AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054303

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054303.t1 MTR_8g019520 73.810 84 22 0 146 229 173 256 1.01e-29 111
MS.gene054303.t1 MTR_8g019520 73.810 84 22 0 146 229 172 255 1.03e-29 111
MS.gene054303.t1 MTR_0024s0330 53.333 105 46 2 27 131 78 179 4.28e-25 103
MS.gene054303.t1 MTR_2g099500 68.966 58 18 0 172 229 193 250 3.77e-24 97.1
MS.gene054303.t1 MTR_6g017265 53.061 98 43 2 27 124 87 181 3.28e-22 95.1
MS.gene054303.t1 MTR_1g015185 70.370 54 15 1 176 229 210 262 4.14e-21 89.0
MS.gene054303.t1 MTR_4g134510 65.385 52 18 0 175 226 201 252 1.04e-19 85.1
MS.gene054303.t1 MTR_2g040990 66.071 56 16 2 176 229 198 252 8.46e-19 82.8
MS.gene054303.t1 MTR_4g015830 62.963 54 19 1 176 229 187 239 1.10e-17 79.3
MS.gene054303.t1 MTR_7g068590 62.500 48 18 0 176 223 189 236 6.53e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054303.t1 AT3G42790 68.333 60 18 1 171 230 192 250 4.18e-23 94.0
MS.gene054303.t1 AT5G20510 66.102 59 19 1 171 229 161 218 2.82e-22 91.3
MS.gene054303.t1 AT5G20510 66.102 59 19 1 171 229 202 259 3.78e-22 91.7
MS.gene054303.t1 AT5G26210 71.930 57 15 1 174 230 200 255 1.10e-21 90.5
MS.gene054303.t1 AT2G02470 70.370 54 15 1 176 229 203 255 4.73e-21 89.0
MS.gene054303.t1 AT2G02470 70.370 54 15 1 176 229 194 246 5.92e-21 88.2
MS.gene054303.t1 AT1G14510 63.636 55 20 0 176 230 198 252 1.82e-20 87.0
MS.gene054303.t1 AT5G05610 67.308 52 17 0 171 222 183 234 1.89e-19 84.3
MS.gene054303.t1 AT5G05610 67.308 52 17 0 171 222 183 234 1.89e-19 84.3
MS.gene054303.t1 AT3G11200 38.686 137 73 4 86 222 101 226 2.91e-18 80.9
MS.gene054303.t1 AT3G11200 38.686 137 73 4 86 222 114 239 2.94e-18 81.3
MS.gene054303.t1 AT5G38690 53.731 67 31 0 27 93 64 130 7.62e-18 82.4
MS.gene054303.t1 AT5G38690 53.731 67 31 0 27 93 64 130 7.62e-18 82.4
MS.gene054303.t1 AT1G67780 55.000 60 27 0 27 86 67 126 2.97e-15 74.7
MS.gene054303.t1 AT1G67780 55.000 60 27 0 27 86 67 126 2.97e-15 74.7
MS.gene054303.t1 AT1G67270 52.632 57 27 0 30 86 62 118 2.77e-12 65.9

Find 62 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCATATTCTTCCTTTAT+AGG 0.158707 6.1:+24804546 None:intergenic
CAGAAAATCCAGAATTTATC+AGG 0.261065 6.1:+24803756 None:intergenic
TCTTCCACCTCCTCGTCTTT+AGG 0.273338 6.1:+24803846 None:intergenic
TACTAATGTTGGGCCTATAA+AGG 0.359306 6.1:-24804559 MS.gene054303:CDS
GGCACATCCAATTATTCAAA+AGG 0.404163 6.1:+24804840 None:intergenic
TGCAAATGCCTCTACACTTC+GGG 0.407999 6.1:+24804819 None:intergenic
GGCAATGGGTACCGAGGATT+GGG 0.415248 6.1:-24804303 MS.gene054303:CDS
ATATAAGCAGACTACGGCTT+TGG 0.416632 6.1:-24803874 MS.gene054303:intron
TATAAAGGAAGAATATGCTT+TGG 0.417141 6.1:-24804544 MS.gene054303:CDS
ATAAAGGAAGAATATGCTTT+GGG 0.425102 6.1:-24804543 MS.gene054303:CDS
GTTCGTATAGCCAAGGCATC+TGG 0.430043 6.1:-24804648 MS.gene054303:CDS
ATGGGTAATAATACTAATGT+TGG 0.432893 6.1:-24804570 MS.gene054303:CDS
TCGATATGCTTAGCCCTAGC+AGG 0.441225 6.1:+24803687 None:intergenic
CTAAAGTGTCAGCCGCCTAC+AGG 0.448914 6.1:-24804678 MS.gene054303:CDS
GGTGCATGCGGTGAGCAATA+TGG 0.455947 6.1:-24803780 MS.gene054303:CDS
TGGCAATGGGTACCGAGGAT+TGG 0.456031 6.1:-24804304 MS.gene054303:CDS
CTCTTGTTGTTATTGCATGA+TGG 0.456815 6.1:+24803651 None:intergenic
CTCAGAAATGCTTAGCAAGA+TGG 0.474202 6.1:-24804613 MS.gene054303:CDS
TTTGTGAAAGGTGGTTCCAT+TGG 0.482422 6.1:-24803728 MS.gene054303:CDS
GTGTGAATATCACCCCTGCT+AGG 0.500091 6.1:-24803701 MS.gene054303:CDS
TGGGTAATAATACTAATGTT+GGG 0.503347 6.1:-24804569 MS.gene054303:CDS
AATATGGCCCTGATAAATTC+TGG 0.503480 6.1:-24803764 MS.gene054303:CDS
AACATTTCTTGCCCAATCCT+CGG 0.505967 6.1:+24804292 None:intergenic
AACATTAGTATTATTACCCA+TGG 0.506224 6.1:+24804572 None:intergenic
TAAAGTGTCAGCCGCCTACA+GGG 0.522777 6.1:-24804677 MS.gene054303:CDS
CCCGACTCATTGTGTGGCAA+TGG 0.526130 6.1:-24804318 MS.gene054303:CDS
CTTTCCAACTCGAATTCCAC+GGG 0.526130 6.1:+24805248 None:intergenic
GACAAAATTTGCTAGGAACA+CGG 0.526762 6.1:+24805220 None:intergenic
TTGCAAATGCCTCTACACTT+CGG 0.528376 6.1:+24804818 None:intergenic
ATATGGGGAAGAGGCAAAAG+AGG 0.532508 6.1:-24804867 MS.gene054303:CDS
TGAATTTAGATATGGGGAAG+AGG 0.541078 6.1:-24804876 MS.gene054303:intron
ACAAAATTTGCTAGGAACAC+GGG 0.544351 6.1:+24805221 None:intergenic
CCGACTCATTGTGTGGCAAT+GGG 0.547349 6.1:-24804317 MS.gene054303:CDS
ACACGCAAAACCAGATGCCT+TGG 0.548018 6.1:+24804638 None:intergenic
CCATTGCCACACAATGAGTC+GGG 0.548885 6.1:+24804318 None:intergenic
AAATCCCGTGGAATTCGAGT+TGG 0.550349 6.1:-24805252 MS.gene054303:CDS
AACAAGAGAGCTCGCTCTTG+AGG 0.551378 6.1:-24803636 None:intergenic
GTTACCTAAAGACGAGGAGG+TGG 0.556937 6.1:-24803850 MS.gene054303:CDS
TGATATTCACACATTTCCAA+TGG 0.559228 6.1:+24803712 None:intergenic
TGTGAATATCACCCCTGCTA+GGG 0.567860 6.1:-24803700 MS.gene054303:CDS
CCCATTGCCACACAATGAGT+CGG 0.571139 6.1:+24804317 None:intergenic
CGATATGCTTAGCCCTAGCA+GGG 0.574696 6.1:+24803688 None:intergenic
TCTTTCCAACTCGAATTCCA+CGG 0.576672 6.1:+24805247 None:intergenic
TCTGTGACGTTTGTGAAAGG+TGG 0.583631 6.1:-24803737 MS.gene054303:CDS
ACCTGGTGACAAAATTTGCT+AGG 0.596109 6.1:+24805213 None:intergenic
GGCACTTGTTCGTATAGCCA+AGG 0.607034 6.1:-24804655 MS.gene054303:CDS
GTGTGTTGAATTTAGATATG+GGG 0.609714 6.1:-24804882 MS.gene054303:intron
GGAAGAATATGCTTTGGGAA+AGG 0.614050 6.1:-24804538 MS.gene054303:intron
AGAAAATCCAGAATTTATCA+GGG 0.616292 6.1:+24803757 None:intergenic
TGGATGTGCCCGAAGTGTAG+AGG 0.628364 6.1:-24804827 MS.gene054303:CDS
AAAGTGTCAGCCGCCTACAG+GGG 0.639872 6.1:-24804676 MS.gene054303:CDS
GGAGGTGGAAGAACTTTGTG+AGG 0.644067 6.1:-24803835 MS.gene054303:CDS
CGAACAAGTGCCCCTGTAGG+CGG 0.661590 6.1:+24804666 None:intergenic
TTGTGTGGCAATGGGTACCG+AGG 0.665786 6.1:-24804309 MS.gene054303:CDS
ATATTGCCCGACTCATTGTG+TGG 0.684429 6.1:-24804324 MS.gene054303:CDS
TTTGGAGTTACCTAAAGACG+AGG 0.685384 6.1:-24803856 MS.gene054303:CDS
GGAGTTACCTAAAGACGAGG+AGG 0.687422 6.1:-24803853 MS.gene054303:CDS
ATACGAACAAGTGCCCCTGT+AGG 0.687555 6.1:+24804663 None:intergenic
GATAACTCATGTGGTGCATG+CGG 0.701484 6.1:-24803792 MS.gene054303:CDS
GAACACGGAGATAACTCATG+TGG 0.715888 6.1:-24803801 MS.gene054303:CDS
GAGGAAGATGAAGATGAACA+CGG 0.725244 6.1:-24803816 MS.gene054303:CDS
GATATGCTTAGCCCTAGCAG+GGG 0.762022 6.1:+24803689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGTTTATTTTTTCACA+TGG - chr6.1:24803821-24803840 MS.gene054303:CDS 15.0%
!!! TAAAACATGTTTTATGATTT+TGG - chr6.1:24804152-24804171 MS.gene054303:intron 15.0%
!!! TTAAATTATTTTGAGTACAA+AGG - chr6.1:24803964-24803983 MS.gene054303:intron 15.0%
!! ATGACAACTACATAAATATA+GGG + chr6.1:24804418-24804437 None:intergenic 20.0%
!! TATGACAACTACATAAATAT+AGG + chr6.1:24804419-24804438 None:intergenic 20.0%
!! TTCAACTCACAAAATAAATT+GGG - chr6.1:24804675-24804694 MS.gene054303:CDS 20.0%
!!! TAGATTTTAACACATTGATT+GGG - chr6.1:24804903-24804922 MS.gene054303:intron 20.0%
!!! TTTTTATTTGATGCTGAATA+AGG - chr6.1:24804447-24804466 MS.gene054303:intron 20.0%
! AAAGCATATTCTTCCTTTAT+AGG + chr6.1:24804376-24804395 None:intergenic 25.0%
! AACATTAGTATTATTACCCA+TGG + chr6.1:24804350-24804369 None:intergenic 25.0%
! AGAAAATCCAGAATTTATCA+GGG + chr6.1:24805165-24805184 None:intergenic 25.0%
! ATAAAGGAAGAATATGCTTT+GGG - chr6.1:24804376-24804395 MS.gene054303:intron 25.0%
! ATCATTATCACCAATAACAA+TGG + chr6.1:24804707-24804726 None:intergenic 25.0%
! ATGGGTAATAATACTAATGT+TGG - chr6.1:24804349-24804368 MS.gene054303:intron 25.0%
! CTTCAACTCACAAAATAAAT+TGG - chr6.1:24804674-24804693 MS.gene054303:CDS 25.0%
! TATAAAGGAAGAATATGCTT+TGG - chr6.1:24804375-24804394 MS.gene054303:intron 25.0%
! TGGGTAATAATACTAATGTT+GGG - chr6.1:24804350-24804369 MS.gene054303:intron 25.0%
!! AAGTTGATCTATCTCTATAT+GGG + chr6.1:24804746-24804765 None:intergenic 25.0%
!! AGGTAAACCTTTTGAATAAT+TGG - chr6.1:24804072-24804091 MS.gene054303:intron 25.0%
!! CAAAAACCTTTATTTCTTGT+CGG + chr6.1:24803852-24803871 None:intergenic 25.0%
!! GTTAATACTTGTTGGATATA+TGG - chr6.1:24804950-24804969 MS.gene054303:intron 25.0%
!! GTTATTGGTGATAATGATAA+TGG - chr6.1:24804709-24804728 MS.gene054303:intron 25.0%
!! TACTTGATAATAGTGCTATA+AGG - chr6.1:24804770-24804789 MS.gene054303:intron 25.0%
!!! ATGTTTTATGATTTTGGTGT+TGG - chr6.1:24804158-24804177 MS.gene054303:intron 25.0%
!!! GTAGATTTTAACACATTGAT+TGG - chr6.1:24804902-24804921 MS.gene054303:intron 25.0%
ACGAAACATTGAAAATGTAC+TGG - chr6.1:24804835-24804854 MS.gene054303:CDS 30.0%
ACTCACAAAATAAATTGGGA+TGG - chr6.1:24804679-24804698 MS.gene054303:CDS 30.0%
CAGAAAATCCAGAATTTATC+AGG + chr6.1:24805166-24805185 None:intergenic 30.0%
CATCTAATATAAGCAGACTA+CGG - chr6.1:24805039-24805058 MS.gene054303:intron 30.0%
CGTGTGTTGAATTTAGATAT+GGG - chr6.1:24804036-24804055 MS.gene054303:intron 30.0%
GTGTGTTGAATTTAGATATG+GGG - chr6.1:24804037-24804056 MS.gene054303:intron 30.0%
TCGTGTGTTGAATTTAGATA+TGG - chr6.1:24804035-24804054 MS.gene054303:intron 30.0%
TGATATTCACACATTTCCAA+TGG + chr6.1:24805210-24805229 None:intergenic 30.0%
TGTGTATTAGATCTTAACGA+AGG - chr6.1:24804202-24804221 MS.gene054303:intron 30.0%
! GAAGTTGATCTATCTCTATA+TGG + chr6.1:24804747-24804766 None:intergenic 30.0%
!! AGTTCAATTTGTTGCTAACA+TGG - chr6.1:24803798-24803817 MS.gene054303:CDS 30.0%
!! CATATTTGTTATTATGCTGC+AGG - chr6.1:24804553-24804572 MS.gene054303:CDS 30.0%
!! TATTTTGTGAGTTGAAGACA+AGG + chr6.1:24804671-24804690 None:intergenic 30.0%
!! TTTTAACACATTGATTGGGA+AGG - chr6.1:24804907-24804926 MS.gene054303:intron 30.0%
AATATGGCCCTGATAAATTC+TGG - chr6.1:24805155-24805174 MS.gene054303:intron 35.0%
ACGACATCGTTAATACTTGT+TGG - chr6.1:24804942-24804961 MS.gene054303:intron 35.0%
CAAGAAACTAGAAATCAACC+TGG + chr6.1:24803726-24803745 None:intergenic 35.0%
CAAGATGGAAGCTGAAAAAT+TGG - chr6.1:24804321-24804340 MS.gene054303:CDS 35.0%
CATGCAAAAACCTGAGAAAA+AGG - chr6.1:24803878-24803897 MS.gene054303:intron 35.0%
GGCACATCCAATTATTCAAA+AGG + chr6.1:24804082-24804101 None:intergenic 35.0%
TACTAATGTTGGGCCTATAA+AGG - chr6.1:24804360-24804379 MS.gene054303:intron 35.0%
TGAATTTAGATATGGGGAAG+AGG - chr6.1:24804043-24804062 MS.gene054303:intron 35.0%
TTAACGAAGGTTAACCATGT+AGG - chr6.1:24804215-24804234 MS.gene054303:intron 35.0%
! AACAAGACTTCCTTTTTCTC+AGG + chr6.1:24803891-24803910 None:intergenic 35.0%
! AGCTGAAAAATTGGTTTCCA+TGG - chr6.1:24804330-24804349 MS.gene054303:CDS 35.0%
! ATTTTCAATGTTTCGTCCAG+AGG + chr6.1:24804831-24804850 None:intergenic 35.0%
! CTTCCTCATATTTTTCTCTC+TGG + chr6.1:24804796-24804815 None:intergenic 35.0%
! GAAGAAATTTTTCATCCCTC+TGG - chr6.1:24804812-24804831 MS.gene054303:CDS 35.0%
! GCTGAAAAATTGGTTTCCAT+GGG - chr6.1:24804331-24804350 MS.gene054303:CDS 35.0%
! TTTTCAATGTTTCGTCCAGA+GGG + chr6.1:24804830-24804849 None:intergenic 35.0%
! TTTTCGTGGGGAAGAAAAAT+TGG + chr6.1:24803648-24803667 None:intergenic 35.0%
! TTTTCTGTGACGTTTGTGAA+AGG - chr6.1:24805179-24805198 MS.gene054303:intron 35.0%
!! AAAGGAAGTCTTGTTTCTTG+AGG - chr6.1:24803896-24803915 MS.gene054303:intron 35.0%
!! ACAAAATTTGCTAGGAACAC+GGG + chr6.1:24803701-24803720 None:intergenic 35.0%
!! ATTTGTTATTATGCTGCAGG+AGG - chr6.1:24804556-24804575 MS.gene054303:CDS 35.0%
!! CTCTTGTTGTTATTGCATGA+TGG + chr6.1:24805271-24805290 None:intergenic 35.0%
!! GACAAAATTTGCTAGGAACA+CGG + chr6.1:24803702-24803721 None:intergenic 35.0%
AACATTTCTTGCCCAATCCT+CGG + chr6.1:24804630-24804649 None:intergenic 40.0%
AGGCCAGAGAGAAAAATATG+AGG - chr6.1:24804790-24804809 MS.gene054303:intron 40.0%
ATATAAGCAGACTACGGCTT+TGG - chr6.1:24805045-24805064 MS.gene054303:intron 40.0%
CTCAGAAATGCTTAGCAAGA+TGG - chr6.1:24804306-24804325 MS.gene054303:CDS 40.0%
GAGGAAGATGAAGATGAACA+CGG - chr6.1:24805103-24805122 MS.gene054303:intron 40.0%
TAGTGTGTGCATGTAAGTTG+TGG - chr6.1:24804127-24804146 MS.gene054303:intron 40.0%
TCTTTCCAACTCGAATTCCA+CGG + chr6.1:24803675-24803694 None:intergenic 40.0%
TGACACTTTAGTCTCCTACA+TGG + chr6.1:24804232-24804251 None:intergenic 40.0%
TTGCAAATGCCTCTACACTT+CGG + chr6.1:24804104-24804123 None:intergenic 40.0%
TTTGTGAAAGGTGGTTCCAT+TGG - chr6.1:24805191-24805210 MS.gene054303:intron 40.0%
! ACCTGGTGACAAAATTTGCT+AGG + chr6.1:24803709-24803728 None:intergenic 40.0%
! TCCTAGCAAATTTTGTCACC+AGG - chr6.1:24803705-24803724 MS.gene054303:CDS 40.0%
! TTTGGAGTTACCTAAAGACG+AGG - chr6.1:24805063-24805082 MS.gene054303:intron 40.0%
!! AGAATATGCTTTGGGAAAGG+TGG - chr6.1:24804384-24804403 MS.gene054303:intron 40.0%
!! GAAGTGCCGACAAGAAATAA+AGG - chr6.1:24803843-24803862 MS.gene054303:CDS 40.0%
!! GGAAGAATATGCTTTGGGAA+AGG - chr6.1:24804381-24804400 MS.gene054303:intron 40.0%
!!! AATTCCACGGGATTTTTTCG+TGG + chr6.1:24803662-24803681 None:intergenic 40.0%
!!! ACCTGTCTAAGAGGCATTTT+TGG + chr6.1:24803927-24803946 None:intergenic 40.0%
!!! ATTCCACGGGATTTTTTCGT+GGG + chr6.1:24803661-24803680 None:intergenic 40.0%
AAATCCCGTGGAATTCGAGT+TGG - chr6.1:24803667-24803686 MS.gene054303:CDS 45.0%
ATATGGGGAAGAGGCAAAAG+AGG - chr6.1:24804052-24804071 MS.gene054303:intron 45.0%
ATATTGCCCGACTCATTGTG+TGG - chr6.1:24804595-24804614 MS.gene054303:CDS 45.0%
CTTTCCAACTCGAATTCCAC+GGG + chr6.1:24803674-24803693 None:intergenic 45.0%
GAACACGGAGATAACTCATG+TGG - chr6.1:24805118-24805137 MS.gene054303:intron 45.0%
GATAACTCATGTGGTGCATG+CGG - chr6.1:24805127-24805146 MS.gene054303:intron 45.0%
GCCAAAAATGCCTCTTAGAC+AGG - chr6.1:24803923-24803942 MS.gene054303:intron 45.0%
TCTGTGACGTTTGTGAAAGG+TGG - chr6.1:24805182-24805201 MS.gene054303:intron 45.0%
TGCAAATGCCTCTACACTTC+GGG + chr6.1:24804103-24804122 None:intergenic 45.0%
TGGGATGGCACCATTGTTAT+TGG - chr6.1:24804694-24804713 MS.gene054303:intron 45.0%
TGTGAATATCACCCCTGCTA+GGG - chr6.1:24805219-24805238 MS.gene054303:CDS 45.0%
! GTGAGTTGAAGACAAGGACT+AGG + chr6.1:24804665-24804684 None:intergenic 45.0%
!!! TTCCACGGGATTTTTTCGTG+GGG + chr6.1:24803660-24803679 None:intergenic 45.0%
!!! AAATAATTTAAAATAAAAAG+TGG + chr6.1:24803955-24803974 None:intergenic 5.0%
!!! AATAATTTAAAATAAAAAGT+GGG + chr6.1:24803954-24803973 None:intergenic 5.0%
ACACGCAAAACCAGATGCCT+TGG + chr6.1:24804284-24804303 None:intergenic 50.0%
ATACGAACAAGTGCCCCTGT+AGG + chr6.1:24804259-24804278 None:intergenic 50.0%
CCATTGCCACACAATGAGTC+GGG + chr6.1:24804604-24804623 None:intergenic 50.0%
CCCATTGCCACACAATGAGT+CGG + chr6.1:24804605-24804624 None:intergenic 50.0%
CCGACTCATTGTGTGGCAAT+GGG - chr6.1:24804602-24804621 MS.gene054303:CDS 50.0%
CGATATGCTTAGCCCTAGCA+GGG + chr6.1:24805234-24805253 None:intergenic 50.0%
GATATGCTTAGCCCTAGCAG+GGG + chr6.1:24805233-24805252 None:intergenic 50.0%
GGAGGTGGAAGAACTTTGTG+AGG - chr6.1:24805084-24805103 MS.gene054303:intron 50.0%
GGAGTTACCTAAAGACGAGG+AGG - chr6.1:24805066-24805085 MS.gene054303:intron 50.0%
GGCACTTGTTCGTATAGCCA+AGG - chr6.1:24804264-24804283 MS.gene054303:intron 50.0%
GTGGGTCAAACCTGTCTAAG+AGG + chr6.1:24803936-24803955 None:intergenic 50.0%
GTGTGAATATCACCCCTGCT+AGG - chr6.1:24805218-24805237 MS.gene054303:CDS 50.0%
GTTACCTAAAGACGAGGAGG+TGG - chr6.1:24805069-24805088 MS.gene054303:intron 50.0%
TCGATATGCTTAGCCCTAGC+AGG + chr6.1:24805235-24805254 None:intergenic 50.0%
TCTTCCACCTCCTCGTCTTT+AGG + chr6.1:24805076-24805095 None:intergenic 50.0%
TTCCCCACGAAAAAATCCCG+TGG - chr6.1:24803655-24803674 MS.gene054303:CDS 50.0%
! GTTCGTATAGCCAAGGCATC+TGG - chr6.1:24804271-24804290 MS.gene054303:intron 50.0%
! TAAAGTGTCAGCCGCCTACA+GGG - chr6.1:24804242-24804261 MS.gene054303:intron 50.0%
CCCGACTCATTGTGTGGCAA+TGG - chr6.1:24804601-24804620 MS.gene054303:CDS 55.0%
GGTGCATGCGGTGAGCAATA+TGG - chr6.1:24805139-24805158 MS.gene054303:intron 55.0%
TGGATGTGCCCGAAGTGTAG+AGG - chr6.1:24804092-24804111 MS.gene054303:intron 55.0%
! AAAGTGTCAGCCGCCTACAG+GGG - chr6.1:24804243-24804262 MS.gene054303:intron 55.0%
! CTAAAGTGTCAGCCGCCTAC+AGG - chr6.1:24804241-24804260 MS.gene054303:intron 55.0%
! TTGTGTGGCAATGGGTACCG+AGG - chr6.1:24804610-24804629 MS.gene054303:CDS 55.0%
!! GGCAATGGGTACCGAGGATT+GGG - chr6.1:24804616-24804635 MS.gene054303:CDS 55.0%
!! TGGCAATGGGTACCGAGGAT+TGG - chr6.1:24804615-24804634 MS.gene054303:CDS 55.0%
CGAACAAGTGCCCCTGTAGG+CGG + chr6.1:24804256-24804275 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 24803638 24805303 24803638 ID=MS.gene054303
chr6.1 mRNA 24803638 24805303 24803638 ID=MS.gene054303.t1;Parent=MS.gene054303
chr6.1 exon 24805215 24805303 24805215 ID=MS.gene054303.t1.exon1;Parent=MS.gene054303.t1
chr6.1 CDS 24805215 24805303 24805215 ID=cds.MS.gene054303.t1;Parent=MS.gene054303.t1
chr6.1 exon 24804803 24804889 24804803 ID=MS.gene054303.t1.exon2;Parent=MS.gene054303.t1
chr6.1 CDS 24804803 24804889 24804803 ID=cds.MS.gene054303.t1;Parent=MS.gene054303.t1
chr6.1 exon 24804539 24804704 24804539 ID=MS.gene054303.t1.exon3;Parent=MS.gene054303.t1
chr6.1 CDS 24804539 24804704 24804539 ID=cds.MS.gene054303.t1;Parent=MS.gene054303.t1
chr6.1 exon 24804295 24804366 24804295 ID=MS.gene054303.t1.exon4;Parent=MS.gene054303.t1
chr6.1 CDS 24804295 24804366 24804295 ID=cds.MS.gene054303.t1;Parent=MS.gene054303.t1
chr6.1 exon 24804013 24804042 24804013 ID=MS.gene054303.t1.exon5;Parent=MS.gene054303.t1
chr6.1 CDS 24804013 24804042 24804013 ID=cds.MS.gene054303.t1;Parent=MS.gene054303.t1
chr6.1 exon 24803638 24803886 24803638 ID=MS.gene054303.t1.exon6;Parent=MS.gene054303.t1
chr6.1 CDS 24803638 24803886 24803638 ID=cds.MS.gene054303.t1;Parent=MS.gene054303.t1
Gene Sequence

>MS.gene054303

ATGAAATCCAATTTTTCTTCCCCACGAAAAAATCCCGTGGAATTCGAGTTGGAAAGAAAACCCGTGTTCCTAGCAAATTTTGTCACCAGGTTGATTTCTAGTTTCTTGAGATTAATTTGACAAATTAAATATTGCAGATCTTTTATTTTTTAATTTAAAAAGTTCAATTTGTTGCTAACATGGATATTGTTTATTTTTTCACATGGAAGTGCCGACAAGAAATAAAGGTTTTTGCTGCTGCATGCAAAAACCTGAGAAAAAGGAAGTCTTGTTTCTTGAGGATTTGCCAAAAATGCCTCTTAGACAGGTTTGACCCACTTTTTATTTTAAATTATTTTGAGTACAAAGGTACAAGAACATATTGTATGTATGTTTTTTTTTTGTATGCTAACGATTATCGTGTGTTGAATTTAGATATGGGGAAGAGGCAAAAGAGGTAAACCTTTTGAATAATTGGATGTGCCCGAAGTGTAGAGGCATTTGCAACTGTAGTGTGTGCATGTAAGTTGTGGTTTAAAACATGTTTTATGATTTTGGTGTTGGAGTTTTCATTTTGTAACATTTTGTGTATTAGATCTTAACGAAGGTTAACCATGTAGGAGACTAAAGTGTCAGCCGCCTACAGGGGCACTTGTTCGTATAGCCAAGGCATCTGGTTTTGCGTGTGTCTCAGAAATGCTTAGCAAGATGGAAGCTGAAAAATTGGTTTCCATGGGTAATAATACTAATGTTGGGCCTATAAAGGAAGAATATGCTTTGGGAAAGGTGGTTTTCTCTCCCTATATTTATGTAGTTGTCATAATAAGTTTTTTTTATTTGATGCTGAATAAGGCTCTTTTTATTTATTCAATTTCAAATAATGATAAAAAATGTAAGAGTGTGCTGATTATCATTGTATTTTAAAGATTTGAATTTCATATTTGTTATTATGCTGCAGGAGGTTTTAGTAGAAGAGAAATATTGCCCGACTCATTGTGTGGCAATGGGTACCGAGGATTGGGCAAGAAATGTTTTATTTTCTGATCCTAGTCCTTGTCTTCAACTCACAAAATAAATTGGGATGGCACCATTGTTATTGGTGATAATGATAATGGTAGACTGAATTCCCATATAGAGATAGATCAACTTCAAATACTTGATAATAGTGCTATAAGGCCAGAGAGAAAAATATGAGGAAGAAATTTTTCATCCCTCTGGACGAAACATTGAAAATGTACTGGACATTGAATTTTAACGAGAAGATGCTGCGAGTGAAATGCAGTTTGTAGATTTTAACACATTGATTGGGAAGGTATGCGTTTTCAACGACATCGTTAATACTTGTTGGATATATGGTAGTTATGTGTTTATAATTTTGAATTTTCTCTTAAGTCTTGTTTGATTTATTTTAACATAATGATGCATCTAATATAAGCAGACTACGGCTTTGGAGTTACCTAAAGACGAGGAGGTGGAAGAACTTTGTGAGGAAGATGAAGATGAACACGGAGATAACTCATGTGGTGCATGCGGTGAGCAATATGGCCCTGATAAATTCTGGATTTTCTGTGACGTTTGTGAAAGGTGGTTCCATTGGAAATGTGTGAATATCACCCCTGCTAGGGCTAAGCATATCGAGATATACAAGTGTCCATCATGCAATAACAACAAGAGAGCTCGCTCTTGA
Protein sequence

>MS.gene054303.t1

MKSNFSSPRKNPVEFELERKPVFLANFVTRYGEEAKEVNLLNNWMCPKCRGICNCSVCMRLKCQPPTGALVRIAKASGFACVSEMLSKMEAEKLVSMGNNTNVGPIKEEYALGKEVLVEEKYCPTHCVAMGTEDWARNFVDFNTLIGKTTALELPKDEEVEELCEEDEDEHGDNSCGACGEQYGPDKFWIFCDVCERWFHWKCVNITPARAKHIEIYKCPSCNNNKRARS