AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054263

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054263.t1 MTR_6g044690 90.265 565 53 2 1 563 1 565 0.0 1023
MS.gene054263.t1 MTR_6g043960 84.294 503 59 1 61 563 1 483 0.0 867
MS.gene054263.t1 MTR_0376s0030 74.355 581 137 5 1 572 1 578 0.0 866
MS.gene054263.t1 MTR_2g054460 77.264 519 58 3 51 563 1 465 0.0 796
MS.gene054263.t1 MTR_1g035420 59.316 585 191 12 5 572 105 659 0.0 656
MS.gene054263.t1 MTR_8g070070 51.125 622 227 11 12 570 160 767 0.0 602
MS.gene054263.t1 MTR_8g070075 48.777 613 244 13 12 568 160 758 0.0 565
MS.gene054263.t1 MTR_8g071030 49.500 600 248 12 12 570 162 747 0.0 559
MS.gene054263.t1 MTR_1g035400 55.410 536 202 10 54 572 63 578 0.0 555
MS.gene054263.t1 MTR_7g088370 39.709 481 250 11 99 564 227 682 2.03e-100 320
MS.gene054263.t1 MTR_8g042750 34.622 569 318 15 19 566 127 662 5.38e-95 305
MS.gene054263.t1 MTR_4g010830 38.689 473 240 13 108 560 507 949 5.02e-90 298
MS.gene054263.t1 MTR_3g011440 34.791 526 291 14 59 563 141 635 6.27e-90 291
MS.gene054263.t1 MTR_5g013420 37.773 503 258 15 84 560 585 1058 4.04e-89 297
MS.gene054263.t1 MTR_5g013420 37.773 503 258 15 84 560 585 1058 4.06e-89 297
MS.gene054263.t1 MTR_6g061270 35.041 488 270 12 108 564 196 667 6.60e-81 268
MS.gene054263.t1 MTR_4g010550 35.892 482 232 16 97 560 11 433 2.63e-80 260
MS.gene054263.t1 MTR_7g084090 34.739 498 279 13 98 564 248 730 8.95e-80 266
MS.gene054263.t1 MTR_6g061200 34.864 479 254 16 108 564 196 638 3.46e-73 246
MS.gene054263.t1 MTR_7g084090 37.135 377 200 11 98 450 248 611 3.79e-64 222
MS.gene054263.t1 MTR_6g044000 84.071 113 18 0 61 173 1 113 5.75e-58 191
MS.gene054263.t1 MTR_6g044000 96.296 54 2 0 510 563 117 170 7.59e-31 118
MS.gene054263.t1 MTR_1g048950 32.892 453 250 11 129 560 88 507 8.03e-52 186
MS.gene054263.t1 MTR_7g445710 30.233 473 241 14 113 564 112 516 1.27e-50 183
MS.gene054263.t1 MTR_7g445530 29.449 472 238 13 113 560 112 512 7.45e-50 180
MS.gene054263.t1 MTR_7g450730 30.310 452 233 14 113 564 109 478 3.16e-46 170
MS.gene054263.t1 MTR_7g052480 29.063 320 195 13 262 564 225 529 1.62e-30 126
MS.gene054263.t1 MTR_7g445600 33.113 151 63 2 410 560 243 355 2.38e-21 96.3
MS.gene054263.t1 MTR_7g445600 34.711 121 73 3 113 232 108 223 5.72e-12 67.8
MS.gene054263.t1 MTR_5g018850 28.283 297 163 11 304 565 1207 1488 8.61e-20 94.4
MS.gene054263.t1 MTR_8g078505 29.609 179 112 3 385 563 354 518 2.87e-19 91.7
MS.gene054263.t1 MTR_1g069570 25.325 308 164 10 308 564 430 722 1.71e-18 89.7
MS.gene054263.t1 MTR_4g132610 28.934 197 109 4 378 564 852 1027 2.69e-18 89.4
MS.gene054263.t1 MTR_8g078490 28.426 197 110 4 378 564 1058 1233 7.18e-18 88.2
MS.gene054263.t1 MTR_1g080340 29.319 191 117 6 377 564 387 562 1.60e-17 86.7
MS.gene054263.t1 MTR_7g098390 28.571 175 110 5 390 562 515 676 6.24e-15 78.6
MS.gene054263.t1 MTR_1g069570 25.954 262 129 9 308 519 430 676 2.50e-14 76.6
MS.gene054263.t1 MTR_5g098680 30.000 180 97 5 122 279 244 416 1.16e-13 74.3
MS.gene054263.t1 MTR_4g131630 59.615 52 18 1 507 558 1 49 3.92e-12 61.6
MS.gene054263.t1 MTR_8g102580 30.573 157 89 4 136 279 261 410 2.20e-11 67.0
MS.gene054263.t1 MTR_7g445810 29.801 151 97 3 113 260 125 269 2.49e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054263.t1 AT4G13460 49.286 560 240 13 33 572 115 650 2.50e-175 511
MS.gene054263.t1 AT4G13460 49.286 560 240 13 33 572 115 650 2.50e-175 511
MS.gene054263.t1 AT2G33290 48.897 544 239 12 44 572 132 651 1.08e-171 502
MS.gene054263.t1 AT2G33290 48.897 544 239 12 44 572 132 651 1.08e-171 502
MS.gene054263.t1 AT2G33290 48.897 544 239 12 44 572 132 651 1.08e-171 502
MS.gene054263.t1 AT2G33290 48.897 544 239 12 44 572 132 651 1.08e-171 502
MS.gene054263.t1 AT5G04940 34.906 530 275 15 59 562 155 640 1.07e-85 280
MS.gene054263.t1 AT5G04940 34.906 530 275 15 59 562 155 640 1.07e-85 280
MS.gene054263.t1 AT2G22740 33.396 533 289 11 59 564 270 763 5.01e-84 278
MS.gene054263.t1 AT2G22740 33.396 533 289 11 59 564 270 763 5.01e-84 278
MS.gene054263.t1 AT1G73100 37.421 473 256 14 113 565 190 642 1.43e-83 274
MS.gene054263.t1 AT2G35160 33.640 544 280 15 38 564 252 731 4.07e-83 275
MS.gene054263.t1 AT2G35160 33.640 544 280 15 38 564 288 767 8.96e-83 275
MS.gene054263.t1 AT2G35160 33.640 544 280 15 38 564 288 767 8.96e-83 275
MS.gene054263.t1 AT2G35160 33.640 544 280 15 38 564 288 767 8.96e-83 275
MS.gene054263.t1 AT2G35160 33.640 544 280 15 38 564 288 767 8.96e-83 275
MS.gene054263.t1 AT5G13960 34.335 466 264 16 128 564 11 463 1.11e-74 246
MS.gene054263.t1 AT5G13960 34.082 490 272 17 108 564 126 597 1.51e-74 249
MS.gene054263.t1 AT1G17770 31.552 580 333 18 19 562 110 661 1.09e-73 248
MS.gene054263.t1 AT2G24740 36.495 485 252 18 108 570 285 735 8.58e-73 248
MS.gene054263.t1 AT5G47150 41.111 180 89 5 108 278 153 324 2.66e-31 124
MS.gene054263.t1 AT2G23740 33.508 191 102 5 378 561 1184 1356 1.25e-22 103
MS.gene054263.t1 AT2G23740 33.508 191 102 5 378 561 1184 1356 1.25e-22 103
MS.gene054263.t1 AT2G23740 33.508 191 102 5 378 561 1184 1356 1.25e-22 103
MS.gene054263.t1 AT2G23740 33.508 191 102 5 378 561 1177 1349 1.48e-22 103
MS.gene054263.t1 AT5G47160 37.017 181 96 6 105 275 236 408 2.54e-22 100
MS.gene054263.t1 AT5G47160 37.017 181 96 6 105 275 236 408 2.54e-22 100
MS.gene054263.t1 AT5G47160 37.017 181 96 6 105 275 236 408 2.54e-22 100
MS.gene054263.t1 AT3G03750 28.369 282 161 9 308 567 68 330 4.42e-20 92.4
MS.gene054263.t1 AT2G23740 35.570 149 71 5 378 519 1184 1314 3.05e-17 86.3
MS.gene054263.t1 AT2G23740 35.570 149 71 5 378 519 1184 1314 3.05e-17 86.3
MS.gene054263.t1 AT2G05900 33.333 198 115 9 149 336 1 191 4.36e-16 79.7
MS.gene054263.t1 AT1G57820 29.282 181 98 6 122 279 254 427 7.92e-13 71.6
MS.gene054263.t1 AT1G57820 29.282 181 98 6 122 279 254 427 7.92e-13 71.6
MS.gene054263.t1 AT1G57820 29.775 178 98 7 122 279 254 424 1.16e-12 71.2

Find 120 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTATGATCATGGTAAT+TGG 0.190966 6.1:-25750442 MS.gene054263:CDS
ATAAAAGTTCCAGCTAAAAT+AGG 0.203094 6.1:+25750725 None:intergenic
CTCTGAGGAAGCAAGAATTT+TGG 0.214710 6.1:+25751007 None:intergenic
GGTTCAAGGTCAACCTAAAA+TGG 0.218411 6.1:-25751209 MS.gene054263:CDS
ATTGAATGTTGGTTTGAAAA+AGG 0.222300 6.1:-25751271 MS.gene054263:CDS
GGTTGCCTCGTTCCAACTTC+TGG 0.257365 6.1:+25751413 None:intergenic
TTTATAAGTTTATGTTATCT+AGG 0.300253 6.1:-25751231 MS.gene054263:CDS
TATTCGTGTGTCAGGTTTGC+TGG 0.316438 6.1:-25751818 MS.gene054263:CDS
ACATAGGATTAGAACATAAT+TGG 0.321952 6.1:+25751146 None:intergenic
GACCTATTCAAAAGTCGATT+TGG 0.328811 6.1:+25750617 None:intergenic
AGAAACCGTGTGACACAAAA+AGG 0.338747 6.1:-25750812 MS.gene054263:CDS
CCAGTTCCTGGTGTTTGTAT+TGG 0.341157 6.1:-25751634 MS.gene054263:CDS
TGGAACGATGGCGCGCGATA+TGG 0.343186 6.1:+25752005 None:intergenic
TAAGCATACTTGCTTCCTTA+AGG 0.369544 6.1:+25751176 None:intergenic
ATGAGACTAGTTGGGGAGTT+AGG 0.370168 6.1:-25750757 MS.gene054263:CDS
TATCTTGATAAGAAAATCAT+TGG 0.372117 6.1:-25751658 MS.gene054263:CDS
AAAATCATTGGTCCAGTTCC+TGG 0.372423 6.1:-25751646 MS.gene054263:CDS
ACTAATTGAACAAACACATT+TGG 0.377806 6.1:+25750464 None:intergenic
TGCAATATGAGATTGATGTT+AGG 0.379723 6.1:-25751372 MS.gene054263:CDS
CATGCTAGTATGAGTTCTAA+TGG 0.384429 6.1:-25751535 MS.gene054263:CDS
TGTTATTCACCTCTTCTGTC+TGG 0.386390 6.1:+25751740 None:intergenic
AAATCTATGCAGAAGCTTAG+AGG 0.391940 6.1:-25751931 MS.gene054263:CDS
TGCGAAGGACAACTACAAAA+AGG 0.399229 6.1:+25750839 None:intergenic
TTTGATTCTATTCGTGTGTC+AGG 0.403272 6.1:-25751826 MS.gene054263:CDS
TAGATCTAATGAGACTAGTT+GGG 0.409391 6.1:-25750765 MS.gene054263:CDS
GAATAGGTCAACTCAAGAAT+GGG 0.409837 6.1:-25750603 MS.gene054263:CDS
GCAATATGAGATTGATGTTA+GGG 0.414210 6.1:-25751371 MS.gene054263:CDS
TAAAAGTTCCAGCTAAAATA+GGG 0.417727 6.1:+25750726 None:intergenic
CAGCAGCTATCAAGTCATTT+CGG 0.419039 6.1:+25751710 None:intergenic
TAGTTGGGGAGTTAGGTCTT+TGG 0.423498 6.1:-25750750 MS.gene054263:CDS
GAACAAACACATTTGGAGTT+GGG 0.430179 6.1:+25750471 None:intergenic
CCATCTTATGTTATTTGCAA+TGG 0.433181 6.1:-25750411 MS.gene054263:CDS
TGTATAAGATAATTGAATGT+TGG 0.433790 6.1:-25751282 MS.gene054263:CDS
GAGTGTTGTGAATGCGTTGA+TGG 0.434282 6.1:-25750953 MS.gene054263:CDS
TTAGATCTAATGAGACTAGT+TGG 0.437286 6.1:-25750766 MS.gene054263:CDS
GTCCGTATCGTGAGATGGTC+CGG 0.438189 6.1:-25751864 MS.gene054263:CDS
TGAATAGGTCAACTCAAGAA+TGG 0.440960 6.1:-25750604 MS.gene054263:CDS
AATGGGTAGTATGATCCTTA+AGG 0.441204 6.1:-25751191 MS.gene054263:CDS
GTGTTGTCATTCATGATTGA+AGG 0.442888 6.1:+25750923 None:intergenic
CAATTAGTTCTCTATGATCA+TGG 0.448311 6.1:-25750449 MS.gene054263:CDS
CCATTGCAAATAACATAAGA+TGG 0.449331 6.1:+25750411 None:intergenic
TGGTACTTCTACTACTAGTA+AGG 0.451010 6.1:-25751323 MS.gene054263:CDS
AGAATAATCGTAAGAACAAA+AGG 0.453219 6.1:-25751789 MS.gene054263:CDS
ACTAGTGTGGTTGTGTCTGA+TGG 0.461191 6.1:-25751499 MS.gene054263:CDS
CCAATACAAACACCAGGAAC+TGG 0.467377 6.1:+25751634 None:intergenic
ACTTTACCTTATAGTAAAAG+TGG 0.467478 6.1:-25750902 MS.gene054263:CDS
TGAACAAACACATTTGGAGT+TGG 0.468046 6.1:+25750470 None:intergenic
AGAAGTGAAATGTGTGTGAT+TGG 0.479419 6.1:-25751595 MS.gene054263:CDS
ATTTCTGATGATATTTCCAA+TGG 0.480319 6.1:-25751118 MS.gene054263:CDS
TCCAATGGGAAGGAGAATAT+CGG 0.490604 6.1:-25751103 MS.gene054263:CDS
TTTATGTTATCTAGGGTTCA+AGG 0.492567 6.1:-25751223 MS.gene054263:CDS
CATTGCAAATAACATAAGAT+GGG 0.496606 6.1:+25750412 None:intergenic
GTTCAAGGTCAACCTAAAAT+GGG 0.500221 6.1:-25751208 MS.gene054263:CDS
ACCGATATTCTCCTTCCCAT+TGG 0.505724 6.1:+25751102 None:intergenic
AAAAGGTATTAAATATAGGT+TGG 0.507633 6.1:-25750795 MS.gene054263:CDS
TCAAGACTAAGCTCTCTCAT+TGG 0.507939 6.1:+25750377 None:intergenic
CAAACAATATTCTCGTTGTC+CGG 0.510129 6.1:+25751845 None:intergenic
CTTGCTTCCTCAGAGCATGA+TGG 0.513053 6.1:-25750999 MS.gene054263:CDS
AGAGTTATGTTCACCATCCA+TGG 0.513297 6.1:+25750652 None:intergenic
CTCGTCGGGAACTGGAACGA+TGG 0.514539 6.1:+25751993 None:intergenic
GGAGACAAAATTATCTACTC+TGG 0.518712 6.1:-25751457 MS.gene054263:CDS
GATCATGGGGTAGAATTGAC+TGG 0.518778 6.1:-25750356 MS.gene054263:CDS
CACAACCACACTAGTAGCAA+TGG 0.520232 6.1:+25751507 None:intergenic
AGAGAGCTTAGTCTTGATCA+TGG 0.523319 6.1:-25750371 MS.gene054263:CDS
CGGAAGATACTCAAATTGCA+TGG 0.524573 6.1:+25751042 None:intergenic
CAGAAGAGGTGAATAACAGT+AGG 0.527661 6.1:-25751735 MS.gene054263:CDS
TGATGATATTTCCAATGGGA+AGG 0.528993 6.1:-25751113 MS.gene054263:CDS
ATTGATGTTAGGGTTATTCG+AGG 0.529934 6.1:-25751361 MS.gene054263:CDS
GAGAGCTTAGTCTTGATCAT+GGG 0.530152 6.1:-25750370 MS.gene054263:CDS
TTATAAGTTTATGTTATCTA+GGG 0.530619 6.1:-25751230 MS.gene054263:CDS
AGACTAAGCTCTCTCATTGG+AGG 0.531678 6.1:+25750380 None:intergenic
AATTACAACAACACTCTAGC+GGG 0.533091 6.1:-25751964 MS.gene054263:CDS
TACATGGTCAACCACAAGCT+GGG 0.533174 6.1:-25751570 MS.gene054263:CDS
ACATCCAATGCAAAATCTAA+AGG 0.535372 6.1:+25750533 None:intergenic
CTCCCTAGTCAAAACAAGCC+CGG 0.538168 6.1:+25750691 None:intergenic
ACAACCACACTAGTAGCAAT+GGG 0.544777 6.1:+25751508 None:intergenic
TGGCCATGGTGATGTGAAGC+AGG 0.545724 6.1:-25751437 MS.gene054263:CDS
AAATCTAAAGGAGGATATGC+GGG 0.546981 6.1:+25750545 None:intergenic
TCATCAGAAATGACATACAT+AGG 0.547565 6.1:+25751130 None:intergenic
TGGGCTATGACTAATATAGC+TGG 0.552213 6.1:+25750490 None:intergenic
ATGTGTGTGATTGGTTTACA+TGG 0.563933 6.1:-25751586 MS.gene054263:CDS
TTACATGGTCAACCACAAGC+TGG 0.564688 6.1:-25751571 MS.gene054263:CDS
GGAGCTTGTTCGCACTGCGA+TGG 0.569900 6.1:-25751899 MS.gene054263:CDS
TCACCGTCCGTATCGTGAGA+TGG 0.572522 6.1:-25751869 MS.gene054263:CDS
GGAACGAGGCAACCTTGCTA+TGG 0.574021 6.1:-25751404 MS.gene054263:CDS
TGTGAAGCAGGACCAGAAGT+TGG 0.574915 6.1:-25751425 MS.gene054263:CDS
TTTCTGATGATATTTCCAAT+GGG 0.579478 6.1:-25751117 MS.gene054263:CDS
GTCCGGACCATCTCACGATA+CGG 0.581256 6.1:+25751862 None:intergenic
AGATCTAATGAGACTAGTTG+GGG 0.582316 6.1:-25750764 MS.gene054263:CDS
AGGTCATTAATTTATGAATG+TGG 0.583798 6.1:-25750863 MS.gene054263:CDS
TTTGTTGAACCAGACAGAAG+AGG 0.584072 6.1:-25751749 MS.gene054263:CDS
GACTAAGCTCTCTCATTGGA+GGG 0.593113 6.1:+25750381 None:intergenic
CCTTCCCATTGCTACTAGTG+TGG 0.594545 6.1:-25751512 MS.gene054263:CDS
GGATACAATGATGATGATCA+AGG 0.600833 6.1:-25751478 MS.gene054263:CDS
GGAAGATACTCAAATTGCAT+GGG 0.603623 6.1:+25751043 None:intergenic
GCATACTTGTCACCATAGCA+AGG 0.603748 6.1:+25751392 None:intergenic
ACGATGGCGCGCGATATGGA+AGG 0.611075 6.1:+25752009 None:intergenic
GCTGCTTTGATGAATGATCA+TGG 0.613817 6.1:-25751691 MS.gene054263:CDS
GCAATTTGAGTATCTTCCGA+AGG 0.614305 6.1:-25751038 MS.gene054263:CDS
AAAATCTAAAGGAGGATATG+CGG 0.621572 6.1:+25750544 None:intergenic
AAAATTATCTACTCTGGCCA+TGG 0.625235 6.1:-25751451 MS.gene054263:CDS
AGAAGAGGTGAATAACAGTA+GGG 0.627302 6.1:-25751734 MS.gene054263:CDS
TTCCTCAGAGCATGATGGAG+AGG 0.627575 6.1:-25750994 MS.gene054263:CDS
TCCAATGCAAAATCTAAAGG+AGG 0.629567 6.1:+25750536 None:intergenic
GAAGCTTAGAGGTCAGAACA+AGG 0.631207 6.1:-25751920 MS.gene054263:CDS
ATTGCAAATAACATAAGATG+GGG 0.634153 6.1:+25750413 None:intergenic
ACACGGTTTCTGCAATGCGA+AGG 0.638201 6.1:+25750824 None:intergenic
AGAGCTTAGTCTTGATCATG+GGG 0.638779 6.1:-25750369 MS.gene054263:CDS
GAAGCAAGTATGCTTAAGAG+AGG 0.642544 6.1:-25751169 MS.gene054263:CDS
CATTGGATGTATCAACGATG+AGG 0.644772 6.1:-25750520 MS.gene054263:CDS
AAATAATCAATCCCAGCTTG+TGG 0.645273 6.1:+25751559 None:intergenic
CCACACTAGTAGCAATGGGA+AGG 0.645358 6.1:+25751512 None:intergenic
TTCCTCTCCATCATGCTCTG+AGG 0.646004 6.1:+25750992 None:intergenic
CGATGGCGCGCGATATGGAA+GGG 0.646458 6.1:+25752010 None:intergenic
GGTCCTGCTTCACATCACCA+TGG 0.648806 6.1:+25751434 None:intergenic
AATAGGTCAACTCAAGAATG+GGG 0.659182 6.1:-25750602 MS.gene054263:CDS
AAATTACAACAACACTCTAG+CGG 0.670198 6.1:-25751965 MS.gene054263:CDS
ATATCACCAATACAAACACC+AGG 0.674752 6.1:+25751628 None:intergenic
CAGGACCAGAAGTTGGAACG+AGG 0.677973 6.1:-25751418 MS.gene054263:CDS
GGACCATCTCACGATACGGA+CGG 0.707709 6.1:+25751866 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGTTTATGTTATCTA+GGG - chr6.1:25751134-25751153 MS.gene054263:CDS 15.0%
!! TTTATAAGTTTATGTTATCT+AGG - chr6.1:25751133-25751152 MS.gene054263:CDS 15.0%
!! TATCTTGATAAGAAAATCAT+TGG - chr6.1:25750706-25750725 MS.gene054263:CDS 20.0%
!! TGTATAAGATAATTGAATGT+TGG - chr6.1:25751082-25751101 MS.gene054263:CDS 20.0%
!!! AAAAGGTATTAAATATAGGT+TGG - chr6.1:25751569-25751588 MS.gene054263:CDS 20.0%
!!! AAAAGTGGATTTCTTTTAAA+AGG - chr6.1:25751477-25751496 MS.gene054263:CDS 20.0%
!!! AAAGTGGATTTCTTTTAAAA+GGG - chr6.1:25751478-25751497 MS.gene054263:CDS 20.0%
!!! CACAAAAAGGTATTAAATAT+AGG - chr6.1:25751565-25751584 MS.gene054263:CDS 20.0%
! ACATAGGATTAGAACATAAT+TGG + chr6.1:25751221-25751240 None:intergenic 25.0%
! ACTAATTGAACAAACACATT+TGG + chr6.1:25751903-25751922 None:intergenic 25.0%
! ACTTTACCTTATAGTAAAAG+TGG - chr6.1:25751462-25751481 MS.gene054263:CDS 25.0%
! AGAATAATCGTAAGAACAAA+AGG - chr6.1:25750575-25750594 MS.gene054263:CDS 25.0%
! AGGTCATTAATTTATGAATG+TGG - chr6.1:25751501-25751520 MS.gene054263:CDS 25.0%
! ATAAAAGTTCCAGCTAAAAT+AGG + chr6.1:25751642-25751661 None:intergenic 25.0%
! ATTGCAAATAACATAAGATG+GGG + chr6.1:25751954-25751973 None:intergenic 25.0%
! ATTTCTGATGATATTTCCAA+TGG - chr6.1:25751246-25751265 MS.gene054263:CDS 25.0%
! CATTGCAAATAACATAAGAT+GGG + chr6.1:25751955-25751974 None:intergenic 25.0%
! TAAAAGTTCCAGCTAAAATA+GGG + chr6.1:25751641-25751660 None:intergenic 25.0%
! TTTCTGATGATATTTCCAAT+GGG - chr6.1:25751247-25751266 MS.gene054263:CDS 25.0%
!!! AGAAATCCACTTTTACTATA+AGG + chr6.1:25751471-25751490 None:intergenic 25.0%
!!! AGTAAGGTTTTTGTTTATGA+TGG - chr6.1:25751057-25751076 MS.gene054263:CDS 25.0%
!!! ATTGAATGTTGGTTTGAAAA+AGG - chr6.1:25751093-25751112 MS.gene054263:CDS 25.0%
AAAATCTAAAGGAGGATATG+CGG + chr6.1:25751823-25751842 None:intergenic 30.0%
AAATTACAACAACACTCTAG+CGG - chr6.1:25750399-25750418 MS.gene054263:CDS 30.0%
ACATCCAATGCAAAATCTAA+AGG + chr6.1:25751834-25751853 None:intergenic 30.0%
CCATTGCAAATAACATAAGA+TGG + chr6.1:25751956-25751975 None:intergenic 30.0%
GCAATATGAGATTGATGTTA+GGG - chr6.1:25750993-25751012 MS.gene054263:CDS 30.0%
TCATCAGAAATGACATACAT+AGG + chr6.1:25751237-25751256 None:intergenic 30.0%
TGCAATATGAGATTGATGTT+AGG - chr6.1:25750992-25751011 MS.gene054263:CDS 30.0%
TTAGATCTAATGAGACTAGT+TGG - chr6.1:25751598-25751617 MS.gene054263:CDS 30.0%
TTCTCTATGATCATGGTAAT+TGG - chr6.1:25751922-25751941 MS.gene054263:CDS 30.0%
! ACTTTTATATGTGAGTTCAC+CGG - chr6.1:25751654-25751673 MS.gene054263:CDS 30.0%
! CAATTAGTTCTCTATGATCA+TGG - chr6.1:25751915-25751934 MS.gene054263:CDS 30.0%
! CCATCTTATGTTATTTGCAA+TGG - chr6.1:25751953-25751972 MS.gene054263:CDS 30.0%
! GGTTTGAAAAAGGTATATCT+GGG - chr6.1:25751103-25751122 MS.gene054263:CDS 30.0%
! GTTGTAATTTTGTAACTCGT+CGG + chr6.1:25750389-25750408 None:intergenic 30.0%
! TAATACCTTTTTGTGTCACA+CGG + chr6.1:25751560-25751579 None:intergenic 30.0%
! TAGATCTAATGAGACTAGTT+GGG - chr6.1:25751599-25751618 MS.gene054263:CDS 30.0%
! TGGTTTGAAAAAGGTATATC+TGG - chr6.1:25751102-25751121 MS.gene054263:CDS 30.0%
! TTGTAATTTTGTAACTCGTC+GGG + chr6.1:25750388-25750407 None:intergenic 30.0%
! TTTATGTTATCTAGGGTTCA+AGG - chr6.1:25751141-25751160 MS.gene054263:CDS 30.0%
!! ATCCAAATCGACTTTTGAAT+AGG - chr6.1:25751745-25751764 MS.gene054263:CDS 30.0%
AAAATTATCTACTCTGGCCA+TGG - chr6.1:25750913-25750932 MS.gene054263:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG + chr6.1:25750808-25750827 None:intergenic 35.0%
AAATCTAAAGGAGGATATGC+GGG + chr6.1:25751822-25751841 None:intergenic 35.0%
AAATCTATGCAGAAGCTTAG+AGG - chr6.1:25750433-25750452 MS.gene054263:CDS 35.0%
AATAGGTCAACTCAAGAATG+GGG - chr6.1:25751762-25751781 MS.gene054263:CDS 35.0%
AATGGGTAGTATGATCCTTA+AGG - chr6.1:25751173-25751192 MS.gene054263:CDS 35.0%
AATTACAACAACACTCTAGC+GGG - chr6.1:25750400-25750419 MS.gene054263:CDS 35.0%
AGAAGAGGTGAATAACAGTA+GGG - chr6.1:25750630-25750649 MS.gene054263:CDS 35.0%
AGAAGTGAAATGTGTGTGAT+TGG - chr6.1:25750769-25750788 MS.gene054263:CDS 35.0%
ATATCACCAATACAAACACC+AGG + chr6.1:25750739-25750758 None:intergenic 35.0%
ATTGATGTTAGGGTTATTCG+AGG - chr6.1:25751003-25751022 MS.gene054263:CDS 35.0%
CAAACAATATTCTCGTTGTC+CGG + chr6.1:25750522-25750541 None:intergenic 35.0%
GAATAGGTCAACTCAAGAAT+GGG - chr6.1:25751761-25751780 MS.gene054263:CDS 35.0%
GACCTATTCAAAAGTCGATT+TGG + chr6.1:25751750-25751769 None:intergenic 35.0%
GATGGAGAGGAAAAATAAGA+GGG - chr6.1:25751383-25751402 MS.gene054263:CDS 35.0%
GGAAGATACTCAAATTGCAT+GGG + chr6.1:25751324-25751343 None:intergenic 35.0%
GGAGACAAAATTATCTACTC+TGG - chr6.1:25750907-25750926 MS.gene054263:CDS 35.0%
GTGTTGTCATTCATGATTGA+AGG + chr6.1:25751444-25751463 None:intergenic 35.0%
GTTCAAGGTCAACCTAAAAT+GGG - chr6.1:25751156-25751175 MS.gene054263:CDS 35.0%
TAAGCATACTTGCTTCCTTA+AGG + chr6.1:25751191-25751210 None:intergenic 35.0%
TCCAATGCAAAATCTAAAGG+AGG + chr6.1:25751831-25751850 None:intergenic 35.0%
TGAATAGGTCAACTCAAGAA+TGG - chr6.1:25751760-25751779 MS.gene054263:CDS 35.0%
TGATGATATTTCCAATGGGA+AGG - chr6.1:25751251-25751270 MS.gene054263:CDS 35.0%
TGATGGAGAGGAAAAATAAG+AGG - chr6.1:25751382-25751401 MS.gene054263:CDS 35.0%
TGGTACTTCTACTACTAGTA+AGG - chr6.1:25751041-25751060 MS.gene054263:CDS 35.0%
TTTGATTCTATTCGTGTGTC+AGG - chr6.1:25750538-25750557 MS.gene054263:CDS 35.0%
! AGATCTAATGAGACTAGTTG+GGG - chr6.1:25751600-25751619 MS.gene054263:CDS 35.0%
! AGGATCATACTACCCATTTT+AGG + chr6.1:25751171-25751190 None:intergenic 35.0%
! CATGCTAGTATGAGTTCTAA+TGG - chr6.1:25750829-25750848 MS.gene054263:CDS 35.0%
! CTTTTATATGTGAGTTCACC+GGG - chr6.1:25751655-25751674 MS.gene054263:CDS 35.0%
! GAAAAAGGTATATCTGGGTT+TGG - chr6.1:25751108-25751127 MS.gene054263:CDS 35.0%
! GAACAAACACATTTGGAGTT+GGG + chr6.1:25751896-25751915 None:intergenic 35.0%
! GGATACAATGATGATGATCA+AGG - chr6.1:25750886-25750905 MS.gene054263:CDS 35.0%
! TCCTCCTTTAGATTTTGCAT+TGG - chr6.1:25751827-25751846 MS.gene054263:CDS 35.0%
! TGAACAAACACATTTGGAGT+TGG + chr6.1:25751897-25751916 None:intergenic 35.0%
! TTAGGGTTATTCGAGGTTTT+CGG - chr6.1:25751010-25751029 MS.gene054263:CDS 35.0%
!! AATTTTGGAAAAGCTGCCTT+CGG + chr6.1:25751345-25751364 None:intergenic 35.0%
!! ATGTGTGTGATTGGTTTACA+TGG - chr6.1:25750778-25750797 MS.gene054263:CDS 35.0%
!! GTGGATTTCTTTTAAAAGGG+AGG - chr6.1:25751481-25751500 MS.gene054263:CDS 35.0%
AAAATCATTGGTCCAGTTCC+TGG - chr6.1:25750718-25750737 MS.gene054263:CDS 40.0%
ACAACCACACTAGTAGCAAT+GGG + chr6.1:25750859-25750878 None:intergenic 40.0%
AGAAACCGTGTGACACAAAA+AGG - chr6.1:25751552-25751571 MS.gene054263:CDS 40.0%
AGAGTTATGTTCACCATCCA+TGG + chr6.1:25751715-25751734 None:intergenic 40.0%
CAGAAGAGGTGAATAACAGT+AGG - chr6.1:25750629-25750648 MS.gene054263:CDS 40.0%
CAGCAGCTATCAAGTCATTT+CGG + chr6.1:25750657-25750676 None:intergenic 40.0%
CATTGGATGTATCAACGATG+AGG - chr6.1:25751844-25751863 MS.gene054263:CDS 40.0%
CGGAAGATACTCAAATTGCA+TGG + chr6.1:25751325-25751344 None:intergenic 40.0%
GAAGCAAGTATGCTTAAGAG+AGG - chr6.1:25751195-25751214 MS.gene054263:CDS 40.0%
GCAATTTGAGTATCTTCCGA+AGG - chr6.1:25751326-25751345 MS.gene054263:CDS 40.0%
GGTTCAAGGTCAACCTAAAA+TGG - chr6.1:25751155-25751174 MS.gene054263:CDS 40.0%
TCAAGACTAAGCTCTCTCAT+TGG + chr6.1:25751990-25752009 None:intergenic 40.0%
TCCAATGGGAAGGAGAATAT+CGG - chr6.1:25751261-25751280 MS.gene054263:CDS 40.0%
TGCGAAGGACAACTACAAAA+AGG + chr6.1:25751528-25751547 None:intergenic 40.0%
TGGGCTATGACTAATATAGC+TGG + chr6.1:25751877-25751896 None:intergenic 40.0%
TGTTATTCACCTCTTCTGTC+TGG + chr6.1:25750627-25750646 None:intergenic 40.0%
TTTGTTGAACCAGACAGAAG+AGG - chr6.1:25750615-25750634 MS.gene054263:CDS 40.0%
! ATTCGAGGTTTTCGGTATGA+AGG - chr6.1:25751018-25751037 MS.gene054263:CDS 40.0%
! GAGGAAAAATAAGAGGGTGT+TGG - chr6.1:25751389-25751408 MS.gene054263:CDS 40.0%
! GCTGCTTTGATGAATGATCA+TGG - chr6.1:25750673-25750692 MS.gene054263:CDS 40.0%
!! AGAGAGCTTAGTCTTGATCA+TGG - chr6.1:25751993-25752012 MS.gene054263:CDS 40.0%
!! AGAGCTTAGTCTTGATCATG+GGG - chr6.1:25751995-25752014 MS.gene054263:CDS 40.0%
!! CTCTGAGGAAGCAAGAATTT+TGG + chr6.1:25751360-25751379 None:intergenic 40.0%
!! GAGAGCTTAGTCTTGATCAT+GGG - chr6.1:25751994-25752013 MS.gene054263:CDS 40.0%
!! GCAAGCGGAAATTTTAACCA+TGG - chr6.1:25751695-25751714 MS.gene054263:CDS 40.0%
!! GCGGAAATTTTAACCATGGA+TGG - chr6.1:25751699-25751718 MS.gene054263:CDS 40.0%
!!! TCTTTGGACCCTATTTTAGC+TGG - chr6.1:25751630-25751649 MS.gene054263:CDS 40.0%
ACCGATATTCTCCTTCCCAT+TGG + chr6.1:25751265-25751284 None:intergenic 45.0%
ACTAGTGTGGTTGTGTCTGA+TGG - chr6.1:25750865-25750884 MS.gene054263:CDS 45.0%
AGACTAAGCTCTCTCATTGG+AGG + chr6.1:25751987-25752006 None:intergenic 45.0%
CACAACCACACTAGTAGCAA+TGG + chr6.1:25750860-25750879 None:intergenic 45.0%
CCAATACAAACACCAGGAAC+TGG + chr6.1:25750733-25750752 None:intergenic 45.0%
CCAGTTCCTGGTGTTTGTAT+TGG - chr6.1:25750730-25750749 MS.gene054263:CDS 45.0%
GAAGCTTAGAGGTCAGAACA+AGG - chr6.1:25750444-25750463 MS.gene054263:CDS 45.0%
GACTAAGCTCTCTCATTGGA+GGG + chr6.1:25751986-25752005 None:intergenic 45.0%
GATCATGGGGTAGAATTGAC+TGG - chr6.1:25752008-25752027 MS.gene054263:CDS 45.0%
GCATACTTGTCACCATAGCA+AGG + chr6.1:25750975-25750994 None:intergenic 45.0%
TACATGGTCAACCACAAGCT+GGG - chr6.1:25750794-25750813 MS.gene054263:CDS 45.0%
TAGTTGGGGAGTTAGGTCTT+TGG - chr6.1:25751614-25751633 MS.gene054263:CDS 45.0%
TATTCGTGTGTCAGGTTTGC+TGG - chr6.1:25750546-25750565 MS.gene054263:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG - chr6.1:25750793-25750812 MS.gene054263:CDS 45.0%
! ATGAGACTAGTTGGGGAGTT+AGG - chr6.1:25751607-25751626 MS.gene054263:CDS 45.0%
! GAGTGTTGTGAATGCGTTGA+TGG - chr6.1:25751411-25751430 MS.gene054263:CDS 45.0%
! TTTTGTAACTCGTCGGGAAC+TGG + chr6.1:25750382-25750401 None:intergenic 45.0%
!!! TGTTTTGACTAGGGAGCAAG+CGG - chr6.1:25751680-25751699 MS.gene054263:CDS 45.0%
ACACGGTTTCTGCAATGCGA+AGG + chr6.1:25751543-25751562 None:intergenic 50.0%
CCACACTAGTAGCAATGGGA+AGG + chr6.1:25750855-25750874 None:intergenic 50.0%
CCTTCCCATTGCTACTAGTG+TGG - chr6.1:25750852-25750871 MS.gene054263:CDS 50.0%
CTCCCTAGTCAAAACAAGCC+CGG + chr6.1:25751676-25751695 None:intergenic 50.0%
CTTGCTTCCTCAGAGCATGA+TGG - chr6.1:25751365-25751384 MS.gene054263:CDS 50.0%
TGTGAAGCAGGACCAGAAGT+TGG - chr6.1:25750939-25750958 MS.gene054263:CDS 50.0%
TTCCTCTCCATCATGCTCTG+AGG + chr6.1:25751375-25751394 None:intergenic 50.0%
! CGAGGTTTTCGGTATGAAGG+TGG - chr6.1:25751021-25751040 MS.gene054263:CDS 50.0%
! TTCCTCAGAGCATGATGGAG+AGG - chr6.1:25751370-25751389 MS.gene054263:CDS 50.0%
!!! CACCGGGCTTGTTTTGACTA+GGG - chr6.1:25751671-25751690 MS.gene054263:CDS 50.0%
!!! TCACCGGGCTTGTTTTGACT+AGG - chr6.1:25751670-25751689 MS.gene054263:CDS 50.0%
CAGGACCAGAAGTTGGAACG+AGG - chr6.1:25750946-25750965 MS.gene054263:CDS 55.0%
GGAACGAGGCAACCTTGCTA+TGG - chr6.1:25750960-25750979 MS.gene054263:CDS 55.0%
GGACCATCTCACGATACGGA+CGG + chr6.1:25750501-25750520 None:intergenic 55.0%
GGTCCTGCTTCACATCACCA+TGG + chr6.1:25750933-25750952 None:intergenic 55.0%
GGTTGCCTCGTTCCAACTTC+TGG + chr6.1:25750954-25750973 None:intergenic 55.0%
GTCCGGACCATCTCACGATA+CGG + chr6.1:25750505-25750524 None:intergenic 55.0%
GTCCGTATCGTGAGATGGTC+CGG - chr6.1:25750500-25750519 MS.gene054263:CDS 55.0%
TCACCGTCCGTATCGTGAGA+TGG - chr6.1:25750495-25750514 MS.gene054263:CDS 55.0%
! TGGCCATGGTGATGTGAAGC+AGG - chr6.1:25750927-25750946 MS.gene054263:CDS 55.0%
ACGATGGCGCGCGATATGGA+AGG + chr6.1:25750358-25750377 None:intergenic 60.0%
CGATGGCGCGCGATATGGAA+GGG + chr6.1:25750357-25750376 None:intergenic 60.0%
CTCGTCGGGAACTGGAACGA+TGG + chr6.1:25750374-25750393 None:intergenic 60.0%
TGGAACGATGGCGCGCGATA+TGG + chr6.1:25750362-25750381 None:intergenic 60.0%
! GGAGCTTGTTCGCACTGCGA+TGG - chr6.1:25750465-25750484 MS.gene054263:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 25750334 25752052 25750334 ID=MS.gene054263
chr6.1 mRNA 25750334 25752052 25750334 ID=MS.gene054263.t1;Parent=MS.gene054263
chr6.1 exon 25750334 25752052 25750334 ID=MS.gene054263.t1.exon1;Parent=MS.gene054263.t1
chr6.1 CDS 25750334 25752052 25750334 ID=cds.MS.gene054263.t1;Parent=MS.gene054263.t1
Gene Sequence

>MS.gene054263

ATGTATTTTCAAAATTCAAACCCTTCCATATCGCGCGCCATCGTTCCAGTTCCCGACGAGTTACAAAATTACAACAACACTCTAGCGGGAAAAGCTTCAAAATCTATGCAGAAGCTTAGAGGTCAGAACAAGGAGCTTGTTCGCACTGCGATGGATGCAGATCACCGTCCGTATCGTGAGATGGTCCGGACAACGAGAATATTGTTTGATTCTATTCGTGTGTCAGGTTTGCTGGAAGAAGAGAATAATCGTAAGAACAAAAGGTATTTGAAAGCTTATTCTTTGTTGAACCAGACAGAAGAGGTGAATAACAGTAGGGTCCGAAATGACTTGATAGCTGCTGCTTTGATGAATGATCATGGTATGTATTTGTATCTTGATAAGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGTGATATTTTTCTCTATAGAAGTGAAATGTGTGTGATTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCCTTCCCATTGCTACTAGTGTGGTTGTGTCTGATGGATACAATGATGATGATCAAGGAGACAAAATTATCTACTCTGGCCATGGTGATGTGAAGCAGGACCAGAAGTTGGAACGAGGCAACCTTGCTATGGTGACAAGTATGCAATATGAGATTGATGTTAGGGTTATTCGAGGTTTTCGGTATGAAGGTGGTACTTCTACTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAATTGAATGTTGGTTTGAAAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTATGTTATCTAGGGTTCAAGGTCAACCTAAAATGGGTAGTATGATCCTTAAGGAAGCAAGTATGCTTAAGAGAGGCCAATTATGTTCTAATCCTATGTATGTCATTTCTGATGATATTTCCAATGGGAAGGAGAATATCGGTGTGAGACTATATAATGACATTGATAGTGATCGCTATCCCATGCAATTTGAGTATCTTCCGAAGGCAGCTTTTCCAAAATTCTTGCTTCCTCAGAGCATGATGGAGAGGAAAAATAAGAGGGTGTTGGAGTGTTGTGAATGCGTTGATGGATGTTTTCCTTCAATCATGAATGACAACACTTTACCTTATAGTAAAAGTGGATTTCTTTTAAAAGGGAGGTCATTAATTTATGAATGTGGTCCTTTTTGTAGTTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATATAGGTTGGAAGTGTTTAGATCTAATGAGACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTTTAGCTGGAACTTTTATATGTGAGTTCACCGGGCTTGTTTTGACTAGGGAGCAAGCGGAAATTTTAACCATGGATGGTGAACATAACTCTTCGATGATATATCCAAATCGACTTTTGAATAGGTCAACTCAAGAATGGGGTGATTTGTCGATGATAGATGCTAATCATGTGCATCCCGCATATCCTCCTTTAGATTTTGCATTGGATGTATCAACGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTATGATCATGGTAATTGGATGTTTCCCCATCTTATGTTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGGGTAGAATTGACTGGAAAGCTCTCGATACGTAATTGA
Protein sequence

>MS.gene054263.t1

MYFQNSNPSISRAIVPVPDELQNYNNTLAGKASKSMQKLRGQNKELVRTAMDADHRPYREMVRTTRILFDSIRVSGLLEEENNRKNKRYLKAYSLLNQTEEVNNSRVRNDLIAAALMNDHGMYLYLDKKIIGPVPGVCIGDIFLYRSEMCVIGLHGQPQAGIDYLHASMSSNGLPIATSVVVSDGYNDDDQGDKIIYSGHGDVKQDQKLERGNLAMVTSMQYEIDVRVIRGFRYEGGTSTTSKVFVYDGLYKIIECWFEKGISGFGVYKFMLSRVQGQPKMGSMILKEASMLKRGQLCSNPMYVISDDISNGKENIGVRLYNDIDSDRYPMQFEYLPKAAFPKFLLPQSMMERKNKRVLECCECVDGCFPSIMNDNTLPYSKSGFLLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEHNSSMIYPNRLLNRSTQEWGDLSMIDANHVHPAYPPLDFALDVSTMRNVASYISHSPTPNVFVQLVLYDHGNWMFPHLMLFAMENIPPMRELSLDHGVELTGKLSIRN