Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054276.t1 | KEH26068.1 | 85.2 | 230 | 33 | 1 | 1 | 229 | 1 | 230 | 2.70E-106 | 394.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054276.t1 | Q8S9H7 | 45.0 | 60 | 33 | 0 | 93 | 152 | 119 | 178 | 5.3e-10 | 66.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054276.t1 | A0A072UAF3 | 85.2 | 230 | 33 | 1 | 1 | 229 | 1 | 230 | 1.9e-106 | 394.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene054276.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054276.t1 | MTR_6g043490 | 88.261 | 230 | 26 | 1 | 1 | 229 | 1 | 230 | 4.98e-129 | 363 |
| MS.gene054276.t1 | MTR_6g043480 | 85.217 | 230 | 33 | 1 | 1 | 229 | 1 | 230 | 1.27e-125 | 355 |
| MS.gene054276.t1 | MTR_8g072990 | 65.863 | 249 | 56 | 7 | 1 | 228 | 1 | 241 | 1.54e-98 | 287 |
| MS.gene054276.t1 | MTR_8g073050 | 56.466 | 232 | 90 | 7 | 1 | 229 | 1 | 224 | 4.49e-65 | 201 |
| MS.gene054276.t1 | MTR_5g027570 | 40.506 | 79 | 44 | 1 | 101 | 179 | 87 | 162 | 2.01e-13 | 67.4 |
| MS.gene054276.t1 | MTR_4g111975 | 38.272 | 81 | 41 | 2 | 103 | 178 | 135 | 211 | 8.99e-13 | 66.6 |
| MS.gene054276.t1 | MTR_5g081860 | 39.506 | 81 | 44 | 2 | 103 | 183 | 122 | 197 | 1.23e-12 | 65.9 |
| MS.gene054276.t1 | MTR_1g048660 | 47.170 | 53 | 28 | 0 | 107 | 159 | 13 | 65 | 5.92e-12 | 60.5 |
| MS.gene054276.t1 | MTR_3g462790 | 48.000 | 50 | 26 | 0 | 103 | 152 | 144 | 193 | 6.35e-12 | 64.3 |
| MS.gene054276.t1 | MTR_5g069710 | 48.000 | 50 | 26 | 0 | 103 | 152 | 129 | 178 | 7.10e-12 | 63.9 |
| MS.gene054276.t1 | MTR_8g063870 | 31.000 | 100 | 52 | 1 | 108 | 190 | 94 | 193 | 2.05e-11 | 62.4 |
| MS.gene054276.t1 | MTR_2g100930 | 37.143 | 70 | 40 | 1 | 103 | 172 | 106 | 171 | 2.15e-11 | 62.8 |
| MS.gene054276.t1 | MTR_7g067080 | 38.462 | 78 | 42 | 2 | 95 | 171 | 129 | 201 | 2.56e-11 | 62.4 |
| MS.gene054276.t1 | MTR_8g101650 | 36.486 | 74 | 42 | 1 | 99 | 172 | 98 | 166 | 3.21e-11 | 62.0 |
| MS.gene054276.t1 | MTR_1g111830 | 37.662 | 77 | 46 | 1 | 100 | 176 | 118 | 192 | 6.23e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054276.t1 | AT5G05790 | 36.905 | 84 | 48 | 2 | 88 | 171 | 114 | 192 | 1.48e-12 | 65.9 |
| MS.gene054276.t1 | AT5G05790 | 36.905 | 84 | 48 | 2 | 88 | 171 | 114 | 192 | 1.48e-12 | 65.9 |
| MS.gene054276.t1 | AT5G58900 | 50.000 | 50 | 25 | 0 | 103 | 152 | 138 | 187 | 1.81e-12 | 65.5 |
| MS.gene054276.t1 | AT2G38090 | 42.029 | 69 | 36 | 1 | 103 | 171 | 138 | 202 | 1.92e-12 | 65.5 |
| MS.gene054276.t1 | AT1G49010 | 40.580 | 69 | 37 | 1 | 103 | 171 | 131 | 195 | 1.97e-12 | 65.9 |
| MS.gene054276.t1 | AT3G11280 | 37.681 | 69 | 39 | 1 | 103 | 171 | 124 | 188 | 5.65e-12 | 63.9 |
| MS.gene054276.t1 | AT3G11280 | 37.681 | 69 | 39 | 1 | 103 | 171 | 124 | 188 | 5.65e-12 | 63.9 |
| MS.gene054276.t1 | AT5G01200 | 46.575 | 73 | 33 | 3 | 97 | 167 | 136 | 204 | 7.93e-12 | 63.5 |
| MS.gene054276.t1 | AT5G08520 | 45.283 | 53 | 29 | 0 | 103 | 155 | 115 | 167 | 1.28e-11 | 63.2 |
| MS.gene054276.t1 | AT3G16350 | 46.000 | 50 | 27 | 0 | 103 | 152 | 134 | 183 | 4.04e-11 | 62.4 |
| MS.gene054276.t1 | AT1G19000 | 46.154 | 52 | 28 | 0 | 101 | 152 | 97 | 148 | 4.83e-11 | 61.6 |
| MS.gene054276.t1 | AT1G19000 | 46.154 | 52 | 28 | 0 | 101 | 152 | 97 | 148 | 4.83e-11 | 61.6 |
| MS.gene054276.t1 | AT5G04760 | 42.188 | 64 | 35 | 1 | 103 | 166 | 96 | 157 | 6.68e-11 | 60.5 |
Find 75 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATAAAATGTTGGGACTTC+TGG | 0.175584 | 6.1:-25523803 | None:intergenic |
| ACACATATGTGCATGGTTTA+AGG | 0.242121 | 6.1:+25523717 | MS.gene054276:CDS |
| GCCACCATGTGTGGTAGGTT+GGG | 0.251957 | 6.1:-25522780 | None:intergenic |
| TAGGAACATGGTCAAAATTA+AGG | 0.310347 | 6.1:-25522643 | None:intergenic |
| TGCCACCATGTGTGGTAGGT+TGG | 0.386349 | 6.1:-25522781 | None:intergenic |
| TGTCTTAGCTTGTTTGTGAT+GGG | 0.414379 | 6.1:+25523581 | MS.gene054276:intron |
| GTCGGAGAACCCTTGCAATT+AGG | 0.416172 | 6.1:-25522805 | None:intergenic |
| GTGATGGGGATGATTAAGTA+TGG | 0.417542 | 6.1:+25523596 | MS.gene054276:CDS |
| TGTGGTAGGTTGGGGCCAAT+TGG | 0.422957 | 6.1:-25522771 | None:intergenic |
| GTAAGATCAGTGATCTCAAT+AGG | 0.430973 | 6.1:-25522566 | None:intergenic |
| TGGACATGGTGGTGAAGATT+AGG | 0.432756 | 6.1:-25522671 | None:intergenic |
| TTAAGTATGGAAAAGGGAAA+TGG | 0.433708 | 6.1:+25523609 | MS.gene054276:CDS |
| TTGTCTTAGCTTGTTTGTGA+TGG | 0.436083 | 6.1:+25523580 | MS.gene054276:intron |
| TGGGTGTGTCCTTGAGCTGT+TGG | 0.438020 | 6.1:-25522728 | None:intergenic |
| GGGATGATTAAGTATGGAAA+AGG | 0.439099 | 6.1:+25523602 | MS.gene054276:CDS |
| GCTATGCTAATAGCTTCTTC+AGG | 0.441719 | 6.1:+25523684 | MS.gene054276:CDS |
| ATGTGCATGGTTTAAGGAAA+AGG | 0.449777 | 6.1:+25523723 | MS.gene054276:CDS |
| GTGGTAGCAACAAATTCGTT+TGG | 0.454386 | 6.1:-25522706 | None:intergenic |
| CCATGCGCCTAGATCCATTT+GGG | 0.454900 | 6.1:-25522856 | None:intergenic |
| ATGACTCTTCCTGCCGGTGA+TGG | 0.458844 | 6.1:+25523878 | MS.gene054276:CDS |
| ACCATGCGCCTAGATCCATT+TGG | 0.463755 | 6.1:-25522857 | None:intergenic |
| CTTCTCCTCCATAAAATGTT+GGG | 0.467568 | 6.1:-25523811 | None:intergenic |
| AGTGTTTGCTTCATAGTTGT+TGG | 0.469683 | 6.1:-25523852 | None:intergenic |
| AGGGTTCTCCGACCGTTACC+TGG | 0.477357 | 6.1:+25522815 | MS.gene054276:CDS |
| TGCCATTCCCAAATGGATCT+AGG | 0.484246 | 6.1:+25522849 | MS.gene054276:CDS |
| TCGTTTGGTGTCTGTGGTGT+TGG | 0.487058 | 6.1:-25522691 | None:intergenic |
| GGTGTCTGTGGTGTTGGACA+TGG | 0.488513 | 6.1:-25522685 | None:intergenic |
| AAACCATGCACATATGTGTC+TGG | 0.497935 | 6.1:-25523713 | None:intergenic |
| CAGTGATTCGAAAGGACTCA+TGG | 0.501395 | 6.1:-25522748 | None:intergenic |
| CCTTTCGAATCACTGCCAAT+TGG | 0.501751 | 6.1:+25522756 | MS.gene054276:CDS |
| GATCTAGGCGCATGGTGCCT+TGG | 0.505252 | 6.1:+25522864 | MS.gene054276:CDS |
| ATGGTTTAAGGAAAAGGAAA+AGG | 0.505645 | 6.1:+25523729 | MS.gene054276:CDS |
| GCTTCTCCTCCATAAAATGT+TGG | 0.506183 | 6.1:-25523812 | None:intergenic |
| GCATAGCTTTGAACTTGTTG+TGG | 0.507199 | 6.1:-25523668 | None:intergenic |
| CCACCATGTGTGGTAGGTTG+GGG | 0.508775 | 6.1:-25522779 | None:intergenic |
| TGGTGAAGATTAGGATTGGT+AGG | 0.518307 | 6.1:-25522662 | None:intergenic |
| GACACCATGCCATTCCCAAA+TGG | 0.525818 | 6.1:+25522842 | MS.gene054276:CDS |
| CACATCAACTTCTCCATCAC+CGG | 0.529944 | 6.1:-25523891 | None:intergenic |
| AATGGCATGGTGTCTGATCC+AGG | 0.529965 | 6.1:-25522833 | None:intergenic |
| CGCCTAGATCCATTTGGGAA+TGG | 0.533156 | 6.1:-25522851 | None:intergenic |
| GTCTTAGCTTGTTTGTGATG+GGG | 0.545750 | 6.1:+25523582 | MS.gene054276:intron |
| TGTTAACAATGATCTTGCAA+AGG | 0.549384 | 6.1:+25523763 | MS.gene054276:CDS |
| TTGCTACCACCAACAGCTCA+AGG | 0.550478 | 6.1:+25522719 | MS.gene054276:CDS |
| GGATGATTAAGTATGGAAAA+GGG | 0.561038 | 6.1:+25523603 | MS.gene054276:CDS |
| AAGATACATGTGGTGATGGA+GGG | 0.566805 | 6.1:-25522601 | None:intergenic |
| GAAGATACATGTGGTGATGG+AGG | 0.573183 | 6.1:-25522602 | None:intergenic |
| GTGGTGATGGAGGGGAGTCA+AGG | 0.575620 | 6.1:-25522592 | None:intergenic |
| GTGTGTCCTTGAGCTGTTGG+TGG | 0.577262 | 6.1:-25522725 | None:intergenic |
| GATGAAGATACATGTGGTGA+TGG | 0.583024 | 6.1:-25522605 | None:intergenic |
| ATGGTGGCAGCCTAATTGCA+AGG | 0.583767 | 6.1:+25522795 | MS.gene054276:CDS |
| GTCTGTGGTGTTGGACATGG+TGG | 0.588691 | 6.1:-25522682 | None:intergenic |
| ATGGTGGTGAAGATTAGGAT+TGG | 0.591721 | 6.1:-25522666 | None:intergenic |
| TGGTCAAAATTAAGGATCGT+TGG | 0.592338 | 6.1:-25522635 | None:intergenic |
| ACAAATTCGTTTGGTGTCTG+TGG | 0.596867 | 6.1:-25522697 | None:intergenic |
| CCCAAATGGATCTAGGCGCA+TGG | 0.598806 | 6.1:+25522856 | MS.gene054276:CDS |
| TGGCCCCAACCTACCACACA+TGG | 0.605392 | 6.1:+25522776 | MS.gene054276:CDS |
| TCAACTTCTCCATCACCGGC+AGG | 0.609498 | 6.1:-25523887 | None:intergenic |
| CATGCACATATGTGTCTGGT+AGG | 0.610902 | 6.1:-25523709 | None:intergenic |
| AGATACATGTGGTGATGGAG+GGG | 0.610906 | 6.1:-25522600 | None:intergenic |
| TCATGATCTAATTGACTCCA+AGG | 0.611161 | 6.1:-25522881 | None:intergenic |
| ACTTCCATGACTCTTCCTGC+CGG | 0.612710 | 6.1:+25523872 | MS.gene054276:CDS |
| ATCACCGGCAGGAAGAGTCA+TGG | 0.612755 | 6.1:-25523876 | None:intergenic |
| ATGGTGTCTGATCCAGGTAA+CGG | 0.615417 | 6.1:-25522827 | None:intergenic |
| AGGCTGCCACCATGTGTGGT+AGG | 0.618914 | 6.1:-25522785 | None:intergenic |
| AGTGATTCGAAAGGACTCAT+GGG | 0.623065 | 6.1:-25522747 | None:intergenic |
| AGATCCATTTGGGAATGGCA+TGG | 0.633238 | 6.1:-25522846 | None:intergenic |
| GATTAGGATTGGTAGGAACA+TGG | 0.639384 | 6.1:-25522655 | None:intergenic |
| CTACCAGACACATATGTGCA+TGG | 0.648995 | 6.1:+25523710 | MS.gene054276:CDS |
| CCAATTGGCAGTGATTCGAA+AGG | 0.649536 | 6.1:-25522756 | None:intergenic |
| AATTAGGCTGCCACCATGTG+TGG | 0.652559 | 6.1:-25522789 | None:intergenic |
| TGGTGGCAGCCTAATTGCAA+GGG | 0.658330 | 6.1:+25522796 | MS.gene054276:CDS |
| TGTCTGATCCAGGTAACGGT+CGG | 0.658940 | 6.1:-25522823 | None:intergenic |
| CCCCAACCTACCACACATGG+TGG | 0.678573 | 6.1:+25522779 | MS.gene054276:CDS |
| CGGTGATGGAGAAGTTGATG+TGG | 0.699348 | 6.1:+25523892 | MS.gene054276:CDS |
| GCATTAGATGAAGATACATG+TGG | 0.746841 | 6.1:-25522611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTATCAAATAAAAAAATT+TGG | + | chr6.1:25523383-25523402 | MS.gene054276:intron | 10.0% |
| !!! | TATTGATCAATTTTTATTTA+CGG | + | chr6.1:25523279-25523298 | MS.gene054276:intron | 10.0% |
| !!! | TTTGAATAATAAATTTTAAG+GGG | - | chr6.1:25523478-25523497 | None:intergenic | 10.0% |
| !! | TAAAAAAATTTGGTAGAAAA+AGG | + | chr6.1:25523393-25523412 | MS.gene054276:intron | 15.0% |
| !! | AAAGGTTATTAAATAATGTG+CGG | + | chr6.1:25523411-25523430 | MS.gene054276:intron | 20.0% |
| ! | AAGGTTATTAAATAATGTGC+GGG | + | chr6.1:25523412-25523431 | MS.gene054276:intron | 25.0% |
| ! | AGAAAAACTTGAAATAGAGA+TGG | + | chr6.1:25523193-25523212 | MS.gene054276:intron | 25.0% |
| ! | GAGAGAAAGAAAACAAATTA+GGG | - | chr6.1:25523045-25523064 | None:intergenic | 25.0% |
| ! | TCTATGATAAATTGTGAGTT+TGG | - | chr6.1:25523529-25523548 | None:intergenic | 25.0% |
| ! | TGAGAGAAAGAAAACAAATT+AGG | - | chr6.1:25523046-25523065 | None:intergenic | 25.0% |
| ! | TTGAAATAATGGCCAATAAA+AGG | - | chr6.1:25523123-25523142 | None:intergenic | 25.0% |
| ATGGTTTAAGGAAAAGGAAA+AGG | + | chr6.1:25523729-25523748 | MS.gene054276:CDS | 30.0% | |
| GGATGATTAAGTATGGAAAA+GGG | + | chr6.1:25523603-25523622 | MS.gene054276:CDS | 30.0% | |
| TAGGAACATGGTCAAAATTA+AGG | - | chr6.1:25522646-25522665 | None:intergenic | 30.0% | |
| TGTTAACAATGATCTTGCAA+AGG | + | chr6.1:25523763-25523782 | MS.gene054276:CDS | 30.0% | |
| TTAAGTATGGAAAAGGGAAA+TGG | + | chr6.1:25523609-25523628 | MS.gene054276:CDS | 30.0% | |
| ! | CTCATTTCTACTCCTTTTAT+TGG | + | chr6.1:25523108-25523127 | MS.gene054276:intron | 30.0% |
| ! | TGCCAGAGAATTTGAAATAA+TGG | - | chr6.1:25523134-25523153 | None:intergenic | 30.0% |
| ACACATATGTGCATGGTTTA+AGG | + | chr6.1:25523717-25523736 | MS.gene054276:CDS | 35.0% | |
| AGTGTTTGCTTCATAGTTGT+TGG | - | chr6.1:25523855-25523874 | None:intergenic | 35.0% | |
| ATGTGCATGGTTTAAGGAAA+AGG | + | chr6.1:25523723-25523742 | MS.gene054276:CDS | 35.0% | |
| CTTCTCCTCCATAAAATGTT+GGG | - | chr6.1:25523814-25523833 | None:intergenic | 35.0% | |
| GCATTAGATGAAGATACATG+TGG | - | chr6.1:25522614-25522633 | None:intergenic | 35.0% | |
| GGCCATTATTTCAAATTCTC+TGG | + | chr6.1:25523129-25523148 | MS.gene054276:intron | 35.0% | |
| GGGATGATTAAGTATGGAAA+AGG | + | chr6.1:25523602-25523621 | MS.gene054276:CDS | 35.0% | |
| GTAAGATCAGTGATCTCAAT+AGG | - | chr6.1:25522569-25522588 | None:intergenic | 35.0% | |
| TGGTCAAAATTAAGGATCGT+TGG | - | chr6.1:25522638-25522657 | None:intergenic | 35.0% | |
| ! | TCATGATCTAATTGACTCCA+AGG | - | chr6.1:25522884-25522903 | None:intergenic | 35.0% |
| !! | TGTCTTAGCTTGTTTGTGAT+GGG | + | chr6.1:25523581-25523600 | MS.gene054276:intron | 35.0% |
| !! | TTGTCTTAGCTTGTTTGTGA+TGG | + | chr6.1:25523580-25523599 | MS.gene054276:intron | 35.0% |
| AAACCATGCACATATGTGTC+TGG | - | chr6.1:25523716-25523735 | None:intergenic | 40.0% | |
| AGTGATTCGAAAGGACTCAT+GGG | - | chr6.1:25522750-25522769 | None:intergenic | 40.0% | |
| CCATAAAATGTTGGGACTTC+TGG | - | chr6.1:25523806-25523825 | None:intergenic | 40.0% | |
| GATGAAGATACATGTGGTGA+TGG | - | chr6.1:25522608-25522627 | None:intergenic | 40.0% | |
| GCTATGCTAATAGCTTCTTC+AGG | + | chr6.1:25523684-25523703 | MS.gene054276:CDS | 40.0% | |
| GCTTCTCCTCCATAAAATGT+TGG | - | chr6.1:25523815-25523834 | None:intergenic | 40.0% | |
| GTGGTAGCAACAAATTCGTT+TGG | - | chr6.1:25522709-25522728 | None:intergenic | 40.0% | |
| ! | ATGGTGGTGAAGATTAGGAT+TGG | - | chr6.1:25522669-25522688 | None:intergenic | 40.0% |
| ! | CCAGAAGTCCCAACATTTTA+TGG | + | chr6.1:25523803-25523822 | MS.gene054276:CDS | 40.0% |
| ! | GAAGTCCCAACATTTTATGG+AGG | + | chr6.1:25523806-25523825 | MS.gene054276:CDS | 40.0% |
| ! | GATTAGGATTGGTAGGAACA+TGG | - | chr6.1:25522658-25522677 | None:intergenic | 40.0% |
| ! | GTGATGGGGATGATTAAGTA+TGG | + | chr6.1:25523596-25523615 | MS.gene054276:CDS | 40.0% |
| ! | TGGTGAAGATTAGGATTGGT+AGG | - | chr6.1:25522665-25522684 | None:intergenic | 40.0% |
| !! | AAGATACATGTGGTGATGGA+GGG | - | chr6.1:25522604-25522623 | None:intergenic | 40.0% |
| !! | ACAAATTCGTTTGGTGTCTG+TGG | - | chr6.1:25522700-25522719 | None:intergenic | 40.0% |
| !! | GCATAGCTTTGAACTTGTTG+TGG | - | chr6.1:25523671-25523690 | None:intergenic | 40.0% |
| !! | GTCTTAGCTTGTTTGTGATG+GGG | + | chr6.1:25523582-25523601 | MS.gene054276:intron | 40.0% |
| AGATCCATTTGGGAATGGCA+TGG | - | chr6.1:25522849-25522868 | None:intergenic | 45.0% | |
| ATGGTGTCTGATCCAGGTAA+CGG | - | chr6.1:25522830-25522849 | None:intergenic | 45.0% | |
| CACATCAACTTCTCCATCAC+CGG | - | chr6.1:25523894-25523913 | None:intergenic | 45.0% | |
| CAGTGATTCGAAAGGACTCA+TGG | - | chr6.1:25522751-25522770 | None:intergenic | 45.0% | |
| CATGCACATATGTGTCTGGT+AGG | - | chr6.1:25523712-25523731 | None:intergenic | 45.0% | |
| CCAATTGGCAGTGATTCGAA+AGG | - | chr6.1:25522759-25522778 | None:intergenic | 45.0% | |
| CCTTTCGAATCACTGCCAAT+TGG | + | chr6.1:25522756-25522775 | MS.gene054276:CDS | 45.0% | |
| CTACCAGACACATATGTGCA+TGG | + | chr6.1:25523710-25523729 | MS.gene054276:CDS | 45.0% | |
| TGCCATTCCCAAATGGATCT+AGG | + | chr6.1:25522849-25522868 | MS.gene054276:CDS | 45.0% | |
| ! | TGGACATGGTGGTGAAGATT+AGG | - | chr6.1:25522674-25522693 | None:intergenic | 45.0% |
| !! | AGATACATGTGGTGATGGAG+GGG | - | chr6.1:25522603-25522622 | None:intergenic | 45.0% |
| !! | GAAGATACATGTGGTGATGG+AGG | - | chr6.1:25522605-25522624 | None:intergenic | 45.0% |
| !! | AAAAAATAAAATTAGATTTA+AGG | - | chr6.1:25522924-25522943 | None:intergenic | 5.0% |
| !!! | AATTTGAATAATAAATTTTA+AGG | - | chr6.1:25523480-25523499 | None:intergenic | 5.0% |
| !!! | ATTTGAATAATAAATTTTAA+GGG | - | chr6.1:25523479-25523498 | None:intergenic | 5.0% |
| AATGGCATGGTGTCTGATCC+AGG | - | chr6.1:25522836-25522855 | None:intergenic | 50.0% | |
| AATTAGGCTGCCACCATGTG+TGG | - | chr6.1:25522792-25522811 | None:intergenic | 50.0% | |
| ACCATGCGCCTAGATCCATT+TGG | - | chr6.1:25522860-25522879 | None:intergenic | 50.0% | |
| ACTTCCATGACTCTTCCTGC+CGG | + | chr6.1:25523872-25523891 | MS.gene054276:CDS | 50.0% | |
| ATGGTGGCAGCCTAATTGCA+AGG | + | chr6.1:25522795-25522814 | MS.gene054276:CDS | 50.0% | |
| CCATGCGCCTAGATCCATTT+GGG | - | chr6.1:25522859-25522878 | None:intergenic | 50.0% | |
| CGCCTAGATCCATTTGGGAA+TGG | - | chr6.1:25522854-25522873 | None:intergenic | 50.0% | |
| GACACCATGCCATTCCCAAA+TGG | + | chr6.1:25522842-25522861 | MS.gene054276:CDS | 50.0% | |
| GTCGGAGAACCCTTGCAATT+AGG | - | chr6.1:25522808-25522827 | None:intergenic | 50.0% | |
| TGGTGGCAGCCTAATTGCAA+GGG | + | chr6.1:25522796-25522815 | MS.gene054276:CDS | 50.0% | |
| TTGCTACCACCAACAGCTCA+AGG | + | chr6.1:25522719-25522738 | MS.gene054276:CDS | 50.0% | |
| ! | TGTCTGATCCAGGTAACGGT+CGG | - | chr6.1:25522826-25522845 | None:intergenic | 50.0% |
| !! | CGGTGATGGAGAAGTTGATG+TGG | + | chr6.1:25523892-25523911 | MS.gene054276:CDS | 50.0% |
| !! | TCGTTTGGTGTCTGTGGTGT+TGG | - | chr6.1:25522694-25522713 | None:intergenic | 50.0% |
| ATCACCGGCAGGAAGAGTCA+TGG | - | chr6.1:25523879-25523898 | None:intergenic | 55.0% | |
| ATGACTCTTCCTGCCGGTGA+TGG | + | chr6.1:25523878-25523897 | MS.gene054276:CDS | 55.0% | |
| CCACCATGTGTGGTAGGTTG+GGG | - | chr6.1:25522782-25522801 | None:intergenic | 55.0% | |
| CCCAAATGGATCTAGGCGCA+TGG | + | chr6.1:25522856-25522875 | MS.gene054276:CDS | 55.0% | |
| GCCACCATGTGTGGTAGGTT+GGG | - | chr6.1:25522783-25522802 | None:intergenic | 55.0% | |
| GTGTGTCCTTGAGCTGTTGG+TGG | - | chr6.1:25522728-25522747 | None:intergenic | 55.0% | |
| TCAACTTCTCCATCACCGGC+AGG | - | chr6.1:25523890-25523909 | None:intergenic | 55.0% | |
| TGCCACCATGTGTGGTAGGT+TGG | - | chr6.1:25522784-25522803 | None:intergenic | 55.0% | |
| TGGGTGTGTCCTTGAGCTGT+TGG | - | chr6.1:25522731-25522750 | None:intergenic | 55.0% | |
| ! | GGTGTCTGTGGTGTTGGACA+TGG | - | chr6.1:25522688-25522707 | None:intergenic | 55.0% |
| ! | GTCTGTGGTGTTGGACATGG+TGG | - | chr6.1:25522685-25522704 | None:intergenic | 55.0% |
| ! | TGTGGTAGGTTGGGGCCAAT+TGG | - | chr6.1:25522774-25522793 | None:intergenic | 55.0% |
| AGGCTGCCACCATGTGTGGT+AGG | - | chr6.1:25522788-25522807 | None:intergenic | 60.0% | |
| AGGGTTCTCCGACCGTTACC+TGG | + | chr6.1:25522815-25522834 | MS.gene054276:CDS | 60.0% | |
| CCCCAACCTACCACACATGG+TGG | + | chr6.1:25522779-25522798 | MS.gene054276:CDS | 60.0% | |
| GATCTAGGCGCATGGTGCCT+TGG | + | chr6.1:25522864-25522883 | MS.gene054276:CDS | 60.0% | |
| TGGCCCCAACCTACCACACA+TGG | + | chr6.1:25522776-25522795 | MS.gene054276:CDS | 60.0% | |
| !! | GTGGTGATGGAGGGGAGTCA+AGG | - | chr6.1:25522595-25522614 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 25522563 | 25523937 | 25522563 | ID=MS.gene054276 |
| chr6.1 | mRNA | 25522563 | 25523937 | 25522563 | ID=MS.gene054276.t1;Parent=MS.gene054276 |
| chr6.1 | exon | 25522563 | 25522903 | 25522563 | ID=MS.gene054276.t1.exon1;Parent=MS.gene054276.t1 |
| chr6.1 | CDS | 25522563 | 25522903 | 25522563 | ID=cds.MS.gene054276.t1;Parent=MS.gene054276.t1 |
| chr6.1 | exon | 25523589 | 25523937 | 25523589 | ID=MS.gene054276.t1.exon2;Parent=MS.gene054276.t1 |
| chr6.1 | CDS | 25523589 | 25523937 | 25523589 | ID=cds.MS.gene054276.t1;Parent=MS.gene054276.t1 |
| Gene Sequence |
| Protein sequence |