Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054275.t1 | KEH26068.1 | 82 | 233 | 39 | 1 | 1 | 233 | 1 | 230 | 5.90E-101 | 377.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054275.t1 | Q8S9H7 | 53.2 | 47 | 22 | 0 | 107 | 153 | 132 | 178 | 7.8e-09 | 62.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054275.t1 | A0A072UAF3 | 82.0 | 233 | 39 | 1 | 1 | 233 | 1 | 230 | 4.3e-101 | 377.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene054275.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054275.t1 | MTR_6g043490 | 84.549 | 233 | 33 | 1 | 1 | 233 | 1 | 230 | 1.32e-123 | 350 |
MS.gene054275.t1 | MTR_6g043480 | 83.691 | 233 | 35 | 1 | 1 | 233 | 1 | 230 | 1.50e-123 | 350 |
MS.gene054275.t1 | MTR_8g072990 | 64.659 | 249 | 63 | 5 | 1 | 232 | 1 | 241 | 3.09e-94 | 276 |
MS.gene054275.t1 | MTR_8g073050 | 54.894 | 235 | 93 | 8 | 1 | 233 | 1 | 224 | 4.89e-59 | 186 |
MS.gene054275.t1 | MTR_5g027570 | 39.241 | 79 | 45 | 1 | 102 | 180 | 87 | 162 | 4.78e-12 | 63.9 |
MS.gene054275.t1 | MTR_5g081860 | 39.744 | 78 | 42 | 2 | 107 | 184 | 125 | 197 | 1.56e-11 | 62.8 |
MS.gene054275.t1 | MTR_1g048660 | 47.170 | 53 | 28 | 0 | 108 | 160 | 13 | 65 | 1.77e-11 | 59.3 |
MS.gene054275.t1 | MTR_3g462790 | 48.980 | 49 | 25 | 0 | 105 | 153 | 145 | 193 | 2.72e-11 | 62.4 |
MS.gene054275.t1 | MTR_5g069710 | 51.064 | 47 | 23 | 0 | 107 | 153 | 132 | 178 | 3.09e-11 | 62.4 |
MS.gene054275.t1 | MTR_8g063870 | 31.000 | 100 | 52 | 1 | 109 | 191 | 94 | 193 | 7.05e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054275.t1 | AT5G58900 | 51.020 | 49 | 24 | 0 | 105 | 153 | 139 | 187 | 9.61e-12 | 63.5 |
MS.gene054275.t1 | AT5G05790 | 38.158 | 76 | 40 | 1 | 86 | 154 | 103 | 178 | 1.62e-11 | 62.8 |
MS.gene054275.t1 | AT5G05790 | 38.158 | 76 | 40 | 1 | 86 | 154 | 103 | 178 | 1.62e-11 | 62.8 |
MS.gene054275.t1 | AT2G38090 | 51.020 | 49 | 24 | 0 | 105 | 153 | 139 | 187 | 3.23e-11 | 62.4 |
MS.gene054275.t1 | AT3G11280 | 39.683 | 63 | 34 | 1 | 107 | 169 | 127 | 185 | 3.64e-11 | 61.6 |
MS.gene054275.t1 | AT3G11280 | 39.683 | 63 | 34 | 1 | 107 | 169 | 127 | 185 | 3.64e-11 | 61.6 |
MS.gene054275.t1 | AT5G01200 | 45.205 | 73 | 34 | 3 | 98 | 168 | 136 | 204 | 5.70e-11 | 61.2 |
Find 78 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATAAAATGTTGGAACTTC+TGG | 0.186491 | 6.1:-25555967 | None:intergenic |
GTAGAAACATGGTCAAAATT+AGG | 0.206701 | 6.1:-25554897 | None:intergenic |
ACACATATGTGCCTGGTTTA+AGG | 0.215050 | 6.1:+25555881 | MS.gene054275:CDS |
ACCACCATGCGTGGCAGGTT+GGG | 0.256884 | 6.1:-25555033 | None:intergenic |
CCGATACCAAACTACTTTGT+TGG | 0.348196 | 6.1:+25554953 | MS.gene054275:CDS |
GTTGATTTGGAACTTCGTTT+AGG | 0.363323 | 6.1:+25556078 | MS.gene054275:CDS |
TAGAAACATGGTCAAAATTA+GGG | 0.380235 | 6.1:-25554896 | None:intergenic |
GTGATGGGGATGATTAAGTA+TGG | 0.403039 | 6.1:+25555760 | MS.gene054275:CDS |
TGTCTTAGCTTATTAGTGAT+GGG | 0.419172 | 6.1:+25555745 | MS.gene054275:intron |
GCTATGCTACTAGCTTCTTC+AGG | 0.423580 | 6.1:+25555848 | MS.gene054275:CDS |
TGGTCATGGAGAAGTTGATT+TGG | 0.426283 | 6.1:+25556065 | MS.gene054275:CDS |
ATGGTACCAACAAAGTAGTT+TGG | 0.427880 | 6.1:-25554959 | None:intergenic |
CCACCATGCGTGGCAGGTTG+GGG | 0.429517 | 6.1:-25555032 | None:intergenic |
GTCGGAGAACCCTAGCAATT+AGG | 0.429758 | 6.1:-25555058 | None:intergenic |
TACCACCATGCGTGGCAGGT+TGG | 0.432276 | 6.1:-25555034 | None:intergenic |
TTAAGTATGGAAAAGGGAAA+TGG | 0.433708 | 6.1:+25555773 | MS.gene054275:CDS |
ACTCCTCCTGTTGTTTATGT+TGG | 0.436800 | 6.1:+25556045 | MS.gene054275:CDS |
GGGATGATTAAGTATGGAAA+AGG | 0.439099 | 6.1:+25555766 | MS.gene054275:CDS |
ATGTGCCTGGTTTAAGGAAA+AGG | 0.449777 | 6.1:+25555887 | MS.gene054275:CDS |
CGTGGCAGGTTGGGGCCAAC+TGG | 0.450946 | 6.1:-25555024 | None:intergenic |
CCATGCGCATAGATCCATTT+GGG | 0.461630 | 6.1:-25555109 | None:intergenic |
CCTGTTGTTTATGTTGGTCA+TGG | 0.461697 | 6.1:+25556051 | MS.gene054275:CDS |
ACCATGCGCATAGATCCATT+TGG | 0.463755 | 6.1:-25555110 | None:intergenic |
AGGCTACCACCATGCGTGGC+AGG | 0.474105 | 6.1:-25555038 | None:intergenic |
TTGTCTTAGCTTATTAGTGA+TGG | 0.474565 | 6.1:+25555744 | MS.gene054275:intron |
TAGTGATTCGAGGGGACTCA+TGG | 0.480822 | 6.1:-25555001 | None:intergenic |
TGGTCAAAATTAGGGATCAT+TGG | 0.484624 | 6.1:-25554888 | None:intergenic |
AGTGCTATCTTCATAGTTGT+TGG | 0.485291 | 6.1:-25556016 | None:intergenic |
GTGTGTCCTTGAGGAGTTGA+TGG | 0.490099 | 6.1:-25554978 | None:intergenic |
AGTGGCATGGTGTCTGATCT+AGG | 0.495662 | 6.1:-25555086 | None:intergenic |
GTCTTAGCTTATTAGTGATG+GGG | 0.500061 | 6.1:+25555746 | MS.gene054275:intron |
CCATGACCAACATAAACAAC+AGG | 0.501280 | 6.1:-25556051 | None:intergenic |
CTGGTTTAAGGAAAAGGAAA+AGG | 0.505107 | 6.1:+25555893 | MS.gene054275:CDS |
GACACCATGCCACTCCCAAA+TGG | 0.506453 | 6.1:+25555095 | MS.gene054275:CDS |
GTCAAGGAAGTTTGTAAGAT+CGG | 0.507950 | 6.1:-25554829 | None:intergenic |
ATGGTGGTAGCCTAATTGCT+AGG | 0.514195 | 6.1:+25555048 | MS.gene054275:CDS |
GACTCATGGGTGTGTCCTTG+AGG | 0.515070 | 6.1:-25554987 | None:intergenic |
GCATAGCTTTGAACTTGTTG+TGG | 0.515534 | 6.1:-25555832 | None:intergenic |
AAACCAGGCACATATGTGTC+TGG | 0.517405 | 6.1:-25555877 | None:intergenic |
GATGAAGATATGTGTGGTGA+TGG | 0.524416 | 6.1:-25554858 | None:intergenic |
GGCCAACTGGTAGTGATTCG+AGG | 0.525016 | 6.1:-25555011 | None:intergenic |
GATCTATGCGCATGGTGCCT+TGG | 0.535866 | 6.1:+25555117 | MS.gene054275:CDS |
TGGCCCCAACCTGCCACGCA+TGG | 0.536871 | 6.1:+25555029 | MS.gene054275:CDS |
TCGACATGGTGGTGGAGATA+AGG | 0.542804 | 6.1:-25554924 | None:intergenic |
CGCATAGATCCATTTGGGAG+TGG | 0.544378 | 6.1:-25555104 | None:intergenic |
GCTTCTCCTCCATAAAATGT+TGG | 0.545997 | 6.1:-25555976 | None:intergenic |
ATAAACAACAGGAGGAGTCA+TGG | 0.558653 | 6.1:-25556040 | None:intergenic |
GGATGATTAAGTATGGAAAA+GGG | 0.561038 | 6.1:+25555767 | MS.gene054275:CDS |
GCCAACTGGTAGTGATTCGA+GGG | 0.562803 | 6.1:-25555010 | None:intergenic |
CTACCAGACACATATGTGCC+TGG | 0.565187 | 6.1:+25555874 | MS.gene054275:CDS |
AAGATATGTGTGGTGATGGA+GGG | 0.566805 | 6.1:-25554854 | None:intergenic |
CCAACAAAGTAGTTTGGTAT+CGG | 0.568651 | 6.1:-25554953 | None:intergenic |
GGTGGTGTTCGACATGGTGG+TGG | 0.569038 | 6.1:-25554932 | None:intergenic |
GAAGATATGTGTGGTGATGG+AGG | 0.578211 | 6.1:-25554855 | None:intergenic |
TGTTAACAATGATCTTGCAA+AGG | 0.578401 | 6.1:+25555927 | MS.gene054275:CDS |
GGTATCGGTGGTGTTCGACA+TGG | 0.578416 | 6.1:-25554938 | None:intergenic |
TGGTGGTAGCCTAATTGCTA+GGG | 0.579794 | 6.1:+25555049 | MS.gene054275:CDS |
CCCCAACCTGCCACGCATGG+TGG | 0.582958 | 6.1:+25555032 | MS.gene054275:CDS |
GTGGTGATGGAGGGGAGTCA+AGG | 0.585853 | 6.1:-25554845 | None:intergenic |
ATGGTGGTGGAGATAAGGAT+TGG | 0.589002 | 6.1:-25554919 | None:intergenic |
AGTGATTCGAGGGGACTCAT+GGG | 0.590746 | 6.1:-25555000 | None:intergenic |
CCCAAATGGATCTATGCGCA+TGG | 0.594678 | 6.1:+25555109 | MS.gene054275:CDS |
TTGGTACCATCAACTCCTCA+AGG | 0.595641 | 6.1:+25554972 | MS.gene054275:CDS |
AGATATGTGTGGTGATGGAG+GGG | 0.610906 | 6.1:-25554853 | None:intergenic |
ATGGTGTCTGATCTAGGTAA+CGG | 0.612934 | 6.1:-25555080 | None:intergenic |
CAGGCACATATGTGTCTGGT+AGG | 0.613565 | 6.1:-25555873 | None:intergenic |
ATCGGTGGTGTTCGACATGG+TGG | 0.615063 | 6.1:-25554935 | None:intergenic |
AGATCCATTTGGGAGTGGCA+TGG | 0.617387 | 6.1:-25555099 | None:intergenic |
TCATGCTCTAATTGACTCCA+AGG | 0.619497 | 6.1:-25555134 | None:intergenic |
ACAAAGTAGTTTGGTATCGG+TGG | 0.636437 | 6.1:-25554950 | None:intergenic |
TGTCTGATCTAGGTAACGGT+CGG | 0.656457 | 6.1:-25555076 | None:intergenic |
CCCCTCGAATCACTACCAGT+TGG | 0.659827 | 6.1:+25555009 | MS.gene054275:CDS |
AATTAGGCTACCACCATGCG+TGG | 0.663656 | 6.1:-25555042 | None:intergenic |
TGACCAACATAAACAACAGG+AGG | 0.670875 | 6.1:-25556048 | None:intergenic |
GATAAGGATTGGTAGAAACA+TGG | 0.670885 | 6.1:-25554908 | None:intergenic |
AAGGAAGTTTGTAAGATCGG+TGG | 0.672731 | 6.1:-25554826 | None:intergenic |
GCATTAGATGAAGATATGTG+TGG | 0.745900 | 6.1:-25554864 | None:intergenic |
CCAACTGGTAGTGATTCGAG+GGG | 0.784198 | 6.1:-25555009 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAATAAAAAAAAAAGATTTA+AGG | - | chr6.1:25555177-25555196 | None:intergenic | 10.0% |
!!! | TTTGAATAATAAATTTTAAG+GGG | - | chr6.1:25555642-25555661 | None:intergenic | 10.0% |
!! | ACTAGAGAAATAAAAAAAAA+TGG | - | chr6.1:25555295-25555314 | None:intergenic | 15.0% |
!! | CTAGAGAAATAAAAAAAAAT+GGG | - | chr6.1:25555294-25555313 | None:intergenic | 15.0% |
!! | TAGAGAAATAAAAAAAAATG+GGG | - | chr6.1:25555293-25555312 | None:intergenic | 15.0% |
!!! | GGTTATTAGATAATAAATTT+TGG | + | chr6.1:25555570-25555589 | MS.gene054275:intron | 15.0% |
! | ATAACCTACGAATGTTTAAT+TGG | - | chr6.1:25555556-25555575 | None:intergenic | 25.0% |
! | TAGAAACATGGTCAAAATTA+GGG | - | chr6.1:25554899-25554918 | None:intergenic | 25.0% |
! | TCTATGATAAATTGTGAGTT+TGG | - | chr6.1:25555693-25555712 | None:intergenic | 25.0% |
!! | TGCCAGAAAATTTGAAATAA+TGG | - | chr6.1:25555382-25555401 | None:intergenic | 25.0% |
AACTCCAATTAAACATTCGT+AGG | + | chr6.1:25555549-25555568 | MS.gene054275:intron | 30.0% | |
GGATGATTAAGTATGGAAAA+GGG | + | chr6.1:25555767-25555786 | MS.gene054275:CDS | 30.0% | |
GTAGAAACATGGTCAAAATT+AGG | - | chr6.1:25554900-25554919 | None:intergenic | 30.0% | |
TGTCTTAGCTTATTAGTGAT+GGG | + | chr6.1:25555745-25555764 | MS.gene054275:intron | 30.0% | |
TGTTAACAATGATCTTGCAA+AGG | + | chr6.1:25555927-25555946 | MS.gene054275:CDS | 30.0% | |
TTAAGTATGGAAAAGGGAAA+TGG | + | chr6.1:25555773-25555792 | MS.gene054275:CDS | 30.0% | |
TTGAAATAATGGCCAACATA+TGG | - | chr6.1:25555371-25555390 | None:intergenic | 30.0% | |
TTGTCTTAGCTTATTAGTGA+TGG | + | chr6.1:25555744-25555763 | MS.gene054275:intron | 30.0% | |
! | GGCCATTATTTCAAATTTTC+TGG | + | chr6.1:25555377-25555396 | MS.gene054275:intron | 30.0% |
AGTGCTATCTTCATAGTTGT+TGG | - | chr6.1:25556019-25556038 | None:intergenic | 35.0% | |
ATGGTACCAACAAAGTAGTT+TGG | - | chr6.1:25554962-25554981 | None:intergenic | 35.0% | |
CCAACAAAGTAGTTTGGTAT+CGG | - | chr6.1:25554956-25554975 | None:intergenic | 35.0% | |
CCATAAAATGTTGGAACTTC+TGG | - | chr6.1:25555970-25555989 | None:intergenic | 35.0% | |
CTGGTTTAAGGAAAAGGAAA+AGG | + | chr6.1:25555893-25555912 | MS.gene054275:CDS | 35.0% | |
GCATTAGATGAAGATATGTG+TGG | - | chr6.1:25554867-25554886 | None:intergenic | 35.0% | |
GGGATGATTAAGTATGGAAA+AGG | + | chr6.1:25555766-25555785 | MS.gene054275:CDS | 35.0% | |
GTCAAGGAAGTTTGTAAGAT+CGG | - | chr6.1:25554832-25554851 | None:intergenic | 35.0% | |
GTCTTAGCTTATTAGTGATG+GGG | + | chr6.1:25555746-25555765 | MS.gene054275:intron | 35.0% | |
TGGTCAAAATTAGGGATCAT+TGG | - | chr6.1:25554891-25554910 | None:intergenic | 35.0% | |
! | CCAGAAGTTCCAACATTTTA+TGG | + | chr6.1:25555967-25555986 | MS.gene054275:CDS | 35.0% |
! | CTTTTCCTTTTCCTTAAACC+AGG | - | chr6.1:25555895-25555914 | None:intergenic | 35.0% |
! | GAAGTTCCAACATTTTATGG+AGG | + | chr6.1:25555970-25555989 | MS.gene054275:CDS | 35.0% |
! | GATAAGGATTGGTAGAAACA+TGG | - | chr6.1:25554911-25554930 | None:intergenic | 35.0% |
!! | GTTGATTTGGAACTTCGTTT+AGG | + | chr6.1:25556078-25556097 | MS.gene054275:CDS | 35.0% |
AAGGAAGTTTGTAAGATCGG+TGG | - | chr6.1:25554829-25554848 | None:intergenic | 40.0% | |
ACACATATGTGCCTGGTTTA+AGG | + | chr6.1:25555881-25555900 | MS.gene054275:CDS | 40.0% | |
ATAAACAACAGGAGGAGTCA+TGG | - | chr6.1:25556043-25556062 | None:intergenic | 40.0% | |
ATGGTGTCTGATCTAGGTAA+CGG | - | chr6.1:25555083-25555102 | None:intergenic | 40.0% | |
ATGTGCCTGGTTTAAGGAAA+AGG | + | chr6.1:25555887-25555906 | MS.gene054275:CDS | 40.0% | |
CCATGACCAACATAAACAAC+AGG | - | chr6.1:25556054-25556073 | None:intergenic | 40.0% | |
CCGATACCAAACTACTTTGT+TGG | + | chr6.1:25554953-25554972 | MS.gene054275:CDS | 40.0% | |
CTCACTTCTACACCATATGT+TGG | + | chr6.1:25555356-25555375 | MS.gene054275:intron | 40.0% | |
GATGAAGATATGTGTGGTGA+TGG | - | chr6.1:25554861-25554880 | None:intergenic | 40.0% | |
GCTTCTCCTCCATAAAATGT+TGG | - | chr6.1:25555979-25555998 | None:intergenic | 40.0% | |
TGACCAACATAAACAACAGG+AGG | - | chr6.1:25556051-25556070 | None:intergenic | 40.0% | |
! | ACAAAGTAGTTTGGTATCGG+TGG | - | chr6.1:25554953-25554972 | None:intergenic | 40.0% |
! | ACTCCTCCTGTTGTTTATGT+TGG | + | chr6.1:25556045-25556064 | MS.gene054275:CDS | 40.0% |
! | CCTGTTGTTTATGTTGGTCA+TGG | + | chr6.1:25556051-25556070 | MS.gene054275:CDS | 40.0% |
! | GTGATGGGGATGATTAAGTA+TGG | + | chr6.1:25555760-25555779 | MS.gene054275:CDS | 40.0% |
! | TCATGCTCTAATTGACTCCA+AGG | - | chr6.1:25555137-25555156 | None:intergenic | 40.0% |
! | TGGTCATGGAGAAGTTGATT+TGG | + | chr6.1:25556065-25556084 | MS.gene054275:CDS | 40.0% |
!! | AAGATATGTGTGGTGATGGA+GGG | - | chr6.1:25554857-25554876 | None:intergenic | 40.0% |
!! | GCATAGCTTTGAACTTGTTG+TGG | - | chr6.1:25555835-25555854 | None:intergenic | 40.0% |
AAACCAGGCACATATGTGTC+TGG | - | chr6.1:25555880-25555899 | None:intergenic | 45.0% | |
ACCATGCGCATAGATCCATT+TGG | - | chr6.1:25555113-25555132 | None:intergenic | 45.0% | |
ATGGTGGTAGCCTAATTGCT+AGG | + | chr6.1:25555048-25555067 | MS.gene054275:CDS | 45.0% | |
CCATGCGCATAGATCCATTT+GGG | - | chr6.1:25555112-25555131 | None:intergenic | 45.0% | |
TGGTGGTAGCCTAATTGCTA+GGG | + | chr6.1:25555049-25555068 | MS.gene054275:CDS | 45.0% | |
TTGGTACCATCAACTCCTCA+AGG | + | chr6.1:25554972-25554991 | MS.gene054275:CDS | 45.0% | |
! | GCTATGCTACTAGCTTCTTC+AGG | + | chr6.1:25555848-25555867 | MS.gene054275:CDS | 45.0% |
! | TGTCTGATCTAGGTAACGGT+CGG | - | chr6.1:25555079-25555098 | None:intergenic | 45.0% |
!! | AGATATGTGTGGTGATGGAG+GGG | - | chr6.1:25554856-25554875 | None:intergenic | 45.0% |
!! | ATGGTGGTGGAGATAAGGAT+TGG | - | chr6.1:25554922-25554941 | None:intergenic | 45.0% |
!! | GAAGATATGTGTGGTGATGG+AGG | - | chr6.1:25554858-25554877 | None:intergenic | 45.0% |
!!! | AATTTGAATAATAAATTTTA+AGG | - | chr6.1:25555644-25555663 | None:intergenic | 5.0% |
!!! | ATTTGAATAATAAATTTTAA+GGG | - | chr6.1:25555643-25555662 | None:intergenic | 5.0% |
AATTAGGCTACCACCATGCG+TGG | - | chr6.1:25555045-25555064 | None:intergenic | 50.0% | |
AGATCCATTTGGGAGTGGCA+TGG | - | chr6.1:25555102-25555121 | None:intergenic | 50.0% | |
AGTGATTCGAGGGGACTCAT+GGG | - | chr6.1:25555003-25555022 | None:intergenic | 50.0% | |
AGTGGCATGGTGTCTGATCT+AGG | - | chr6.1:25555089-25555108 | None:intergenic | 50.0% | |
CAGGCACATATGTGTCTGGT+AGG | - | chr6.1:25555876-25555895 | None:intergenic | 50.0% | |
CCCAAATGGATCTATGCGCA+TGG | + | chr6.1:25555109-25555128 | MS.gene054275:CDS | 50.0% | |
CGCATAGATCCATTTGGGAG+TGG | - | chr6.1:25555107-25555126 | None:intergenic | 50.0% | |
CTACCAGACACATATGTGCC+TGG | + | chr6.1:25555874-25555893 | MS.gene054275:CDS | 50.0% | |
GTCGGAGAACCCTAGCAATT+AGG | - | chr6.1:25555061-25555080 | None:intergenic | 50.0% | |
GTGTGTCCTTGAGGAGTTGA+TGG | - | chr6.1:25554981-25555000 | None:intergenic | 50.0% | |
TAGTGATTCGAGGGGACTCA+TGG | - | chr6.1:25555004-25555023 | None:intergenic | 50.0% | |
! | CCAACTGGTAGTGATTCGAG+GGG | - | chr6.1:25555012-25555031 | None:intergenic | 50.0% |
! | GCCAACTGGTAGTGATTCGA+GGG | - | chr6.1:25555013-25555032 | None:intergenic | 50.0% |
!! | TCGACATGGTGGTGGAGATA+AGG | - | chr6.1:25554927-25554946 | None:intergenic | 50.0% |
ATCGGTGGTGTTCGACATGG+TGG | - | chr6.1:25554938-25554957 | None:intergenic | 55.0% | |
CCCCTCGAATCACTACCAGT+TGG | + | chr6.1:25555009-25555028 | MS.gene054275:CDS | 55.0% | |
GACACCATGCCACTCCCAAA+TGG | + | chr6.1:25555095-25555114 | MS.gene054275:CDS | 55.0% | |
GACTCATGGGTGTGTCCTTG+AGG | - | chr6.1:25554990-25555009 | None:intergenic | 55.0% | |
GATCTATGCGCATGGTGCCT+TGG | + | chr6.1:25555117-25555136 | MS.gene054275:CDS | 55.0% | |
! | GGCCAACTGGTAGTGATTCG+AGG | - | chr6.1:25555014-25555033 | None:intergenic | 55.0% |
!! | GGTATCGGTGGTGTTCGACA+TGG | - | chr6.1:25554941-25554960 | None:intergenic | 55.0% |
ACCACCATGCGTGGCAGGTT+GGG | - | chr6.1:25555036-25555055 | None:intergenic | 60.0% | |
GGTGGTGTTCGACATGGTGG+TGG | - | chr6.1:25554935-25554954 | None:intergenic | 60.0% | |
TACCACCATGCGTGGCAGGT+TGG | - | chr6.1:25555037-25555056 | None:intergenic | 60.0% | |
!! | GTGGTGATGGAGGGGAGTCA+AGG | - | chr6.1:25554848-25554867 | None:intergenic | 60.0% |
AGGCTACCACCATGCGTGGC+AGG | - | chr6.1:25555041-25555060 | None:intergenic | 65.0% | |
CCACCATGCGTGGCAGGTTG+GGG | - | chr6.1:25555035-25555054 | None:intergenic | 65.0% | |
CCCCAACCTGCCACGCATGG+TGG | + | chr6.1:25555032-25555051 | MS.gene054275:CDS | 70.0% | |
TGGCCCCAACCTGCCACGCA+TGG | + | chr6.1:25555029-25555048 | MS.gene054275:CDS | 70.0% | |
! | CGTGGCAGGTTGGGGCCAAC+TGG | - | chr6.1:25555027-25555046 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 25554813 | 25556110 | 25554813 | ID=MS.gene054275 |
chr6.1 | mRNA | 25554813 | 25556110 | 25554813 | ID=MS.gene054275.t1;Parent=MS.gene054275 |
chr6.1 | exon | 25554813 | 25555156 | 25554813 | ID=MS.gene054275.t1.exon1;Parent=MS.gene054275.t1 |
chr6.1 | CDS | 25554813 | 25555156 | 25554813 | ID=cds.MS.gene054275.t1;Parent=MS.gene054275.t1 |
chr6.1 | exon | 25555753 | 25556110 | 25555753 | ID=MS.gene054275.t1.exon2;Parent=MS.gene054275.t1 |
chr6.1 | CDS | 25555753 | 25556110 | 25555753 | ID=cds.MS.gene054275.t1;Parent=MS.gene054275.t1 |
Gene Sequence |
Protein sequence |