Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054170.t1 | XP_024632821.1 | 51.7 | 563 | 62 | 9 | 11 | 363 | 1 | 563 | 4.50E-133 | 484.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054170.t1 | Q9SZL8 | 32.4 | 262 | 165 | 6 | 4 | 254 | 70 | 330 | 1.6e-33 | 145.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054170.t1 | A0A2Z6MJF1 | 69.5 | 275 | 76 | 2 | 1 | 267 | 758 | 1032 | 3.7e-105 | 391.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene054170.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054170.t1 | MTR_4g102720 | 54.971 | 171 | 44 | 1 | 1 | 171 | 1 | 138 | 4.62e-57 | 186 |
| MS.gene054170.t1 | MTR_5g039760 | 39.175 | 194 | 92 | 3 | 10 | 201 | 13 | 182 | 1.53e-40 | 142 |
| MS.gene054170.t1 | MTR_7g074790 | 41.618 | 173 | 82 | 2 | 3 | 174 | 6 | 160 | 4.30e-38 | 137 |
| MS.gene054170.t1 | MTR_0558s0020 | 32.231 | 242 | 143 | 4 | 9 | 229 | 38 | 279 | 4.49e-37 | 136 |
| MS.gene054170.t1 | MTR_7g061980 | 50.442 | 113 | 55 | 1 | 4 | 115 | 7 | 119 | 7.51e-33 | 120 |
| MS.gene054170.t1 | MTR_0402s0040 | 41.111 | 180 | 102 | 3 | 7 | 183 | 26 | 204 | 9.00e-33 | 129 |
| MS.gene054170.t1 | MTR_1g083640 | 30.870 | 230 | 138 | 4 | 9 | 217 | 53 | 282 | 2.33e-31 | 121 |
| MS.gene054170.t1 | MTR_6g051425 | 29.572 | 257 | 169 | 6 | 10 | 254 | 20 | 276 | 1.45e-29 | 117 |
| MS.gene054170.t1 | MTR_8g446020 | 34.118 | 170 | 110 | 1 | 62 | 229 | 70 | 239 | 2.44e-28 | 112 |
| MS.gene054170.t1 | MTR_6g090505 | 32.821 | 195 | 115 | 3 | 51 | 229 | 20 | 214 | 1.69e-27 | 112 |
| MS.gene054170.t1 | MTR_0337s0040 | 32.468 | 154 | 102 | 1 | 62 | 213 | 71 | 224 | 5.38e-22 | 94.0 |
| MS.gene054170.t1 | MTR_5g015480 | 41.985 | 131 | 72 | 3 | 7 | 134 | 56 | 185 | 1.10e-20 | 91.3 |
| MS.gene054170.t1 | MTR_2g014100 | 29.000 | 200 | 121 | 4 | 9 | 187 | 46 | 245 | 1.46e-20 | 90.5 |
| MS.gene054170.t1 | MTR_1g070355 | 26.697 | 221 | 156 | 2 | 13 | 229 | 80 | 298 | 4.86e-19 | 89.4 |
| MS.gene054170.t1 | MTR_7g113010 | 38.760 | 129 | 64 | 2 | 4 | 130 | 454 | 569 | 2.85e-17 | 84.0 |
| MS.gene054170.t1 | MTR_1g057920 | 50.633 | 79 | 38 | 1 | 7 | 84 | 34 | 112 | 4.21e-17 | 77.4 |
| MS.gene054170.t1 | MTR_6g017200 | 49.367 | 79 | 39 | 1 | 7 | 84 | 58 | 136 | 3.69e-16 | 75.9 |
| MS.gene054170.t1 | MTR_2g070590 | 43.564 | 101 | 54 | 2 | 7 | 104 | 17 | 117 | 5.08e-16 | 74.3 |
| MS.gene054170.t1 | MTR_5g076070 | 23.810 | 231 | 170 | 2 | 3 | 229 | 49 | 277 | 2.60e-15 | 76.3 |
| MS.gene054170.t1 | MTR_2g098920 | 40.000 | 105 | 59 | 4 | 7 | 109 | 80 | 182 | 2.70e-15 | 75.9 |
| MS.gene054170.t1 | MTR_4g067290 | 34.266 | 143 | 81 | 5 | 7 | 143 | 56 | 191 | 3.28e-15 | 75.1 |
| MS.gene054170.t1 | MTR_4g067290 | 37.903 | 124 | 68 | 4 | 7 | 128 | 56 | 172 | 3.83e-15 | 74.7 |
| MS.gene054170.t1 | MTR_4g067290 | 37.903 | 124 | 68 | 4 | 7 | 128 | 76 | 192 | 5.39e-15 | 74.7 |
| MS.gene054170.t1 | MTR_4g067290 | 34.266 | 143 | 81 | 5 | 7 | 143 | 76 | 211 | 5.60e-15 | 74.7 |
| MS.gene054170.t1 | MTR_4g067290 | 34.266 | 143 | 81 | 5 | 7 | 143 | 74 | 209 | 5.76e-15 | 74.7 |
| MS.gene054170.t1 | MTR_4g067290 | 37.903 | 124 | 68 | 4 | 7 | 128 | 116 | 232 | 9.41e-15 | 74.7 |
| MS.gene054170.t1 | MTR_1g055240 | 33.065 | 124 | 81 | 1 | 62 | 183 | 21 | 144 | 1.01e-14 | 71.6 |
| MS.gene054170.t1 | MTR_2g099430 | 43.678 | 87 | 48 | 1 | 30 | 115 | 26 | 112 | 4.20e-14 | 68.9 |
| MS.gene054170.t1 | MTR_0019s0290 | 31.667 | 120 | 80 | 1 | 66 | 183 | 40 | 159 | 4.22e-14 | 70.1 |
| MS.gene054170.t1 | MTR_1g008290 | 29.496 | 139 | 95 | 2 | 64 | 202 | 9 | 144 | 5.11e-13 | 66.6 |
| MS.gene054170.t1 | MTR_4g069880 | 48.387 | 62 | 32 | 0 | 4 | 65 | 7 | 68 | 5.52e-13 | 63.9 |
| MS.gene054170.t1 | MTR_4g040430 | 28.834 | 163 | 95 | 5 | 9 | 152 | 37 | 197 | 2.22e-12 | 65.9 |
| MS.gene054170.t1 | MTR_1g013060 | 25.943 | 212 | 149 | 4 | 3 | 207 | 20 | 230 | 2.74e-12 | 66.2 |
| MS.gene054170.t1 | MTR_7g446520 | 24.312 | 218 | 149 | 3 | 13 | 229 | 94 | 296 | 2.80e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054170.t1 | AT4G38180 | 32.443 | 262 | 165 | 6 | 4 | 254 | 70 | 330 | 3.14e-34 | 135 |
| MS.gene054170.t1 | AT4G15090 | 27.074 | 229 | 163 | 4 | 4 | 229 | 48 | 275 | 2.00e-23 | 103 |
| MS.gene054170.t1 | AT4G15090 | 27.074 | 229 | 163 | 4 | 4 | 229 | 48 | 275 | 2.00e-23 | 103 |
| MS.gene054170.t1 | AT4G15090 | 27.074 | 229 | 163 | 4 | 4 | 229 | 48 | 275 | 2.00e-23 | 103 |
| MS.gene054170.t1 | AT4G15090 | 27.074 | 229 | 163 | 4 | 4 | 229 | 48 | 275 | 2.00e-23 | 103 |
| MS.gene054170.t1 | AT4G15090 | 27.074 | 229 | 163 | 4 | 4 | 229 | 48 | 275 | 2.00e-23 | 103 |
| MS.gene054170.t1 | AT1G76320 | 27.888 | 251 | 162 | 7 | 11 | 252 | 1 | 241 | 2.09e-19 | 90.9 |
| MS.gene054170.t1 | AT1G76320 | 27.888 | 251 | 162 | 7 | 11 | 252 | 1 | 241 | 2.09e-19 | 90.9 |
| MS.gene054170.t1 | AT1G76320 | 27.888 | 251 | 162 | 7 | 11 | 252 | 1 | 241 | 2.40e-19 | 90.9 |
| MS.gene054170.t1 | AT1G76320 | 27.888 | 251 | 162 | 7 | 11 | 252 | 1 | 241 | 2.62e-19 | 90.5 |
| MS.gene054170.t1 | AT3G06250 | 29.114 | 237 | 122 | 8 | 7 | 238 | 190 | 385 | 1.66e-16 | 82.0 |
| MS.gene054170.t1 | AT3G06250 | 29.114 | 237 | 122 | 8 | 7 | 238 | 190 | 385 | 1.66e-16 | 82.0 |
| MS.gene054170.t1 | AT3G06250 | 29.114 | 237 | 122 | 8 | 7 | 238 | 190 | 385 | 1.66e-16 | 82.0 |
| MS.gene054170.t1 | AT3G22170 | 25.000 | 240 | 138 | 6 | 7 | 229 | 70 | 284 | 3.09e-16 | 81.3 |
| MS.gene054170.t1 | AT3G22170 | 25.000 | 240 | 138 | 6 | 7 | 229 | 70 | 284 | 3.09e-16 | 81.3 |
| MS.gene054170.t1 | AT5G18960 | 27.572 | 243 | 129 | 9 | 7 | 242 | 211 | 413 | 4.10e-15 | 77.8 |
| MS.gene054170.t1 | AT5G18960 | 27.572 | 243 | 129 | 9 | 7 | 242 | 211 | 413 | 4.10e-15 | 77.8 |
| MS.gene054170.t1 | AT3G59470 | 43.000 | 100 | 54 | 3 | 7 | 104 | 70 | 168 | 1.28e-14 | 73.6 |
| MS.gene054170.t1 | AT3G59470 | 43.000 | 100 | 54 | 3 | 7 | 104 | 70 | 168 | 1.28e-14 | 73.6 |
| MS.gene054170.t1 | AT3G59470 | 43.000 | 100 | 54 | 3 | 7 | 104 | 82 | 180 | 1.71e-14 | 73.6 |
| MS.gene054170.t1 | AT3G07500 | 42.000 | 100 | 56 | 2 | 7 | 104 | 33 | 132 | 1.84e-12 | 66.6 |
| MS.gene054170.t1 | AT2G27110 | 24.664 | 223 | 141 | 5 | 7 | 228 | 49 | 245 | 3.82e-12 | 68.6 |
| MS.gene054170.t1 | AT2G27110 | 24.664 | 223 | 141 | 5 | 7 | 228 | 49 | 245 | 3.82e-12 | 68.6 |
| MS.gene054170.t1 | AT1G10240 | 22.656 | 256 | 176 | 7 | 7 | 253 | 48 | 290 | 1.56e-11 | 66.6 |
| MS.gene054170.t1 | AT1G10240 | 22.656 | 256 | 176 | 7 | 7 | 253 | 48 | 290 | 1.56e-11 | 66.6 |
Find 86 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGAAAGGTGAATGTTTC+TGG | 0.143239 | 6.1:+28377915 | None:intergenic |
| TTGATGATGCTTGGAAGTTT+TGG | 0.231156 | 6.1:-28379102 | MS.gene054170:CDS |
| CCTTGCTTTGCAGTTGGTTC+TGG | 0.231162 | 6.1:+28378922 | None:intergenic |
| ATCAAATTACCAACATGTTC+TGG | 0.250496 | 6.1:-28378529 | MS.gene054170:CDS |
| GACAACATATGAGTTGTTTC+TGG | 0.251212 | 6.1:+28378824 | None:intergenic |
| GCAAGGATGCTCATTGATTA+TGG | 0.253058 | 6.1:-28378500 | MS.gene054170:CDS |
| CTCATTGATTATGGGTATTT+CGG | 0.259033 | 6.1:-28378491 | MS.gene054170:CDS |
| AATGCTACTTTATGTTCTTT+TGG | 0.263418 | 6.1:-28377351 | MS.gene054170:CDS |
| AAGGATAGGATTTAAGAATA+TGG | 0.268238 | 6.1:-28378903 | MS.gene054170:CDS |
| TTAAGAATATGGGTGGAGTT+TGG | 0.282368 | 6.1:-28378892 | MS.gene054170:CDS |
| CCAACACAAGTGGAACTATT+TGG | 0.315411 | 6.1:-28377486 | MS.gene054170:CDS |
| AATGTCACTTTAAGCTCATT+TGG | 0.331866 | 6.1:-28377321 | MS.gene054170:CDS |
| ACGGCTTAGCCACTTCTTGC+AGG | 0.335704 | 6.1:-28379018 | MS.gene054170:CDS |
| TATGGAGGGAGAGTTGGATT+TGG | 0.335937 | 6.1:-28379073 | MS.gene054170:CDS |
| TTGGTTCTGGTCTCTGCTCT+TGG | 0.343862 | 6.1:+28378935 | None:intergenic |
| AATCAAATGAATTCCTTTGT+TGG | 0.345771 | 6.1:+28378738 | None:intergenic |
| TCATGCCTATCAAATGGATA+TGG | 0.346715 | 6.1:-28378555 | MS.gene054170:CDS |
| AGATTTGTCCTCGCTATATC+AGG | 0.348152 | 6.1:-28377958 | MS.gene054170:CDS |
| TTATGCAGAATGATGTTAGA+AGG | 0.352354 | 6.1:-28377573 | MS.gene054170:intron |
| ATCTTCCATATCCATTTGAT+AGG | 0.361929 | 6.1:+28378550 | None:intergenic |
| TTTCTGGAGTGTGCATAATA+TGG | 0.369956 | 6.1:+28378840 | None:intergenic |
| TTCTGGCCTTCTACATCCTT+CGG | 0.374919 | 6.1:+28377932 | None:intergenic |
| ATCTCCTTGTAGCATTTCCT+TGG | 0.394339 | 6.1:+28377977 | None:intergenic |
| AGGTTTGTTTGTTGCAAAGA+AGG | 0.419137 | 6.1:-28378998 | MS.gene054170:CDS |
| TCCTATCCTTGCTTTGCAGT+TGG | 0.430816 | 6.1:+28378916 | None:intergenic |
| TGTACACAGTAGATCTTTCA+TGG | 0.432557 | 6.1:-28377455 | MS.gene054170:intron |
| ATCCAACTCATCAGCAACTT+TGG | 0.438321 | 6.1:+28377893 | None:intergenic |
| TACCAAAGTTGCTGATGAGT+TGG | 0.446669 | 6.1:-28377895 | MS.gene054170:CDS |
| CAAATAGTTCCACTTGTGTT+GGG | 0.450944 | 6.1:+28377487 | None:intergenic |
| TCAAATTACCAACATGTTCT+GGG | 0.451154 | 6.1:-28378528 | MS.gene054170:CDS |
| TTTCTATCATGCCTATCAAA+TGG | 0.458328 | 6.1:-28378561 | MS.gene054170:CDS |
| AAAAGCACAAATGGAGACTT+AGG | 0.461223 | 6.1:-28377535 | MS.gene054170:CDS |
| TCATGGCTAACATCAACAAT+AGG | 0.466270 | 6.1:+28378022 | None:intergenic |
| ATCAGCAACTTTGGTAAGAA+AGG | 0.468458 | 6.1:+28377902 | None:intergenic |
| TGATTTGATGAGCAAGGAAG+TGG | 0.472654 | 6.1:-28378720 | MS.gene054170:CDS |
| AGGATAGGATTTAAGAATAT+GGG | 0.472781 | 6.1:-28378902 | MS.gene054170:CDS |
| CCAAATAGTTCCACTTGTGT+TGG | 0.476998 | 6.1:+28377486 | None:intergenic |
| ATTTGATAGGCATGATAGAA+AGG | 0.480340 | 6.1:+28378563 | None:intergenic |
| GTTGATTATGGAGGGAGAGT+TGG | 0.484337 | 6.1:-28379079 | MS.gene054170:CDS |
| CAAGGATGCTCATTGATTAT+GGG | 0.485497 | 6.1:-28378499 | MS.gene054170:CDS |
| GGACAAAGTCAGCAAGAAGC+GGG | 0.487089 | 6.1:-28378051 | MS.gene054170:CDS |
| TGCATAATATGGTTATGTTC+TGG | 0.490959 | 6.1:+28378851 | None:intergenic |
| TGCTGATGAGTTGGATAGGC+TGG | 0.501292 | 6.1:-28377886 | MS.gene054170:CDS |
| ACCTTTGTTTGTGAAGCACT+TGG | 0.506363 | 6.1:+28377669 | None:intergenic |
| TTGATAGCTTTGATGATGCT+TGG | 0.507235 | 6.1:-28379111 | MS.gene054170:CDS |
| GGGAAAGAAGTTTGGTACTC+GGG | 0.507423 | 6.1:-28378637 | MS.gene054170:CDS |
| AGGACACCGAAGGATGTAGA+AGG | 0.508413 | 6.1:-28377938 | MS.gene054170:CDS |
| TTCTCCAAGGAAATGCTACA+AGG | 0.515443 | 6.1:-28377981 | MS.gene054170:CDS |
| TATGCAGAATGATGTTAGAA+GGG | 0.516550 | 6.1:-28377572 | MS.gene054170:intron |
| TTCATTTGATTTGATGAGCA+AGG | 0.524241 | 6.1:-28378726 | MS.gene054170:CDS |
| ACGATGTCGGTCTCCAACAA+AGG | 0.528410 | 6.1:-28378751 | MS.gene054170:CDS |
| TAATTCACAAATGCAATATG+AGG | 0.531476 | 6.1:-28377512 | MS.gene054170:CDS |
| AGTGGGAGGTAGAACCAACT+TGG | 0.541339 | 6.1:-28378702 | MS.gene054170:CDS |
| ATTCAACATCTTCCACATCA+TGG | 0.547232 | 6.1:+28378005 | None:intergenic |
| AAAGTATTGTAACAGATAGT+CGG | 0.556314 | 6.1:+28378610 | None:intergenic |
| GATACAAAATGCAAGAAGAT+CGG | 0.560009 | 6.1:-28379156 | None:intergenic |
| ATCTTGTGGTATCCTCATGT+AGG | 0.561243 | 6.1:+28377265 | None:intergenic |
| CTATGGATTCATCAATCTTG+TGG | 0.565004 | 6.1:+28377251 | None:intergenic |
| TTTGATAGGCATGATAGAAA+GGG | 0.565210 | 6.1:+28378564 | None:intergenic |
| AGGGAAAGAAGTTTGGTACT+CGG | 0.565522 | 6.1:-28378638 | MS.gene054170:CDS |
| ACATGTTCTGGGCAGATGCA+AGG | 0.571262 | 6.1:-28378517 | MS.gene054170:CDS |
| GAATATGGGTGGAGTTTGGA+CGG | 0.573195 | 6.1:-28378888 | MS.gene054170:CDS |
| ACAAACAAACCTGCAAGAAG+TGG | 0.580136 | 6.1:+28379009 | None:intergenic |
| TATGAGGTGCCCAACACAAG+TGG | 0.584247 | 6.1:-28377496 | MS.gene054170:CDS |
| ATTGATCTAGCGGACGATGT+CGG | 0.586585 | 6.1:-28378764 | MS.gene054170:CDS |
| GATTTGATGAGCAAGGAAGT+GGG | 0.590244 | 6.1:-28378719 | MS.gene054170:CDS |
| AAGGCGTATAAATCCCAAGT+TGG | 0.596512 | 6.1:+28378688 | None:intergenic |
| TATGTACACAAGAATAAAGA+CGG | 0.602767 | 6.1:-28379037 | MS.gene054170:CDS |
| TCCAAGTGCTTCACAAACAA+AGG | 0.608130 | 6.1:-28377670 | MS.gene054170:intron |
| TCGCTATATCAGGACACCGA+AGG | 0.609157 | 6.1:-28377948 | MS.gene054170:CDS |
| CCAGAACCAACTGCAAAGCA+AGG | 0.609490 | 6.1:-28378922 | MS.gene054170:CDS |
| ATAGGATTTAAGAATATGGG+TGG | 0.612678 | 6.1:-28378899 | MS.gene054170:CDS |
| TTATGGGTATTTCGGTGACG+TGG | 0.614423 | 6.1:-28378483 | MS.gene054170:intron |
| TGTTGATGTTAGCCATGATG+TGG | 0.621134 | 6.1:-28378017 | MS.gene054170:CDS |
| ACCAACTGCAAAGCAAGGAT+AGG | 0.623297 | 6.1:-28378917 | MS.gene054170:CDS |
| ATGTCAACAAATTGATCTAG+CGG | 0.626650 | 6.1:-28378774 | MS.gene054170:CDS |
| TGGACAAAGTCAGCAAGAAG+CGG | 0.632418 | 6.1:-28378052 | MS.gene054170:CDS |
| TGCATCTGCCCAGAACATGT+TGG | 0.639331 | 6.1:+28378520 | None:intergenic |
| GGAAAGAAGTTTGGTACTCG+GGG | 0.643149 | 6.1:-28378636 | MS.gene054170:CDS |
| AAGTTGCTGATGAGTTGGAT+AGG | 0.645499 | 6.1:-28377890 | MS.gene054170:CDS |
| CAATAAGCTAGTAAAACTAG+TGG | 0.648351 | 6.1:+28377296 | None:intergenic |
| TTCGGTGTCCTGATATAGCG+AGG | 0.651118 | 6.1:+28377950 | None:intergenic |
| GTGGGAGGTAGAACCAACTT+GGG | 0.659665 | 6.1:-28378701 | MS.gene054170:CDS |
| GACAAAGTCAGCAAGAAGCG+GGG | 0.678202 | 6.1:-28378050 | MS.gene054170:CDS |
| TTGATGAGCAAGGAAGTGGG+AGG | 0.684139 | 6.1:-28378716 | MS.gene054170:CDS |
| ATTGATGGGAAACCTACATG+AGG | 0.691112 | 6.1:-28377277 | MS.gene054170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAGTCTTTATTCATA+TGG | - | chr6.1:28378286-28378305 | MS.gene054170:intron | 15.0% |
| !!! | AATATTTTTAATGTTTATGC+AGG | - | chr6.1:28379020-28379039 | MS.gene054170:CDS | 15.0% |
| ! | AAGGATAGGATTTAAGAATA+TGG | - | chr6.1:28377496-28377515 | MS.gene054170:CDS | 25.0% |
| ! | AATCAAATGAATTCCTTTGT+TGG | + | chr6.1:28377664-28377683 | None:intergenic | 25.0% |
| ! | AGGATAGGATTTAAGAATAT+GGG | - | chr6.1:28377497-28377516 | MS.gene054170:CDS | 25.0% |
| ! | TAATTCACAAATGCAATATG+AGG | - | chr6.1:28378887-28378906 | MS.gene054170:CDS | 25.0% |
| ! | TATGTACACAAGAATAAAGA+CGG | - | chr6.1:28377362-28377381 | MS.gene054170:intron | 25.0% |
| !!! | AAAGTATTGTAACAGATAGT+CGG | + | chr6.1:28377792-28377811 | None:intergenic | 25.0% |
| !!! | AAGGGTTTTAAAAAGAAAGA+AGG | - | chr6.1:28378637-28378656 | MS.gene054170:CDS | 25.0% |
| !!! | AATGCTACTTTATGTTCTTT+TGG | - | chr6.1:28379048-28379067 | MS.gene054170:CDS | 25.0% |
| !!! | AGTTTTACTAGCTTATTGAT+GGG | - | chr6.1:28379108-28379127 | MS.gene054170:CDS | 25.0% |
| !!! | TAGTTTTACTAGCTTATTGA+TGG | - | chr6.1:28379107-28379126 | MS.gene054170:CDS | 25.0% |
| AAAAAGAAAGAAGGAAGAAG+AGG | - | chr6.1:28378646-28378665 | MS.gene054170:CDS | 30.0% | |
| AAAAAGAAGGGAAAGAAGTT+TGG | - | chr6.1:28377754-28377773 | MS.gene054170:intron | 30.0% | |
| AAACAAAAGAGTCATACAAG+TGG | - | chr6.1:28378053-28378072 | MS.gene054170:CDS | 30.0% | |
| AACATTATATCTTGAAGAGG+TGG | - | chr6.1:28378327-28378346 | MS.gene054170:intron | 30.0% | |
| AGAATTATCTCCGAAAAAGA+AGG | - | chr6.1:28377741-28377760 | MS.gene054170:intron | 30.0% | |
| ATAGGATTTAAGAATATGGG+TGG | - | chr6.1:28377500-28377519 | MS.gene054170:CDS | 30.0% | |
| ATCAAATTACCAACATGTTC+TGG | - | chr6.1:28377870-28377889 | MS.gene054170:CDS | 30.0% | |
| ATCGTAAAACAGTGATCTTT+GGG | - | chr6.1:28378011-28378030 | MS.gene054170:CDS | 30.0% | |
| ATCTTCCATATCCATTTGAT+AGG | + | chr6.1:28377852-28377871 | None:intergenic | 30.0% | |
| ATGTCAACAAATTGATCTAG+CGG | - | chr6.1:28377625-28377644 | MS.gene054170:intron | 30.0% | |
| ATTTGATAGGCATGATAGAA+AGG | + | chr6.1:28377839-28377858 | None:intergenic | 30.0% | |
| CAATAAGCTAGTAAAACTAG+TGG | + | chr6.1:28379106-28379125 | None:intergenic | 30.0% | |
| CTCTTCAAGATATAATGTTC+AGG | + | chr6.1:28378326-28378345 | None:intergenic | 30.0% | |
| CTGAACATTATATCTTGAAG+AGG | - | chr6.1:28378324-28378343 | MS.gene054170:intron | 30.0% | |
| CTTCGCAAAATTAAAGAGAT+CGG | - | chr6.1:28378586-28378605 | MS.gene054170:CDS | 30.0% | |
| GAATTATCTCCGAAAAAGAA+GGG | - | chr6.1:28377742-28377761 | MS.gene054170:intron | 30.0% | |
| TATGCAGAATGATGTTAGAA+GGG | - | chr6.1:28378827-28378846 | MS.gene054170:CDS | 30.0% | |
| TCAAATTACCAACATGTTCT+GGG | - | chr6.1:28377871-28377890 | MS.gene054170:CDS | 30.0% | |
| TCCAACAGAAAGAAAAAAGA+TGG | - | chr6.1:28378706-28378725 | MS.gene054170:CDS | 30.0% | |
| TGATCAGTAAAAACAGTTTG+AGG | + | chr6.1:28378118-28378137 | None:intergenic | 30.0% | |
| TGCATAATATGGTTATGTTC+TGG | + | chr6.1:28377551-28377570 | None:intergenic | 30.0% | |
| TTATGCAGAATGATGTTAGA+AGG | - | chr6.1:28378826-28378845 | MS.gene054170:CDS | 30.0% | |
| TTTCTATCATGCCTATCAAA+TGG | - | chr6.1:28377838-28377857 | MS.gene054170:intron | 30.0% | |
| TTTGATAGGCATGATAGAAA+GGG | + | chr6.1:28377838-28377857 | None:intergenic | 30.0% | |
| ! | AACTTCTTTCCCTTCTTTTT+CGG | + | chr6.1:28377754-28377773 | None:intergenic | 30.0% |
| ! | AAGATGTTGAATTTTCTCCA+AGG | - | chr6.1:28378405-28378424 | MS.gene054170:intron | 30.0% |
| ! | ACTACCAAAAAAAGCACAAA+TGG | - | chr6.1:28378855-28378874 | MS.gene054170:CDS | 30.0% |
| ! | CTCATTGATTATGGGTATTT+CGG | - | chr6.1:28377908-28377927 | MS.gene054170:CDS | 30.0% |
| ! | GGAGATAATTCTTTTGATCA+AGG | + | chr6.1:28377733-28377752 | None:intergenic | 30.0% |
| ! | GTTTTATAATCTCGTTTGTC+TGG | + | chr6.1:28377437-28377456 | None:intergenic | 30.0% |
| !! | AATGTCACTTTAAGCTCATT+TGG | - | chr6.1:28379078-28379097 | MS.gene054170:CDS | 30.0% |
| !! | TTCATTTGATTTGATGAGCA+AGG | - | chr6.1:28377673-28377692 | MS.gene054170:CDS | 30.0% |
| !!! | ACCATCTTTTTTCTTTCTGT+TGG | + | chr6.1:28378710-28378729 | None:intergenic | 30.0% |
| !!! | CAAAAACCATGCCTTTTTTT+GGG | + | chr6.1:28377271-28377290 | None:intergenic | 30.0% |
| !!! | TCAAAAACCATGCCTTTTTT+TGG | + | chr6.1:28377272-28377291 | None:intergenic | 30.0% |
| AATCCTGAAAACACAGCTAA+TGG | + | chr6.1:28377983-28378002 | None:intergenic | 35.0% | |
| ATCAGCAACTTTGGTAAGAA+AGG | + | chr6.1:28378500-28378519 | None:intergenic | 35.0% | |
| ATTCAACATCTTCCACATCA+TGG | + | chr6.1:28378397-28378416 | None:intergenic | 35.0% | |
| CAAATAGTTCCACTTGTGTT+GGG | + | chr6.1:28378915-28378934 | None:intergenic | 35.0% | |
| CATCGTAAAACAGTGATCTT+TGG | - | chr6.1:28378010-28378029 | MS.gene054170:CDS | 35.0% | |
| CATGGTAAGCTAATAGCAAT+TGG | - | chr6.1:28378962-28378981 | MS.gene054170:CDS | 35.0% | |
| CTATGGATTCATCAATCTTG+TGG | + | chr6.1:28379151-28379170 | None:intergenic | 35.0% | |
| GTAAGAAAGGTGAATGTTTC+TGG | + | chr6.1:28378487-28378506 | None:intergenic | 35.0% | |
| TACTGATCAAGATCAGTCAA+TGG | - | chr6.1:28378129-28378148 | MS.gene054170:intron | 35.0% | |
| TCATGCCTATCAAATGGATA+TGG | - | chr6.1:28377844-28377863 | MS.gene054170:intron | 35.0% | |
| TCATGGCTAACATCAACAAT+AGG | + | chr6.1:28378380-28378399 | None:intergenic | 35.0% | |
| TCGTAAAACAGTGATCTTTG+GGG | - | chr6.1:28378012-28378031 | MS.gene054170:CDS | 35.0% | |
| TGTACACAGTAGATCTTTCA+TGG | - | chr6.1:28378944-28378963 | MS.gene054170:CDS | 35.0% | |
| TTAAGAATATGGGTGGAGTT+TGG | - | chr6.1:28377507-28377526 | MS.gene054170:CDS | 35.0% | |
| ! | AAAAGCACAAATGGAGACTT+AGG | - | chr6.1:28378864-28378883 | MS.gene054170:CDS | 35.0% |
| ! | AGGTTTGTTTGTTGCAAAGA+AGG | - | chr6.1:28377401-28377420 | MS.gene054170:intron | 35.0% |
| ! | CAAAGATCACTGTTTTACGA+TGG | + | chr6.1:28378012-28378031 | None:intergenic | 35.0% |
| ! | CAAGGATGCTCATTGATTAT+GGG | - | chr6.1:28377900-28377919 | MS.gene054170:CDS | 35.0% |
| ! | GACAACATATGAGTTGTTTC+TGG | + | chr6.1:28377578-28377597 | None:intergenic | 35.0% |
| !! | TGATGATGCTTGGAAGTTTT+GGG | - | chr6.1:28377298-28377317 | MS.gene054170:CDS | 35.0% |
| !! | TTGATAGCTTTGATGATGCT+TGG | - | chr6.1:28377288-28377307 | MS.gene054170:CDS | 35.0% |
| !! | TTTCTGGAGTGTGCATAATA+TGG | + | chr6.1:28377562-28377581 | None:intergenic | 35.0% |
| !!! | AAGTTTTGGGTTGATTATGG+AGG | - | chr6.1:28377311-28377330 | MS.gene054170:CDS | 35.0% |
| !!! | AGTTTTGGGTTGATTATGGA+GGG | - | chr6.1:28377312-28377331 | MS.gene054170:CDS | 35.0% |
| !!! | GTCTCCATTTGTGCTTTTTT+TGG | + | chr6.1:28378862-28378881 | None:intergenic | 35.0% |
| !!! | TGGAAGTTTTGGGTTGATTA+TGG | - | chr6.1:28377308-28377327 | MS.gene054170:CDS | 35.0% |
| !!! | TTGATGATGCTTGGAAGTTT+TGG | - | chr6.1:28377297-28377316 | MS.gene054170:CDS | 35.0% |
| AAGGCGTATAAATCCCAAGT+TGG | + | chr6.1:28377714-28377733 | None:intergenic | 40.0% | |
| ACAAACAAACCTGCAAGAAG+TGG | + | chr6.1:28377393-28377412 | None:intergenic | 40.0% | |
| ACGTGGCATTTGATGCAAAA+TGG | - | chr6.1:28378199-28378218 | MS.gene054170:intron | 40.0% | |
| AGATTTGTCCTCGCTATATC+AGG | - | chr6.1:28378441-28378460 | MS.gene054170:intron | 40.0% | |
| AGGGAAAGAAGTTTGGTACT+CGG | - | chr6.1:28377761-28377780 | MS.gene054170:intron | 40.0% | |
| ATCCAACTCATCAGCAACTT+TGG | + | chr6.1:28378509-28378528 | None:intergenic | 40.0% | |
| ATCTCCTTGTAGCATTTCCT+TGG | + | chr6.1:28378425-28378444 | None:intergenic | 40.0% | |
| ATCTTGTGGTATCCTCATGT+AGG | + | chr6.1:28379137-28379156 | None:intergenic | 40.0% | |
| ATTGATGGGAAACCTACATG+AGG | - | chr6.1:28379122-28379141 | MS.gene054170:CDS | 40.0% | |
| CCAAATAGTTCCACTTGTGT+TGG | + | chr6.1:28378916-28378935 | None:intergenic | 40.0% | |
| CCAACACAAGTGGAACTATT+TGG | - | chr6.1:28378913-28378932 | MS.gene054170:CDS | 40.0% | |
| GAAGATCGGAACCCAAAAAA+AGG | - | chr6.1:28377257-28377276 | MS.gene054170:CDS | 40.0% | |
| GATGGTTCAACAACAGTCAA+GGG | - | chr6.1:28378619-28378638 | MS.gene054170:CDS | 40.0% | |
| GATTTGATGAGCAAGGAAGT+GGG | - | chr6.1:28377680-28377699 | MS.gene054170:CDS | 40.0% | |
| TACCAAAGTTGCTGATGAGT+TGG | - | chr6.1:28378504-28378523 | MS.gene054170:CDS | 40.0% | |
| TCCAAGTGCTTCACAAACAA+AGG | - | chr6.1:28378729-28378748 | MS.gene054170:CDS | 40.0% | |
| TGATGGTTCAACAACAGTCA+AGG | - | chr6.1:28378618-28378637 | MS.gene054170:CDS | 40.0% | |
| TGATTTGATGAGCAAGGAAG+TGG | - | chr6.1:28377679-28377698 | MS.gene054170:CDS | 40.0% | |
| TGTTGATGTTAGCCATGATG+TGG | - | chr6.1:28378382-28378401 | MS.gene054170:intron | 40.0% | |
| TTCTCCAAGGAAATGCTACA+AGG | - | chr6.1:28378418-28378437 | MS.gene054170:intron | 40.0% | |
| ! | AAGTTGCTGATGAGTTGGAT+AGG | - | chr6.1:28378509-28378528 | MS.gene054170:CDS | 40.0% |
| ! | ACCTTTGTTTGTGAAGCACT+TGG | + | chr6.1:28378733-28378752 | None:intergenic | 40.0% |
| ! | AGACCATTAGCTGTGTTTTC+AGG | - | chr6.1:28377977-28377996 | MS.gene054170:CDS | 40.0% |
| ! | AGAGGTACAAAACGTCTCAA+AGG | - | chr6.1:28378664-28378683 | MS.gene054170:CDS | 40.0% |
| ! | AGATCACTGTTTTACGATGG+TGG | + | chr6.1:28378009-28378028 | None:intergenic | 40.0% |
| ! | GCAAGGATGCTCATTGATTA+TGG | - | chr6.1:28377899-28377918 | MS.gene054170:CDS | 40.0% |
| ACCAACTGCAAAGCAAGGAT+AGG | - | chr6.1:28377482-28377501 | MS.gene054170:CDS | 45.0% | |
| GAATATGGGTGGAGTTTGGA+CGG | - | chr6.1:28377511-28377530 | MS.gene054170:CDS | 45.0% | |
| GCATCAAATGCCACGTACAT+AGG | + | chr6.1:28378195-28378214 | None:intergenic | 45.0% | |
| GGAAAGAAGTTTGGTACTCG+GGG | - | chr6.1:28377763-28377782 | MS.gene054170:intron | 45.0% | |
| GGGAAAGAAGTTTGGTACTC+GGG | - | chr6.1:28377762-28377781 | MS.gene054170:intron | 45.0% | |
| GTTATGCCTAGAGCATACCA+TGG | - | chr6.1:28378169-28378188 | MS.gene054170:intron | 45.0% | |
| GTTGATTATGGAGGGAGAGT+TGG | - | chr6.1:28377320-28377339 | MS.gene054170:CDS | 45.0% | |
| TATGGAGGGAGAGTTGGATT+TGG | - | chr6.1:28377326-28377345 | MS.gene054170:CDS | 45.0% | |
| TCCTATCCTTGCTTTGCAGT+TGG | + | chr6.1:28377486-28377505 | None:intergenic | 45.0% | |
| TCGGAACCCAAAAAAAGGCA+TGG | - | chr6.1:28377262-28377281 | MS.gene054170:CDS | 45.0% | |
| TGGACAAAGTCAGCAAGAAG+CGG | - | chr6.1:28378347-28378366 | MS.gene054170:intron | 45.0% | |
| TGTCGCAAGTTTGAGAGCTT+TGG | - | chr6.1:28378245-28378264 | MS.gene054170:intron | 45.0% | |
| TTATGGGTATTTCGGTGACG+TGG | - | chr6.1:28377916-28377935 | MS.gene054170:CDS | 45.0% | |
| ! | ATTGATCTAGCGGACGATGT+CGG | - | chr6.1:28377635-28377654 | MS.gene054170:intron | 45.0% |
| ! | GAGATCGGAAGTAGCATTGA+TGG | - | chr6.1:28378601-28378620 | MS.gene054170:CDS | 45.0% |
| ! | TTCTGGCCTTCTACATCCTT+CGG | + | chr6.1:28378470-28378489 | None:intergenic | 45.0% |
| !!! | CTCGTTTGTCTGGTTTTCGT+AGG | + | chr6.1:28377427-28377446 | None:intergenic | 45.0% |
| AATGCCACGTACATAGGCCA+TGG | + | chr6.1:28378189-28378208 | None:intergenic | 50.0% | |
| ACGATGTCGGTCTCCAACAA+AGG | - | chr6.1:28377648-28377667 | MS.gene054170:intron | 50.0% | |
| AGGACACCGAAGGATGTAGA+AGG | - | chr6.1:28378461-28378480 | MS.gene054170:intron | 50.0% | |
| AGTGGGAGGTAGAACCAACT+TGG | - | chr6.1:28377697-28377716 | MS.gene054170:intron | 50.0% | |
| CATACCATGGCCTATGTACG+TGG | - | chr6.1:28378182-28378201 | MS.gene054170:intron | 50.0% | |
| CATAGGCCATGGTATGCTCT+AGG | + | chr6.1:28378178-28378197 | None:intergenic | 50.0% | |
| CCAGAACCAACTGCAAAGCA+AGG | - | chr6.1:28377477-28377496 | MS.gene054170:CDS | 50.0% | |
| GACAAAGTCAGCAAGAAGCG+GGG | - | chr6.1:28378349-28378368 | MS.gene054170:intron | 50.0% | |
| GGACAAAGTCAGCAAGAAGC+GGG | - | chr6.1:28378348-28378367 | MS.gene054170:intron | 50.0% | |
| GTGGGAGGTAGAACCAACTT+GGG | - | chr6.1:28377698-28377717 | MS.gene054170:intron | 50.0% | |
| TCGCTATATCAGGACACCGA+AGG | - | chr6.1:28378451-28378470 | MS.gene054170:intron | 50.0% | |
| TGCATCTGCCCAGAACATGT+TGG | + | chr6.1:28377882-28377901 | None:intergenic | 50.0% | |
| TTGATGAGCAAGGAAGTGGG+AGG | - | chr6.1:28377683-28377702 | MS.gene054170:CDS | 50.0% | |
| ! | ACATGTTCTGGGCAGATGCA+AGG | - | chr6.1:28377882-28377901 | MS.gene054170:CDS | 50.0% |
| ! | CCTTGCTTTGCAGTTGGTTC+TGG | + | chr6.1:28377480-28377499 | None:intergenic | 50.0% |
| ! | TATGAGGTGCCCAACACAAG+TGG | - | chr6.1:28378903-28378922 | MS.gene054170:CDS | 50.0% |
| ! | TGCTGATGAGTTGGATAGGC+TGG | - | chr6.1:28378513-28378532 | MS.gene054170:CDS | 50.0% |
| !! | TTCGGTGTCCTGATATAGCG+AGG | + | chr6.1:28378452-28378471 | None:intergenic | 50.0% |
| !! | TTGGTTCTGGTCTCTGCTCT+TGG | + | chr6.1:28377467-28377486 | None:intergenic | 50.0% |
| ACGGCTTAGCCACTTCTTGC+AGG | - | chr6.1:28377381-28377400 | MS.gene054170:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 28377251 | 28379170 | 28377251 | ID=MS.gene054170 |
| chr6.1 | mRNA | 28377251 | 28379170 | 28377251 | ID=MS.gene054170.t1;Parent=MS.gene054170 |
| chr6.1 | exon | 28378484 | 28379170 | 28378484 | ID=MS.gene054170.t1.exon1;Parent=MS.gene054170.t1 |
| chr6.1 | CDS | 28378484 | 28379170 | 28378484 | ID=cds.MS.gene054170.t1;Parent=MS.gene054170.t1 |
| chr6.1 | exon | 28377863 | 28378077 | 28377863 | ID=MS.gene054170.t1.exon2;Parent=MS.gene054170.t1 |
| chr6.1 | CDS | 28377863 | 28378077 | 28377863 | ID=cds.MS.gene054170.t1;Parent=MS.gene054170.t1 |
| chr6.1 | exon | 28377671 | 28377707 | 28377671 | ID=MS.gene054170.t1.exon3;Parent=MS.gene054170.t1 |
| chr6.1 | CDS | 28377671 | 28377707 | 28377671 | ID=cds.MS.gene054170.t1;Parent=MS.gene054170.t1 |
| chr6.1 | exon | 28377456 | 28377587 | 28377456 | ID=MS.gene054170.t1.exon4;Parent=MS.gene054170.t1 |
| chr6.1 | CDS | 28377456 | 28377587 | 28377456 | ID=cds.MS.gene054170.t1;Parent=MS.gene054170.t1 |
| chr6.1 | exon | 28377251 | 28377379 | 28377251 | ID=MS.gene054170.t1.exon5;Parent=MS.gene054170.t1 |
| chr6.1 | CDS | 28377251 | 28377379 | 28377251 | ID=cds.MS.gene054170.t1;Parent=MS.gene054170.t1 |
| Gene Sequence |
| Protein sequence |
