Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054161.t1 | RHN73282.1 | 91 | 721 | 65 | 0 | 1 | 721 | 1 | 721 | 0.00E+00 | 1342 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054161.t1 | Q9SWG3 | 34.6 | 642 | 395 | 11 | 1 | 631 | 55 | 682 | 3.8e-108 | 394.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054161.t1 | A0A396J7J0 | 91.0 | 721 | 65 | 0 | 1 | 721 | 1 | 721 | 0.0e+00 | 1342.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene054161.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054161.t1 | MTR_2g090105 | 57.711 | 201 | 46 | 4 | 575 | 775 | 16 | 177 | 5.79e-63 | 209 |
MS.gene054161.t1 | MTR_6g051425 | 36.318 | 201 | 127 | 1 | 63 | 262 | 91 | 291 | 3.59e-37 | 142 |
MS.gene054161.t1 | MTR_7g446060 | 66.667 | 90 | 30 | 0 | 74 | 163 | 2 | 91 | 2.05e-34 | 128 |
MS.gene054161.t1 | MTR_7g031620 | 59.259 | 81 | 33 | 0 | 3 | 83 | 2 | 82 | 2.69e-26 | 103 |
MS.gene054161.t1 | MTR_5g023310 | 37.975 | 158 | 31 | 2 | 127 | 284 | 15 | 105 | 1.96e-25 | 101 |
MS.gene054161.t1 | MTR_1g008290 | 38.931 | 131 | 77 | 2 | 59 | 189 | 17 | 144 | 3.20e-21 | 91.3 |
MS.gene054161.t1 | MTR_4g035820 | 30.000 | 250 | 154 | 7 | 3 | 237 | 81 | 324 | 7.79e-21 | 98.2 |
MS.gene054161.t1 | MTR_4g035820 | 33.113 | 151 | 93 | 4 | 328 | 473 | 283 | 430 | 1.71e-11 | 68.2 |
MS.gene054161.t1 | MTR_0558s0020 | 27.099 | 262 | 157 | 7 | 1 | 233 | 40 | 296 | 9.73e-21 | 94.0 |
MS.gene054161.t1 | MTR_0856s0010 | 36.585 | 123 | 77 | 1 | 1 | 122 | 38 | 160 | 5.00e-19 | 85.1 |
MS.gene054161.t1 | MTR_8g446020 | 32.414 | 145 | 97 | 1 | 90 | 233 | 112 | 256 | 1.38e-18 | 86.7 |
MS.gene054161.t1 | MTR_1g070355 | 29.114 | 237 | 149 | 8 | 3 | 227 | 80 | 309 | 1.01e-15 | 81.6 |
MS.gene054161.t1 | MTR_6g090505 | 24.779 | 226 | 154 | 4 | 61 | 272 | 57 | 280 | 5.99e-15 | 77.8 |
MS.gene054161.t1 | MTR_7g446510 | 29.193 | 161 | 112 | 2 | 83 | 241 | 169 | 329 | 2.88e-14 | 75.1 |
MS.gene054161.t1 | MTR_7g446480 | 29.814 | 161 | 111 | 2 | 83 | 241 | 154 | 314 | 3.15e-14 | 75.1 |
MS.gene054161.t1 | MTR_1g083640 | 25.322 | 233 | 140 | 7 | 1 | 204 | 55 | 282 | 1.04e-12 | 69.7 |
MS.gene054161.t1 | MTR_6g022070 | 28.082 | 146 | 101 | 1 | 287 | 432 | 1 | 142 | 9.14e-12 | 67.8 |
MS.gene054161.t1 | MTR_7g446520 | 25.131 | 191 | 135 | 3 | 47 | 235 | 131 | 315 | 1.67e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054161.t1 | AT4G15090 | 35.762 | 604 | 372 | 9 | 1 | 598 | 55 | 648 | 1.73e-124 | 392 |
MS.gene054161.t1 | AT4G15090 | 35.762 | 604 | 372 | 9 | 1 | 598 | 55 | 648 | 1.73e-124 | 392 |
MS.gene054161.t1 | AT4G15090 | 35.762 | 604 | 372 | 9 | 1 | 598 | 55 | 648 | 1.73e-124 | 392 |
MS.gene054161.t1 | AT4G15090 | 35.762 | 604 | 372 | 9 | 1 | 598 | 55 | 648 | 1.73e-124 | 392 |
MS.gene054161.t1 | AT4G15090 | 35.762 | 604 | 372 | 9 | 1 | 598 | 55 | 648 | 1.73e-124 | 392 |
MS.gene054161.t1 | AT4G38180 | 35.035 | 568 | 347 | 8 | 1 | 556 | 77 | 634 | 9.15e-115 | 366 |
MS.gene054161.t1 | AT1G76320 | 32.039 | 721 | 438 | 17 | 1 | 692 | 1 | 698 | 1.76e-111 | 355 |
MS.gene054161.t1 | AT1G76320 | 35.211 | 568 | 342 | 9 | 1 | 561 | 1 | 549 | 2.98e-111 | 353 |
MS.gene054161.t1 | AT1G76320 | 35.211 | 568 | 342 | 9 | 1 | 561 | 1 | 549 | 6.01e-111 | 354 |
MS.gene054161.t1 | AT1G76320 | 35.211 | 568 | 342 | 9 | 1 | 561 | 1 | 549 | 6.01e-111 | 354 |
MS.gene054161.t1 | AT3G22170 | 34.489 | 577 | 331 | 7 | 1 | 559 | 74 | 621 | 4.12e-109 | 352 |
MS.gene054161.t1 | AT3G22170 | 34.489 | 577 | 331 | 7 | 1 | 559 | 74 | 621 | 4.12e-109 | 352 |
MS.gene054161.t1 | AT1G52520 | 34.806 | 566 | 345 | 12 | 1 | 557 | 89 | 639 | 9.56e-104 | 334 |
MS.gene054161.t1 | AT1G80010 | 33.622 | 577 | 356 | 13 | 1 | 560 | 99 | 665 | 1.69e-94 | 310 |
MS.gene054161.t1 | AT4G19990 | 32.765 | 586 | 319 | 11 | 3 | 561 | 27 | 564 | 3.15e-91 | 302 |
MS.gene054161.t1 | AT4G19990 | 32.765 | 586 | 319 | 11 | 3 | 561 | 27 | 564 | 3.15e-91 | 302 |
MS.gene054161.t1 | AT4G19990 | 32.765 | 586 | 319 | 11 | 3 | 561 | 27 | 564 | 3.18e-91 | 302 |
MS.gene054161.t1 | AT4G19990 | 32.765 | 586 | 319 | 11 | 3 | 561 | 27 | 564 | 3.44e-91 | 303 |
MS.gene054161.t1 | AT4G19990 | 32.765 | 586 | 319 | 11 | 3 | 561 | 27 | 564 | 3.44e-91 | 303 |
MS.gene054161.t1 | AT4G19990 | 32.765 | 586 | 319 | 11 | 3 | 561 | 41 | 578 | 3.72e-91 | 303 |
MS.gene054161.t1 | AT4G19990 | 33.333 | 546 | 310 | 10 | 22 | 561 | 10 | 507 | 9.79e-89 | 294 |
MS.gene054161.t1 | AT2G27110 | 31.858 | 565 | 348 | 11 | 1 | 561 | 53 | 584 | 9.80e-84 | 285 |
MS.gene054161.t1 | AT2G27110 | 31.858 | 565 | 348 | 11 | 1 | 561 | 53 | 584 | 9.80e-84 | 285 |
MS.gene054161.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 173 | 553 | 176 | 550 | 1.57e-82 | 279 |
MS.gene054161.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 173 | 553 | 135 | 509 | 2.83e-82 | 279 |
MS.gene054161.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 173 | 553 | 176 | 550 | 3.20e-82 | 280 |
MS.gene054161.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 173 | 553 | 176 | 550 | 3.20e-82 | 280 |
MS.gene054161.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 173 | 553 | 135 | 509 | 3.26e-82 | 278 |
MS.gene054161.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 173 | 553 | 176 | 550 | 3.45e-82 | 279 |
MS.gene054161.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 173 | 553 | 176 | 550 | 3.45e-82 | 279 |
MS.gene054161.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 173 | 553 | 176 | 550 | 3.45e-82 | 279 |
MS.gene054161.t1 | AT2G27110 | 35.535 | 439 | 262 | 8 | 121 | 556 | 14 | 434 | 5.49e-82 | 276 |
MS.gene054161.t1 | AT3G06250 | 30.824 | 558 | 333 | 13 | 1 | 554 | 194 | 702 | 1.74e-75 | 260 |
MS.gene054161.t1 | AT3G06250 | 30.824 | 558 | 333 | 13 | 1 | 554 | 194 | 702 | 1.74e-75 | 260 |
MS.gene054161.t1 | AT3G06250 | 30.824 | 558 | 333 | 13 | 1 | 554 | 194 | 702 | 1.74e-75 | 260 |
MS.gene054161.t1 | AT4G38170 | 34.483 | 406 | 248 | 6 | 168 | 568 | 19 | 411 | 3.51e-75 | 254 |
MS.gene054161.t1 | AT5G18960 | 31.843 | 559 | 329 | 17 | 1 | 554 | 215 | 726 | 1.00e-74 | 258 |
MS.gene054161.t1 | AT5G18960 | 31.843 | 559 | 329 | 17 | 1 | 554 | 215 | 726 | 1.00e-74 | 258 |
MS.gene054161.t1 | AT1G10240 | 29.514 | 576 | 340 | 22 | 11 | 553 | 62 | 604 | 3.91e-64 | 227 |
MS.gene054161.t1 | AT1G10240 | 29.514 | 576 | 340 | 22 | 11 | 553 | 62 | 604 | 3.91e-64 | 227 |
MS.gene054161.t1 | AT5G28530 | 26.562 | 576 | 378 | 18 | 3 | 554 | 61 | 615 | 1.36e-46 | 177 |
MS.gene054161.t1 | AT5G28530 | 26.562 | 576 | 378 | 18 | 3 | 554 | 61 | 615 | 1.36e-46 | 177 |
MS.gene054161.t1 | AT5G28530 | 26.552 | 580 | 377 | 19 | 3 | 554 | 61 | 619 | 7.57e-46 | 175 |
MS.gene054161.t1 | AT5G28530 | 28.125 | 320 | 207 | 10 | 239 | 554 | 252 | 552 | 7.02e-28 | 120 |
MS.gene054161.t1 | AT5G28530 | 27.640 | 322 | 210 | 10 | 239 | 554 | 252 | 556 | 4.47e-27 | 117 |
Find 118 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCAGGCTCCTTATTATTC+TGG | 0.095702 | 6.1:+27937159 | MS.gene054161:intron |
CGTGCCATCTACTTATATTT+TGG | 0.129976 | 6.1:+27936166 | MS.gene054161:CDS |
CATATGTAAGGGACACATTT+TGG | 0.131035 | 6.1:+27935661 | MS.gene054161:CDS |
TGCCACTTGTTTGAATTTAA+AGG | 0.135288 | 6.1:+27936089 | MS.gene054161:CDS |
CTTTACCAATGCAAAGTTTC+AGG | 0.186559 | 6.1:+27935896 | MS.gene054161:CDS |
GTCGATTACGAAATGTGTTT+TGG | 0.243742 | 6.1:+27935124 | MS.gene054161:CDS |
CAATCTTCTTCTATAATTCT+AGG | 0.251982 | 6.1:-27936401 | None:intergenic |
TATGCTCAGCGGGTAGGTTT+TGG | 0.263362 | 6.1:+27934589 | MS.gene054161:CDS |
TGCAGGCTCCTTATTATTCT+GGG | 0.269879 | 6.1:+27937160 | MS.gene054161:intron |
TCACCAAGATGTTCTTGATT+TGG | 0.273818 | 6.1:-27937001 | None:intergenic |
TGTTGAAGCAAATTCATAAA+AGG | 0.279740 | 6.1:-27936294 | None:intergenic |
AGGGCCGCATATGAATATTT+TGG | 0.300831 | 6.1:+27935162 | MS.gene054161:CDS |
CCTTTACTTCGAGCCAGTTT+AGG | 0.301900 | 6.1:-27936455 | None:intergenic |
TTGCTTCAGTGTTGTCTTTG+AGG | 0.321090 | 6.1:-27935745 | None:intergenic |
GATCTGAACAAGTAGCATTA+TGG | 0.326929 | 6.1:-27937191 | None:intergenic |
AATTTCATACTCACCTCTTC+AGG | 0.327852 | 6.1:-27936587 | None:intergenic |
CAATACAGAAATACTTTGTT+AGG | 0.333443 | 6.1:+27935049 | MS.gene054161:CDS |
TTTCAACAGATTGGAGGGTT+TGG | 0.335508 | 6.1:+27935962 | MS.gene054161:CDS |
TACTTGTTCAGATCTGTTAT+AGG | 0.336018 | 6.1:+27937200 | MS.gene054161:CDS |
AGGAAATTACTGAGTATTAC+AGG | 0.339510 | 6.1:+27934563 | MS.gene054161:CDS |
TGATCAGTGATTATGGCATT+TGG | 0.345022 | 6.1:-27935369 | None:intergenic |
CCTTGTGCTGGGATGTCATT+TGG | 0.364680 | 6.1:+27934532 | None:intergenic |
TCAAGACGGAGCAATGAAAA+AGG | 0.370440 | 6.1:+27935389 | MS.gene054161:CDS |
CTAGGAGATGTTTCATTACA+TGG | 0.377943 | 6.1:-27936383 | None:intergenic |
AATGTATGGAGTAGTGAAAA+TGG | 0.393540 | 6.1:+27936950 | MS.gene054161:CDS |
GATGAAAGATATTGTGTTCA+TGG | 0.400462 | 6.1:+27936028 | MS.gene054161:CDS |
TACCATTCTTGATCCTAAAC+TGG | 0.409646 | 6.1:+27936442 | MS.gene054161:CDS |
TCTCAACTTGGTGATGGAAT+TGG | 0.412917 | 6.1:+27936725 | MS.gene054161:CDS |
CTGAAACTTTGCATTGGTAA+AGG | 0.413276 | 6.1:-27935895 | None:intergenic |
CTCGTCATCGGTGGTGCTTA+TGG | 0.417009 | 6.1:+27935436 | MS.gene054161:CDS |
TCCTTGGTCGGTGAAGCTAA+TGG | 0.421297 | 6.1:+27934937 | MS.gene054161:CDS |
TCATGCATGTTTCAACAGAT+TGG | 0.428105 | 6.1:+27935953 | MS.gene054161:CDS |
ATTTAGTGAAAGTGATGAAC+TGG | 0.429598 | 6.1:+27936336 | MS.gene054161:CDS |
ATATTCTAGTCAAGTAAATC+AGG | 0.431513 | 6.1:+27936778 | MS.gene054161:CDS |
CGACTTTCGTTCGTTTAATA+CGG | 0.431692 | 6.1:+27935824 | MS.gene054161:CDS |
ATTTGTTGAACGGCATCGTT+GGG | 0.432273 | 6.1:+27935632 | MS.gene054161:CDS |
TCATGGTCAGTCAATGTTGT+TGG | 0.434993 | 6.1:+27935263 | MS.gene054161:CDS |
ATATTTATTTGTTAAGTAAG+TGG | 0.436838 | 6.1:-27935205 | None:intergenic |
CCTAAACTGGCTCGAAGTAA+AGG | 0.438698 | 6.1:+27936455 | MS.gene054161:CDS |
CTAAAATATCGTGCTTTCCC+TGG | 0.443457 | 6.1:-27934829 | None:intergenic |
AGCAGGAGCAGAACAATGTA+TGG | 0.443830 | 6.1:+27936936 | MS.gene054161:intron |
GTTGGGTTCCTGCATATGTA+AGG | 0.449314 | 6.1:+27935649 | MS.gene054161:CDS |
TTTATGACCCCAGAATAATA+AGG | 0.449844 | 6.1:-27937168 | None:intergenic |
TCCGTCTTGATCAGTGATTA+TGG | 0.451000 | 6.1:-27935376 | None:intergenic |
CATGGTCAGTCAATGTTGTT+GGG | 0.451390 | 6.1:+27935264 | MS.gene054161:CDS |
CTTTGTGTGCTTAAGCTCAC+AGG | 0.451912 | 6.1:+27936131 | MS.gene054161:CDS |
CCTTGGTCGGTGAAGCTAAT+GGG | 0.452698 | 6.1:+27934938 | MS.gene054161:CDS |
CATAATCATGATCTAAGTCC+AGG | 0.457184 | 6.1:+27934811 | MS.gene054161:CDS |
CATGACAATGAATGGTTGAA+AGG | 0.459474 | 6.1:+27935606 | MS.gene054161:CDS |
AAAGTTTCAGGAATTCCAAT+TGG | 0.459609 | 6.1:+27935908 | MS.gene054161:CDS |
GGGTATGAGAATCTCACATT+TGG | 0.461849 | 6.1:+27934958 | MS.gene054161:CDS |
CGTGCCAAAATATAAGTAGA+TGG | 0.473699 | 6.1:-27936170 | None:intergenic |
TCATAGAAGCTATTTCCAAT+TGG | 0.475525 | 6.1:-27935923 | None:intergenic |
TGCCTTTAAATTCAAACAAG+TGG | 0.476652 | 6.1:-27936091 | None:intergenic |
AAACAACCAAGTAAAAGTTT+CGG | 0.479809 | 6.1:-27935313 | None:intergenic |
AATCCAAATCAAGAACATCT+TGG | 0.480865 | 6.1:+27936998 | MS.gene054161:CDS |
CTAAACTGGCTCGAAGTAAA+GGG | 0.481198 | 6.1:+27936456 | MS.gene054161:CDS |
ATTGCTTGTATTAGTCACTT+TGG | 0.482461 | 6.1:+27935849 | MS.gene054161:CDS |
CACCACCGATGACGAGCCTT+CGG | 0.488875 | 6.1:-27935429 | None:intergenic |
TAGGATCAAGAATGGTAGCT+TGG | 0.489659 | 6.1:-27936436 | None:intergenic |
TTACTTGGTTGTTTAAGACT+TGG | 0.489960 | 6.1:+27935322 | MS.gene054161:CDS |
TATTTGTTGAACGGCATCGT+TGG | 0.490805 | 6.1:+27935631 | MS.gene054161:CDS |
TTTAAATTCAAACAAGTGGC+AGG | 0.494534 | 6.1:-27936087 | None:intergenic |
ACTCCAACAAAAGGAGCAAA+AGG | 0.499554 | 6.1:-27935234 | None:intergenic |
ATGTTCTTGATTTGGATTGA+AGG | 0.500280 | 6.1:-27936993 | None:intergenic |
ATTGAAAGATAAAATTGAAA+AGG | 0.501824 | 6.1:+27935791 | MS.gene054161:CDS |
ATGACAATGAATGGTTGAAA+GGG | 0.502339 | 6.1:+27935607 | MS.gene054161:CDS |
AATGTGTCCCTTACATATGC+AGG | 0.504374 | 6.1:-27935657 | None:intergenic |
TGTTCTTGATTTGGATTGAA+GGG | 0.505856 | 6.1:-27936992 | None:intergenic |
TTGGTTGTTTAAGACTTGGT+TGG | 0.512889 | 6.1:+27935326 | MS.gene054161:CDS |
TTTGTTGGAGTAAACCATCA+TGG | 0.519035 | 6.1:+27935246 | MS.gene054161:CDS |
TTTGGGCAGATGCAAGATGT+AGG | 0.521046 | 6.1:+27935142 | MS.gene054161:CDS |
AGCCAGTTTAGGATCAAGAA+TGG | 0.525245 | 6.1:-27936444 | None:intergenic |
TGATGGTTTACTCCAACAAA+AGG | 0.525957 | 6.1:-27935243 | None:intergenic |
TCTTTCCGAAGGCTCGTCAT+CGG | 0.529464 | 6.1:+27935424 | MS.gene054161:CDS |
AGGAATTATGCTCAGCGGGT+AGG | 0.535514 | 6.1:+27934583 | MS.gene054161:CDS |
TGCATGTTTCAACAGATTGG+AGG | 0.536104 | 6.1:+27935956 | MS.gene054161:CDS |
TTGGGCAGATGCAAGATGTA+GGG | 0.539729 | 6.1:+27935143 | MS.gene054161:CDS |
AAGGGCGTCCTCCTTCGAAA+AGG | 0.541721 | 6.1:+27936474 | MS.gene054161:CDS |
GCATGTTTCAACAGATTGGA+GGG | 0.542407 | 6.1:+27935957 | MS.gene054161:CDS |
GAATTCCTGAAACTTTGCAT+TGG | 0.542586 | 6.1:-27935901 | None:intergenic |
TTACAGGAATTATGCTCAGC+GGG | 0.544325 | 6.1:+27934579 | MS.gene054161:CDS |
CGTATTAAACGAACGAAAGT+CGG | 0.545492 | 6.1:-27935823 | None:intergenic |
TGAAAGGGATATTTGTTGAA+CGG | 0.547538 | 6.1:+27935622 | MS.gene054161:CDS |
GCAGGCTCCTTATTATTCTG+GGG | 0.554345 | 6.1:+27937161 | MS.gene054161:intron |
TCTTGACCTCTAGATATGCA+TGG | 0.555627 | 6.1:-27936677 | None:intergenic |
CTTGACCTCTAGATATGCAT+GGG | 0.557675 | 6.1:-27936676 | None:intergenic |
TTAGAACTCAATGATCAAGC+TGG | 0.558672 | 6.1:+27934889 | MS.gene054161:CDS |
ACAACATTGACTGACCATGA+TGG | 0.560012 | 6.1:-27935260 | None:intergenic |
TACAGATCTCAACTTGGTGA+TGG | 0.562461 | 6.1:+27936719 | MS.gene054161:CDS |
AAGTAAGACGATTACGACTT+GGG | 0.562674 | 6.1:+27935010 | MS.gene054161:CDS |
AATTGAGGTTGTCTTTCCGA+AGG | 0.571191 | 6.1:+27935413 | MS.gene054161:CDS |
AGACGATTACGACTTGGGAC+AGG | 0.573381 | 6.1:+27935015 | MS.gene054161:CDS |
AGGTATACACTTATTAAATG+TGG | 0.576417 | 6.1:+27936215 | MS.gene054161:CDS |
TAGAACTCAATGATCAAGCT+GGG | 0.577189 | 6.1:+27934890 | MS.gene054161:CDS |
TTCCGAAGGCTCGTCATCGG+TGG | 0.582821 | 6.1:+27935427 | MS.gene054161:CDS |
ACAAGCTACATGACAATGAA+TGG | 0.585144 | 6.1:+27935598 | MS.gene054161:CDS |
AAAGTAAGACGATTACGACT+TGG | 0.586722 | 6.1:+27935009 | MS.gene054161:CDS |
CCCATTAGCTTCACCGACCA+AGG | 0.589497 | 6.1:-27934938 | None:intergenic |
TTGTGCTCTGTTGTCAAATG+AGG | 0.594293 | 6.1:+27935287 | MS.gene054161:CDS |
GGTGGAGGAAAGATATAAAG+AGG | 0.601606 | 6.1:+27936192 | MS.gene054161:CDS |
GATGTCATTTGGATCTGAGA+AGG | 0.602818 | 6.1:+27934543 | None:intergenic |
TTGGGTTCCTGCATATGTAA+GGG | 0.614874 | 6.1:+27935650 | MS.gene054161:CDS |
TTTATGAATTTGCTTCAACA+AGG | 0.617064 | 6.1:+27936297 | MS.gene054161:CDS |
TTTGTGTGCTTAAGCTCACA+GGG | 0.620968 | 6.1:+27936132 | MS.gene054161:CDS |
TTGGGGCTCAAATGAAGAGG+AGG | 0.629697 | 6.1:+27934866 | MS.gene054161:CDS |
ATAATCATGATCTAAGTCCA+GGG | 0.638934 | 6.1:+27934812 | MS.gene054161:CDS |
ATATTGGGGCTCAAATGAAG+AGG | 0.642532 | 6.1:+27934863 | MS.gene054161:CDS |
AATGCGTGTATGTATTCAGA+CGG | 0.642701 | 6.1:+27934757 | MS.gene054161:CDS |
ACATCTTGGTGAAGAAAACA+AGG | 0.642932 | 6.1:+27937012 | MS.gene054161:CDS |
GTGCGTTACAGATCTCAACT+TGG | 0.645749 | 6.1:+27936713 | MS.gene054161:CDS |
GGAGGAAAGATATAAAGAGG+AGG | 0.646690 | 6.1:+27936195 | MS.gene054161:CDS |
CAGGGCCCATGCATATCTAG+AGG | 0.652261 | 6.1:+27936671 | MS.gene054161:intron |
GCCATAATCACTGATCAAGA+CGG | 0.657114 | 6.1:+27935375 | MS.gene054161:CDS |
ACTTGGTTGGAATGTATGCA+TGG | 0.665132 | 6.1:+27935339 | MS.gene054161:CDS |
TTCGCCAAAATATTCATATG+CGG | 0.668609 | 6.1:-27935166 | None:intergenic |
CTGTGAGCTTAAGCACACAA+AGG | 0.692799 | 6.1:-27936130 | None:intergenic |
ATTACAGGAATTATGCTCAG+CGG | 0.724935 | 6.1:+27934578 | MS.gene054161:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAGGATTTTTTTTTTA+TGG | + | chr6.1:27936648-27936667 | MS.gene054161:intron | 10.0% |
!!! | TACATTTTAAAATAAAAGTA+TGG | - | chr6.1:27936865-27936884 | None:intergenic | 10.0% |
!! | AAATATTTACATAGAAAACA+TGG | - | chr6.1:27936915-27936934 | None:intergenic | 15.0% |
!! | ACTAAAATAAGTTCAAAAAA+AGG | + | chr6.1:27934616-27934635 | MS.gene054161:CDS | 15.0% |
!! | ATTAATATCATAACAGAATT+TGG | + | chr6.1:27937076-27937095 | MS.gene054161:intron | 15.0% |
!! | ATTGAAAGATAAAATTGAAA+AGG | + | chr6.1:27935791-27935810 | MS.gene054161:CDS | 15.0% |
!!! | ATATTTATTTGTTAAGTAAG+TGG | - | chr6.1:27935208-27935227 | None:intergenic | 15.0% |
!!! | TAGTCAATTTTATTATGTAA+TGG | + | chr6.1:27935086-27935105 | MS.gene054161:CDS | 15.0% |
!! | ATTAAGTATATATTCTTTGC+AGG | + | chr6.1:27937143-27937162 | MS.gene054161:intron | 20.0% |
!! | TTAGATCGAACAAAAATATT+GGG | + | chr6.1:27934848-27934867 | MS.gene054161:CDS | 20.0% |
!! | TTTAGATCGAACAAAAATAT+TGG | + | chr6.1:27934847-27934866 | MS.gene054161:CDS | 20.0% |
!!! | AATTTAAAGGCATTTTATGT+AGG | + | chr6.1:27936102-27936121 | MS.gene054161:CDS | 20.0% |
!!! | ATAGTTGATAAGTCTAATTT+AGG | + | chr6.1:27936633-27936652 | MS.gene054161:intron | 20.0% |
!!! | TAAATGTGGTTTTGATAATT+TGG | + | chr6.1:27936229-27936248 | MS.gene054161:CDS | 20.0% |
!!! | TTAATGTGAGTAGAAATTTT+CGG | + | chr6.1:27934914-27934933 | MS.gene054161:CDS | 20.0% |
!!! | TTCTATGTAAATATTTTAGC+AGG | + | chr6.1:27936919-27936938 | MS.gene054161:intron | 20.0% |
! | AAAAAGATTCCAGAAAAGTT+TGG | + | chr6.1:27935468-27935487 | MS.gene054161:CDS | 25.0% |
! | AAACAACCAAGTAAAAGTTT+CGG | - | chr6.1:27935316-27935335 | None:intergenic | 25.0% |
! | ACTAAAAAGAACAACCAAAA+TGG | + | chr6.1:27936548-27936567 | MS.gene054161:CDS | 25.0% |
! | AGGTATACACTTATTAAATG+TGG | + | chr6.1:27936215-27936234 | MS.gene054161:CDS | 25.0% |
! | ATATTCTAGTCAAGTAAATC+AGG | + | chr6.1:27936778-27936797 | MS.gene054161:CDS | 25.0% |
! | CAAAATGGTAAAAAAAGTCA+AGG | + | chr6.1:27936563-27936582 | MS.gene054161:CDS | 25.0% |
! | CAATACAGAAATACTTTGTT+AGG | + | chr6.1:27935049-27935068 | MS.gene054161:CDS | 25.0% |
! | CAATCTTCTTCTATAATTCT+AGG | - | chr6.1:27936404-27936423 | None:intergenic | 25.0% |
! | TAGATCGAACAAAAATATTG+GGG | + | chr6.1:27934849-27934868 | MS.gene054161:CDS | 25.0% |
! | TGTTGAAGCAAATTCATAAA+AGG | - | chr6.1:27936297-27936316 | None:intergenic | 25.0% |
! | TTAGTATGCAATGTAATATC+AGG | - | chr6.1:27936888-27936907 | None:intergenic | 25.0% |
!! | AAAGTGATTTTATGATGAAG+TGG | + | chr6.1:27935556-27935575 | MS.gene054161:CDS | 25.0% |
!! | AAGTGATTTTATGATGAAGT+GGG | + | chr6.1:27935557-27935576 | MS.gene054161:CDS | 25.0% |
!! | TTTATGAATTTGCTTCAACA+AGG | + | chr6.1:27936297-27936316 | MS.gene054161:CDS | 25.0% |
!!! | AGGATTTTTTTTTTATGGCA+GGG | + | chr6.1:27936653-27936672 | MS.gene054161:intron | 25.0% |
!!! | AGTATGAACTCATTTTTTGA+TGG | + | chr6.1:27935714-27935733 | MS.gene054161:CDS | 25.0% |
!!! | ATTTTATTATGTAATGGACG+TGG | + | chr6.1:27935092-27935111 | MS.gene054161:CDS | 25.0% |
!!! | CTTGACTTTTTTTACCATTT+TGG | - | chr6.1:27936565-27936584 | None:intergenic | 25.0% |
!!! | TAGGATTTTTTTTTTATGGC+AGG | + | chr6.1:27936652-27936671 | MS.gene054161:intron | 25.0% |
AAAGTTTCAGGAATTCCAAT+TGG | + | chr6.1:27935908-27935927 | MS.gene054161:CDS | 30.0% | |
AATCCAAATCAAGAACATCT+TGG | + | chr6.1:27936998-27937017 | MS.gene054161:CDS | 30.0% | |
AATGTATGGAGTAGTGAAAA+TGG | + | chr6.1:27936950-27936969 | MS.gene054161:CDS | 30.0% | |
AGGAAATTACTGAGTATTAC+AGG | + | chr6.1:27934563-27934582 | MS.gene054161:CDS | 30.0% | |
AGTTCAAAAAAAGGAGATGA+AGG | + | chr6.1:27934625-27934644 | MS.gene054161:CDS | 30.0% | |
ATAATCATGATCTAAGTCCA+GGG | + | chr6.1:27934812-27934831 | MS.gene054161:CDS | 30.0% | |
ATGACAATGAATGGTTGAAA+GGG | + | chr6.1:27935607-27935626 | MS.gene054161:CDS | 30.0% | |
ATTGCTTGTATTAGTCACTT+TGG | + | chr6.1:27935849-27935868 | MS.gene054161:CDS | 30.0% | |
ATTTAGTGAAAGTGATGAAC+TGG | + | chr6.1:27936336-27936355 | MS.gene054161:CDS | 30.0% | |
GATGAAAGATATTGTGTTCA+TGG | + | chr6.1:27936028-27936047 | MS.gene054161:CDS | 30.0% | |
GTTCAAAAAAAGGAGATGAA+GGG | + | chr6.1:27934626-27934645 | MS.gene054161:CDS | 30.0% | |
TGCCTTTAAATTCAAACAAG+TGG | - | chr6.1:27936094-27936113 | None:intergenic | 30.0% | |
TTCGCCAAAATATTCATATG+CGG | - | chr6.1:27935169-27935188 | None:intergenic | 30.0% | |
TTTAAATTCAAACAAGTGGC+AGG | - | chr6.1:27936090-27936109 | None:intergenic | 30.0% | |
TTTATGACCCCAGAATAATA+AGG | - | chr6.1:27937171-27937190 | None:intergenic | 30.0% | |
! | ATATGTAAGGGACACATTTT+GGG | + | chr6.1:27935662-27935681 | MS.gene054161:CDS | 30.0% |
! | CAAGGTGCAAATATAGATTT+TGG | + | chr6.1:27937030-27937049 | MS.gene054161:intron | 30.0% |
! | TCATAGAAGCTATTTCCAAT+TGG | - | chr6.1:27935926-27935945 | None:intergenic | 30.0% |
! | TCGATTACGAAATGTGTTTT+GGG | + | chr6.1:27935125-27935144 | MS.gene054161:CDS | 30.0% |
! | TGAAAGGGATATTTGTTGAA+CGG | + | chr6.1:27935622-27935641 | MS.gene054161:CDS | 30.0% |
! | TGCCACTTGTTTGAATTTAA+AGG | + | chr6.1:27936089-27936108 | MS.gene054161:CDS | 30.0% |
! | TTACTTGGTTGTTTAAGACT+TGG | + | chr6.1:27935322-27935341 | MS.gene054161:CDS | 30.0% |
!! | ATGTTCTTGATTTGGATTGA+AGG | - | chr6.1:27936996-27937015 | None:intergenic | 30.0% |
!! | TGTTCTTGATTTGGATTGAA+GGG | - | chr6.1:27936995-27937014 | None:intergenic | 30.0% |
!!! | CATCTACTTATATTTTGGCA+CGG | + | chr6.1:27936171-27936190 | MS.gene054161:CDS | 30.0% |
AAAGTAAGACGATTACGACT+TGG | + | chr6.1:27935009-27935028 | MS.gene054161:CDS | 35.0% | |
AAGTAAGACGATTACGACTT+GGG | + | chr6.1:27935010-27935029 | MS.gene054161:CDS | 35.0% | |
AATGCGTGTATGTATTCAGA+CGG | + | chr6.1:27934757-27934776 | MS.gene054161:CDS | 35.0% | |
AATTTCATACTCACCTCTTC+AGG | - | chr6.1:27936590-27936609 | None:intergenic | 35.0% | |
ACAAGCTACATGACAATGAA+TGG | + | chr6.1:27935598-27935617 | MS.gene054161:CDS | 35.0% | |
ACATCTTGGTGAAGAAAACA+AGG | + | chr6.1:27937012-27937031 | MS.gene054161:CDS | 35.0% | |
AGCAATGAAAAAGGCAATTG+AGG | + | chr6.1:27935398-27935417 | MS.gene054161:CDS | 35.0% | |
ATTACAGGAATTATGCTCAG+CGG | + | chr6.1:27934578-27934597 | MS.gene054161:CDS | 35.0% | |
CATAATCATGATCTAAGTCC+AGG | + | chr6.1:27934811-27934830 | MS.gene054161:CDS | 35.0% | |
CATGACAATGAATGGTTGAA+AGG | + | chr6.1:27935606-27935625 | MS.gene054161:CDS | 35.0% | |
CGACTTTCGTTCGTTTAATA+CGG | + | chr6.1:27935824-27935843 | MS.gene054161:CDS | 35.0% | |
CGTATTAAACGAACGAAAGT+CGG | - | chr6.1:27935826-27935845 | None:intergenic | 35.0% | |
CGTGCCAAAATATAAGTAGA+TGG | - | chr6.1:27936173-27936192 | None:intergenic | 35.0% | |
CTAGGAGATGTTTCATTACA+TGG | - | chr6.1:27936386-27936405 | None:intergenic | 35.0% | |
CTTTACCAATGCAAAGTTTC+AGG | + | chr6.1:27935896-27935915 | MS.gene054161:CDS | 35.0% | |
GAATTCCTGAAACTTTGCAT+TGG | - | chr6.1:27935904-27935923 | None:intergenic | 35.0% | |
GATCTGAACAAGTAGCATTA+TGG | - | chr6.1:27937194-27937213 | None:intergenic | 35.0% | |
TACCATTCTTGATCCTAAAC+TGG | + | chr6.1:27936442-27936461 | MS.gene054161:CDS | 35.0% | |
TAGAACTCAATGATCAAGCT+GGG | + | chr6.1:27934890-27934909 | MS.gene054161:CDS | 35.0% | |
TCACCAAGATGTTCTTGATT+TGG | - | chr6.1:27937004-27937023 | None:intergenic | 35.0% | |
TCATGCATGTTTCAACAGAT+TGG | + | chr6.1:27935953-27935972 | MS.gene054161:CDS | 35.0% | |
TGATCAGTGATTATGGCATT+TGG | - | chr6.1:27935372-27935391 | None:intergenic | 35.0% | |
TGATGGTTTACTCCAACAAA+AGG | - | chr6.1:27935246-27935265 | None:intergenic | 35.0% | |
TGTAACAAAAACGCAGTGTA+AGG | + | chr6.1:27934726-27934745 | MS.gene054161:CDS | 35.0% | |
TTAGAACTCAATGATCAAGC+TGG | + | chr6.1:27934889-27934908 | MS.gene054161:CDS | 35.0% | |
TTTGTTGGAGTAAACCATCA+TGG | + | chr6.1:27935246-27935265 | MS.gene054161:CDS | 35.0% | |
! | AGGATACCGAAACTTTTACT+TGG | + | chr6.1:27935307-27935326 | MS.gene054161:CDS | 35.0% |
! | CATATGTAAGGGACACATTT+TGG | + | chr6.1:27935661-27935680 | MS.gene054161:CDS | 35.0% |
! | CGTGCCATCTACTTATATTT+TGG | + | chr6.1:27936166-27936185 | MS.gene054161:CDS | 35.0% |
! | CTGAAACTTTGCATTGGTAA+AGG | - | chr6.1:27935898-27935917 | None:intergenic | 35.0% |
! | GTCGATTACGAAATGTGTTT+TGG | + | chr6.1:27935124-27935143 | MS.gene054161:CDS | 35.0% |
! | TGCGTTTTTGTTACAGGATT+TGG | - | chr6.1:27934721-27934740 | None:intergenic | 35.0% |
! | TTACACTGCGTTTTTGTTAC+AGG | - | chr6.1:27934727-27934746 | None:intergenic | 35.0% |
! | TTAGAAGTCTTCCTTTTCGA+AGG | - | chr6.1:27936488-27936507 | None:intergenic | 35.0% |
! | TTGGTTGTTTAAGACTTGGT+TGG | + | chr6.1:27935326-27935345 | MS.gene054161:CDS | 35.0% |
!! | TTGCATTGGTAAAGGCTTTT+TGG | - | chr6.1:27935890-27935909 | None:intergenic | 35.0% |
!!! | TGGTAAAGGCTTTTTGGAAT+TGG | - | chr6.1:27935884-27935903 | None:intergenic | 35.0% |
!!! | TGTGGTTTTGATAATTTGGC+TGG | + | chr6.1:27936233-27936252 | MS.gene054161:CDS | 35.0% |
AAAAAGTCAAGGTCCTGAAG+AGG | + | chr6.1:27936574-27936593 | MS.gene054161:CDS | 40.0% | |
AATGTGTCCCTTACATATGC+AGG | - | chr6.1:27935660-27935679 | None:intergenic | 40.0% | |
AATTGAGGTTGTCTTTCCGA+AGG | + | chr6.1:27935413-27935432 | MS.gene054161:CDS | 40.0% | |
ACTCCAACAAAAGGAGCAAA+AGG | - | chr6.1:27935237-27935256 | None:intergenic | 40.0% | |
ACTTGGTTGGAATGTATGCA+TGG | + | chr6.1:27935339-27935358 | MS.gene054161:CDS | 40.0% | |
ATATTGGGGCTCAAATGAAG+AGG | + | chr6.1:27934863-27934882 | MS.gene054161:CDS | 40.0% | |
CATGGTCAGTCAATGTTGTT+GGG | + | chr6.1:27935264-27935283 | MS.gene054161:CDS | 40.0% | |
CTAAAATATCGTGCTTTCCC+TGG | - | chr6.1:27934832-27934851 | None:intergenic | 40.0% | |
CTTGACCTCTAGATATGCAT+GGG | - | chr6.1:27936679-27936698 | None:intergenic | 40.0% | |
GCATGTTTCAACAGATTGGA+GGG | + | chr6.1:27935957-27935976 | MS.gene054161:CDS | 40.0% | |
GCCATAATCACTGATCAAGA+CGG | + | chr6.1:27935375-27935394 | MS.gene054161:CDS | 40.0% | |
GGAGGAAAGATATAAAGAGG+AGG | + | chr6.1:27936195-27936214 | MS.gene054161:CDS | 40.0% | |
GGGTATGAGAATCTCACATT+TGG | + | chr6.1:27934958-27934977 | MS.gene054161:CDS | 40.0% | |
GGTGGAGGAAAGATATAAAG+AGG | + | chr6.1:27936192-27936211 | MS.gene054161:CDS | 40.0% | |
TAGGATCAAGAATGGTAGCT+TGG | - | chr6.1:27936439-27936458 | None:intergenic | 40.0% | |
TCAAGACGGAGCAATGAAAA+AGG | + | chr6.1:27935389-27935408 | MS.gene054161:CDS | 40.0% | |
TCATGGTCAGTCAATGTTGT+TGG | + | chr6.1:27935263-27935282 | MS.gene054161:CDS | 40.0% | |
TCCGTCTTGATCAGTGATTA+TGG | - | chr6.1:27935379-27935398 | None:intergenic | 40.0% | |
TCTTGACCTCTAGATATGCA+TGG | - | chr6.1:27936680-27936699 | None:intergenic | 40.0% | |
TGCAGGCTCCTTATTATTCT+GGG | + | chr6.1:27937160-27937179 | MS.gene054161:intron | 40.0% | |
TGCATGTTTCAACAGATTGG+AGG | + | chr6.1:27935956-27935975 | MS.gene054161:CDS | 40.0% | |
TTACAGGAATTATGCTCAGC+GGG | + | chr6.1:27934579-27934598 | MS.gene054161:CDS | 40.0% | |
TTGCAGGCTCCTTATTATTC+TGG | + | chr6.1:27937159-27937178 | MS.gene054161:intron | 40.0% | |
TTGCTTCAGTGTTGTCTTTG+AGG | - | chr6.1:27935748-27935767 | None:intergenic | 40.0% | |
TTGGGTTCCTGCATATGTAA+GGG | + | chr6.1:27935650-27935669 | MS.gene054161:CDS | 40.0% | |
TTGTGCTCTGTTGTCAAATG+AGG | + | chr6.1:27935287-27935306 | MS.gene054161:CDS | 40.0% | |
TTTCAACAGATTGGAGGGTT+TGG | + | chr6.1:27935962-27935981 | MS.gene054161:CDS | 40.0% | |
TTTGTGTGCTTAAGCTCACA+GGG | + | chr6.1:27936132-27936151 | MS.gene054161:CDS | 40.0% | |
! | ACAACATTGACTGACCATGA+TGG | - | chr6.1:27935263-27935282 | None:intergenic | 40.0% |
! | AGAAATTTTCGGTCCTTGGT+CGG | + | chr6.1:27934925-27934944 | MS.gene054161:CDS | 40.0% |
! | AGCCAGTTTAGGATCAAGAA+TGG | - | chr6.1:27936447-27936466 | None:intergenic | 40.0% |
! | AGGGCCGCATATGAATATTT+TGG | + | chr6.1:27935162-27935181 | MS.gene054161:CDS | 40.0% |
! | ATGCCTTTTGCTCCTTTTGT+TGG | + | chr6.1:27935231-27935250 | MS.gene054161:CDS | 40.0% |
! | ATTTGTTGAACGGCATCGTT+GGG | + | chr6.1:27935632-27935651 | MS.gene054161:CDS | 40.0% |
! | GAGTAGAAATTTTCGGTCCT+TGG | + | chr6.1:27934921-27934940 | MS.gene054161:CDS | 40.0% |
! | GAGTGTCTACCAAACTTTTC+TGG | - | chr6.1:27935480-27935499 | None:intergenic | 40.0% |
! | TACAGATCTCAACTTGGTGA+TGG | + | chr6.1:27936719-27936738 | MS.gene054161:CDS | 40.0% |
! | TATTTGTTGAACGGCATCGT+TGG | + | chr6.1:27935631-27935650 | MS.gene054161:CDS | 40.0% |
!! | CTAAACTGGCTCGAAGTAAA+GGG | + | chr6.1:27936456-27936475 | MS.gene054161:CDS | 40.0% |
!! | TCTCAACTTGGTGATGGAAT+TGG | + | chr6.1:27936725-27936744 | MS.gene054161:CDS | 40.0% |
!!! | CTACTTATATTTTGGCACGG+TGG | + | chr6.1:27936174-27936193 | MS.gene054161:CDS | 40.0% |
AGCAGGAGCAGAACAATGTA+TGG | + | chr6.1:27936936-27936955 | MS.gene054161:intron | 45.0% | |
CCTTTACTTCGAGCCAGTTT+AGG | - | chr6.1:27936458-27936477 | None:intergenic | 45.0% | |
CTGTGAGCTTAAGCACACAA+AGG | - | chr6.1:27936133-27936152 | None:intergenic | 45.0% | |
CTTTGTGTGCTTAAGCTCAC+AGG | + | chr6.1:27936131-27936150 | MS.gene054161:CDS | 45.0% | |
GCAGGCTCCTTATTATTCTG+GGG | + | chr6.1:27937161-27937180 | MS.gene054161:intron | 45.0% | |
GTGCGTTACAGATCTCAACT+TGG | + | chr6.1:27936713-27936732 | MS.gene054161:CDS | 45.0% | |
GTTGGGTTCCTGCATATGTA+AGG | + | chr6.1:27935649-27935668 | MS.gene054161:CDS | 45.0% | |
TTGGGCAGATGCAAGATGTA+GGG | + | chr6.1:27935143-27935162 | MS.gene054161:CDS | 45.0% | |
TTTGGGCAGATGCAAGATGT+AGG | + | chr6.1:27935142-27935161 | MS.gene054161:CDS | 45.0% | |
! | GAAGTCTTCCTTTTCGAAGG+AGG | - | chr6.1:27936485-27936504 | None:intergenic | 45.0% |
!! | CCTAAACTGGCTCGAAGTAA+AGG | + | chr6.1:27936455-27936474 | MS.gene054161:CDS | 45.0% |
!!! | CTTATATTTTGGCACGGTGG+AGG | + | chr6.1:27936177-27936196 | MS.gene054161:CDS | 45.0% |
AGGAATTATGCTCAGCGGGT+AGG | + | chr6.1:27934583-27934602 | MS.gene054161:CDS | 50.0% | |
CCTTGGTCGGTGAAGCTAAT+GGG | + | chr6.1:27934938-27934957 | MS.gene054161:CDS | 50.0% | |
TCCTTGGTCGGTGAAGCTAA+TGG | + | chr6.1:27934937-27934956 | MS.gene054161:CDS | 50.0% | |
TCTTTCCGAAGGCTCGTCAT+CGG | + | chr6.1:27935424-27935443 | MS.gene054161:CDS | 50.0% | |
TTGGGGCTCAAATGAAGAGG+AGG | + | chr6.1:27934866-27934885 | MS.gene054161:CDS | 50.0% | |
! | AGACGATTACGACTTGGGAC+AGG | + | chr6.1:27935015-27935034 | MS.gene054161:CDS | 50.0% |
! | GTAAGGGACACATTTTGGGC+TGG | + | chr6.1:27935666-27935685 | MS.gene054161:CDS | 50.0% |
! | TATGCTCAGCGGGTAGGTTT+TGG | + | chr6.1:27934589-27934608 | MS.gene054161:CDS | 50.0% |
CAGGGCCCATGCATATCTAG+AGG | + | chr6.1:27936671-27936690 | MS.gene054161:intron | 55.0% | |
CTCGTCATCGGTGGTGCTTA+TGG | + | chr6.1:27935436-27935455 | MS.gene054161:CDS | 55.0% | |
! | CCCATTAGCTTCACCGACCA+AGG | - | chr6.1:27934941-27934960 | None:intergenic | 55.0% |
!! | AAGGGCGTCCTCCTTCGAAA+AGG | + | chr6.1:27936474-27936493 | MS.gene054161:CDS | 55.0% |
CACCACCGATGACGAGCCTT+CGG | - | chr6.1:27935432-27935451 | None:intergenic | 60.0% | |
TTCCGAAGGCTCGTCATCGG+TGG | + | chr6.1:27935427-27935446 | MS.gene054161:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 27934544 | 27937221 | 27934544 | ID=MS.gene054161 |
chr6.1 | mRNA | 27934544 | 27937221 | 27934544 | ID=MS.gene054161.t1;Parent=MS.gene054161 |
chr6.1 | exon | 27934544 | 27936595 | 27934544 | ID=MS.gene054161.t1.exon1;Parent=MS.gene054161.t1 |
chr6.1 | CDS | 27934544 | 27936595 | 27934544 | ID=cds.MS.gene054161.t1;Parent=MS.gene054161.t1 |
chr6.1 | exon | 27936674 | 27936799 | 27936674 | ID=MS.gene054161.t1.exon2;Parent=MS.gene054161.t1 |
chr6.1 | CDS | 27936674 | 27936799 | 27936674 | ID=cds.MS.gene054161.t1;Parent=MS.gene054161.t1 |
chr6.1 | exon | 27936941 | 27937033 | 27936941 | ID=MS.gene054161.t1.exon3;Parent=MS.gene054161.t1 |
chr6.1 | CDS | 27936941 | 27937033 | 27936941 | ID=cds.MS.gene054161.t1;Parent=MS.gene054161.t1 |
chr6.1 | exon | 27937165 | 27937221 | 27937165 | ID=MS.gene054161.t1.exon4;Parent=MS.gene054161.t1 |
chr6.1 | CDS | 27937165 | 27937221 | 27937165 | ID=cds.MS.gene054161.t1;Parent=MS.gene054161.t1 |
Gene Sequence |
Protein sequence |