | 58 | 0 | 48 | 142 | 63 | 157 | 3.11e-20 | 83.6 |
MS.gene054152.t1 | AT3G53340 | 44.706 | 85 | 47 | 0 | 48 | 132 | 34 | 118 | 6.63e-20 | 80.1 |
MS.gene054152.t1 | AT3G53340 | 44.706 | 85 | 47 | 0 | 48 | 132 | 34 | 118 | 1.22e-18 | 77.4 |
MS.gene054152.t1 | AT3G53340 | 44.706 | 85 | 47 | 0 | 48 | 132 | 34 | 118 | 1.22e-18 | 77.4 |
MS.gene054152.t1 | AT2G13570 | 42.857 | 84 | 48 | 0 | 48 | 131 | 41 | 124 | 3.13e-18 | 78.2 |
MS.gene054152.t1 | AT1G09030 | 33.696 | 92 | 60 | 1 | 42 | 132 | 1 | 92 | 2.40e-16 | 71.2 |
Find 38 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCACTTCCTCGGCCATTGC+TGG | 0.302846 | 1.3:-15114215 | None:intergenic |
TTTCTGCTGATGATTTACTA+TGG | 0.312242 | 1.3:+15114402 | MS.gene054152:CDS |
GAGGAATCTGTTCGGTCTCT+TGG | 0.334557 | 1.3:+15114446 | MS.gene054152:CDS |
ATTTACTATGGACGATGAAT+AGG | 0.363355 | 1.3:+15114414 | MS.gene054152:CDS |
CGCAAGAACATGGATGGTTC+AGG | 0.394145 | 1.3:+15114488 | MS.gene054152:CDS |
AGGAATCTGTTCGGTCTCTT+GGG | 0.418982 | 1.3:+15114447 | MS.gene054152:CDS |
GATGAATAGGTTGGGCTTTG+AGG | 0.427694 | 1.3:+15114427 | MS.gene054152:CDS |
CGTTCGGCACACTCAAGCTT+TGG | 0.430626 | 1.3:+15113083 | MS.gene054152:CDS |
GATGTTCTACATTGGCTTGT+TGG | 0.438115 | 1.3:-15114370 | None:intergenic |
CTATGGACGATGAATAGGTT+GGG | 0.452990 | 1.3:+15114419 | MS.gene054152:CDS |
ACCAACAACAACACTGGCAT+TGG | 0.458777 | 1.3:+15114170 | MS.gene054152:CDS |
GCCAGTGTTGTTGTTGGTGG+TGG | 0.460032 | 1.3:-15114165 | None:intergenic |
TCCAATGCCAGTGTTGTTGT+TGG | 0.470529 | 1.3:-15114171 | None:intergenic |
TCAACGTTGGTCATCATCAT+TGG | 0.472149 | 1.3:-15114531 | None:intergenic |
GAACGGTTGTTGTTAGATGA+AGG | 0.489970 | 1.3:-15113065 | None:intergenic |
AATGCCAGTGTTGTTGTTGG+TGG | 0.494945 | 1.3:-15114168 | None:intergenic |
GACTCTTGTCACATGACTGA+TGG | 0.498388 | 1.3:-15114243 | None:intergenic |
TGGGCTTTGAGGAATCTGTT+CGG | 0.518806 | 1.3:+15114438 | MS.gene054152:CDS |
TTCATCTAACAACAACCGTT+CGG | 0.526767 | 1.3:+15113067 | MS.gene054152:CDS |
TCATCAGTGATTATTGTGTC+TGG | 0.528332 | 1.3:-15114284 | None:intergenic |
ACTATGGACGATGAATAGGT+TGG | 0.532041 | 1.3:+15114418 | MS.gene054152:CDS |
CCATTGCTGGAGTTGAATGT+TGG | 0.538932 | 1.3:-15114202 | None:intergenic |
GATGGGCATACGCACTTCCT+CGG | 0.539534 | 1.3:-15114225 | None:intergenic |
TTCAACTCCAGCAATGGCCG+AGG | 0.555161 | 1.3:+15114208 | MS.gene054152:CDS |
AGTCATTTGATGTTCTACAT+TGG | 0.556175 | 1.3:-15114378 | None:intergenic |
AATAATCACTGATGATGCTA+AGG | 0.557692 | 1.3:+15114292 | MS.gene054152:CDS |
ACTCTTGTCACATGACTGAT+GGG | 0.557969 | 1.3:-15114242 | None:intergenic |
AACTATCGCAAGAACATGGA+TGG | 0.564685 | 1.3:+15114482 | MS.gene054152:CDS |
TGTGTCTAAATTTATGAACA+AGG | 0.573477 | 1.3:+15114331 | MS.gene054152:CDS |
ATGGATGGTTCAGGTGCTAG+TGG | 0.576300 | 1.3:+15114497 | MS.gene054152:CDS |
ACCACCACCAACAACAACAC+TGG | 0.591133 | 1.3:+15114164 | MS.gene054152:CDS |
CAACACTGGCATTGGAACTG+AGG | 0.595180 | 1.3:+15114178 | MS.gene054152:CDS |
CCAACATTCAACTCCAGCAA+TGG | 0.604613 | 1.3:+15114202 | MS.gene054152:CDS |
CCATAATTTCATATCAACGT+TGG | 0.610658 | 1.3:-15114544 | None:intergenic |
TATGAACAAGGTCACAAGTG+AGG | 0.614031 | 1.3:+15114343 | MS.gene054152:CDS |
TCAGTGATTATTGTGTCTGG+TGG | 0.634070 | 1.3:-15114281 | None:intergenic |
TTCTAAAGCAGTATGGAGCG+TGG | 0.645240 | 1.3:+15113038 | None:intergenic |
CAAAGCTTGAGTGTGCCGAA+CGG | 0.668304 | 1.3:-15113082 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATAAATTAATTAATTA+AGG | + | chr1.3:15113686-15113705 | MS.gene054152:intron | 0.0% |
!! | TAATAAATTAAAAATATTAA+AGG | - | chr1.3:15113485-15113504 | None:intergenic | 0.0% |
!! | TTATTATAATTAATATTATA+TGG | - | chr1.3:15113671-15113690 | None:intergenic | 0.0% |
!! | ATTAAAAATAATAAAATACG+AGG | - | chr1.3:15113168-15113187 | None:intergenic | 10.0% |
!! | AAATTAAGTAAAAGAGATAG+AGG | - | chr1.3:15113454-15113473 | None:intergenic | 20.0% |
!!! | ACTAAGATACAAACATATTT+TGG | - | chr1.3:15113867-15113886 | None:intergenic | 20.0% |
!!! | ATCTTGGAATTAATTTTGTT+CGG | + | chr1.3:15113572-15113591 | MS.gene054152:intron | 20.0% |
!!! | CTTTTCTTCTTTTTAATCTA+AGG | - | chr1.3:15113983-15114002 | None:intergenic | 20.0% |
!!! | TACCAAATCTATTAATTTTG+AGG | + | chr1.3:15114074-15114093 | MS.gene054152:intron | 20.0% |
!!! | TGAATGAAATTTTGATTGAA+GGG | + | chr1.3:15113396-15113415 | MS.gene054152:intron | 20.0% |
!!! | TTGAATGAAATTTTGATTGA+AGG | + | chr1.3:15113395-15113414 | MS.gene054152:intron | 20.0% |
! | AACAAAACTGACGTATTTAA+AGG | - | chr1.3:15113785-15113804 | None:intergenic | 25.0% |
! | AAGAAATAAAGTGAGAGAAA+AGG | + | chr1.3:15113736-15113755 | MS.gene054152:intron | 25.0% |
! | AATCTAATAGAGCAATTAAG+GGG | - | chr1.3:15113294-15113313 | None:intergenic | 25.0% |
! | ACAAAACTGACGTATTTAAA+GGG | - | chr1.3:15113784-15113803 | None:intergenic | 25.0% |
! | ACTTTGTAAAACATTGAATC+CGG | + | chr1.3:15113195-15113214 | MS.gene054152:intron | 25.0% |
! | AGAATCTAATAGAGCAATTA+AGG | - | chr1.3:15113296-15113315 | None:intergenic | 25.0% |
! | ATATAATTGTGCATCACTTA+TGG | + | chr1.3:15113357-15113376 | MS.gene054152:intron | 25.0% |
! | CTCCTCAAAATTAATAGATT+TGG | - | chr1.3:15114079-15114098 | None:intergenic | 25.0% |
! | GAATCTAATAGAGCAATTAA+GGG | - | chr1.3:15113295-15113314 | None:intergenic | 25.0% |
! | TATAATTGTGCATCACTTAT+GGG | + | chr1.3:15113358-15113377 | MS.gene054152:intron | 25.0% |
! | TCTACTATGAAATTAGATAC+CGG | - | chr1.3:15113217-15113236 | None:intergenic | 25.0% |
! | TGTGTCTAAATTTATGAACA+AGG | + | chr1.3:15114331-15114350 | MS.gene054152:CDS | 25.0% |
!! | CTAAAAAATGTTTGAGATCT+TGG | + | chr1.3:15113556-15113575 | MS.gene054152:intron | 25.0% |
!! | GTGTGAGTGTTATAAATTTT+GGG | + | chr1.3:15113514-15113533 | MS.gene054152:intron | 25.0% |
!! | TGTGAGTGTTATAAATTTTG+GGG | + | chr1.3:15113515-15113534 | MS.gene054152:intron | 25.0% |
!! | TGTGTGAGTGTTATAAATTT+TGG | + | chr1.3:15113513-15113532 | MS.gene054152:intron | 25.0% |
!! | TTCTTCTTTTTAATCTAAGG+TGG | - | chr1.3:15113980-15113999 | None:intergenic | 25.0% |
!!! | AGCTAAGATGTTTTTAATAG+AGG | - | chr1.3:15114135-15114154 | None:intergenic | 25.0% |
!!! | GAATGAAATTTTGATTGAAG+GGG | + | chr1.3:15113397-15113416 | MS.gene054152:intron | 25.0% |
AAAGAGATAGAGGTCAAATA+TGG | - | chr1.3:15113444-15113463 | None:intergenic | 30.0% | |
AAATAAAGTGAGAGAAAAGG+TGG | + | chr1.3:15113739-15113758 | MS.gene054152:intron | 30.0% | |
AAGAGATAGAGGTCAAATAT+GGG | - | chr1.3:15113443-15113462 | None:intergenic | 30.0% | |
AATAAAGTGAGAGAAAAGGT+GGG | + | chr1.3:15113740-15113759 | MS.gene054152:intron | 30.0% | |
AGTCATTTGATGTTCTACAT+TGG | - | chr1.3:15114381-15114400 | None:intergenic | 30.0% | |
ATTGCTCTATTAGATTCTCA+AGG | + | chr1.3:15113298-15113317 | MS.gene054152:intron | 30.0% | |
ATTTACTATGGACGATGAAT+AGG | + | chr1.3:15114414-15114433 | MS.gene054152:CDS | 30.0% | |
CAAAACTGACGTATTTAAAG+GGG | - | chr1.3:15113783-15113802 | None:intergenic | 30.0% | |
GGTGGGTGAAAAAATAAATA+AGG | + | chr1.3:15113757-15113776 | MS.gene054152:intron | 30.0% | |
TTTCTGCTGATGATTTACTA+TGG | + | chr1.3:15114402-15114421 | MS.gene054152:CDS | 30.0% | |
! | AATAATCACTGATGATGCTA+AGG | + | chr1.3:15114292-15114311 | MS.gene054152:CDS | 30.0% |
CAAAAACTATCGCAAGAACA+TGG | + | chr1.3:15114478-15114497 | MS.gene054152:CDS | 35.0% | |
TCATCAGTGATTATTGTGTC+TGG | - | chr1.3:15114287-15114306 | None:intergenic | 35.0% | |
TTCATCTAACAACAACCGTT+CGG | + | chr1.3:15113067-15113086 | MS.gene054152:CDS | 35.0% | |
TTGGTTGTCTGTGTGTATAT+TGG | - | chr1.3:15113848-15113867 | None:intergenic | 35.0% | |
! | TGTAGTCACATTTTACAAGC+TGG | + | chr1.3:15113950-15113969 | MS.gene054152:intron | 35.0% |
! | TGTTCTTGCGATAGTTTTTG+AGG | - | chr1.3:15114478-15114497 | None:intergenic | 35.0% |
AACTATCGCAAGAACATGGA+TGG | + | chr1.3:15114482-15114501 | MS.gene054152:CDS | 40.0% | |
ACTATGGACGATGAATAGGT+TGG | + | chr1.3:15114418-15114437 | MS.gene054152:CDS | 40.0% | |
ACTCTTGTCACATGACTGAT+GGG | - | chr1.3:15114245-15114264 | None:intergenic | 40.0% | |
CTATGGACGATGAATAGGTT+GGG | + | chr1.3:15114419-15114438 | MS.gene054152:CDS | 40.0% | |
GGGCAAGAATGATCTAACTT+GGG | + | chr1.3:15113334-15113353 | MS.gene054152:intron | 40.0% | |
TATGAACAAGGTCACAAGTG+AGG | + | chr1.3:15114343-15114362 | MS.gene054152:CDS | 40.0% | |
TCAACGTTGGTCATCATCAT+TGG | - | chr1.3:15114534-15114553 | None:intergenic | 40.0% | |
TCAGTGATTATTGTGTCTGG+TGG | - | chr1.3:15114284-15114303 | None:intergenic | 40.0% | |
! | GAACGGTTGTTGTTAGATGA+AGG | - | chr1.3:15113068-15113087 | None:intergenic | 40.0% |
! | TCTCAAGGCATTATTAGCCT+CGG | + | chr1.3:15113313-15113332 | MS.gene054152:intron | 40.0% |
!! | GATGTTCTACATTGGCTTGT+TGG | - | chr1.3:15114373-15114392 | None:intergenic | 40.0% |
ACCAACAACAACACTGGCAT+TGG | + | chr1.3:15114170-15114189 | MS.gene054152:CDS | 45.0% | |
AGGAATCTGTTCGGTCTCTT+GGG | + | chr1.3:15114447-15114466 | MS.gene054152:CDS | 45.0% | |
AGTTAGATCATTCTTGCCCG+AGG | - | chr1.3:15113333-15113352 | None:intergenic | 45.0% | |
CCAACATTCAACTCCAGCAA+TGG | + | chr1.3:15114202-15114221 | MS.gene054152:CDS | 45.0% | |
CCATTGCTGGAGTTGAATGT+TGG | - | chr1.3:15114205-15114224 | None:intergenic | 45.0% | |
CGGGCAAGAATGATCTAACT+TGG | + | chr1.3:15113333-15113352 | MS.gene054152:intron | 45.0% | |
GACTCTTGTCACATGACTGA+TGG | - | chr1.3:15114246-15114265 | None:intergenic | 45.0% | |
! | AATGCCAGTGTTGTTGTTGG+TGG | - | chr1.3:15114171-15114190 | None:intergenic | 45.0% |
! | CTCAAGGCATTATTAGCCTC+GGG | + | chr1.3:15113314-15113333 | MS.gene054152:intron | 45.0% |
! | GATGAATAGGTTGGGCTTTG+AGG | + | chr1.3:15114427-15114446 | MS.gene054152:CDS | 45.0% |
! | TCCAATGCCAGTGTTGTTGT+TGG | - | chr1.3:15114174-15114193 | None:intergenic | 45.0% |
!! | TGGGCTTTGAGGAATCTGTT+CGG | + | chr1.3:15114438-15114457 | MS.gene054152:CDS | 45.0% |
ACCACCACCAACAACAACAC+TGG | + | chr1.3:15114164-15114183 | MS.gene054152:CDS | 50.0% | |
ATGGATGGTTCAGGTGCTAG+TGG | + | chr1.3:15114497-15114516 | MS.gene054152:CDS | 50.0% | |
CAAAGCTTGAGTGTGCCGAA+CGG | - | chr1.3:15113085-15113104 | None:intergenic | 50.0% | |
CGCAAGAACATGGATGGTTC+AGG | + | chr1.3:15114488-15114507 | MS.gene054152:CDS | 50.0% | |
GAGCAGATCTGCGTATGCAA+TGG | + | chr1.3:15113594-15113613 | MS.gene054152:intron | 50.0% | |
GAGGAATCTGTTCGGTCTCT+TGG | + | chr1.3:15114446-15114465 | MS.gene054152:CDS | 50.0% | |
! | CAACACTGGCATTGGAACTG+AGG | + | chr1.3:15114178-15114197 | MS.gene054152:CDS | 50.0% |
CGTTCGGCACACTCAAGCTT+TGG | + | chr1.3:15113083-15113102 | MS.gene054152:CDS | 55.0% | |
GATGGGCATACGCACTTCCT+CGG | - | chr1.3:15114228-15114247 | None:intergenic | 55.0% | |
TTCAACTCCAGCAATGGCCG+AGG | + | chr1.3:15114208-15114227 | MS.gene054152:CDS | 55.0% | |
! | GCCAGTGTTGTTGTTGGTGG+TGG | - | chr1.3:15114168-15114187 | None:intergenic | 55.0% |
CGCACTTCCTCGGCCATTGC+TGG | - | chr1.3:15114218-15114237 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 15113050 | 15114553 | 15113050 | ID=MS.gene054152 |
chr1.3 | mRNA | 15113050 | 15114553 | 15113050 | ID=MS.gene054152.t1;Parent=MS.gene054152 |
chr1.3 | exon | 15113050 | 15113104 | 15113050 | ID=MS.gene054152.t1.exon1;Parent=MS.gene054152.t1 |
chr1.3 | CDS | 15113050 | 15113104 | 15113050 | ID=cds.MS.gene054152.t1;Parent=MS.gene054152.t1 |
chr1.3 | exon | 15114153 | 15114553 | 15114153 | ID=MS.gene054152.t1.exon2;Parent=MS.gene054152.t1 |
chr1.3 | CDS | 15114153 | 15114553 | 15114153 | ID=cds.MS.gene054152.t1;Parent=MS.gene054152.t1 |
Gene Sequence |
Protein sequence |