AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054310.t1 MTR_6g043060 71.951 328 63 3 1 299 1 328 1.13e-168 471
MS.gene054310.t1 MTR_8g083100 76.259 278 23 2 23 257 23 300 1.00e-146 421
MS.gene054310.t1 MTR_8g083100 86.364 44 6 0 257 300 414 457 5.75e-18 84.3
MS.gene054310.t1 MTR_2g100680 59.136 301 77 4 1 257 12 310 1.65e-113 335
MS.gene054310.t1 MTR_6g044340 64.453 256 68 2 68 300 8 263 1.31e-110 321
MS.gene054310.t1 MTR_2g100670 53.746 307 117 8 1 298 14 304 1.01e-97 290
MS.gene054310.t1 MTR_2g100670 53.746 307 117 8 1 298 122 412 1.85e-95 288
MS.gene054310.t1 MTR_5g029680 49.763 211 92 4 22 218 32 242 1.88e-63 208
MS.gene054310.t1 MTR_8g087540 48.309 207 97 3 15 216 5 206 1.23e-59 196
MS.gene054310.t1 MTR_6g044430 48.810 252 42 6 100 300 14 229 3.03e-58 186
MS.gene054310.t1 MTR_6g044440 57.542 179 24 3 174 300 1 179 1.74e-56 180
MS.gene054310.t1 MTR_4g077970 44.019 209 105 3 20 216 10 218 2.69e-54 184
MS.gene054310.t1 MTR_1g102860 42.601 223 111 6 7 215 20 239 1.37e-50 170
MS.gene054310.t1 MTR_7g095680 45.192 208 102 5 19 215 46 252 6.42e-50 169
MS.gene054310.t1 MTR_3g104550 42.647 204 111 3 19 217 43 245 1.02e-49 169
MS.gene054310.t1 MTR_1g061170 38.034 234 130 4 20 243 47 275 4.46e-47 164
MS.gene054310.t1 MTR_1g071360 39.819 221 113 4 22 233 32 241 6.27e-46 158
MS.gene054310.t1 MTR_1g071360 39.819 221 113 4 22 233 29 238 8.68e-46 159
MS.gene054310.t1 MTR_3g101870 65.686 102 35 0 12 113 14 115 4.92e-45 157
MS.gene054310.t1 MTR_8g105780 47.179 195 90 6 20 201 20 214 2.34e-44 155
MS.gene054310.t1 MTR_5g017470 62.264 106 40 0 17 122 4 109 7.17e-43 149
MS.gene054310.t1 MTR_6g086805 40.686 204 114 2 20 219 9 209 3.66e-42 148
MS.gene054310.t1 MTR_5g089170 67.742 93 30 0 21 113 24 116 5.11e-42 145
MS.gene054310.t1 MTR_5g010680 58.333 108 45 0 6 113 8 115 2.04e-41 147
MS.gene054310.t1 MTR_2g017890 57.407 108 46 0 12 119 5 112 1.61e-40 145
MS.gene054310.t1 MTR_6g044350 55.479 146 32 3 174 286 1 146 4.63e-40 137
MS.gene054310.t1 MTR_0020s0020 63.441 93 34 0 21 113 32 124 1.24e-38 139
MS.gene054310.t1 MTR_7g091370 52.212 113 54 0 1 113 1 113 1.66e-38 136
MS.gene054310.t1 MTR_1g100777 61.053 95 37 0 21 115 17 111 7.52e-38 136
MS.gene054310.t1 MTR_4g088900 56.701 97 38 1 21 113 32 128 3.19e-34 124
MS.gene054310.t1 MTR_6g044510 66.197 71 16 1 238 300 18 88 4.47e-24 94.0
MS.gene054310.t1 MTR_5g047190 46.392 97 45 2 30 119 1 97 2.31e-22 89.7
MS.gene054310.t1 MTR_4g045757 65.517 58 20 0 22 79 14 71 5.41e-21 85.5
MS.gene054310.t1 MTR_1g061170 28.497 193 115 6 61 243 1 180 2.08e-13 70.1
MS.gene054310.t1 MTR_6g044500 46.341 82 19 3 205 262 1 81 3.50e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054310.t1 AT4G13980 53.755 253 107 3 1 243 1 253 4.48e-87 268
MS.gene054310.t1 AT4G17750 47.685 216 92 4 22 216 52 267 3.10e-59 197
MS.gene054310.t1 AT5G16820 48.341 211 94 5 20 216 25 234 2.17e-58 194
MS.gene054310.t1 AT5G16820 48.341 211 94 5 20 216 25 234 2.17e-58 194
MS.gene054310.t1 AT3G02990 42.918 233 120 4 8 228 9 240 3.40e-58 194
MS.gene054310.t1 AT1G32330 45.532 235 109 5 1 216 16 250 8.15e-58 193
MS.gene054310.t1 AT1G32330 45.532 235 109 5 1 216 16 250 9.16e-58 193
MS.gene054310.t1 AT5G45710 38.413 315 156 9 14 299 5 310 7.86e-55 181
MS.gene054310.t1 AT5G45710 38.413 315 156 9 14 299 5 310 7.86e-55 181
MS.gene054310.t1 AT4G18880 48.131 214 95 4 16 220 9 215 3.81e-52 176
MS.gene054310.t1 AT2G26150 41.892 222 121 4 19 232 41 262 3.01e-50 169
MS.gene054310.t1 AT2G26150 41.892 222 121 4 19 232 41 262 3.01e-50 169
MS.gene054310.t1 AT3G22830 39.815 216 117 3 19 221 58 273 2.67e-47 163
MS.gene054310.t1 AT3G51910 41.232 211 107 5 22 226 29 228 6.13e-47 159
MS.gene054310.t1 AT5G03720 42.079 202 109 3 20 213 53 254 5.95e-46 160
MS.gene054310.t1 AT5G03720 42.079 202 109 3 20 213 53 254 5.95e-46 160
MS.gene054310.t1 AT1G46264 61.607 112 33 1 21 122 33 144 1.85e-44 154
MS.gene054310.t1 AT3G24520 45.665 173 74 3 20 191 15 168 2.04e-44 154
MS.gene054310.t1 AT1G67970 45.312 192 92 5 20 201 17 205 4.93e-44 154
MS.gene054310.t1 AT5G43840 41.176 187 98 3 21 205 18 194 6.22e-42 146
MS.gene054310.t1 AT5G54070 42.623 183 99 2 20 201 69 246 5.00e-41 145
MS.gene054310.t1 AT3G63350 31.449 283 160 8 19 297 25 277 1.49e-39 140
MS.gene054310.t1 AT4G11660 62.000 100 38 0 14 113 51 150 4.64e-39 141
MS.gene054310.t1 AT5G62020 51.261 119 57 1 1 118 1 119 2.63e-38 137
MS.gene054310.t1 AT4G36990 44.944 178 63 4 8 153 2 176 4.44e-38 136
MS.gene054310.t1 AT2G41690 53.043 115 54 0 22 136 40 154 6.36e-38 135
MS.gene054310.t1 AT4G18870 47.727 88 46 0 22 109 146 233 4.39e-23 96.7
MS.gene054310.t1 AT4G18870 46.875 96 50 1 14 109 5 99 8.50e-23 95.9
MS.gene054310.t1 AT1G77570 43.478 92 48 3 19 106 22 113 4.31e-17 77.0
MS.gene054310.t1 AT2G26150 31.527 203 124 6 40 232 10 207 1.05e-15 76.3
MS.gene054310.t1 AT2G26150 31.527 203 124 6 40 232 10 207 1.05e-15 76.3
MS.gene054310.t1 AT4G19630 35.052 97 60 1 19 112 8 104 2.02e-13 66.6
MS.gene054310.t1 AT5G45710 30.045 223 118 10 106 299 1 214 1.11e-12 67.0
MS.gene054310.t1 AT5G45710 30.045 223 118 10 106 299 1 214 1.11e-12 67.0

Find 70 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.1:+24627176 None:intergenic
ATAATTATAGCTTAGGAGTT+TGG 0.257010 6.1:+24627112 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.330894 6.1:-24626958 MS.gene054310:CDS
CCACAGATGAGATCATTTCT+TGG 0.343190 6.1:-24628808 MS.gene054310:CDS
ACGGAGTGAATGATGTGTTT+TGG 0.356521 6.1:-24626737 MS.gene054310:CDS
CTTCTTTGAGAAGGCTCTAC+AGG 0.360916 6.1:-24627009 MS.gene054310:CDS
ATAACAAAAGCTTCATCGTT+TGG 0.362747 6.1:-24628778 MS.gene054310:CDS
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.1:+24628749 None:intergenic
ACGTTACCTGAAGCCTCCTT+TGG 0.398346 6.1:+24626783 None:intergenic
TAAGAAAAGGCGATTGTCTC+AGG 0.414889 6.1:-24626925 MS.gene054310:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417714 6.1:+24626888 None:intergenic
AGCTTAGGAGTTTGGATTGA+AGG 0.419735 6.1:+24627120 None:intergenic
TTGCTGTGTTTGAAATATGT+TGG 0.421946 6.1:+24628725 None:intergenic
TGCTGTGTTTGAAATATGTT+GGG 0.444516 6.1:+24628726 None:intergenic
TATCAAGATAATTATAGCTT+AGG 0.451761 6.1:+24627105 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.461564 6.1:-24626938 MS.gene054310:CDS
TCTGCTTCCGTCGGCAGCAG+TGG 0.466428 6.1:+24628883 None:intergenic
GAAGCCTCCTTTGGATCAGC+AGG 0.467229 6.1:+24626792 None:intergenic
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.1:-24627213 MS.gene054310:CDS
GCCGAGCAGCTGCTTCGACT+TGG 0.471786 6.1:+24626760 None:intergenic
GCTGATCCAAAGGAGGCTTC+AGG 0.472715 6.1:-24626789 MS.gene054310:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.473073 6.1:-24626889 MS.gene054310:CDS
GAAAGCAGATCCTGATCGTT+GGG 0.475772 6.1:-24627306 MS.gene054310:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.1:+24627296 None:intergenic
GCTTAGGAGTTTGGATTGAA+GGG 0.480417 6.1:+24627121 None:intergenic
ATTATAAGTTTCCAAATCCA+TGG 0.481800 6.1:+24626947 None:intergenic
TTTGCAAAACTTCTTTGAGA+AGG 0.487416 6.1:-24627018 MS.gene054310:CDS
CTTTCTGAAGGAGAACTGAC+AGG 0.491976 6.1:-24626834 MS.gene054310:CDS
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.1:-24627180 MS.gene054310:CDS
TGATACAGAAAAGCTTCAGC+TGG 0.497298 6.1:-24627087 MS.gene054310:CDS
CGACGGAAGCAGAGAAGGTA+TGG 0.499479 6.1:-24628873 MS.gene054310:CDS
ATTGAGCTGACGGATGAAGC+TGG 0.506271 6.1:+24628697 None:intergenic
TTCTCTCAGAATCTTTCTGA+AGG 0.510971 6.1:-24626846 MS.gene054310:CDS
TTCCCGCAAAATCGAATCCA+TGG 0.512391 6.1:-24626964 MS.gene054310:CDS
TCAGCGGCAATTGGATGGCA+TGG 0.513464 6.1:-24627057 MS.gene054310:CDS
TCATATGTCTTCTGAAGAAA+CGG 0.516273 6.1:+24628848 None:intergenic
AACTGACCCTGCTGATCCAA+AGG 0.523974 6.1:-24626799 MS.gene054310:CDS
GAGAGAAAACATTGCTAGGA+AGG 0.540423 6.1:+24626862 None:intergenic
AACAGCATGGACTTTCAGTA+AGG 0.541453 6.1:+24626706 None:intergenic
GGAAAGCAGATCCTGATCGT+TGG 0.545857 6.1:-24627307 MS.gene054310:CDS
GTCGAAGCAGCTGCTCGGCA+CGG 0.548207 6.1:-24626756 MS.gene054310:CDS
TCCAAGTCGAAGCAGCTGCT+CGG 0.549998 6.1:-24626761 MS.gene054310:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 6.1:+24627213 None:intergenic
AAGGTCGACCAAGCTACCTT+CGG 0.554405 6.1:+24626881 None:intergenic
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.1:-24627212 MS.gene054310:CDS
TTCTGCTGTAGATCCAGAAA+GGG 0.565003 6.1:-24627189 MS.gene054310:CDS
AGAAATGATCTCATCTGTGG+TGG 0.567159 6.1:+24628811 None:intergenic
GTTCTGCTGTAGATCCAGAA+AGG 0.569845 6.1:-24627190 MS.gene054310:CDS
TTCTGAGAGAAAACATTGCT+AGG 0.570976 6.1:+24626858 None:intergenic
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.1:+24627228 None:intergenic
GCTGCCGACGGAAGCAGAGA+AGG 0.581055 6.1:-24628878 MS.gene054310:CDS
CACATGCAGCCTGTTGCCGA+AGG 0.596050 6.1:-24626897 MS.gene054310:CDS
TTACATAGGTATTGAGCTGA+CGG 0.598207 6.1:+24628687 None:intergenic
AATTGGATGGCATGGAGAAG+AGG 0.602743 6.1:-24627049 MS.gene054310:CDS
TCATCAGCCACTGCTGCCGA+CGG 0.606067 6.1:-24628890 MS.gene054310:CDS
TCTGGATCTACAGCAGAACC+CGG 0.614712 6.1:+24627194 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.1:+24627218 None:intergenic
TCTTCATTGTCTGAACAGCA+TGG 0.622573 6.1:+24626693 None:intergenic
CATACCTTCTCTGCTTCCGT+CGG 0.623107 6.1:+24628874 None:intergenic
GAAATGATCTCATCTGTGGT+GGG 0.624254 6.1:+24628812 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.1:+24628752 None:intergenic
ATGCTGTTCAGACAATGAAG+AGG 0.637659 6.1:-24626691 MS.gene054310:CDS
AAGCCTCCTTTGGATCAGCA+GGG 0.654796 6.1:+24626793 None:intergenic
TTTCTGAAGGAGAACTGACA+GGG 0.656485 6.1:-24626833 MS.gene054310:CDS
CCAAGAAATGATCTCATCTG+TGG 0.658293 6.1:+24628808 None:intergenic
TGACCCTGCTGATCCAAAGG+AGG 0.659931 6.1:-24626796 MS.gene054310:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.1:+24628753 None:intergenic
TCTTCAGAAGACATATGACA+TGG 0.665030 6.1:-24628843 MS.gene054310:CDS
GCAGTGGCTGATGATGATTG+TGG 0.706595 6.1:+24628899 None:intergenic
GGATCTACAGCAGAACCCGG+AGG 0.744225 6.1:+24627197 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTCTTGTAAAAATTTAA+TGG - chr6.1:24628123-24628142 MS.gene054310:intron 10.0%
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.1:24628314-24628333 None:intergenic 10.0%
!! ACTACTTATCATATTTATAT+AGG + chr6.1:24627591-24627610 None:intergenic 15.0%
!!! AAGTATGTTTTAATTTGTTA+TGG - chr6.1:24628226-24628245 MS.gene054310:intron 15.0%
!! AATGGGAAAATTTAACATTT+AGG + chr6.1:24627883-24627902 None:intergenic 20.0%
!! AGGATTAAACAATAAAAATC+AGG + chr6.1:24627922-24627941 None:intergenic 20.0%
!! AGGTAATATTTGTATAACTA+TGG + chr6.1:24627815-24627834 None:intergenic 20.0%
!! ATACTAAATTATGTCATTGT+CGG + chr6.1:24627316-24627335 None:intergenic 20.0%
!! ATGGGAAAATTTAACATTTA+GGG + chr6.1:24627882-24627901 None:intergenic 20.0%
!! ATGTGAAAGATTTGAAAATA+AGG + chr6.1:24627835-24627854 None:intergenic 20.0%
!! ATTATTTCATTGAGTTTAGT+TGG - chr6.1:24627162-24627181 MS.gene054310:CDS 20.0%
!! GGATTAAACAATAAAAATCA+GGG + chr6.1:24627921-24627940 None:intergenic 20.0%
!! GTATTCTTGTAAAGATTTAA+TGG - chr6.1:24628145-24628164 MS.gene054310:intron 20.0%
!! TATCAAGATAATTATAGCTT+AGG + chr6.1:24628486-24628505 None:intergenic 20.0%
!! TGATTAGTAAGATAAGAATT+AGG - chr6.1:24627122-24627141 MS.gene054310:CDS 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.1:24628650-24628669 MS.gene054310:intron 20.0%
!! TTATCATATTTATATAGGTC+AGG + chr6.1:24627586-24627605 None:intergenic 20.0%
!! TTTAGTATAATCATATGTGT+TGG - chr6.1:24627328-24627347 MS.gene054310:intron 20.0%
!!! ACTATTTATCATGTTTCTAT+AGG - chr6.1:24627727-24627746 MS.gene054310:intron 20.0%
!!! ATTTATGTGTGCTTTTTATT+AGG - chr6.1:24628252-24628271 MS.gene054310:intron 20.0%
!!! CTATTTATCATGTTTCTATA+GGG - chr6.1:24627728-24627747 MS.gene054310:intron 20.0%
!!! TTATTTTCAAATCTTTCACA+TGG - chr6.1:24627834-24627853 MS.gene054310:intron 20.0%
!!! TTTATGTGTGCTTTTTATTA+GGG - chr6.1:24628253-24628272 MS.gene054310:intron 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.1:24627016-24627035 MS.gene054310:CDS 20.0%
! AAATAAGTTTGCAGTTCTTA+TGG - chr6.1:24628178-24628197 MS.gene054310:intron 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.1:24628034-24628053 MS.gene054310:intron 25.0%
! ATAATTATAGCTTAGGAGTT+TGG + chr6.1:24628479-24628498 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.1:24627542-24627561 None:intergenic 25.0%
! ATTACACACATAAAAACTTC+AGG + chr6.1:24628098-24628117 None:intergenic 25.0%
! ATTAGGTACAACTTTAGATT+TGG - chr6.1:24627139-24627158 MS.gene054310:CDS 25.0%
! ATTATAAGTTTCCAAATCCA+TGG + chr6.1:24628644-24628663 None:intergenic 25.0%
!! AAGAATATTTCTACATCATC+TGG - chr6.1:24627479-24627498 MS.gene054310:intron 25.0%
AAATTAAGACATACGAAGCA+AGG + chr6.1:24627396-24627415 None:intergenic 30.0%
AACAATAAAAATCAGGGTGT+TGG + chr6.1:24627915-24627934 None:intergenic 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.1:24628330-24628349 MS.gene054310:intron 30.0%
ATAACAAAAGCTTCATCGTT+TGG - chr6.1:24626810-24626829 MS.gene054310:CDS 30.0%
ATGGCAATGAGAAAAAACTA+AGG - chr6.1:24628053-24628072 MS.gene054310:intron 30.0%
CTTCATCGAATTTCAATTAG+TGG - chr6.1:24627050-24627069 MS.gene054310:CDS 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.1:24627553-24627572 MS.gene054310:intron 30.0%
! ATAATCATATGTGTTGGTGT+CGG - chr6.1:24627334-24627353 MS.gene054310:intron 30.0%
! ATGACTAACATGGGAAATTT+TGG + chr6.1:24627782-24627801 None:intergenic 30.0%
! GCTTCGTATGTCTTAATTTT+CGG - chr6.1:24627397-24627416 MS.gene054310:intron 30.0%
! TAGCATGAATTGACTTACAT+AGG + chr6.1:24626918-24626937 None:intergenic 30.0%
! TATCATGTTTCTATAGGGTA+GGG - chr6.1:24627733-24627752 MS.gene054310:intron 30.0%
! TCATATGTCTTCTGAAGAAA+CGG + chr6.1:24626743-24626762 None:intergenic 30.0%
! TGACTAACATGGGAAATTTT+GGG + chr6.1:24627781-24627800 None:intergenic 30.0%
! TGCTGTGTTTGAAATATGTT+GGG + chr6.1:24626865-24626884 None:intergenic 30.0%
! TTATCATGTTTCTATAGGGT+AGG - chr6.1:24627732-24627751 MS.gene054310:intron 30.0%
! TTGCTGTGTTTGAAATATGT+TGG + chr6.1:24626866-24626885 None:intergenic 30.0%
! TTTGCAAAACTTCTTTGAGA+AGG - chr6.1:24628570-24628589 MS.gene054310:intron 30.0%
!! GTGCTTTTTATTAGGGATTT+CGG - chr6.1:24628260-24628279 MS.gene054310:intron 30.0%
!! TATGTCTTAATTTTCGGTGT+GGG - chr6.1:24627403-24627422 MS.gene054310:intron 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr6.1:24628086-24628105 None:intergenic 35.0%
AGACACATCATGACTAACAT+GGG + chr6.1:24627791-24627810 None:intergenic 35.0%
ATATAGGTCAGGAACTAAAC+CGG + chr6.1:24627575-24627594 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr6.1:24628630-24628649 MS.gene054310:intron 35.0%
GACATGAGAATGTTGAAAGA+TGG - chr6.1:24627201-24627220 MS.gene054310:CDS 35.0%
TCTTCAGAAGACATATGACA+TGG - chr6.1:24626745-24626764 MS.gene054310:CDS 35.0%
TGACGCATTTCATATACTTC+AGG + chr6.1:24627615-24627634 None:intergenic 35.0%
TTCTCTCAGAATCTTTCTGA+AGG - chr6.1:24628742-24628761 MS.gene054310:CDS 35.0%
TTTCTACATCATCTGGATCT+TGG - chr6.1:24627486-24627505 MS.gene054310:intron 35.0%
! AATCCATGGATTCGATTTTG+CGG + chr6.1:24628630-24628649 None:intergenic 35.0%
! GTAGGGACTAAATTTGAGAT+AGG - chr6.1:24627750-24627769 MS.gene054310:intron 35.0%
! GTATGTCTTAATTTTCGGTG+TGG - chr6.1:24627402-24627421 MS.gene054310:intron 35.0%
! TTCTGAGAGAAAACATTGCT+AGG + chr6.1:24628733-24628752 None:intergenic 35.0%
!! TTACATAGGTATTGAGCTGA+CGG + chr6.1:24626904-24626923 None:intergenic 35.0%
AACAGCATGGACTTTCAGTA+AGG + chr6.1:24628885-24628904 None:intergenic 40.0%
AGAAATGATCTCATCTGTGG+TGG + chr6.1:24626780-24626799 None:intergenic 40.0%
AGCTTAGGAGTTTGGATTGA+AGG + chr6.1:24628471-24628490 None:intergenic 40.0%
ATGCTGTTCAGACAATGAAG+AGG - chr6.1:24628897-24628916 MS.gene054310:CDS 40.0%
CAGACACATCATGACTAACA+TGG + chr6.1:24627792-24627811 None:intergenic 40.0%
CCAAGAAATGATCTCATCTG+TGG + chr6.1:24626783-24626802 None:intergenic 40.0%
CCACAGATGAGATCATTTCT+TGG - chr6.1:24626780-24626799 MS.gene054310:CDS 40.0%
CTACGATGTAGAAGAGAAGT+AGG + chr6.1:24627942-24627961 None:intergenic 40.0%
CTTTCACATGGCAAACCTAT+GGG - chr6.1:24627846-24627865 MS.gene054310:intron 40.0%
GAAATGATCTCATCTGTGGT+GGG + chr6.1:24626779-24626798 None:intergenic 40.0%
GAGAGAAAACATTGCTAGGA+AGG + chr6.1:24628729-24628748 None:intergenic 40.0%
GCTTAGGAGTTTGGATTGAA+GGG + chr6.1:24628470-24628489 None:intergenic 40.0%
TAAGAAAAGGCGATTGTCTC+AGG - chr6.1:24628663-24628682 MS.gene054310:intron 40.0%
TCTTCATTGTCTGAACAGCA+TGG + chr6.1:24628898-24628917 None:intergenic 40.0%
TCTTTCACATGGCAAACCTA+TGG - chr6.1:24627845-24627864 MS.gene054310:intron 40.0%
TGATACAGAAAAGCTTCAGC+TGG - chr6.1:24628501-24628520 MS.gene054310:intron 40.0%
TTCTGCTGTAGATCCAGAAA+GGG - chr6.1:24628399-24628418 MS.gene054310:intron 40.0%
! ACGGAGTGAATGATGTGTTT+TGG - chr6.1:24628851-24628870 MS.gene054310:CDS 40.0%
! ATCCATGGATTCGATTTTGC+GGG + chr6.1:24628629-24628648 None:intergenic 40.0%
! CGGAGTGAATGATGTGTTTT+GGG - chr6.1:24628852-24628871 MS.gene054310:CDS 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr6.1:24627428-24627447 MS.gene054310:intron 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr6.1:24628515-24628534 MS.gene054310:intron 40.0%
! TTTCTGAAGGAGAACTGACA+GGG - chr6.1:24628755-24628774 MS.gene054310:CDS 40.0%
!! GGTGTTGGTATGCACTTAAT+GGG + chr6.1:24627900-24627919 None:intergenic 40.0%
AATTGGATGGCATGGAGAAG+AGG - chr6.1:24628539-24628558 MS.gene054310:intron 45.0%
ACTTCAGGAAGCAAATCTGG+TGG + chr6.1:24628083-24628102 None:intergenic 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.1:24626842-24626861 None:intergenic 45.0%
CGTAGACATCTCAAGCATCT+AGG - chr6.1:24627957-24627976 MS.gene054310:intron 45.0%
GAAAGCAGATCCTGATCGTT+GGG - chr6.1:24628282-24628301 MS.gene054310:intron 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.1:24628363-24628382 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.1:24628373-24628392 None:intergenic 45.0%
GTTCTGCTGTAGATCCAGAA+AGG - chr6.1:24628398-24628417 MS.gene054310:intron 45.0%
TAGGGTTCCAAAACACCCAT+AGG + chr6.1:24627864-24627883 None:intergenic 45.0%
TTCCCGCAAAATCGAATCCA+TGG - chr6.1:24628624-24628643 MS.gene054310:intron 45.0%
! CTTCTTTGAGAAGGCTCTAC+AGG - chr6.1:24628579-24628598 MS.gene054310:intron 45.0%
! CTTTCTGAAGGAGAACTGAC+AGG - chr6.1:24628754-24628773 MS.gene054310:CDS 45.0%
! GATTTTCAGCGGCAATTGGA+TGG - chr6.1:24628526-24628545 MS.gene054310:intron 45.0%
! GGAAGATTTTCAGCGGCAAT+TGG - chr6.1:24628522-24628541 MS.gene054310:intron 45.0%
! TGGCAAACCTATGGGTGTTT+TGG - chr6.1:24627854-24627873 MS.gene054310:intron 45.0%
!! GGGTGTTGGTATGCACTTAA+TGG + chr6.1:24627901-24627920 None:intergenic 45.0%
AACTGACCCTGCTGATCCAA+AGG - chr6.1:24628789-24628808 MS.gene054310:CDS 50.0%
AAGCCTCCTTTGGATCAGCA+GGG + chr6.1:24628798-24628817 None:intergenic 50.0%
AAGGTCGACCAAGCTACCTT+CGG + chr6.1:24628710-24628729 None:intergenic 50.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr6.1:24628808-24628827 None:intergenic 50.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.1:24626839-24626858 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.1:24628408-24628427 MS.gene054310:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.1:24628376-24628395 MS.gene054310:intron 50.0%
CAGGAAGCAAATCTGGTGGT+GGG + chr6.1:24628079-24628098 None:intergenic 50.0%
CATACCTTCTCTGCTTCCGT+CGG + chr6.1:24626717-24626736 None:intergenic 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.1:24628375-24628394 MS.gene054310:intron 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.1:24626838-24626857 None:intergenic 50.0%
GGAAAGCAGATCCTGATCGT+TGG - chr6.1:24628281-24628300 MS.gene054310:intron 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.1:24627419-24627438 MS.gene054310:intron 50.0%
TACGAAGCAAGGACACTCCT+CGG + chr6.1:24627385-24627404 None:intergenic 50.0%
TCAGGAAGCAAATCTGGTGG+TGG + chr6.1:24628080-24628099 None:intergenic 50.0%
TCTGGATCTACAGCAGAACC+CGG + chr6.1:24628397-24628416 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.1:24628415-24628434 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.1:24628295-24628314 None:intergenic 50.0%
! ATTGAGCTGACGGATGAAGC+TGG + chr6.1:24626894-24626913 None:intergenic 50.0%
! GCAGTGGCTGATGATGATTG+TGG + chr6.1:24626692-24626711 None:intergenic 50.0%
! TTCGGTGTGGGTGTGTGAAT+TGG - chr6.1:24627415-24627434 MS.gene054310:intron 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.1:24628703-24628722 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.1:24628378-24628397 None:intergenic 55.0%
CGACGGAAGCAGAGAAGGTA+TGG - chr6.1:24626715-24626734 MS.gene054310:CDS 55.0%
GAAGCCTCCTTTGGATCAGC+AGG + chr6.1:24628799-24628818 None:intergenic 55.0%
GATTAGGTGCGTCCTGGTGT+CGG + chr6.1:24627363-24627382 None:intergenic 55.0%
GCAAGGACACTCCTCGGATT+AGG + chr6.1:24627379-24627398 None:intergenic 55.0%
GCTGATCCAAAGGAGGCTTC+AGG - chr6.1:24628799-24628818 MS.gene054310:CDS 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.1:24627418-24627437 MS.gene054310:intron 55.0%
TCAGCGGCAATTGGATGGCA+TGG - chr6.1:24628531-24628550 MS.gene054310:intron 55.0%
TCCAAGTCGAAGCAGCTGCT+CGG - chr6.1:24628827-24628846 MS.gene054310:CDS 55.0%
TGACCCTGCTGATCCAAAGG+AGG - chr6.1:24628792-24628811 MS.gene054310:CDS 55.0%
ACCAGGACGCACCTAATCCG+AGG - chr6.1:24627365-24627384 MS.gene054310:intron 60.0%
CACATGCAGCCTGTTGCCGA+AGG - chr6.1:24628691-24628710 MS.gene054310:CDS 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.1:24628699-24628718 MS.gene054310:CDS 60.0%
GGATCTACAGCAGAACCCGG+AGG + chr6.1:24628394-24628413 None:intergenic 60.0%
TCATCAGCCACTGCTGCCGA+CGG - chr6.1:24626698-24626717 MS.gene054310:CDS 60.0%
! TCCTCGGATTAGGTGCGTCC+TGG + chr6.1:24627369-24627388 None:intergenic 60.0%
GCCGAGCAGCTGCTTCGACT+TGG + chr6.1:24628831-24628850 None:intergenic 65.0%
GCTGCCGACGGAAGCAGAGA+AGG - chr6.1:24626710-24626729 MS.gene054310:CDS 65.0%
GTCGAAGCAGCTGCTCGGCA+CGG - chr6.1:24628832-24628851 MS.gene054310:CDS 65.0%
TCTGCTTCCGTCGGCAGCAG+TGG + chr6.1:24626708-24626727 None:intergenic 65.0%
! TGGTGTCGGACACCGACACC+AGG - chr6.1:24627348-24627367 MS.gene054310:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 24626677 24628933 24626677 ID=MS.gene054310
chr6.1 mRNA 24626677 24628933 24626677 ID=MS.gene054310.t1;Parent=MS.gene054310
chr6.1 exon 24628691 24628933 24628691 ID=MS.gene054310.t1.exon1;Parent=MS.gene054310.t1
chr6.1 CDS 24628691 24628933 24628691 ID=cds.MS.gene054310.t1;Parent=MS.gene054310.t1
chr6.1 exon 24626677 24627336 24626677 ID=MS.gene054310.t1.exon2;Parent=MS.gene054310.t1
chr6.1 CDS 24626677 24627336 24626677 ID=cds.MS.gene054310.t1;Parent=MS.gene054310.t1
Gene Sequence

>MS.gene054310

ATGAATTCTGCACCACAATCATCATCAGCCACTGCTGCCGACGGAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACATATGACATGGTAGATGATCCCACCACAGATGAGATCATTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACATATTTCAAACACAGCAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGTAAGTCAATTCATGCTATAAGCTTCTTTTGATTATTTCATTGTTACTTTGTATGATCAATTAGTTATTGTCTTTCATTGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATATTGATTATTATGATGATCATGATCATTAAGAGATTGATGAAAAAAATGATTAGTAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTTCATTGAGTTTAGTTGGAGATACAAAATGTTGAGACATGAGAATGTTGAAAGATGGATGAGATATTATAGTCTTGTATGACACTTTTATTCTATGAAACATAAAACACAGACATCAAACACGACACAAACAACGAAACGCAAACACCGACAATGACATAATTTAGTATAATCATATGTGTTGGTGTCGGACACCGACACCAGGACGCACCTAATCCGAGGAGTGTCCTTGCTTCGTATGTCTTAATTTTCGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAGAATATTTCTACATCATCTGGATCTTGGTAATGATGATACATCGAATCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTAGTTCCTGACCTATATAAATATGATAAGTAGTTCCTGAAGTATATGAAATGCGTCAATTTAATCTTTGAAGTATACTGAAATTCGTCAATTTTGTCTCTAACATCTTAATTGTTGTGACTAAATTTATGAGTTTCATATACTTTAGAGACTATTTATCATGTTTCTATAGGGTAGGGACTAAATTTGAGATAGGATTTACCCAAAATTTCCCATGTTAGTCATGATGTGTCTGCCATAGTTATACAAATATTACCTTATTTTCAAATCTTTCACATGGCAAACCTATGGGTGTTTTGGAACCCTAAATGTTAAATTTTCCCATTAAGTGCATACCAACACCCTGATTTTTATTGTTTAATCCTACTTCTCTTCTACATCGTAGACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCTTAGATATGATTGAAAAATAGAAATCATGCACTTATGGCAATGAGAAAAAACTAAGGCCCACCACCAGATTTGCTTCCTGAAGTTTTTATGTGTGTAATGAAGAATATTCTTGTAAAAATTTAATGGTATTCTTGTAAAGATTTAATGGTAAATCGTTCAAATAAGTTTGCAGTTCTTATGGCTTTAATGATAAATAATTGATTATGAAGTATGTTTTAATTTGTTATGGTTTATTTATGTGTGCTTTTTATTAGGGATTTCGGAAAGCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAAGCTGTTGCGCGAGAAAAATGCCCTTCAATCCAAACTCCTAAGCTATAATTATCTTGATACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCAATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAAAACTTCTTTGAGAAGGCTCTACAGGATTCTTTTATTGTTGAACTACTTTCCCGCAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGTTGATCACATGCAGCCTGTTGCCGAAGGTAGCTTGGTCGACCTTCCTAGCAATGTTTTCTCTCAGAATCTTTCTGAAGGAGAACTGACAGGGATACAGACAAGAACTGACCCTGCTGATCCAAAGGAGGCTTCAGGTAACGTCCAAGTCGAAGCAGCTGCTCGGCACGGAGTGAATGATGTGTTTTGGGAACAATTCCTTACTGAAAGTCCATGCTGTTCAGACAATGAAGAGGCATTGTCCAACTAA
Protein sequence

>MS.gene054310.t1

MNSAPQSSSATAADGSREGMAPFLQKTYDMVDDPTTDEIISWSSDNKSFIVWNPPEFSRVLLPTYFKHSNFSSFIRQLNTYGFRKADPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSAVDPERAALEKEIEKLLREKNALQSKLLSYNYLDTEKLQLEDFQRQLDGMEKRQTNLQNFFEKALQDSFIVELLSRKIESMDLETYNKKRRLSQVDHMQPVAEGSLVDLPSNVFSQNLSEGELTGIQTRTDPADPKEASGNVQVEAAARHGVNDVFWEQFLTESPCCSDNEEALSN