Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054402.t1 | XP_013450454.1 | 100 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 4.00E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054402.t1 | Q96NC0 | 56.1 | 196 | 83 | 3 | 8 | 201 | 3 | 197 | 4.3e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054402.t1 | A0A072U456 | 100.0 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 2.9e-77 | 297.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene054402.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054402.t1 | MTR_7g112060 | 100.000 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 3.03e-149 | 412 |
| MS.gene054402.t1 | MTR_7g112060 | 99.505 | 202 | 0 | 1 | 1 | 202 | 1 | 201 | 8.88e-147 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054402.t1 | AT3G05760 | 72.000 | 200 | 54 | 1 | 4 | 201 | 2 | 201 | 7.17e-95 | 275 |
| MS.gene054402.t1 | AT3G05760 | 79.021 | 143 | 30 | 0 | 5 | 147 | 3 | 145 | 6.45e-83 | 243 |
Find 43 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACGTTGCTGCCTTGA+TGG | 0.273991 | 7.4:-4420650 | MS.gene054402:CDS |
| AACTACTTGGATCATATTAA+TGG | 0.280544 | 7.4:-4422207 | MS.gene054402:CDS |
| GCAACGTCAGGATCCATTTC+AGG | 0.287879 | 7.4:+4420661 | None:intergenic |
| GTTGCTGCCTTGATGGGGTT+TGG | 0.376323 | 7.4:-4420643 | MS.gene054402:CDS |
| CCTGACGTTGCTGCCTTGAT+GGG | 0.380236 | 7.4:-4420649 | MS.gene054402:CDS |
| AGAAAGAAAGCGACTGCGTC+GGG | 0.394814 | 7.4:-4420961 | MS.gene054402:CDS |
| TCATAATCTCTATGTTTCAA+TGG | 0.398737 | 7.4:+4423422 | None:intergenic |
| AATTGAACTTACACTGTTGC+TGG | 0.398841 | 7.4:+4423796 | None:intergenic |
| CTTGCTCTGTAAAGCTTCCT+AGG | 0.401772 | 7.4:+4421357 | None:intergenic |
| TCAAGTACCTGTTGGCTTAG+TGG | 0.422359 | 7.4:+4422980 | None:intergenic |
| AGCAGTAGAAGAACCTGAAA+TGG | 0.433262 | 7.4:-4420674 | MS.gene054402:CDS |
| TCCACAGATCAGAGAGCGTT+GGG | 0.434413 | 7.4:-4422084 | MS.gene054402:intron |
| ATTCGGTTGAATTAGGCCGC+TGG | 0.437263 | 7.4:-4423700 | MS.gene054402:intron |
| CCCATCAAGGCAGCAACGTC+AGG | 0.440366 | 7.4:+4420649 | None:intergenic |
| TGCTCGTGAGCGTGAGAGAC+AGG | 0.449139 | 7.4:-4423626 | MS.gene054402:CDS |
| TGAACGTTCTTCTCTCAAAC+AGG | 0.469716 | 7.4:-4422046 | MS.gene054402:intron |
| TGTTGGCTTAGTGGTGCAAC+AGG | 0.472073 | 7.4:+4422989 | None:intergenic |
| GAAGGACTCCGCGAACTACT+TGG | 0.477593 | 7.4:-4422220 | MS.gene054402:CDS |
| TTCGGTTGAATTAGGCCGCT+GGG | 0.484855 | 7.4:-4423699 | MS.gene054402:intron |
| TTCAATGGCTTCCTCTGCAC+CGG | 0.489779 | 7.4:+4423437 | None:intergenic |
| TGTTGCACCACTAAGCCAAC+AGG | 0.512030 | 7.4:-4422987 | MS.gene054402:intron |
| GAAGAGAAAGCAAAACCTAA+AGG | 0.524374 | 7.4:-4423601 | MS.gene054402:intron |
| AAGAAAGAAAGCGACTGCGT+CGG | 0.529732 | 7.4:-4420962 | MS.gene054402:CDS |
| GGTTTGAAAATCTGAAGAAA+CGG | 0.530251 | 7.4:-4421385 | MS.gene054402:CDS |
| ATATATAGGTAGAGGTCCTC+CGG | 0.536652 | 7.4:-4423456 | MS.gene054402:intron |
| TTCCACAGATCAGAGAGCGT+TGG | 0.536771 | 7.4:-4422085 | MS.gene054402:intron |
| GTAGACCTTGAATCCCGCTT+GGG | 0.547442 | 7.4:-4423398 | MS.gene054402:CDS |
| GCTGCCTTGATGGGGTTTGG+AGG | 0.549348 | 7.4:-4420640 | MS.gene054402:CDS |
| AGTAGACCTTGAATCCCGCT+TGG | 0.550337 | 7.4:-4423399 | MS.gene054402:CDS |
| GTAGAGGTCCTCCGGTGCAG+AGG | 0.551585 | 7.4:-4423448 | MS.gene054402:CDS |
| AGTTTGTGAGTGCGTGGTGA+AGG | 0.552418 | 7.4:-4422238 | MS.gene054402:CDS |
| CTAGGAAGCTTTACAGAGCA+AGG | 0.559657 | 7.4:-4421356 | MS.gene054402:intron |
| AATGGCTTCCTCTGCACCGG+AGG | 0.560400 | 7.4:+4423440 | None:intergenic |
| CTGACGTTGCTGCCTTGATG+GGG | 0.560761 | 7.4:-4420648 | MS.gene054402:CDS |
| CTGAAGAAACGGAAAGACCT+AGG | 0.564143 | 7.4:-4421374 | MS.gene054402:CDS |
| ATTAAAACAGCAACAAGAAG+AGG | 0.569720 | 7.4:-4420985 | MS.gene054402:CDS |
| AATATGATCCAAGTAGTTCG+CGG | 0.573368 | 7.4:+4422212 | None:intergenic |
| AAAACCTCCAAACCCCATCA+AGG | 0.581455 | 7.4:+4420636 | None:intergenic |
| CTGCTCAGTTTGTGAGTGCG+TGG | 0.632386 | 7.4:-4422244 | MS.gene054402:CDS |
| GATGAACGCAGGTTCAGGAA+CGG | 0.633829 | 7.4:-4421406 | MS.gene054402:intron |
| TCGGTTGAATTAGGCCGCTG+GGG | 0.650254 | 7.4:-4423698 | MS.gene054402:intron |
| TGAACTTACACTGTTGCTGG+TGG | 0.666094 | 7.4:+4423799 | None:intergenic |
| GAATGTGTTGTCAACCCCAG+CGG | 0.671454 | 7.4:+4423684 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr7.4:4420920-4420939 | MS.gene054402:intron | 0.0% |
| !! | AATTTACCTAATAATAATTA+GGG | + | chr7.4:4422696-4422715 | None:intergenic | 10.0% |
| !! | TTCAAATTAATAATTTGATT+CGG | - | chr7.4:4420707-4420726 | MS.gene054402:intron | 10.0% |
| !! | ATATACATTATTAAATCCAA+AGG | + | chr7.4:4422144-4422163 | None:intergenic | 15.0% |
| !! | ATATATATATATATAGGTAG+AGG | - | chr7.4:4420960-4420979 | MS.gene054402:CDS | 15.0% |
| !! | ATTTACCTAATAATAATTAG+GGG | + | chr7.4:4422695-4422714 | None:intergenic | 15.0% |
| !! | CAATTTACCTAATAATAATT+AGG | + | chr7.4:4422697-4422716 | None:intergenic | 15.0% |
| !!! | AAATTTTAGAAATGATCTTA+GGG | - | chr7.4:4421985-4422004 | MS.gene054402:intron | 15.0% |
| !!! | ATTTTGATATTTACAGATTT+GGG | - | chr7.4:4422450-4422469 | MS.gene054402:intron | 15.0% |
| !!! | TAAATTTTAGAAATGATCTT+AGG | - | chr7.4:4421984-4422003 | MS.gene054402:intron | 15.0% |
| !!! | TGTTTATTTATTTCATTTTC+TGG | + | chr7.4:4422420-4422439 | None:intergenic | 15.0% |
| !!! | TTGATCTATAACTAAAATTT+TGG | - | chr7.4:4423214-4423233 | MS.gene054402:intron | 15.0% |
| !! | ATCAAAAAGATTATCCATAT+AGG | + | chr7.4:4422104-4422123 | None:intergenic | 20.0% |
| !! | CAAATCTGTAAATATCAAAA+TGG | + | chr7.4:4422451-4422470 | None:intergenic | 20.0% |
| !! | GATTTAATAATGTATATTGC+AGG | - | chr7.4:4422147-4422166 | MS.gene054402:intron | 20.0% |
| !! | TCAATTAGAATACAAAATCT+TGG | - | chr7.4:4423537-4423556 | MS.gene054402:intron | 20.0% |
| !!! | AACCTTTATTTCTTTTTGTT+GGG | - | chr7.4:4421569-4421588 | MS.gene054402:intron | 20.0% |
| !!! | ATTTTATGTTGTAGACTTTT+AGG | - | chr7.4:4421317-4421336 | MS.gene054402:intron | 20.0% |
| !!! | CATTTTGATATTTACAGATT+TGG | - | chr7.4:4422449-4422468 | MS.gene054402:intron | 20.0% |
| !!! | TAACCTTTATTTCTTTTTGT+TGG | - | chr7.4:4421568-4421587 | MS.gene054402:intron | 20.0% |
| !!! | TCTTTTTCCAAATTATATGT+GGG | - | chr7.4:4421773-4421792 | MS.gene054402:intron | 20.0% |
| ! | AAAATTCAATTTCCACACTA+AGG | + | chr7.4:4423391-4423410 | None:intergenic | 25.0% |
| ! | AAACCATCGACAATAAATAT+TGG | + | chr7.4:4420662-4420681 | None:intergenic | 25.0% |
| ! | AACCATCGACAATAAATATT+GGG | + | chr7.4:4420661-4420680 | None:intergenic | 25.0% |
| ! | AACTACTTGGATCATATTAA+TGG | - | chr7.4:4422217-4422236 | MS.gene054402:CDS | 25.0% |
| ! | AAGAAACTGTAATCTGAATA+CGG | + | chr7.4:4423513-4423532 | None:intergenic | 25.0% |
| ! | AATAAAAATCAAGTACCTGT+TGG | + | chr7.4:4421455-4421474 | None:intergenic | 25.0% |
| ! | AATAAAGCTTCTACAATTTC+AGG | + | chr7.4:4423170-4423189 | None:intergenic | 25.0% |
| ! | ACTTTAATGTCCATTATTCT+TGG | - | chr7.4:4423144-4423163 | MS.gene054402:intron | 25.0% |
| ! | ATATTGCAATGTCTAGAAAA+AGG | + | chr7.4:4421910-4421929 | None:intergenic | 25.0% |
| ! | ATTAGAATTCATAGACTAGA+AGG | + | chr7.4:4422860-4422879 | None:intergenic | 25.0% |
| ! | CATAACTCTGTTATATATCA+GGG | - | chr7.4:4422012-4422031 | MS.gene054402:intron | 25.0% |
| ! | CATGTTGAAATTTCAAATGT+TGG | - | chr7.4:4423326-4423345 | MS.gene054402:intron | 25.0% |
| ! | TATTGCAATGTCTAGAAAAA+GGG | + | chr7.4:4421909-4421928 | None:intergenic | 25.0% |
| ! | TCATAACTCTGTTATATATC+AGG | - | chr7.4:4422011-4422030 | MS.gene054402:intron | 25.0% |
| ! | TCATAATCTCTATGTTTCAA+TGG | + | chr7.4:4421005-4421024 | None:intergenic | 25.0% |
| ! | TTCTAGTCTATGAATTCTAA+TGG | - | chr7.4:4422859-4422878 | MS.gene054402:intron | 25.0% |
| !! | AAAAACTCAGGTATGTTTTA+AGG | - | chr7.4:4421049-4421068 | MS.gene054402:intron | 25.0% |
| !! | AACTTTGCTGGTTAAAAATA+TGG | - | chr7.4:4421647-4421666 | MS.gene054402:intron | 25.0% |
| !! | ACTTTGCTGGTTAAAAATAT+GGG | - | chr7.4:4421648-4421667 | MS.gene054402:intron | 25.0% |
| !! | CTCTTTTTCCAAATTATATG+TGG | - | chr7.4:4421772-4421791 | MS.gene054402:intron | 25.0% |
| !! | TGTGAAATTAGTTTACCTTT+AGG | + | chr7.4:4420841-4420860 | None:intergenic | 25.0% |
| !!! | ACCTTTATTTCTTTTTGTTG+GGG | - | chr7.4:4421570-4421589 | MS.gene054402:intron | 25.0% |
| !!! | ATCACTTTTAGAAAGATAGA+TGG | + | chr7.4:4423647-4423666 | None:intergenic | 25.0% |
| !!! | GCATATTTTCTTTGATTTTG+CGG | - | chr7.4:4422264-4422283 | MS.gene054402:intron | 25.0% |
| !!! | GTATTTGTGTACTTTGAAAT+TGG | - | chr7.4:4421477-4421496 | MS.gene054402:intron | 25.0% |
| !!! | TAATTTGATTCGGTTGAATT+AGG | - | chr7.4:4420717-4420736 | MS.gene054402:intron | 25.0% |
| !!! | TAGTATTTTTGACTACTTCT+AGG | - | chr7.4:4423278-4423297 | MS.gene054402:intron | 25.0% |
| !!! | TTAATTGCTACTTTGTGAAA+AGG | + | chr7.4:4423698-4423717 | None:intergenic | 25.0% |
| !!! | TTTGCTTTTTGATAAAACAC+TGG | - | chr7.4:4421196-4421215 | MS.gene054402:intron | 25.0% |
| !!! | TTTTTGCAGATTTTGATGAA+AGG | - | chr7.4:4423414-4423433 | MS.gene054402:CDS | 25.0% |
| AATAATAATTAGGGGAGAGA+AGG | + | chr7.4:4422687-4422706 | None:intergenic | 30.0% | |
| AATCTCCTTAATTGAAAGGT+CGG | + | chr7.4:4423196-4423215 | None:intergenic | 30.0% | |
| AGAAACCAAATGACACATAA+TGG | + | chr7.4:4422953-4422972 | None:intergenic | 30.0% | |
| ATAATAATTAGGGGAGAGAA+GGG | + | chr7.4:4422686-4422705 | None:intergenic | 30.0% | |
| ATAGGTTTCTTCTCTAGTAT+GGG | - | chr7.4:4422803-4422822 | MS.gene054402:intron | 30.0% | |
| ATCCCAATATTTATTGTCGA+TGG | - | chr7.4:4420656-4420675 | MS.gene054402:CDS | 30.0% | |
| ATTAAAACAGCAACAAGAAG+AGG | - | chr7.4:4423439-4423458 | MS.gene054402:CDS | 30.0% | |
| CAACTCTCTTCTATTATCTT+AGG | + | chr7.4:4423099-4423118 | None:intergenic | 30.0% | |
| CTAAGATAATAGAAGAGAGT+TGG | - | chr7.4:4423097-4423116 | MS.gene054402:intron | 30.0% | |
| GATCAATCTCCTTAATTGAA+AGG | + | chr7.4:4423200-4423219 | None:intergenic | 30.0% | |
| GGTTTGAAAATCTGAAGAAA+CGG | - | chr7.4:4423039-4423058 | MS.gene054402:intron | 30.0% | |
| TAAAGGTTATCAAGAGAGTA+AGG | + | chr7.4:4421557-4421576 | None:intergenic | 30.0% | |
| TAATAATGTATATTGCAGGC+TGG | - | chr7.4:4422151-4422170 | MS.gene054402:intron | 30.0% | |
| TCAAGCAATGTCAAAGATAA+TGG | + | chr7.4:4422890-4422909 | None:intergenic | 30.0% | |
| TCCCCAACAAAAAGAAATAA+AGG | + | chr7.4:4421574-4421593 | None:intergenic | 30.0% | |
| TCGGGAAAAGAAAAAAGAAA+AGG | - | chr7.4:4423481-4423500 | MS.gene054402:intron | 30.0% | |
| TCTCTCCCCTAATTATTATT+AGG | - | chr7.4:4422687-4422706 | MS.gene054402:intron | 30.0% | |
| TTAACGGTATGAACAAATCT+TGG | + | chr7.4:4421369-4421388 | None:intergenic | 30.0% | |
| TTGGAAAAAGAGAACTTTCA+GGG | + | chr7.4:4421764-4421783 | None:intergenic | 30.0% | |
| TTGTGATATTAATTGTCTCG+TGG | - | chr7.4:4421879-4421898 | MS.gene054402:intron | 30.0% | |
| TTTGGAAAAAGAGAACTTTC+AGG | + | chr7.4:4421765-4421784 | None:intergenic | 30.0% | |
| ! | AGAAACGTATGTAGTCTTTT+TGG | - | chr7.4:4422242-4422261 | MS.gene054402:CDS | 30.0% |
| ! | CAATTTTTGCATTCAGAAGA+AGG | - | chr7.4:4423726-4423745 | MS.gene054402:intron | 30.0% |
| ! | GATATTGTGTCATATTTTGC+AGG | - | chr7.4:4421404-4421423 | MS.gene054402:intron | 30.0% |
| !! | ACCTGATATCACTTTTATAG+AGG | + | chr7.4:4422476-4422495 | None:intergenic | 30.0% |
| !! | TTTATTTCTTTTTGTTGGGG+AGG | - | chr7.4:4421573-4421592 | MS.gene054402:intron | 30.0% |
| !!! | GTATGTTTGCTTTTTGAGTT+TGG | - | chr7.4:4421280-4421299 | MS.gene054402:intron | 30.0% |
| !!! | TCTTTTTATTTTCAGAACCC+AGG | + | chr7.4:4422499-4422518 | None:intergenic | 30.0% |
| AACTGACTATCAAACTTTGC+TGG | - | chr7.4:4421635-4421654 | MS.gene054402:intron | 35.0% | |
| AATAACCATGAGCAAAGTGA+CGG | + | chr7.4:4422310-4422329 | None:intergenic | 35.0% | |
| AATATGATCCAAGTAGTTCG+CGG | + | chr7.4:4422215-4422234 | None:intergenic | 35.0% | |
| AATTGAACTTACACTGTTGC+TGG | + | chr7.4:4420631-4420650 | None:intergenic | 35.0% | |
| AGTGAATGTCAAGGATCTAT+AGG | - | chr7.4:4421156-4421175 | MS.gene054402:intron | 35.0% | |
| ATAAAAGTGATATCAGGTCC+TGG | - | chr7.4:4422478-4422497 | MS.gene054402:intron | 35.0% | |
| CAATTTCAGGCCAAGAATAA+TGG | + | chr7.4:4423157-4423176 | None:intergenic | 35.0% | |
| CACAGGAATTTGCAAAACTT+TGG | + | chr7.4:4421692-4421711 | None:intergenic | 35.0% | |
| CATAGGTTTCTTCTCTAGTA+TGG | - | chr7.4:4422802-4422821 | MS.gene054402:intron | 35.0% | |
| CTCTTATCAGTACAGCTTAA+CGG | + | chr7.4:4421385-4421404 | None:intergenic | 35.0% | |
| GAAGAGAAAGCAAAACCTAA+AGG | - | chr7.4:4420823-4420842 | MS.gene054402:intron | 35.0% | |
| GATTATCCATATAGGATCCT+TGG | + | chr7.4:4422096-4422115 | None:intergenic | 35.0% | |
| GATTTATAACTGTCATGCAG+AGG | + | chr7.4:4422993-4423012 | None:intergenic | 35.0% | |
| GCCTCTATAAAAGTGATATC+AGG | - | chr7.4:4422472-4422491 | MS.gene054402:intron | 35.0% | |
| TAAAAGTGATATCAGGTCCT+GGG | - | chr7.4:4422479-4422498 | MS.gene054402:intron | 35.0% | |
| TAAATCTTTGTGATGAACGC+AGG | - | chr7.4:4423007-4423026 | MS.gene054402:intron | 35.0% | |
| TAGATCCTTGACATTCACTT+AGG | + | chr7.4:4421155-4421174 | None:intergenic | 35.0% | |
| TATATATGGGATGAGAAGAG+AGG | + | chr7.4:4422584-4422603 | None:intergenic | 35.0% | |
| TCAAACAGGTACAGTGATAT+AGG | - | chr7.4:4422392-4422411 | MS.gene054402:intron | 35.0% | |
| TGTCTGGATTACTTTCTTTC+AGG | - | chr7.4:4421075-4421094 | MS.gene054402:intron | 35.0% | |
| TTAAGCTGTGTATCCAAACA+GGG | - | chr7.4:4421129-4421148 | MS.gene054402:intron | 35.0% | |
| TTCAACCGACCTTTCAATTA+AGG | - | chr7.4:4423188-4423207 | MS.gene054402:intron | 35.0% | |
| ! | CAAAGTTTTGCAAATTCCTG+TGG | - | chr7.4:4421690-4421709 | MS.gene054402:intron | 35.0% |
| ! | CAATGTCAAAGATAATGGCA+TGG | + | chr7.4:4422885-4422904 | None:intergenic | 35.0% |
| ! | GTGTTCCATTATGTGTCATT+TGG | - | chr7.4:4422945-4422964 | MS.gene054402:intron | 35.0% |
| !!! | GTTGTAGACTTTTAGGTTGT+GGG | - | chr7.4:4421324-4421343 | MS.gene054402:intron | 35.0% |
| !!! | TGTTGTAGACTTTTAGGTTG+TGG | - | chr7.4:4421323-4421342 | MS.gene054402:intron | 35.0% |
| !!! | TTGTAGACTTTTAGGTTGTG+GGG | - | chr7.4:4421325-4421344 | MS.gene054402:intron | 35.0% |
| ACGGTATGAACAAATCTTGG+TGG | + | chr7.4:4421366-4421385 | None:intergenic | 40.0% | |
| AGCAGTAGAAGAACCTGAAA+TGG | - | chr7.4:4423750-4423769 | MS.gene054402:intron | 40.0% | |
| AGGTTATCAAGAGAGTAAGG+AGG | + | chr7.4:4421554-4421573 | None:intergenic | 40.0% | |
| ATATATAGGTAGAGGTCCTC+CGG | - | chr7.4:4420968-4420987 | MS.gene054402:CDS | 40.0% | |
| ATCAGAGAGCTAGACAGAAA+TGG | + | chr7.4:4423584-4423603 | None:intergenic | 40.0% | |
| GAAGGCTATCTTAAGCTGAA+TGG | + | chr7.4:4422842-4422861 | None:intergenic | 40.0% | |
| GAGAAGAAACCTATGAGATG+AGG | + | chr7.4:4422797-4422816 | None:intergenic | 40.0% | |
| GGACTTGCCCACATATAATT+TGG | + | chr7.4:4421783-4421802 | None:intergenic | 40.0% | |
| GTTAAGCTGTGTATCCAAAC+AGG | - | chr7.4:4421128-4421147 | MS.gene054402:intron | 40.0% | |
| TAATGGAACACATGCATGCA+TGG | + | chr7.4:4422936-4422955 | None:intergenic | 40.0% | |
| TCAGAGAGCTAGACAGAAAT+GGG | + | chr7.4:4423583-4423602 | None:intergenic | 40.0% | |
| TGAACGTTCTTCTCTCAAAC+AGG | - | chr7.4:4422378-4422397 | MS.gene054402:intron | 40.0% | |
| TGACAGAACATCAAAGTGTG+TGG | + | chr7.4:4423368-4423387 | None:intergenic | 40.0% | |
| TGCAACTTATGTAGCACCTT+TGG | - | chr7.4:4422125-4422144 | MS.gene054402:intron | 40.0% | |
| TGGAATCAGTTGGGACATTA+GGG | + | chr7.4:4422551-4422570 | None:intergenic | 40.0% | |
| ! | AGAGGGAGAGAGCATATATA+TGG | + | chr7.4:4422598-4422617 | None:intergenic | 40.0% |
| ! | ATACCTGAGTTTTTCCCAAG+CGG | + | chr7.4:4421043-4421062 | None:intergenic | 40.0% |
| ! | GAGGGAGAGAGCATATATAT+GGG | + | chr7.4:4422597-4422616 | None:intergenic | 40.0% |
| !! | AAAGCTTTGGCTGTGTTTTG+TGG | - | chr7.4:4421849-4421868 | MS.gene054402:intron | 40.0% |
| !! | AAGCTTTGGCTGTGTTTTGT+GGG | - | chr7.4:4421850-4421869 | MS.gene054402:intron | 40.0% |
| !! | TGATTTTGACAACCTTGCCA+AGG | - | chr7.4:4422076-4422095 | MS.gene054402:CDS | 40.0% |
| !!! | GTATGTTTTAAGGCTCTGTC+TGG | - | chr7.4:4421059-4421078 | MS.gene054402:intron | 40.0% |
| AAAACCTCCAAACCCCATCA+AGG | + | chr7.4:4423791-4423810 | None:intergenic | 45.0% | |
| AAGAAAGAAAGCGACTGCGT+CGG | - | chr7.4:4423462-4423481 | MS.gene054402:intron | 45.0% | |
| ACATTCACTTAGGCCCTGTT+TGG | + | chr7.4:4421145-4421164 | None:intergenic | 45.0% | |
| ACCTTGCCAAGGATCCTATA+TGG | - | chr7.4:4422087-4422106 | MS.gene054402:intron | 45.0% | |
| AGCGAGTGATCTTTCACCAT+TGG | - | chr7.4:4421814-4421833 | MS.gene054402:intron | 45.0% | |
| AGCTGAATGGTGCAGATTCA+AGG | + | chr7.4:4422829-4422848 | None:intergenic | 45.0% | |
| ATGGGATGAGAAGAGAGGAA+GGG | + | chr7.4:4422579-4422598 | None:intergenic | 45.0% | |
| ATGGTGAAAGATCACTCGCT+TGG | + | chr7.4:4421814-4421833 | None:intergenic | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | - | chr7.4:4421232-4421251 | MS.gene054402:intron | 45.0% | |
| CAAGCCATATCCCACTAAGT+GGG | + | chr7.4:4421246-4421265 | None:intergenic | 45.0% | |
| CTAGGAAGCTTTACAGAGCA+AGG | - | chr7.4:4423068-4423087 | MS.gene054402:intron | 45.0% | |
| CTGAAGAAACGGAAAGACCT+AGG | - | chr7.4:4423050-4423069 | MS.gene054402:intron | 45.0% | |
| CTGGAATCAGTTGGGACATT+AGG | + | chr7.4:4422552-4422571 | None:intergenic | 45.0% | |
| CTTGCTCTGTAAAGCTTCCT+AGG | + | chr7.4:4423070-4423089 | None:intergenic | 45.0% | |
| CTTTGTGAATGCTCTGCCAA+TGG | + | chr7.4:4421833-4421852 | None:intergenic | 45.0% | |
| GAACATCAAAGTGTGTGGAC+TGG | + | chr7.4:4423363-4423382 | None:intergenic | 45.0% | |
| GAGAAGAAGCCTATAAGACG+AGG | + | chr7.4:4422758-4422777 | None:intergenic | 45.0% | |
| GATGTTCTGTCACCTTAGTG+TGG | - | chr7.4:4423376-4423395 | MS.gene054402:intron | 45.0% | |
| GCAAATTCCTGTGGACTTGT+CGG | - | chr7.4:4421699-4421718 | MS.gene054402:intron | 45.0% | |
| TATGGGATGAGAAGAGAGGA+AGG | + | chr7.4:4422580-4422599 | None:intergenic | 45.0% | |
| TCAGGCTATCTGCTGCTATA+AGG | - | chr7.4:4421093-4421112 | MS.gene054402:intron | 45.0% | |
| TCCATATAGGATCCTTGGCA+AGG | + | chr7.4:4422091-4422110 | None:intergenic | 45.0% | |
| TGAACTTACACTGTTGCTGG+TGG | + | chr7.4:4420628-4420647 | None:intergenic | 45.0% | |
| TGATCCCACTTAGTGGGATA+TGG | - | chr7.4:4421239-4421258 | MS.gene054402:intron | 45.0% | |
| TGGGCACACTCTAATTGTCT+AGG | + | chr7.4:4422526-4422545 | None:intergenic | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | - | chr7.4:4421233-4421252 | MS.gene054402:intron | 45.0% | |
| TTGCATCTCATAGTCCGATC+TGG | - | chr7.4:4422714-4422733 | MS.gene054402:intron | 45.0% | |
| TTTGTGATGAACGCAGGTTC+AGG | - | chr7.4:4423013-4423032 | MS.gene054402:intron | 45.0% | |
| ! | AATTGCCGTCACTTTGCTCA+TGG | - | chr7.4:4422302-4422321 | MS.gene054402:intron | 45.0% |
| ! | GCAGAGCATTCACAAAGCTT+TGG | - | chr7.4:4421836-4421855 | MS.gene054402:intron | 45.0% |
| ! | TACCTGAGTTTTTCCCAAGC+GGG | + | chr7.4:4421042-4421061 | None:intergenic | 45.0% |
| ! | TGAACAAATCTTGGTGGCAG+TGG | + | chr7.4:4421360-4421379 | None:intergenic | 45.0% |
| ! | TGATGGGGTTTGGAGGTTTT+CGG | - | chr7.4:4423791-4423810 | MS.gene054402:intron | 45.0% |
| ! | TTTTTCCCAAGCGGGATTCA+AGG | + | chr7.4:4421034-4421053 | None:intergenic | 45.0% |
| !! | AGATCACTCGCTTGGTCTTT+TGG | + | chr7.4:4421806-4421825 | None:intergenic | 45.0% |
| !! | ATCACTCGCTTGGTCTTTTG+GGG | + | chr7.4:4421804-4421823 | None:intergenic | 45.0% |
| !! | GATCACTCGCTTGGTCTTTT+GGG | + | chr7.4:4421805-4421824 | None:intergenic | 45.0% |
| !! | TCAAGTACCTGTTGGCTTAG+TGG | + | chr7.4:4421447-4421466 | None:intergenic | 45.0% |
| !!! | TTTTTGTTGGGGAGGTGTTG+CGG | - | chr7.4:4421581-4421600 | MS.gene054402:intron | 45.0% |
| AAGGGTAGGCTGGAATCAGT+TGG | + | chr7.4:4422561-4422580 | None:intergenic | 50.0% | |
| AATTCCTGTGGACTTGTCGG+TGG | - | chr7.4:4421702-4421721 | MS.gene054402:intron | 50.0% | |
| AGAAAGAAAGCGACTGCGTC+GGG | - | chr7.4:4423463-4423482 | MS.gene054402:intron | 50.0% | |
| AGGGTAGGCTGGAATCAGTT+GGG | + | chr7.4:4422560-4422579 | None:intergenic | 50.0% | |
| AGTAGACCTTGAATCCCGCT+TGG | - | chr7.4:4421025-4421044 | MS.gene054402:intron | 50.0% | |
| AGTTTGTGAGTGCGTGGTGA+AGG | - | chr7.4:4422186-4422205 | MS.gene054402:intron | 50.0% | |
| ATCCCGCTTGGGAAAAACTC+AGG | - | chr7.4:4421037-4421056 | MS.gene054402:intron | 50.0% | |
| ATTCGGTTGAATTAGGCCGC+TGG | - | chr7.4:4420724-4420743 | MS.gene054402:intron | 50.0% | |
| CAGGGCCTAAGTGAATGTCA+AGG | - | chr7.4:4421147-4421166 | MS.gene054402:intron | 50.0% | |
| CAGTTGGGACATTAGGGACT+GGG | + | chr7.4:4422545-4422564 | None:intergenic | 50.0% | |
| CCAAGCCATATCCCACTAAG+TGG | + | chr7.4:4421247-4421266 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATATGGCT+TGG | - | chr7.4:4421244-4421263 | MS.gene054402:intron | 50.0% | |
| GAATGTGTTGTCAACCCCAG+CGG | + | chr7.4:4420743-4420762 | None:intergenic | 50.0% | |
| GAGAGCTAGACAGAAATGGG+AGG | + | chr7.4:4423580-4423599 | None:intergenic | 50.0% | |
| GATGAACGCAGGTTCAGGAA+CGG | - | chr7.4:4423018-4423037 | MS.gene054402:intron | 50.0% | |
| GATGAGAAGAGAGGAAGGGT+AGG | + | chr7.4:4422575-4422594 | None:intergenic | 50.0% | |
| GCAACGTCAGGATCCATTTC+AGG | + | chr7.4:4423766-4423785 | None:intergenic | 50.0% | |
| GTAGACCTTGAATCCCGCTT+GGG | - | chr7.4:4421026-4421045 | MS.gene054402:intron | 50.0% | |
| TAGAGTAGAGAGGACGTGTG+CGG | + | chr7.4:4422642-4422661 | None:intergenic | 50.0% | |
| TCAGTTGGGACATTAGGGAC+TGG | + | chr7.4:4422546-4422565 | None:intergenic | 50.0% | |
| TCCTAGAGGCTAGAGTAGAG+AGG | + | chr7.4:4422652-4422671 | None:intergenic | 50.0% | |
| TCCTCTCTACTCTAGCCTCT+AGG | - | chr7.4:4422648-4422667 | MS.gene054402:intron | 50.0% | |
| TCTTCTCTAGCCCTCCTCTT+GGG | - | chr7.4:4422771-4422790 | MS.gene054402:intron | 50.0% | |
| TGTTGCACCACTAAGCCAAC+AGG | - | chr7.4:4421437-4421456 | MS.gene054402:intron | 50.0% | |
| TTCAATGGCTTCCTCTGCAC+CGG | + | chr7.4:4420990-4421009 | None:intergenic | 50.0% | |
| TTCGGTTGAATTAGGCCGCT+GGG | - | chr7.4:4420725-4420744 | MS.gene054402:intron | 50.0% | |
| TTCTTCTCTAGCCCTCCTCT+TGG | - | chr7.4:4422770-4422789 | MS.gene054402:intron | 50.0% | |
| ! | TTCCACAGATCAGAGAGCGT+TGG | - | chr7.4:4422339-4422358 | MS.gene054402:intron | 50.0% |
| !! | TCCACAGATCAGAGAGCGTT+GGG | - | chr7.4:4422340-4422359 | MS.gene054402:intron | 50.0% |
| !! | TGTTGGCTTAGTGGTGCAAC+AGG | + | chr7.4:4421438-4421457 | None:intergenic | 50.0% |
| AGAAGAGAGGAAGGGTAGGC+TGG | + | chr7.4:4422571-4422590 | None:intergenic | 55.0% | |
| ATAAGACGAGGCCCAAGAGG+AGG | + | chr7.4:4422746-4422765 | None:intergenic | 55.0% | |
| ATGAGATGAGGCCCAAGAGG+AGG | + | chr7.4:4422785-4422804 | None:intergenic | 55.0% | |
| CCTATAAGACGAGGCCCAAG+AGG | + | chr7.4:4422749-4422768 | None:intergenic | 55.0% | |
| CCTATGAGATGAGGCCCAAG+AGG | + | chr7.4:4422788-4422807 | None:intergenic | 55.0% | |
| CCTCTTGGGCCTCATCTCAT+AGG | - | chr7.4:4422785-4422804 | MS.gene054402:intron | 55.0% | |
| CCTCTTGGGCCTCGTCTTAT+AGG | - | chr7.4:4422746-4422765 | MS.gene054402:intron | 55.0% | |
| CCTGACGTTGCTGCCTTGAT+GGG | - | chr7.4:4423775-4423794 | MS.gene054402:intron | 55.0% | |
| CTGACGTTGCTGCCTTGATG+GGG | - | chr7.4:4423776-4423795 | MS.gene054402:intron | 55.0% | |
| CTGCTCAGTTTGTGAGTGCG+TGG | - | chr7.4:4422180-4422199 | MS.gene054402:intron | 55.0% | |
| GAAGGACTCCGCGAACTACT+TGG | - | chr7.4:4422204-4422223 | MS.gene054402:CDS | 55.0% | |
| GGGTGTGACTCGTTTCCTAG+AGG | + | chr7.4:4422666-4422685 | None:intergenic | 55.0% | |
| GTAACCACCGACAAGTCCAC+AGG | + | chr7.4:4421709-4421728 | None:intergenic | 55.0% | |
| GTTGCTGCCTTGATGGGGTT+TGG | - | chr7.4:4423781-4423800 | MS.gene054402:intron | 55.0% | |
| TAAGACGAGGCCCAAGAGGA+GGG | + | chr7.4:4422745-4422764 | None:intergenic | 55.0% | |
| TCCTGACGTTGCTGCCTTGA+TGG | - | chr7.4:4423774-4423793 | MS.gene054402:intron | 55.0% | |
| TCGGTTGAATTAGGCCGCTG+GGG | - | chr7.4:4420726-4420745 | MS.gene054402:intron | 55.0% | |
| TGAGATGAGGCCCAAGAGGA+GGG | + | chr7.4:4422784-4422803 | None:intergenic | 55.0% | |
| TGCACTGTGGGAGAGAGAGA+GGG | + | chr7.4:4422615-4422634 | None:intergenic | 55.0% | |
| AAGACGAGGCCCAAGAGGAG+GGG | + | chr7.4:4422744-4422763 | None:intergenic | 60.0% | |
| AATGGCTTCCTCTGCACCGG+AGG | + | chr7.4:4420987-4421006 | None:intergenic | 60.0% | |
| CCCATCAAGGCAGCAACGTC+AGG | + | chr7.4:4423778-4423797 | None:intergenic | 60.0% | |
| GCCCAACGCTCTCTGATCTG+TGG | + | chr7.4:4422344-4422363 | None:intergenic | 60.0% | |
| GCTGCCTTGATGGGGTTTGG+AGG | - | chr7.4:4423784-4423803 | MS.gene054402:intron | 60.0% | |
| GTGCACTGTGGGAGAGAGAG+AGG | + | chr7.4:4422616-4422635 | None:intergenic | 60.0% | |
| TGCTCGTGAGCGTGAGAGAC+AGG | - | chr7.4:4420798-4420817 | MS.gene054402:intron | 60.0% | |
| !! | GGGGAGGTGTTGCGGCTTAT+GGG | - | chr7.4:4421589-4421608 | MS.gene054402:intron | 60.0% |
| !! | TGGGGAGGTGTTGCGGCTTA+TGG | - | chr7.4:4421588-4421607 | MS.gene054402:intron | 60.0% |
| ATCTGGCGCACCCCTCCTCT+TGG | - | chr7.4:4422731-4422750 | MS.gene054402:intron | 65.0% | |
| GTAGAGAGGACGTGTGCGGC+AGG | + | chr7.4:4422638-4422657 | None:intergenic | 65.0% | |
| GTAGAGGTCCTCCGGTGCAG+AGG | - | chr7.4:4420976-4420995 | MS.gene054402:CDS | 65.0% | |
| GTGTGCGGCAGGTGCACTGT+GGG | + | chr7.4:4422627-4422646 | None:intergenic | 65.0% | |
| TCTGGCGCACCCCTCCTCTT+GGG | - | chr7.4:4422732-4422751 | MS.gene054402:intron | 65.0% | |
| ! | AGAGGAGGGGTGCGCCAGAT+CGG | + | chr7.4:4422731-4422750 | None:intergenic | 65.0% |
| CGTGTGCGGCAGGTGCACTG+TGG | + | chr7.4:4422628-4422647 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4420615 | 4423831 | 4420615 | ID=MS.gene054402 |
| chr7.4 | mRNA | 4420615 | 4423831 | 4420615 | ID=MS.gene054402.t1;Parent=MS.gene054402 |
| chr7.4 | exon | 4423808 | 4423831 | 4423808 | ID=MS.gene054402.t1.exon1;Parent=MS.gene054402.t1 |
| chr7.4 | CDS | 4423808 | 4423831 | 4423808 | ID=cds.MS.gene054402.t1;Parent=MS.gene054402.t1 |
| chr7.4 | exon | 4423602 | 4423707 | 4423602 | ID=MS.gene054402.t1.exon2;Parent=MS.gene054402.t1 |
| chr7.4 | CDS | 4423602 | 4423707 | 4423602 | ID=cds.MS.gene054402.t1;Parent=MS.gene054402.t1 |
| chr7.4 | exon | 4423388 | 4423470 | 4423388 | ID=MS.gene054402.t1.exon3;Parent=MS.gene054402.t1 |
| chr7.4 | CDS | 4423388 | 4423470 | 4423388 | ID=cds.MS.gene054402.t1;Parent=MS.gene054402.t1 |
| chr7.4 | exon | 4422988 | 4423020 | 4422988 | ID=MS.gene054402.t1.exon4;Parent=MS.gene054402.t1 |
| chr7.4 | CDS | 4422988 | 4423020 | 4422988 | ID=cds.MS.gene054402.t1;Parent=MS.gene054402.t1 |
| chr7.4 | exon | 4422199 | 4422277 | 4422199 | ID=MS.gene054402.t1.exon5;Parent=MS.gene054402.t1 |
| chr7.4 | CDS | 4422199 | 4422277 | 4422199 | ID=cds.MS.gene054402.t1;Parent=MS.gene054402.t1 |
| chr7.4 | exon | 4422047 | 4422099 | 4422047 | ID=MS.gene054402.t1.exon6;Parent=MS.gene054402.t1 |
| chr7.4 | CDS | 4422047 | 4422099 | 4422047 | ID=cds.MS.gene054402.t1;Parent=MS.gene054402.t1 |
| chr7.4 | exon | 4421357 | 4421417 | 4421357 | ID=MS.gene054402.t1.exon7;Parent=MS.gene054402.t1 |
| chr7.4 | CDS | 4421357 | 4421417 | 4421357 | ID=cds.MS.gene054402.t1;Parent=MS.gene054402.t1 |
| chr7.4 | exon | 4420944 | 4421023 | 4420944 | ID=MS.gene054402.t1.exon8;Parent=MS.gene054402.t1 |
| chr7.4 | CDS | 4420944 | 4421023 | 4420944 | ID=cds.MS.gene054402.t1;Parent=MS.gene054402.t1 |
| chr7.4 | exon | 4420615 | 4420704 | 4420615 | ID=MS.gene054402.t1.exon9;Parent=MS.gene054402.t1 |
| chr7.4 | CDS | 4420615 | 4420704 | 4420615 | ID=cds.MS.gene054402.t1;Parent=MS.gene054402.t1 |
| Gene Sequence |
| Protein sequence |
