AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054312

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054312.t1 MTR_6g043060 72.590 332 75 5 1 321 1 327 1.47e-168 471
MS.gene054312.t1 MTR_8g083100 76.871 294 29 4 23 277 23 316 4.01e-153 438
MS.gene054312.t1 MTR_8g083100 78.261 46 10 0 278 323 412 457 9.66e-16 78.2
MS.gene054312.t1 MTR_2g100680 58.228 316 90 6 1 276 12 325 6.17e-116 342
MS.gene054312.t1 MTR_6g044340 62.222 270 74 3 68 323 8 263 7.68e-110 320
MS.gene054312.t1 MTR_2g100670 56.446 287 101 5 1 269 14 294 1.04e-99 296
MS.gene054312.t1 MTR_2g100670 56.446 287 101 5 1 269 122 402 8.46e-98 295
MS.gene054312.t1 MTR_5g029680 51.185 211 89 4 22 218 32 242 7.17e-64 210
MS.gene054312.t1 MTR_8g087540 36.915 363 159 9 15 319 5 355 9.78e-64 207
MS.gene054312.t1 MTR_6g044430 51.383 253 49 6 100 319 14 225 1.64e-62 198
MS.gene054312.t1 MTR_6g044440 58.564 181 42 3 174 323 1 179 5.15e-59 187
MS.gene054312.t1 MTR_4g077970 45.455 209 102 3 20 216 10 218 8.48e-55 186
MS.gene054312.t1 MTR_7g095680 43.612 227 111 5 19 235 46 265 1.02e-50 172
MS.gene054312.t1 MTR_1g102860 43.498 223 109 6 7 215 20 239 1.94e-50 170
MS.gene054312.t1 MTR_3g104550 43.137 204 110 3 19 217 43 245 5.60e-49 168
MS.gene054312.t1 MTR_1g061170 40.500 200 116 2 20 216 47 246 3.16e-46 162
MS.gene054312.t1 MTR_1g071360 40.930 215 115 3 22 231 32 239 5.00e-46 159
MS.gene054312.t1 MTR_1g071360 40.930 215 115 3 22 231 29 236 8.67e-46 159
MS.gene054312.t1 MTR_3g101870 67.647 102 33 0 12 113 14 115 3.31e-45 158
MS.gene054312.t1 MTR_8g105780 48.205 195 88 6 20 201 20 214 1.76e-44 156
MS.gene054312.t1 MTR_6g086805 37.450 251 129 3 20 255 9 246 3.20e-43 152
MS.gene054312.t1 MTR_5g017470 62.264 106 40 0 17 122 4 109 6.74e-43 149
MS.gene054312.t1 MTR_5g010680 61.111 108 42 0 6 113 8 115 2.38e-42 150
MS.gene054312.t1 MTR_5g089170 69.892 93 28 0 21 113 24 116 3.34e-42 147
MS.gene054312.t1 MTR_6g044350 55.102 147 54 3 174 309 1 146 1.36e-41 142
MS.gene054312.t1 MTR_2g017890 59.259 108 44 0 12 119 5 112 1.37e-40 146
MS.gene054312.t1 MTR_0020s0020 63.441 93 34 0 21 113 32 124 3.19e-38 139
MS.gene054312.t1 MTR_1g100777 61.053 95 37 0 21 115 17 111 1.20e-37 136
MS.gene054312.t1 MTR_7g091370 50.442 113 56 0 1 113 1 113 3.83e-37 133
MS.gene054312.t1 MTR_4g088900 58.763 97 36 1 21 113 32 128 1.50e-34 125
MS.gene054312.t1 MTR_6g044510 64.103 78 26 1 246 323 13 88 6.45e-26 99.0
MS.gene054312.t1 MTR_5g047190 46.392 97 45 2 30 119 1 97 2.33e-22 90.1
MS.gene054312.t1 MTR_4g045757 62.319 69 25 1 12 79 3 71 4.53e-21 85.9
MS.gene054312.t1 MTR_6g044500 52.000 75 25 2 205 268 1 75 1.06e-13 66.2
MS.gene054312.t1 MTR_1g061170 30.189 159 100 4 61 216 1 151 7.89e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054312.t1 AT4G13980 56.710 231 98 2 1 229 1 231 6.65e-85 263
MS.gene054312.t1 AT4G17750 49.074 216 89 4 22 216 52 267 6.75e-60 199
MS.gene054312.t1 AT1G32330 47.234 235 105 5 1 216 16 250 2.58e-58 195
MS.gene054312.t1 AT1G32330 47.234 235 105 5 1 216 16 250 2.61e-58 195
MS.gene054312.t1 AT5G16820 47.345 226 101 6 20 228 25 249 1.01e-57 193
MS.gene054312.t1 AT5G16820 47.345 226 101 6 20 228 25 249 1.01e-57 193
MS.gene054312.t1 AT3G02990 42.918 233 120 4 8 228 9 240 1.37e-56 190
MS.gene054312.t1 AT4G18880 48.341 211 99 3 16 220 9 215 1.58e-51 175
MS.gene054312.t1 AT5G45710 36.025 322 171 8 14 319 5 307 8.41e-50 169
MS.gene054312.t1 AT5G45710 36.025 322 171 8 14 319 5 307 8.41e-50 169
MS.gene054312.t1 AT2G26150 43.961 207 108 4 19 217 41 247 2.01e-48 166
MS.gene054312.t1 AT2G26150 43.961 207 108 4 19 217 41 247 2.01e-48 166
MS.gene054312.t1 AT3G22830 34.268 321 182 8 19 311 58 377 3.02e-48 167
MS.gene054312.t1 AT5G03720 42.574 202 108 3 20 213 53 254 2.33e-46 162
MS.gene054312.t1 AT5G03720 42.574 202 108 3 20 213 53 254 2.33e-46 162
MS.gene054312.t1 AT3G24520 46.243 173 73 3 20 191 15 168 7.06e-45 156
MS.gene054312.t1 AT3G51910 40.758 211 108 5 22 226 29 228 1.43e-44 153
MS.gene054312.t1 AT1G46264 63.393 112 31 1 21 122 33 144 1.51e-44 155
MS.gene054312.t1 AT1G67970 44.792 192 93 5 20 201 17 205 4.63e-44 155
MS.gene054312.t1 AT5G43840 42.246 187 96 3 21 205 18 194 2.14e-41 145
MS.gene054312.t1 AT5G54070 40.952 210 113 3 20 223 69 273 3.07e-41 146
MS.gene054312.t1 AT3G63350 38.806 201 114 3 5 196 3 203 7.18e-40 141
MS.gene054312.t1 AT4G11660 62.000 100 38 0 14 113 51 150 7.21e-39 141
MS.gene054312.t1 AT4G36990 58.095 105 44 0 11 115 3 107 1.29e-38 138
MS.gene054312.t1 AT5G62020 50.420 119 58 1 1 118 1 119 2.12e-37 135
MS.gene054312.t1 AT2G41690 52.174 115 55 0 22 136 40 154 1.52e-36 132
MS.gene054312.t1 AT4G18870 46.591 88 47 0 22 109 146 233 3.12e-22 94.7
MS.gene054312.t1 AT4G18870 45.833 96 51 1 14 109 5 99 4.02e-22 94.7
MS.gene054312.t1 AT1G77570 42.391 92 49 3 19 106 22 113 2.08e-16 75.5
MS.gene054312.t1 AT2G26150 34.028 144 87 4 82 217 49 192 4.70e-15 74.7
MS.gene054312.t1 AT2G26150 34.028 144 87 4 82 217 49 192 4.70e-15 74.7
MS.gene054312.t1 AT4G19630 34.021 97 61 1 19 112 8 104 3.44e-13 66.2

Find 73 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.1:+24573500 None:intergenic
TGCAGGCTTTCCTCATCTTC+AGG 0.204361 6.1:+24573149 None:intergenic
ATAATTATAGCTTAGGAGTT+TGG 0.257010 6.1:+24573436 None:intergenic
GAAATTGTTGTGTTTGAAAT+AGG 0.280393 6.1:+24574696 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.313501 6.1:-24573282 MS.gene054312:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 6.1:-24574783 MS.gene054312:CDS
ACAGAGTGAATGATGTGTTT+TGG 0.360172 6.1:-24572992 MS.gene054312:CDS
ATAACAAAAGCTTCATCGTT+TGG 0.362747 6.1:-24574753 MS.gene054312:CDS
GCAGGCTTTCCTCATCTTCA+GGG 0.373078 6.1:+24573150 None:intergenic
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.1:+24574724 None:intergenic
AGAACTGACCAAGCAGTTAC+TGG 0.382764 6.1:-24573086 MS.gene054312:CDS
ACGTTACCTGAAGCCTCCTT+TGG 0.398346 6.1:+24573038 None:intergenic
TAAGAAAAGGCGATTGTCTC+AGG 0.414889 6.1:-24573249 MS.gene054312:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417304 6.1:+24573212 None:intergenic
AGCTTAGGAGTTTGGATTGA+AGG 0.419735 6.1:+24573444 None:intergenic
CTTTCTGACGGAGAACTGAT+AGG 0.440803 6.1:-24573119 MS.gene054312:CDS
TCTCAAGATAATTATAGCTT+AGG 0.451761 6.1:+24573429 None:intergenic
TTCCCACAAAATCGAATCCA+TGG 0.458946 6.1:-24573288 MS.gene054312:CDS
GAGTTTATTTGAGATATCTT+CGG 0.461136 6.1:+24573172 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.461564 6.1:-24573262 MS.gene054312:CDS
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.1:-24573537 MS.gene054312:CDS
GCCGAGCAGCTGCTTCGACT+TGG 0.471786 6.1:+24573015 None:intergenic
AAAATCAGATCCTGATCGTT+GGG 0.473476 6.1:-24573630 MS.gene054312:CDS
GCTAATCCAAAGGAGGCTTC+AGG 0.474888 6.1:-24573044 MS.gene054312:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.1:+24573620 None:intergenic
ATATCTTCGGCAATATTCCC+TGG 0.479669 6.1:+24573185 None:intergenic
GCTTAGGAGTTTGGATTGAA+GGG 0.480417 6.1:+24573445 None:intergenic
ATTATAAGTTTCCAAATCCA+TGG 0.481800 6.1:+24573271 None:intergenic
GAAGGTAGCTTGGTTAATCC+AGG 0.481980 6.1:-24573203 MS.gene054312:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.482063 6.1:-24573213 MS.gene054312:CDS
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.1:-24573504 MS.gene054312:CDS
CGACGGAAGCAGAGAAGGTA+TGG 0.499479 6.1:-24574848 MS.gene054312:CDS
TGAGACTGAAAAGCTTCAGC+TGG 0.500611 6.1:-24573411 MS.gene054312:CDS
TGGATTAACCAAGCTACCTT+CGG 0.502231 6.1:+24573205 None:intergenic
ATTAAGCTGACGGATGAAGC+TGG 0.509640 6.1:+24574672 None:intergenic
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 6.1:-24573342 MS.gene054312:CDS
TGTTGTGTTTGAAATAGGTT+GGG 0.510228 6.1:+24574701 None:intergenic
GAACTGACCAAGCAGTTACT+GGG 0.511430 6.1:-24573085 MS.gene054312:CDS
TTGTTGTGTTTGAAATAGGT+TGG 0.516310 6.1:+24574700 None:intergenic
TACTAATGTGGCTAATCCAA+AGG 0.539154 6.1:-24573054 MS.gene054312:CDS
GAAAATCAGATCCTGATCGT+TGG 0.543561 6.1:-24573631 MS.gene054312:CDS
TCATACGTCTTCTGAAGAAA+CGG 0.543831 6.1:+24574823 None:intergenic
TTCTACTGTAGATCCAGAAA+GGG 0.545124 6.1:-24573513 MS.gene054312:CDS
TCATCAGCCGCTGCTGCCGA+CGG 0.546634 6.1:-24574865 MS.gene054312:CDS
TCAGCGGCGATTGGATGGCA+TGG 0.549084 6.1:-24573381 MS.gene054312:CDS
TCCAAGTCGAAGCAGCTGCT+CGG 0.549998 6.1:-24573016 MS.gene054312:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 6.1:+24573537 None:intergenic
TCTGCTTCCGTCGGCAGCAG+CGG 0.553780 6.1:+24574858 None:intergenic
GCTGCCGACGGAAGCAGAGA+AGG 0.554788 6.1:-24574853 MS.gene054312:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.1:-24573536 MS.gene054312:CDS
GTTCTACTGTAGATCCAGAA+AGG 0.564434 6.1:-24573514 MS.gene054312:CDS
CGCACGCAGCCTGTTGCCGA+AGG 0.572450 6.1:-24573221 MS.gene054312:CDS
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.1:+24573552 None:intergenic
AAATAAACTCCCTGAAGATG+AGG 0.580535 6.1:-24573159 MS.gene054312:CDS
AGAAACGATCTCATCTGTGG+TGG 0.582151 6.1:+24574786 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 6.1:-24573373 MS.gene054312:CDS
AAGATGCCCCAGTAACTGCT+TGG 0.594092 6.1:+24573078 None:intergenic
TCTTCATTGTCTGAACAGCA+TGG 0.597736 6.1:+24572948 None:intergenic
GCAGCGGCTGATGATGATTG+TGG 0.600309 6.1:+24574874 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.1:+24573542 None:intergenic
CATACCTTCTCTGCTTCCGT+CGG 0.623107 6.1:+24574849 None:intergenic
TTACGTAGGTATTAAGCTGA+CGG 0.626576 6.1:+24574662 None:intergenic
GAAACGATCTCATCTGTGGT+GGG 0.626600 6.1:+24574787 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.1:+24574727 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.629396 6.1:+24574783 None:intergenic
ATGCTGTTCAGACAATGAAG+AGG 0.637659 6.1:-24572946 MS.gene054312:CDS
AAGGTAGCTTGGTTAATCCA+GGG 0.645414 6.1:-24573202 MS.gene054312:CDS
TAATGTGGCTAATCCAAAGG+AGG 0.646897 6.1:-24573051 MS.gene054312:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.1:+24574728 None:intergenic
TCTTCAGAAGACGTATGACA+TGG 0.665030 6.1:-24574818 MS.gene054312:CDS
TCTGGATCTACAGTAGAACC+CGG 0.676402 6.1:+24573518 None:intergenic
AACTGACCAAGCAGTTACTG+GGG 0.698051 6.1:-24573084 MS.gene054312:CDS
GGATCTACAGTAGAACCCGG+AGG 0.764137 6.1:+24573521 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.1:24574220-24574239 None:intergenic 10.0%
!! AGAATTAAACAATAAAAATC+AGG + chr6.1:24573864-24573883 None:intergenic 15.0%
!! ATATTGAATTATATCATTGT+CGG + chr6.1:24573539-24573558 None:intergenic 15.0%
!!! ATGTATGTTTTAATTTGTTA+CGG - chr6.1:24574132-24574151 MS.gene054312:intron 15.0%
!! TGATTAGTAAGATAAGAATT+AGG - chr6.1:24573377-24573396 MS.gene054312:CDS 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.1:24574556-24574575 MS.gene054312:intron 20.0%
!! TTATCATATTGATATAGTTC+AGG + chr6.1:24573810-24573829 None:intergenic 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.1:24573271-24573290 MS.gene054312:CDS 20.0%
! AAAAAAGTTTGTAGGTCTTA+TGG - chr6.1:24574083-24574102 MS.gene054312:intron 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.1:24573965-24573984 MS.gene054312:intron 25.0%
! AATCGTTCAAAAAAGTTTGT+AGG - chr6.1:24574075-24574094 MS.gene054312:intron 25.0%
! ATAATTATAGCTTAGGAGTT+TGG + chr6.1:24574385-24574404 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.1:24573766-24573785 None:intergenic 25.0%
! ATTAGGTACAACTTTAGATT+TGG - chr6.1:24573394-24573413 MS.gene054312:CDS 25.0%
! ATTATAAGTTTCCAAATCCA+TGG + chr6.1:24574550-24574569 None:intergenic 25.0%
! ATTATTTCACTGAGTTTAGT+TGG - chr6.1:24573417-24573436 MS.gene054312:CDS 25.0%
! TCTCAAGATAATTATAGCTT+AGG + chr6.1:24574392-24574411 None:intergenic 25.0%
! TGAGAAATTATAGTGTTGTA+TGG - chr6.1:24573480-24573499 MS.gene054312:CDS 25.0%
! TGATATCTAAGTCTTAGATA+GGG - chr6.1:24573937-24573956 MS.gene054312:intron 25.0%
! TTGATATCTAAGTCTTAGAT+AGG - chr6.1:24573936-24573955 MS.gene054312:intron 25.0%
!! GAAATTGTTGTGTTTGAAAT+AGG + chr6.1:24573125-24573144 None:intergenic 25.0%
!! GAGTTTATTTGAGATATCTT+CGG + chr6.1:24574649-24574668 None:intergenic 25.0%
AAAAAATTTCTGCAAGCATC+TGG - chr6.1:24573703-24573722 MS.gene054312:intron 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.1:24574236-24574255 MS.gene054312:intron 30.0%
ATAACAAAAGCTTCATCGTT+TGG - chr6.1:24573065-24573084 MS.gene054312:CDS 30.0%
ATAATCATACATGTCGTTGT+CGG - chr6.1:24573557-24573576 MS.gene054312:CDS 30.0%
ATATAGTTCAGGAACTAAAC+CGG + chr6.1:24573799-24573818 None:intergenic 30.0%
CAAACAATCAAGCAAAAACA+CGG + chr6.1:24573255-24573274 None:intergenic 30.0%
CTTCATCGAATTTCAATTAG+TGG - chr6.1:24573305-24573324 MS.gene054312:CDS 30.0%
CTTCATTACACAAAAACTTC+AGG + chr6.1:24574029-24574048 None:intergenic 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.1:24573777-24573796 MS.gene054312:intron 30.0%
! TGTTGTGTTTGAAATAGGTT+GGG + chr6.1:24573120-24573139 None:intergenic 30.0%
! TTGTTGTGTTTGAAATAGGT+TGG + chr6.1:24573121-24573140 None:intergenic 30.0%
!! ATTTACGTGTGCTTTTTATC+AGG - chr6.1:24574158-24574177 MS.gene054312:intron 30.0%
!! TTTACGTGTGCTTTTTATCA+GGG - chr6.1:24574159-24574178 MS.gene054312:intron 30.0%
!!! TAGGTCTTAATTTTTGGTGT+GGG - chr6.1:24573626-24573645 MS.gene054312:CDS 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr6.1:24574017-24574036 None:intergenic 35.0%
AAAATCAGATCCTGATCGTT+GGG - chr6.1:24574188-24574207 MS.gene054312:intron 35.0%
AAATAAACTCCCTGAAGATG+AGG - chr6.1:24574659-24574678 MS.gene054312:intron 35.0%
AAATTAAGACCTACGAAGCA+AGG + chr6.1:24573619-24573638 None:intergenic 35.0%
AACCTGAGAATGTTGAAAGA+TGG - chr6.1:24573456-24573475 MS.gene054312:CDS 35.0%
ATCCATCTTTCAACATTCTC+AGG + chr6.1:24573461-24573480 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr6.1:24574536-24574555 MS.gene054312:intron 35.0%
CTGCAGAAAAATCTTTCTGA+CGG - chr6.1:24574687-24574706 MS.gene054312:CDS 35.0%
TACTAATGTGGCTAATCCAA+AGG - chr6.1:24574764-24574783 MS.gene054312:CDS 35.0%
TTACGTAGGTATTAAGCTGA+CGG + chr6.1:24573159-24573178 None:intergenic 35.0%
TTCTACTGTAGATCCAGAAA+GGG - chr6.1:24574305-24574324 MS.gene054312:intron 35.0%
! AATCCATGGATTCGATTTTG+TGG + chr6.1:24574536-24574555 None:intergenic 35.0%
! ACAGAGTGAATGATGTGTTT+TGG - chr6.1:24574826-24574845 MS.gene054312:CDS 35.0%
! ATCCATGGATTCGATTTTGT+GGG + chr6.1:24574535-24574554 None:intergenic 35.0%
! CAGAGTGAATGATGTGTTTT+GGG - chr6.1:24574827-24574846 MS.gene054312:CDS 35.0%
! GCTTCGTAGGTCTTAATTTT+TGG - chr6.1:24573620-24573639 MS.gene054312:CDS 35.0%
! TAGCATGAATTGACTTACGT+AGG + chr6.1:24573173-24573192 None:intergenic 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr6.1:24572998-24573017 None:intergenic 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr6.1:24574476-24574495 MS.gene054312:intron 35.0%
!! ACGATGAAGCTTTTGTTATC+AGG + chr6.1:24573064-24573083 None:intergenic 35.0%
!! CGATGAAGCTTTTGTTATCA+GGG + chr6.1:24573063-24573082 None:intergenic 35.0%
!!! GTAGGTCTTAATTTTTGGTG+TGG - chr6.1:24573625-24573644 MS.gene054312:CDS 35.0%
AAGGTAGCTTGGTTAATCCA+GGG - chr6.1:24574616-24574635 MS.gene054312:intron 40.0%
AGCTTAGGAGTTTGGATTGA+AGG + chr6.1:24574377-24574396 None:intergenic 40.0%
ATATCTTCGGCAATATTCCC+TGG + chr6.1:24574636-24574655 None:intergenic 40.0%
ATGCTGTTCAGACAATGAAG+AGG - chr6.1:24574872-24574891 MS.gene054312:CDS 40.0%
GAAAATCAGATCCTGATCGT+TGG - chr6.1:24574187-24574206 MS.gene054312:intron 40.0%
GCTTAGGAGTTTGGATTGAA+GGG + chr6.1:24574376-24574395 None:intergenic 40.0%
GTTCTACTGTAGATCCAGAA+AGG - chr6.1:24574304-24574323 MS.gene054312:intron 40.0%
TAAGAAAAGGCGATTGTCTC+AGG - chr6.1:24574569-24574588 MS.gene054312:intron 40.0%
TAATGTGGCTAATCCAAAGG+AGG - chr6.1:24574767-24574786 MS.gene054312:CDS 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr6.1:24573000-24573019 MS.gene054312:CDS 40.0%
TCTTCATTGTCTGAACAGCA+TGG + chr6.1:24574873-24574892 None:intergenic 40.0%
TGGATTAACCAAGCTACCTT+CGG + chr6.1:24574616-24574635 None:intergenic 40.0%
TTCCCACAAAATCGAATCCA+TGG - chr6.1:24574530-24574549 MS.gene054312:intron 40.0%
! CGTCAGAAAGATTTTTCTGC+AGG + chr6.1:24574689-24574708 None:intergenic 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr6.1:24573651-24573670 MS.gene054312:intron 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr6.1:24574421-24574440 MS.gene054312:intron 40.0%
!! CATCTGGATCTTGGTAATGA+TGG - chr6.1:24573719-24573738 MS.gene054312:intron 40.0%
!! TGGGGCATCTTTTACTAATG+TGG - chr6.1:24574752-24574771 MS.gene054312:CDS 40.0%
AACTGACCAAGCAGTTACTG+GGG - chr6.1:24574734-24574753 MS.gene054312:CDS 45.0%
ACTTCAGGAAGCAAATCTGG+CGG + chr6.1:24574014-24574033 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr6.1:24573035-24573054 None:intergenic 45.0%
AGAACTGACCAAGCAGTTAC+TGG - chr6.1:24574732-24574751 MS.gene054312:CDS 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.1:24573097-24573116 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr6.1:24573038-24573057 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr6.1:24573035-24573054 MS.gene054312:CDS 45.0%
CGTACACATCTCAAGCATCT+AGG - chr6.1:24573888-24573907 MS.gene054312:intron 45.0%
CTTTCTGACGGAGAACTGAT+AGG - chr6.1:24574699-24574718 MS.gene054312:CDS 45.0%
GAAACGATCTCATCTGTGGT+GGG + chr6.1:24573034-24573053 None:intergenic 45.0%
GAACTGACCAAGCAGTTACT+GGG - chr6.1:24574733-24574752 MS.gene054312:CDS 45.0%
GAAGGTAGCTTGGTTAATCC+AGG - chr6.1:24574615-24574634 MS.gene054312:intron 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.1:24574269-24574288 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.1:24574279-24574298 None:intergenic 45.0%
TCTGGATCTACAGTAGAACC+CGG + chr6.1:24574303-24574322 None:intergenic 45.0%
TGAGACTGAAAAGCTTCAGC+TGG - chr6.1:24574407-24574426 MS.gene054312:intron 45.0%
TTCTGCAAGCATCTGGATCT+TGG - chr6.1:24573710-24573729 MS.gene054312:intron 45.0%
! ATTAAGCTGACGGATGAAGC+TGG + chr6.1:24573149-24573168 None:intergenic 45.0%
! TCCTTGGATTAGGTGTGTCA+TGG + chr6.1:24573592-24573611 None:intergenic 45.0%
! TTTGGTGTGGGTGTGTGAAT+TGG - chr6.1:24573638-24573657 MS.gene054312:CDS 45.0%
AAGATGCCCCAGTAACTGCT+TGG + chr6.1:24574743-24574762 None:intergenic 50.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr6.1:24574783-24574802 None:intergenic 50.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.1:24573094-24573113 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.1:24574314-24574333 MS.gene054312:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.1:24574282-24574301 MS.gene054312:intron 50.0%
CATACCTTCTCTGCTTCCGT+CGG + chr6.1:24572972-24572991 None:intergenic 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.1:24574281-24574300 MS.gene054312:intron 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.1:24573093-24573112 None:intergenic 50.0%
GATTAGGTGTGTCATGGCGT+CGG + chr6.1:24573586-24573605 None:intergenic 50.0%
GATTGGATGGCATGGAGAAG+AGG - chr6.1:24574445-24574464 MS.gene054312:intron 50.0%
GCAAGGACACTCCTTGGATT+AGG + chr6.1:24573602-24573621 None:intergenic 50.0%
GCAGGCTTTCCTCATCTTCA+GGG + chr6.1:24574671-24574690 None:intergenic 50.0%
GCCATGACACACCTAATCCA+AGG - chr6.1:24573588-24573607 MS.gene054312:CDS 50.0%
GCTAATCCAAAGGAGGCTTC+AGG - chr6.1:24574774-24574793 MS.gene054312:CDS 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.1:24573642-24573661 MS.gene054312:intron 50.0%
TACGAAGCAAGGACACTCCT+TGG + chr6.1:24573608-24573627 None:intergenic 50.0%
TGCAGGCTTTCCTCATCTTC+AGG + chr6.1:24574672-24574691 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.1:24574321-24574340 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.1:24574201-24574220 None:intergenic 50.0%
! GATTTTCAGCGGCGATTGGA+TGG - chr6.1:24574432-24574451 MS.gene054312:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr6.1:24574428-24574447 MS.gene054312:intron 50.0%
!! AAGGAGTGTCCTTGCTTCGT+AGG - chr6.1:24573607-24573626 MS.gene054312:CDS 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.1:24574609-24574628 None:intergenic 55.0%
AGGAAGCAAATCTGGCGGTG+GGG + chr6.1:24574009-24574028 None:intergenic 55.0%
CAGGAAGCAAATCTGGCGGT+GGG + chr6.1:24574010-24574029 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.1:24574284-24574303 None:intergenic 55.0%
CGACGGAAGCAGAGAAGGTA+TGG - chr6.1:24572970-24572989 MS.gene054312:CDS 55.0%
GGATCTACAGTAGAACCCGG+AGG + chr6.1:24574300-24574319 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.1:24573641-24573660 MS.gene054312:CDS 55.0%
TCAGGAAGCAAATCTGGCGG+TGG + chr6.1:24574011-24574030 None:intergenic 55.0%
TCCAAGTCGAAGCAGCTGCT+CGG - chr6.1:24574802-24574821 MS.gene054312:CDS 55.0%
! GCAGCGGCTGATGATGATTG+TGG + chr6.1:24572947-24572966 None:intergenic 55.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.1:24574605-24574624 MS.gene054312:intron 60.0%
TCAGCGGCGATTGGATGGCA+TGG - chr6.1:24574437-24574456 MS.gene054312:intron 60.0%
GCCGAGCAGCTGCTTCGACT+TGG + chr6.1:24574806-24574825 None:intergenic 65.0%
GCTGCCGACGGAAGCAGAGA+AGG - chr6.1:24572965-24572984 MS.gene054312:CDS 65.0%
TCATCAGCCGCTGCTGCCGA+CGG - chr6.1:24572953-24572972 MS.gene054312:CDS 65.0%
TCTGCTTCCGTCGGCAGCAG+CGG + chr6.1:24572963-24572982 None:intergenic 65.0%
CGCACGCAGCCTGTTGCCGA+AGG - chr6.1:24574597-24574616 MS.gene054312:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 24572932 24574908 24572932 ID=MS.gene054312
chr6.1 mRNA 24572932 24574908 24572932 ID=MS.gene054312.t1;Parent=MS.gene054312
chr6.1 exon 24574666 24574908 24574666 ID=MS.gene054312.t1.exon1;Parent=MS.gene054312.t1
chr6.1 CDS 24574666 24574908 24574666 ID=cds.MS.gene054312.t1;Parent=MS.gene054312.t1
chr6.1 exon 24572932 24573660 24572932 ID=MS.gene054312.t1.exon2;Parent=MS.gene054312.t1
chr6.1 CDS 24572932 24573660 24572932 ID=cds.MS.gene054312.t1;Parent=MS.gene054312.t1
Gene Sequence

>MS.gene054312

ATGAATTCTGCACCACAATCATCATCAGCCGCTGCTGCCGACGGAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACGTATGACATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCCCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATCCGTCAGCTTAATACCTACGTAAGTCAATTCATGCTATAAGCTTCTTTTGATTATTTCATTGTTACTTTGTATGATCAATTAGTTATTGTCTTTCACCGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATATTGATTATTATGATGATAGTGATCATTAAGAGATTGATGAAAAAAATGATTAGTAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTTCACTGAGTTTAGTTGGAGATACAAAATTTTGAAACCTGAGAATGTTGAAAGATGGATGAGAAATTATAGTGTTGTATGGCACTTTTATTCTATGAAACATAAAACAGAGACACCGACAATGATATAATTCAATATAATCATACATGTCGTTGTCGGACACCGACGCCATGACACACCTAATCCAAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTTGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACAATCAAAAAAATTTCTGCAAGCATCTGGATCTTGGTAATGATGGTACATCGAATCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTAGTTCCTGAACTATATCAATATGATAAGTAGTTTCTAAAGTATATGAAATTTGTAGTTCCTGATTTTTATTGTTTAATTCTGCATCGTACACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCTTAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGCCCCACCGCCAGATTTGCTTCCTGAAGTTTTTGTGTAATGAAGAATATTCTTGTAGAGATTTAATAGTAAATCGTTCAAAAAAGTTTGTAGGTCTTATGGTTGTAATGATAAATAATTGTTTAAGAATGTATGTTTTAATTTGTTACGGTTTATTTACGTGTGCTTTTTATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTACTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAAGCTGTTTCGCGCGAAAAATGCCCTTCAATCCAAACTCCTAAGCTATAATTATCTTGAGACTGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAAGATTCTTTTATTGTTGAACTTCTTTCCCACAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGTTGATCGCACGCAGCCTGTTGCCGAAGGTAGCTTGGTTAATCCAGGGAATATTGCCGAAGATATCTCAAATAAACTCCCTGAAGATGAGGAAAGCCTGCAGAAAAATCTTTCTGACGGAGAACTGATAGGAATGCAGACAAGAACTGACCAAGCAGTTACTGGGGCATCTTTTACTAATGTGGCTAATCCAAAGGAGGCTTCAGGTAACGTCCAAGTCGAAGCAGCTGCTCGGCACAGAGTGAATGATGTGTTTTGGGAACAATTTCTTACTGAAAGTCCATGCTGTTCAGACAATGAAGAGGAAATGTTCAACTAA
Protein sequence

>MS.gene054312.t1

MNSAPQSSSAAAADGSREGMAPFLQKTYDMVDDPTTDEIVSWSPDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSTVDPERAALEKEIEKLFRAKNALQSKLLSYNYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSHKIESMDLETYNKKRRLSQVDRTQPVAEGSLVNPGNIAEDISNKLPEDEESLQKNLSDGELIGMQTRTDQAVTGASFTNVANPKEASGNVQVEAAARHRVNDVFWEQFLTESPCCSDNEEEMFN