AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054313

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054313.t1 MTR_6g043060 70.517 329 81 4 1 318 1 324 2.46e-160 451
MS.gene054313.t1 MTR_8g083100 76.871 294 29 4 23 277 23 316 2.06e-153 439
MS.gene054313.t1 MTR_2g100680 57.911 316 91 6 1 276 12 325 3.16e-115 340
MS.gene054313.t1 MTR_6g044340 60.755 265 76 3 68 318 8 258 9.19e-104 305
MS.gene054313.t1 MTR_2g100670 56.690 284 105 5 1 269 14 294 9.30e-100 296
MS.gene054313.t1 MTR_2g100670 56.098 287 102 5 1 269 122 402 5.82e-98 295
MS.gene054313.t1 MTR_5g029680 51.185 211 89 4 22 218 32 242 3.72e-64 211
MS.gene054313.t1 MTR_8g087540 37.079 356 154 9 15 312 5 348 4.37e-62 202
MS.gene054313.t1 MTR_6g044430 50.794 252 50 6 100 318 14 224 1.58e-61 196
MS.gene054313.t1 MTR_6g044440 59.302 172 37 3 174 314 1 170 1.43e-56 181
MS.gene054313.t1 MTR_4g077970 45.455 209 102 3 20 216 10 218 8.07e-55 186
MS.gene054313.t1 MTR_1g102860 43.498 223 109 6 7 215 20 239 1.56e-50 171
MS.gene054313.t1 MTR_7g095680 45.894 207 102 4 19 215 46 252 2.50e-50 171
MS.gene054313.t1 MTR_3g104550 43.137 204 110 3 19 217 43 245 4.15e-49 168
MS.gene054313.t1 MTR_1g061170 41.000 200 115 2 20 216 47 246 7.09e-47 164
MS.gene054313.t1 MTR_1g071360 42.574 202 104 3 22 218 32 226 1.00e-45 158
MS.gene054313.t1 MTR_1g071360 43.000 200 102 3 22 216 29 221 1.54e-45 159
MS.gene054313.t1 MTR_3g101870 67.647 102 33 0 12 113 14 115 3.79e-45 157
MS.gene054313.t1 MTR_8g105780 48.205 195 88 6 20 201 20 214 1.15e-44 156
MS.gene054313.t1 MTR_5g017470 62.264 106 40 0 17 122 4 109 1.48e-42 149
MS.gene054313.t1 MTR_6g044350 54.795 146 54 2 174 308 1 145 2.67e-42 143
MS.gene054313.t1 MTR_5g089170 69.892 93 28 0 21 113 24 116 2.88e-42 147
MS.gene054313.t1 MTR_5g010680 61.111 108 42 0 6 113 8 115 3.06e-42 150
MS.gene054313.t1 MTR_6g086805 40.187 214 101 2 20 219 9 209 7.37e-42 148
MS.gene054313.t1 MTR_2g017890 59.259 108 44 0 12 119 5 112 1.93e-40 145
MS.gene054313.t1 MTR_0020s0020 63.441 93 34 0 21 113 32 124 3.13e-38 139
MS.gene054313.t1 MTR_1g100777 61.053 95 37 0 21 115 17 111 2.28e-37 135
MS.gene054313.t1 MTR_7g091370 50.442 113 56 0 1 113 1 113 4.37e-37 132
MS.gene054313.t1 MTR_4g088900 58.763 97 36 1 21 113 32 128 2.21e-34 125
MS.gene054313.t1 MTR_5g047190 46.392 97 45 2 30 119 1 97 2.53e-22 89.7
MS.gene054313.t1 MTR_4g045757 62.319 69 25 1 12 79 3 71 2.76e-21 86.7
MS.gene054313.t1 MTR_6g044510 57.534 73 29 1 246 318 13 83 1.56e-19 82.0
MS.gene054313.t1 MTR_6g044500 52.000 75 25 1 205 268 1 75 4.76e-16 72.8
MS.gene054313.t1 MTR_1g061170 30.189 159 100 4 61 216 1 151 6.18e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054313.t1 AT4G13980 56.710 231 98 2 1 229 1 231 3.55e-84 261
MS.gene054313.t1 AT4G17750 48.611 216 90 4 22 216 52 267 1.25e-58 196
MS.gene054313.t1 AT1G32330 46.809 235 106 5 1 216 16 250 1.44e-58 196
MS.gene054313.t1 AT1G32330 46.809 235 106 5 1 216 16 250 1.79e-58 195
MS.gene054313.t1 AT5G16820 49.289 211 92 5 20 216 25 234 3.58e-58 194
MS.gene054313.t1 AT5G16820 49.289 211 92 5 20 216 25 234 3.58e-58 194
MS.gene054313.t1 AT3G02990 43.777 233 118 4 8 228 9 240 4.95e-58 194
MS.gene054313.t1 AT4G18880 48.341 211 99 3 16 220 9 215 9.23e-52 176
MS.gene054313.t1 AT5G45710 36.624 314 166 7 14 312 5 300 3.37e-49 167
MS.gene054313.t1 AT5G45710 36.624 314 166 7 14 312 5 300 3.37e-49 167
MS.gene054313.t1 AT2G26150 37.676 284 160 7 19 292 41 317 5.10e-49 167
MS.gene054313.t1 AT2G26150 37.676 284 160 7 19 292 41 317 5.10e-49 167
MS.gene054313.t1 AT3G22830 40.741 216 115 3 19 221 58 273 2.50e-47 164
MS.gene054313.t1 AT5G03720 42.574 202 108 3 20 213 53 254 1.07e-46 163
MS.gene054313.t1 AT5G03720 42.574 202 108 3 20 213 53 254 1.07e-46 163
MS.gene054313.t1 AT3G51910 40.758 211 108 5 22 226 29 228 4.27e-45 155
MS.gene054313.t1 AT1G46264 63.393 112 31 1 21 122 33 144 1.49e-44 155
MS.gene054313.t1 AT3G24520 45.665 173 74 3 20 191 15 168 1.89e-43 152
MS.gene054313.t1 AT1G67970 44.792 192 93 5 20 201 17 205 6.74e-43 152
MS.gene054313.t1 AT5G43840 42.246 187 96 3 21 205 18 194 2.09e-41 145
MS.gene054313.t1 AT3G63350 38.806 201 114 3 5 196 3 203 7.83e-40 141
MS.gene054313.t1 AT5G54070 43.169 183 98 2 20 201 69 246 1.05e-39 142
MS.gene054313.t1 AT4G11660 62.000 100 38 0 14 113 51 150 8.34e-39 141
MS.gene054313.t1 AT4G36990 58.095 105 44 0 11 115 3 107 2.29e-38 137
MS.gene054313.t1 AT5G62020 50.420 119 58 1 1 118 1 119 2.80e-37 135
MS.gene054313.t1 AT2G41690 52.174 115 55 0 22 136 40 154 2.57e-36 131
MS.gene054313.t1 AT4G18870 46.591 88 47 0 22 109 146 233 3.73e-22 94.7
MS.gene054313.t1 AT4G18870 45.833 96 51 1 14 109 5 99 6.68e-22 94.0
MS.gene054313.t1 AT1G77570 42.391 92 49 3 19 106 22 113 2.93e-16 75.1
MS.gene054313.t1 AT2G26150 34.028 144 87 4 82 217 49 192 3.79e-15 75.1
MS.gene054313.t1 AT2G26150 34.028 144 87 4 82 217 49 192 3.79e-15 75.1
MS.gene054313.t1 AT4G19630 34.021 97 61 1 19 112 8 104 2.29e-13 66.6

Find 74 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.1:+24564601 None:intergenic
TGCAGGCTTTCCTCATCTTC+AGG 0.217547 6.1:+24564250 None:intergenic
ATAATTATAGCTTAGGAGTT+TGG 0.257010 6.1:+24564537 None:intergenic
ACGGAGTGAATGATGTCTTT+TGG 0.280090 6.1:-24564093 MS.gene054313:CDS
GAAATTGTTGTGTTTGAAAT+AGG 0.280393 6.1:+24566077 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.313501 6.1:-24564383 MS.gene054313:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 6.1:-24566164 MS.gene054313:CDS
ATAACAAAAGCTTCATCGTT+TGG 0.362747 6.1:-24566134 MS.gene054313:CDS
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.1:+24566105 None:intergenic
AGAACTGACCAAGCAATTAC+TGG 0.383163 6.1:-24564187 MS.gene054313:CDS
GCAGGCTTTCCTCATCTTCA+GGG 0.402095 6.1:+24564251 None:intergenic
ACGTTACCTGAAGCCTCCTT+TGG 0.411678 6.1:+24564139 None:intergenic
TAAGAAAAGGCGATTGTCTC+AGG 0.414889 6.1:-24564350 MS.gene054313:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417304 6.1:+24564313 None:intergenic
AGCTTAGGAGTTTGGATTGA+AGG 0.419735 6.1:+24564545 None:intergenic
CATTCAAAACTTGAATATAT+AGG 0.419766 6.1:+24564049 None:intergenic
CGTCAGAAAGATTTCTCTGC+AGG 0.437085 6.1:+24564233 None:intergenic
CTTTCTGACGGAGAACTGAT+AGG 0.440803 6.1:-24564220 MS.gene054313:CDS
TCTCAAGATAATTATAGCTT+AGG 0.451761 6.1:+24564530 None:intergenic
TTCCCACAAAATCGAATCCA+TGG 0.458946 6.1:-24564389 MS.gene054313:CDS
GAGTTTATTTGAGATATCTT+CGG 0.461136 6.1:+24564273 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.461564 6.1:-24564363 MS.gene054313:CDS
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.1:-24564638 MS.gene054313:CDS
AAAATCAGATCCTGATCGTT+GGG 0.473476 6.1:-24564731 MS.gene054313:CDS
GCTAATCCAAAGGAGGCTTC+AGG 0.474888 6.1:-24564145 MS.gene054313:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.1:+24564721 None:intergenic
GCTTAGGAGTTTGGATTGAA+GGG 0.480417 6.1:+24564546 None:intergenic
ATTATAAGTTTCCAAATCCA+TGG 0.481800 6.1:+24564372 None:intergenic
GCCTGTTGCCGAAGGTAGCT+TGG 0.482063 6.1:-24564314 MS.gene054313:CDS
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.1:-24564605 MS.gene054313:CDS
CGACGGAAGCAGAGAAGGTA+TGG 0.499479 6.1:-24566229 MS.gene054313:CDS
TGAGACTGAAAAGCTTCAGC+TGG 0.500611 6.1:-24564512 MS.gene054313:CDS
ATTAAGCTGACGGATGAAGC+TGG 0.509640 6.1:+24566053 None:intergenic
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 6.1:-24564443 MS.gene054313:CDS
TGTTGTGTTTGAAATAGGTT+GGG 0.510228 6.1:+24566082 None:intergenic
TTGTTGTGTTTGAAATAGGT+TGG 0.516310 6.1:+24566081 None:intergenic
GAACTGACCAAGCAATTACT+GGG 0.527335 6.1:-24564186 MS.gene054313:CDS
TGGATTAACCAAGCTACCTT+CGG 0.533584 6.1:+24564306 None:intergenic
ATATCTTCGGCAATATTCCA+TGG 0.535929 6.1:+24564286 None:intergenic
TACTAATGTGGCTAATCCAA+AGG 0.539154 6.1:-24564155 MS.gene054313:CDS
GAAAATCAGATCCTGATCGT+TGG 0.543561 6.1:-24564732 MS.gene054313:CDS
TCATACGTCTTCTGAAGAAA+CGG 0.543831 6.1:+24566204 None:intergenic
TTCTACTGTAGATCCAGAAA+GGG 0.545124 6.1:-24564614 MS.gene054313:CDS
TCATCAGCCGCTGCTGCCGA+CGG 0.546634 6.1:-24566246 MS.gene054313:CDS
TCAGCGGCGATTGGATGGCA+TGG 0.549084 6.1:-24564482 MS.gene054313:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 6.1:+24564638 None:intergenic
TCTGCTTCCGTCGGCAGCAG+CGG 0.553780 6.1:+24566239 None:intergenic
GCTGCCGACGGAAGCAGAGA+AGG 0.554788 6.1:-24566234 MS.gene054313:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.1:-24564637 MS.gene054313:CDS
GTCGAAGCAGCTGCTCGGCA+CGG 0.564292 6.1:-24564112 MS.gene054313:CDS
GTTCTACTGTAGATCCAGAA+AGG 0.564434 6.1:-24564615 MS.gene054313:CDS
TCCGTGTCGAAGCAGCTGCT+CGG 0.565440 6.1:-24564117 MS.gene054313:CDS
AAGGTAGCTTGGTTAATCCA+TGG 0.568191 6.1:-24564303 MS.gene054313:CDS
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.1:+24564653 None:intergenic
AAATAAACTCCCTGAAGATG+AGG 0.580535 6.1:-24564260 MS.gene054313:CDS
AAGATGCCCCAGTAATTGCT+TGG 0.581078 6.1:+24564179 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.582151 6.1:+24566167 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 6.1:-24564474 MS.gene054313:CDS
CACATGCAGCCTGTTGCCGA+AGG 0.596050 6.1:-24564322 MS.gene054313:CDS
CTGCAGAGAAATCTTTCTGA+CGG 0.600207 6.1:-24564232 MS.gene054313:CDS
GCAGCGGCTGATGATGATTG+TGG 0.600309 6.1:+24566255 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.1:+24564643 None:intergenic
GCCGAGCAGCTGCTTCGACA+CGG 0.618982 6.1:+24564116 None:intergenic
CATACCTTCTCTGCTTCCGT+CGG 0.623107 6.1:+24566230 None:intergenic
TTACATAGGTATTAAGCTGA+CGG 0.626576 6.1:+24566043 None:intergenic
GAAACGATCTCATCTGTGGT+GGG 0.626600 6.1:+24566168 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.1:+24566108 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 6.1:+24566164 None:intergenic
TAATGTGGCTAATCCAAAGG+AGG 0.646897 6.1:-24564152 MS.gene054313:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.1:+24566109 None:intergenic
TCTTCAGAAGACGTATGACA+TGG 0.665030 6.1:-24566199 MS.gene054313:CDS
TCTGGATCTACAGTAGAACC+CGG 0.676402 6.1:+24564619 None:intergenic
AACTGACCAAGCAATTACTG+GGG 0.734160 6.1:-24564185 MS.gene054313:CDS
GGATCTACAGTAGAACCCGG+AGG 0.764137 6.1:+24564622 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.1:24565607-24565626 None:intergenic 10.0%
!! AGAATTAAACAATAAAAATC+AGG + chr6.1:24565282-24565301 None:intergenic 15.0%
!!! ATGTATGTTTTAATTTGTTA+CGG - chr6.1:24565519-24565538 MS.gene054313:intron 15.0%
!! ATATTGAATTATGTCAATGT+CGG + chr6.1:24564646-24564665 None:intergenic 20.0%
!! CATTCAAAACTTGAATATAT+AGG + chr6.1:24566260-24566279 None:intergenic 20.0%
!! TGATTAGTAAGATAAGAATT+AGG - chr6.1:24564484-24564503 MS.gene054313:CDS 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.1:24565943-24565962 MS.gene054313:intron 20.0%
!! TTATCATATTGATATAGTTC+AGG + chr6.1:24564917-24564936 None:intergenic 20.0%
!!! ACTATTTATCATGTTTCTAT+AGG - chr6.1:24565058-24565077 MS.gene054313:intron 20.0%
!!! CTATATATTCAAGTTTTGAA+TGG - chr6.1:24566258-24566277 MS.gene054313:CDS 20.0%
!!! CTATTTATCATGTTTCTATA+GGG - chr6.1:24565059-24565078 MS.gene054313:intron 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.1:24564378-24564397 MS.gene054313:CDS 20.0%
! AAAAAAGTTTGTAGGTCTTA+TGG - chr6.1:24565470-24565489 MS.gene054313:intron 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.1:24565353-24565372 MS.gene054313:intron 25.0%
! AATCGTTCAAAAAAGTTTGT+AGG - chr6.1:24565462-24565481 MS.gene054313:intron 25.0%
! ATAATCATATATGTCGTTGT+CGG - chr6.1:24564664-24564683 MS.gene054313:CDS 25.0%
! ATAATTATAGCTTAGGAGTT+TGG + chr6.1:24565772-24565791 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.1:24564873-24564892 None:intergenic 25.0%
! ATTAGGTACAACTTTAGATT+TGG - chr6.1:24564501-24564520 MS.gene054313:CDS 25.0%
! ATTATAAGTTTCCAAATCCA+TGG + chr6.1:24565937-24565956 None:intergenic 25.0%
! ATTATTTCACTGAGTTTAGT+TGG - chr6.1:24564524-24564543 MS.gene054313:CDS 25.0%
! TCACACATTTCATATACTTT+AGG + chr6.1:24564946-24564965 None:intergenic 25.0%
! TCTCAAGATAATTATAGCTT+AGG + chr6.1:24565779-24565798 None:intergenic 25.0%
!! GAAATTGTTGTGTTTGAAAT+AGG + chr6.1:24564232-24564251 None:intergenic 25.0%
!! GAGTTTATTTGAGATATCTT+CGG + chr6.1:24566036-24566055 None:intergenic 25.0%
!!! TGAGAAATTATAGTCTTGTA+TGG - chr6.1:24564587-24564606 MS.gene054313:CDS 25.0%
AAAAAATTTCTGCAAGCATC+TGG - chr6.1:24564810-24564829 MS.gene054313:intron 30.0%
AAAAACTTCAGGAAGAAATC+TGG + chr6.1:24565405-24565424 None:intergenic 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.1:24565623-24565642 MS.gene054313:intron 30.0%
ATAACAAAAGCTTCATCGTT+TGG - chr6.1:24564172-24564191 MS.gene054313:CDS 30.0%
ATATAGTTCAGGAACTAAAC+CGG + chr6.1:24564906-24564925 None:intergenic 30.0%
CTTCATCGAATTTCAATTAG+TGG - chr6.1:24564412-24564431 MS.gene054313:CDS 30.0%
CTTCATTACACAAAAACTTC+AGG + chr6.1:24565416-24565435 None:intergenic 30.0%
TAATTCAGGGACTAAATTGA+TGG - chr6.1:24565108-24565127 MS.gene054313:intron 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.1:24564884-24564903 MS.gene054313:intron 30.0%
TGAGATAGGATGATAATTCA+GGG - chr6.1:24565095-24565114 MS.gene054313:intron 30.0%
TTACATAGGTATTAAGCTGA+CGG + chr6.1:24564266-24564285 None:intergenic 30.0%
TTATAGACGCAGTTTCTAAT+TGG + chr6.1:24565244-24565263 None:intergenic 30.0%
TTGAGATAGGATGATAATTC+AGG - chr6.1:24565094-24565113 MS.gene054313:intron 30.0%
! CTATCTCTTTTACCAAAACA+AGG + chr6.1:24565174-24565193 None:intergenic 30.0%
! TAGCATGAATTGACTTACAT+AGG + chr6.1:24564280-24564299 None:intergenic 30.0%
! TATCATGTTTCTATAGGGTA+GGG - chr6.1:24565064-24565083 MS.gene054313:intron 30.0%
! TGTTGTGTTTGAAATAGGTT+GGG + chr6.1:24564227-24564246 None:intergenic 30.0%
! TTATCATGTTTCTATAGGGT+AGG - chr6.1:24565063-24565082 MS.gene054313:intron 30.0%
! TTGTTGTGTTTGAAATAGGT+TGG + chr6.1:24564228-24564247 None:intergenic 30.0%
!! ATTTACGTGTGCTTTTTATC+AGG - chr6.1:24565545-24565564 MS.gene054313:intron 30.0%
!! TTTACGTGTGCTTTTTATCA+GGG - chr6.1:24565546-24565565 MS.gene054313:intron 30.0%
!!! TAGGTCTTAATTTTTGGTGT+GGG - chr6.1:24564733-24564752 MS.gene054313:CDS 30.0%
AAAATCAGATCCTGATCGTT+GGG - chr6.1:24565575-24565594 MS.gene054313:intron 35.0%
AAATAAACTCCCTGAAGATG+AGG - chr6.1:24566046-24566065 MS.gene054313:intron 35.0%
AAATTAAGACCTACGAAGCA+AGG + chr6.1:24564726-24564745 None:intergenic 35.0%
ATATCTTCGGCAATATTCCA+TGG + chr6.1:24566023-24566042 None:intergenic 35.0%
ATCCATCTTTCTACATTCTC+AGG + chr6.1:24564568-24564587 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr6.1:24565923-24565942 MS.gene054313:intron 35.0%
TACTAATGTGGCTAATCCAA+AGG - chr6.1:24566151-24566170 MS.gene054313:CDS 35.0%
TTCTACTGTAGATCCAGAAA+GGG - chr6.1:24565692-24565711 MS.gene054313:intron 35.0%
! AATCCATGGATTCGATTTTG+TGG + chr6.1:24565923-24565942 None:intergenic 35.0%
! ATCCATGGATTCGATTTTGT+GGG + chr6.1:24565922-24565941 None:intergenic 35.0%
! GCTTCGTAGGTCTTAATTTT+TGG - chr6.1:24564727-24564746 MS.gene054313:CDS 35.0%
! GTAGGGACTAAATTTGAGAT+AGG - chr6.1:24565081-24565100 MS.gene054313:intron 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr6.1:24564105-24564124 None:intergenic 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr6.1:24565863-24565882 MS.gene054313:intron 35.0%
!!! GTAGGTCTTAATTTTTGGTG+TGG - chr6.1:24564732-24564751 MS.gene054313:CDS 35.0%
AACTGACCAAGCAATTACTG+GGG - chr6.1:24566121-24566140 MS.gene054313:CDS 40.0%
AACTTCAGGAAGAAATCTGG+CGG + chr6.1:24565402-24565421 None:intergenic 40.0%
AAGGTAGCTTGGTTAATCCA+TGG - chr6.1:24566003-24566022 MS.gene054313:intron 40.0%
AGAACTGACCAAGCAATTAC+TGG - chr6.1:24566119-24566138 MS.gene054313:CDS 40.0%
AGCTTAGGAGTTTGGATTGA+AGG + chr6.1:24565764-24565783 None:intergenic 40.0%
CAAAACAAGGACGAGTTGTA+TGG + chr6.1:24565161-24565180 None:intergenic 40.0%
CTGCAGAGAAATCTTTCTGA+CGG - chr6.1:24566074-24566093 MS.gene054313:CDS 40.0%
GAAAATCAGATCCTGATCGT+TGG - chr6.1:24565574-24565593 MS.gene054313:intron 40.0%
GAACTGACCAAGCAATTACT+GGG - chr6.1:24566120-24566139 MS.gene054313:CDS 40.0%
GACCTGAGAATGTAGAAAGA+TGG - chr6.1:24564563-24564582 MS.gene054313:CDS 40.0%
GCTTAGGAGTTTGGATTGAA+GGG + chr6.1:24565763-24565782 None:intergenic 40.0%
GTTCACGAATGTGTCATGAA+CGG - chr6.1:24565211-24565230 MS.gene054313:intron 40.0%
GTTCTACTGTAGATCCAGAA+AGG - chr6.1:24565691-24565710 MS.gene054313:intron 40.0%
TAAGAAAAGGCGATTGTCTC+AGG - chr6.1:24565956-24565975 MS.gene054313:intron 40.0%
TAATGTGGCTAATCCAAAGG+AGG - chr6.1:24566154-24566173 MS.gene054313:CDS 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr6.1:24564107-24564126 MS.gene054313:CDS 40.0%
TGGATTAACCAAGCTACCTT+CGG + chr6.1:24566003-24566022 None:intergenic 40.0%
TTCCCACAAAATCGAATCCA+TGG - chr6.1:24565917-24565936 MS.gene054313:intron 40.0%
! ACGGAGTGAATGATGTCTTT+TGG - chr6.1:24566213-24566232 MS.gene054313:CDS 40.0%
! CGGAGTGAATGATGTCTTTT+GGG - chr6.1:24566214-24566233 MS.gene054313:CDS 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr6.1:24564758-24564777 MS.gene054313:intron 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr6.1:24565808-24565827 MS.gene054313:intron 40.0%
!! CATACAACTCGTCCTTGTTT+TGG - chr6.1:24565159-24565178 MS.gene054313:intron 40.0%
!! CATCTGGATCTTGGTAATGA+TGG - chr6.1:24564826-24564845 MS.gene054313:intron 40.0%
!! TGGGGCATCTTTTACTAATG+TGG - chr6.1:24566139-24566158 MS.gene054313:CDS 40.0%
AAGATGCCCCAGTAATTGCT+TGG + chr6.1:24566130-24566149 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr6.1:24564142-24564161 None:intergenic 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.1:24564204-24564223 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr6.1:24564145-24564164 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr6.1:24564142-24564161 MS.gene054313:CDS 45.0%
CGTACACATCTCAAGCATCT+AGG - chr6.1:24565306-24565325 MS.gene054313:intron 45.0%
CGTCAGAAAGATTTCTCTGC+AGG + chr6.1:24566076-24566095 None:intergenic 45.0%
CTTTCTGACGGAGAACTGAT+AGG - chr6.1:24566086-24566105 MS.gene054313:CDS 45.0%
GAAACGATCTCATCTGTGGT+GGG + chr6.1:24564141-24564160 None:intergenic 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.1:24565656-24565675 None:intergenic 45.0%
GATTAGGTGTGTCATGGAGT+CGG + chr6.1:24564693-24564712 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.1:24565666-24565685 None:intergenic 45.0%
TCCATGACACACCTAATCCA+AGG - chr6.1:24564695-24564714 MS.gene054313:CDS 45.0%
TCTGGATCTACAGTAGAACC+CGG + chr6.1:24565690-24565709 None:intergenic 45.0%
TGAGACTGAAAAGCTTCAGC+TGG - chr6.1:24565794-24565813 MS.gene054313:intron 45.0%
TTCTGCAAGCATCTGGATCT+TGG - chr6.1:24564817-24564836 MS.gene054313:intron 45.0%
! ATTAAGCTGACGGATGAAGC+TGG + chr6.1:24564256-24564275 None:intergenic 45.0%
! TCCTTGGATTAGGTGTGTCA+TGG + chr6.1:24564699-24564718 None:intergenic 45.0%
! TTTGGTGTGGGTGTGTGAAT+TGG - chr6.1:24564745-24564764 MS.gene054313:intron 45.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr6.1:24566170-24566189 None:intergenic 50.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.1:24564201-24564220 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.1:24565701-24565720 MS.gene054313:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.1:24565669-24565688 MS.gene054313:intron 50.0%
CATACCTTCTCTGCTTCCGT+CGG + chr6.1:24564079-24564098 None:intergenic 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.1:24565668-24565687 MS.gene054313:intron 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.1:24564200-24564219 None:intergenic 50.0%
GATTGGATGGCATGGAGAAG+AGG - chr6.1:24565832-24565851 MS.gene054313:intron 50.0%
GCAAGGACACTCCTTGGATT+AGG + chr6.1:24564709-24564728 None:intergenic 50.0%
GCAGGCTTTCCTCATCTTCA+GGG + chr6.1:24566058-24566077 None:intergenic 50.0%
GCTAATCCAAAGGAGGCTTC+AGG - chr6.1:24566161-24566180 MS.gene054313:CDS 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.1:24564749-24564768 MS.gene054313:intron 50.0%
TACGAAGCAAGGACACTCCT+TGG + chr6.1:24564715-24564734 None:intergenic 50.0%
TCAGGAAGAAATCTGGCGGT+GGG + chr6.1:24565398-24565417 None:intergenic 50.0%
TGCAGGCTTTCCTCATCTTC+AGG + chr6.1:24566059-24566078 None:intergenic 50.0%
TTCAGGAAGAAATCTGGCGG+TGG + chr6.1:24565399-24565418 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.1:24565708-24565727 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.1:24565588-24565607 None:intergenic 50.0%
! GATTTTCAGCGGCGATTGGA+TGG - chr6.1:24565819-24565838 MS.gene054313:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr6.1:24565815-24565834 MS.gene054313:intron 50.0%
!! AAGGAGTGTCCTTGCTTCGT+AGG - chr6.1:24564714-24564733 MS.gene054313:CDS 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.1:24565996-24566015 None:intergenic 55.0%
CAGGAAGAAATCTGGCGGTG+GGG + chr6.1:24565397-24565416 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.1:24565671-24565690 None:intergenic 55.0%
CGACGGAAGCAGAGAAGGTA+TGG - chr6.1:24564077-24564096 MS.gene054313:CDS 55.0%
GGATCTACAGTAGAACCCGG+AGG + chr6.1:24565687-24565706 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.1:24564748-24564767 MS.gene054313:intron 55.0%
! GCAGCGGCTGATGATGATTG+TGG + chr6.1:24564054-24564073 None:intergenic 55.0%
CACATGCAGCCTGTTGCCGA+AGG - chr6.1:24565984-24566003 MS.gene054313:intron 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.1:24565992-24566011 MS.gene054313:intron 60.0%
TCAGCGGCGATTGGATGGCA+TGG - chr6.1:24565824-24565843 MS.gene054313:intron 60.0%
TCCGTGTCGAAGCAGCTGCT+CGG - chr6.1:24566189-24566208 MS.gene054313:CDS 60.0%
GCCGAGCAGCTGCTTCGACA+CGG + chr6.1:24566193-24566212 None:intergenic 65.0%
GCTGCCGACGGAAGCAGAGA+AGG - chr6.1:24564072-24564091 MS.gene054313:CDS 65.0%
GTCGAAGCAGCTGCTCGGCA+CGG - chr6.1:24566194-24566213 MS.gene054313:CDS 65.0%
TCATCAGCCGCTGCTGCCGA+CGG - chr6.1:24564060-24564079 MS.gene054313:CDS 65.0%
TCTGCTTCCGTCGGCAGCAG+CGG + chr6.1:24564070-24564089 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 24564039 24566289 24564039 ID=MS.gene054313
chr6.1 mRNA 24564039 24566289 24564039 ID=MS.gene054313.t1;Parent=MS.gene054313
chr6.1 exon 24566047 24566289 24566047 ID=MS.gene054313.t1.exon1;Parent=MS.gene054313.t1
chr6.1 CDS 24566047 24566289 24566047 ID=cds.MS.gene054313.t1;Parent=MS.gene054313.t1
chr6.1 exon 24564039 24564761 24564039 ID=MS.gene054313.t1.exon2;Parent=MS.gene054313.t1
chr6.1 CDS 24564039 24564761 24564039 ID=cds.MS.gene054313.t1;Parent=MS.gene054313.t1
Gene Sequence

>MS.gene054313

ATGAATTCTGCACCACAATCATCATCAGCCGCTGCTGCCGACGGAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACGTATGACATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGTAAGTCAATTCATGCTATAAGCTTCTTTTGATTATTTCATTGTTACTTTGTATGATCAATTAGTTATTGTCTTTCACTGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATATTGATTATTATGATGATCGTGATCATTAAGAGATTGATGAAGAAAATGATTAGTAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTTCACTGAGTTTAGTTGGAGATACAAAATGTTGAGACCTGAGAATGTAGAAAGATGGATGAGAAATTATAGTCTTGTATGGCACTTTTATTCTATGAAACATAAAACAGAGACACCGACATTGACATAATTCAATATAATCATATATGTCGTTGTCGGACACCGACTCCATGACACACCTAATCCAAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTTGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAAAAAATTTCTGCAAGCATCTGGATCTTGGTAATGATGGTACATCGAGTCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTAGTTCCTGAACTATATCAATATGATAAGTAGTTCCTAAAGTATATGAAATGTGTGAATTCAATCTTTGAAGTATACTGAAATTCGACAATTTTGTCTCTAACATCTTAATTGTTGTGACTAAATTGATGAGTTTCATATACTTTAGAGACTATTTATCATGTTTCTATAGGGTAGGGACTAAATTTGAGATAGGATGATAATTCAGGGACTAAATTGATGGTTTACATTCAGTGATCAAATAAATGTGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCGATACAACAAAGAAGTTCACGAATGTGTCATGAACGGAAAATGTCCAATTAGAAACTGCGTCTATAAATATGATAAGTAGTTCCTGATTTTTATTGTTTAATTCTGCATCGTACACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGCCCCACCGCCAGATTTCTTCCTGAAGTTTTTGTGTAATGAAGAATATTCTTGTAGAGATTTAATAGTAAATCGTTCAAAAAAGTTTGTAGGTCTTATGGCTGTAATGATAAATAATTGTTTAAGAATGTATGTTTTAATTTGTTACGGTTTATTTACGTGTGCTTTTTATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTACTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAAGCTGTTTCGCGCGAAAAATGCCCTTCAATCCAAACTCCTAAGCTATAATTATCTTGAGACTGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAAGATTCTTTTATTGTTGAACTTCTTTCCCACAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGTTGATCACATGCAGCCTGTTGCCGAAGGTAGCTTGGTTAATCCATGGAATATTGCCGAAGATATCTCAAATAAACTCCCTGAAGATGAGGAAAGCCTGCAGAGAAATCTTTCTGACGGAGAACTGATAGGAATGCAGACAAGAACTGACCAAGCAATTACTGGGGCATCTTTTACTAATGTGGCTAATCCAAAGGAGGCTTCAGGTAACGTCCGTGTCGAAGCAGCTGCTCGGCACGGAGTGAATGATGTCTTTTGGGAACAATTTCTTATATATACTCCTATATATTCAAGTTTTGAATGGTTTTCATAG
Protein sequence

>MS.gene054313.t1

MNSAPQSSSAAAADGSREGMAPFLQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSTVDPERAALEKEIEKLFRAKNALQSKLLSYNYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSHKIESMDLETYNKKRRLSQVDHMQPVAEGSLVNPWNIAEDISNKLPEDEESLQRNLSDGELIGMQTRTDQAITGASFTNVANPKEASGNVRVEAAARHGVNDVFWEQFLIYTPIYSSFEWFS