AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054510.t1 MTR_7g445710 85.987 471 47 3 2 453 73 543 0.0 792
MS.gene054510.t1 MTR_7g445530 85.034 441 47 3 2 423 73 513 0.0 729
MS.gene054510.t1 MTR_7g450730 78.801 467 55 5 1 453 69 505 0.0 712
MS.gene054510.t1 MTR_5g013420 43.203 537 193 13 6 453 576 1089 3.30e-125 390
MS.gene054510.t1 MTR_5g013420 43.017 537 194 13 6 453 576 1089 9.63e-124 386
MS.gene054510.t1 MTR_4g010830 41.088 533 209 11 6 453 468 980 8.14e-117 365
MS.gene054510.t1 MTR_4g010550 39.752 483 181 12 39 453 24 464 3.46e-100 308
MS.gene054510.t1 MTR_7g445810 77.128 188 31 1 3 178 87 274 9.49e-89 271
MS.gene054510.t1 MTR_7g445600 74.214 159 27 1 2 146 69 227 5.84e-71 229
MS.gene054510.t1 MTR_7g445600 62.130 169 13 1 255 423 239 356 1.15e-59 199
MS.gene054510.t1 MTR_1g048950 31.330 549 224 15 10 453 33 533 1.06e-65 221
MS.gene054510.t1 MTR_3g011440 29.725 545 258 16 7 448 137 659 1.88e-58 203
MS.gene054510.t1 MTR_7g084090 31.717 495 225 14 57 453 278 757 3.70e-58 204
MS.gene054510.t1 MTR_8g042750 30.545 550 254 21 2 448 159 683 4.38e-57 200
MS.gene054510.t1 MTR_8g070075 30.444 473 223 14 39 422 293 748 2.93e-55 196
MS.gene054510.t1 MTR_6g061270 31.250 512 239 15 39 453 199 694 6.16e-55 194
MS.gene054510.t1 MTR_8g070070 29.684 475 224 15 39 422 300 755 8.94e-54 192
MS.gene054510.t1 MTR_7g088370 30.427 539 247 19 4 448 196 700 2.65e-53 190
MS.gene054510.t1 MTR_8g071030 30.672 476 218 15 39 422 280 735 2.09e-51 185
MS.gene054510.t1 MTR_6g044690 28.755 466 229 15 42 422 115 562 3.93e-49 176
MS.gene054510.t1 MTR_1g035420 29.079 478 234 14 39 429 192 651 9.41e-49 177
MS.gene054510.t1 MTR_6g061200 29.492 512 219 14 39 453 199 665 1.22e-47 174
MS.gene054510.t1 MTR_0376s0030 28.821 458 214 18 53 422 127 560 2.88e-45 166
MS.gene054510.t1 MTR_6g043960 28.539 445 236 16 42 422 54 480 9.40e-43 157
MS.gene054510.t1 MTR_7g052480 32.997 297 152 9 194 453 270 556 6.75e-40 150
MS.gene054510.t1 MTR_1g035400 28.067 481 239 14 39 430 109 571 5.48e-38 145
MS.gene054510.t1 MTR_2g054460 26.977 430 234 15 42 422 64 462 7.91e-34 132
MS.gene054510.t1 MTR_8g078490 36.735 196 92 4 258 453 1090 1253 6.86e-32 129
MS.gene054510.t1 MTR_5g018850 35.859 198 91 5 258 453 1344 1507 1.14e-29 123
MS.gene054510.t1 MTR_4g132610 35.714 196 94 4 258 453 884 1047 4.77e-29 121
MS.gene054510.t1 MTR_8g078505 34.928 209 98 7 243 448 360 533 1.18e-25 110
MS.gene054510.t1 MTR_7g084090 28.212 358 155 11 57 318 278 629 3.18e-24 106
MS.gene054510.t1 MTR_1g080340 29.577 213 109 7 245 451 407 584 3.95e-18 87.4
MS.gene054510.t1 MTR_1g069570 30.000 210 105 8 245 448 568 741 7.07e-17 84.0
MS.gene054510.t1 MTR_7g098390 28.934 197 101 7 258 448 534 697 6.27e-12 68.2
MS.gene054510.t1 MTR_6g027690 24.771 218 126 9 236 452 239 419 2.13e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054510.t1 AT2G35160 40.993 544 185 15 1 453 260 758 1.08e-112 349
MS.gene054510.t1 AT2G35160 40.993 544 185 15 1 453 296 794 1.97e-112 349
MS.gene054510.t1 AT2G35160 40.993 544 185 15 1 453 296 794 1.97e-112 349
MS.gene054510.t1 AT2G35160 40.993 544 185 15 1 453 296 794 1.97e-112 349
MS.gene054510.t1 AT2G35160 40.993 544 185 15 1 453 296 794 1.97e-112 349
MS.gene054510.t1 AT2G22740 39.479 537 215 15 11 453 270 790 7.20e-106 332
MS.gene054510.t1 AT2G22740 39.479 537 215 15 11 453 270 790 7.20e-106 332
MS.gene054510.t1 AT5G13960 32.271 502 230 15 48 453 3 490 1.41e-58 200
MS.gene054510.t1 AT5G13960 32.271 502 230 15 48 453 137 624 1.53e-57 200
MS.gene054510.t1 AT1G73100 29.602 527 254 17 14 448 163 664 1.52e-54 193
MS.gene054510.t1 AT5G04940 30.642 483 221 16 56 448 207 665 2.13e-52 187
MS.gene054510.t1 AT5G04940 30.642 483 221 16 56 448 207 665 2.13e-52 187
MS.gene054510.t1 AT2G33290 27.907 473 231 13 39 422 186 637 5.55e-43 160
MS.gene054510.t1 AT2G33290 27.907 473 231 13 39 422 186 637 5.55e-43 160
MS.gene054510.t1 AT2G33290 27.907 473 231 13 39 422 186 637 5.55e-43 160
MS.gene054510.t1 AT2G33290 27.907 473 231 13 39 422 186 637 5.55e-43 160
MS.gene054510.t1 AT4G13460 28.099 484 243 12 26 422 171 636 6.76e-43 160
MS.gene054510.t1 AT4G13460 28.099 484 243 12 26 422 171 636 6.76e-43 160
MS.gene054510.t1 AT2G24740 28.998 469 227 16 59 448 309 750 1.35e-40 155
MS.gene054510.t1 AT1G17770 26.978 493 233 18 56 448 223 688 1.78e-37 145
MS.gene054510.t1 AT2G23740 31.937 191 101 4 258 448 1209 1370 1.09e-23 105
MS.gene054510.t1 AT2G23740 31.937 191 101 4 258 448 1216 1377 1.18e-23 105
MS.gene054510.t1 AT2G23740 31.937 191 101 4 258 448 1216 1377 1.18e-23 105
MS.gene054510.t1 AT2G23740 31.937 191 101 4 258 448 1216 1377 1.18e-23 105
MS.gene054510.t1 AT5G47150 37.500 176 77 5 39 188 156 324 1.12e-19 90.1
MS.gene054510.t1 AT5G47160 33.641 217 101 6 4 184 198 407 1.96e-19 90.5
MS.gene054510.t1 AT5G47160 33.641 217 101 6 4 184 198 407 1.96e-19 90.5
MS.gene054510.t1 AT5G47160 33.641 217 101 6 4 184 198 407 1.96e-19 90.5
MS.gene054510.t1 AT3G04380 32.057 209 108 8 245 451 257 433 5.36e-18 86.7
MS.gene054510.t1 AT3G04380 32.057 209 108 8 245 451 241 417 5.44e-18 86.3
MS.gene054510.t1 AT3G04380 32.057 209 108 8 245 451 257 433 5.54e-18 86.7
MS.gene054510.t1 AT3G04380 32.057 209 108 8 245 451 268 444 6.70e-18 86.3
MS.gene054510.t1 AT3G04380 32.057 209 108 8 245 451 284 460 6.79e-18 86.3
MS.gene054510.t1 AT3G04380 32.057 209 108 8 245 451 284 460 7.18e-18 86.3
MS.gene054510.t1 AT3G03750 28.205 195 112 5 258 452 183 349 1.52e-14 75.1
MS.gene054510.t1 AT1G04050 29.126 206 109 9 245 448 444 614 9.92e-14 73.9
MS.gene054510.t1 AT1G04050 27.184 206 113 7 245 448 548 718 1.05e-13 73.9
MS.gene054510.t1 AT1G04050 27.184 206 113 7 245 448 548 718 1.05e-13 73.9
MS.gene054510.t1 AT2G23740 32.258 124 59 3 258 381 1216 1314 1.13e-12 70.9
MS.gene054510.t1 AT2G23740 32.258 124 59 3 258 381 1216 1314 1.13e-12 70.9

Find 81 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAAAGTCGAATCTATT+TGG 0.122230 7.4:-55131604 MS.gene054510:CDS
TTTACCAGTTGAAGCTTCTA+AGG 0.214214 7.4:+55131055 None:intergenic
ACAAAAGTGTTCGTTTATAA+AGG 0.235352 7.4:-55131749 MS.gene054510:CDS
GATGAGTATTTATTTAATAT+TGG 0.247972 7.4:-55131158 MS.gene054510:CDS
AACATTTCGAGCAAACAAAT+TGG 0.261209 7.4:+55130938 None:intergenic
AACTTTATAATAACTCTAAT+AGG 0.276626 7.4:+55131689 None:intergenic
ACCATTGATGCTGCTAAGTA+TGG 0.290913 7.4:-55130996 MS.gene054510:CDS
CGAGTAATGTATTGAAAATA+TGG 0.296319 7.4:+55131446 None:intergenic
TTATAAAGTCGAATCTATTT+GGG 0.319297 7.4:-55131603 MS.gene054510:CDS
TCAGAGAATGCAATTCCTTC+TGG 0.338329 7.4:-55131248 MS.gene054510:CDS
GAATCTTCGAAAAGCCATTC+AGG 0.347836 7.4:+55131413 None:intergenic
TCTCATTGATTACGTGATAA+AGG 0.363505 7.4:-55131828 MS.gene054510:CDS
CTCGTAACATTTATCCTGAA+TGG 0.372209 7.4:-55131427 MS.gene054510:CDS
CAAAAGTGTTCGTTTATAAA+GGG 0.375293 7.4:-55131748 MS.gene054510:CDS
AAGAAAGTTAAAACAACATT+AGG 0.375506 7.4:-55132058 MS.gene054510:CDS
AGGTGAGATTATTGAAGATC+AGG 0.383100 7.4:-55131204 MS.gene054510:CDS
TTGTCACCTACTTCAATTCC+AGG 0.384331 7.4:+55131905 None:intergenic
AGAACCCGTGACACTTTGAT+AGG 0.402578 7.4:+55131980 None:intergenic
TTCATCTATGGTTGATAGTA+AGG 0.413030 7.4:-55131096 MS.gene054510:CDS
GTGGTTAATCGTATAGATTC+TGG 0.413281 7.4:-55131476 MS.gene054510:CDS
GGTGGTGGTGCACGTGGTGG+AGG 0.414640 7.4:-55131650 MS.gene054510:CDS
GGTGAGGTGTATTGTTACTA+TGG 0.435582 7.4:-55131629 MS.gene054510:CDS
ACATTTCGAGCAAACAAATT+GGG 0.449844 7.4:+55130939 None:intergenic
ATACGATTAACCACACATAT+AGG 0.451047 7.4:+55131485 None:intergenic
CCCTCCACTCTTAAGAGCAC+AGG 0.461039 7.4:+55131352 None:intergenic
GTGGGAGGAGGATTCATCTA+TGG 0.463351 7.4:-55131108 MS.gene054510:CDS
TGGCAAGAACTCAACGTTGT+TGG 0.468798 7.4:-55131872 MS.gene054510:CDS
GATCAAGTGATTGATTCAAA+TGG 0.480841 7.4:-55130813 MS.gene054510:CDS
ACCATACTTAGCAGCATCAA+TGG 0.496537 7.4:+55130995 None:intergenic
AAAATTATTGGAAATGTCCC+TGG 0.496911 7.4:-55131923 MS.gene054510:CDS
CAACCCTTAGAAGCTTCAAC+TGG 0.499229 7.4:-55131059 MS.gene054510:CDS
TTTCTTTCTTCTTGAGTCAT+CGG 0.503960 7.4:+55132075 None:intergenic
CAAGACTAAGGCGAAAGGAT+GGG 0.513493 7.4:-55131279 MS.gene054510:CDS
AAACTCGGTAACGAATTTAC+CGG 0.517987 7.4:-55132013 MS.gene054510:CDS
ATAAAGTTTAATTCAAAGAA+CGG 0.520311 7.4:-55131674 MS.gene054510:CDS
AAGACGAAAGCATGTTATTG+TGG 0.528019 7.4:-55130783 MS.gene054510:CDS
TAGGTGACAAGTTTCAGTAT+TGG 0.528561 7.4:-55131892 MS.gene054510:CDS
TCAAGACTAAGGCGAAAGGA+TGG 0.530216 7.4:-55131280 MS.gene054510:CDS
AGAAGCTTCAACTGGTAAAG+AGG 0.530368 7.4:-55131051 MS.gene054510:CDS
GCCTGTGCTCTTAAGAGTGG+AGG 0.530694 7.4:-55131353 MS.gene054510:CDS
TTACCAGTTGAAGCTTCTAA+GGG 0.535885 7.4:+55131056 None:intergenic
GGTCAATAGTTCGTGGGAGG+AGG 0.540429 7.4:-55131120 MS.gene054510:CDS
AAGACTAAGGCGAAAGGATG+GGG 0.542189 7.4:-55131278 MS.gene054510:CDS
AATTCAAAGAACGGTGGTGG+TGG 0.550993 7.4:-55131665 MS.gene054510:CDS
GGTGGTGGTGGTGCACGTGG+TGG 0.552190 7.4:-55131653 MS.gene054510:CDS
TTTGATAGGAAGCGCGTCGC+CGG 0.553874 7.4:+55131994 None:intergenic
TTTGTTATAGATATTTCCAA+TGG 0.556582 7.4:-55131521 MS.gene054510:CDS
CTAAGTATGGTAACGTGGCA+AGG 0.558339 7.4:-55130983 MS.gene054510:CDS
ATTGATGATCGATGTGATAG+TGG 0.558469 7.4:-55131026 MS.gene054510:CDS
CGCTTCCTATCAAAGTGTCA+CGG 0.559927 7.4:-55131985 MS.gene054510:CDS
ACTATCACATCGATCATCAA+TGG 0.565161 7.4:+55131028 None:intergenic
TGTGCTCTCTGTGGAAAACT+CGG 0.567842 7.4:-55132028 MS.gene054510:CDS
TTTAATTCAAAGAACGGTGG+TGG 0.569178 7.4:-55131668 MS.gene054510:CDS
AACGGTGGTGGTGGTGCACG+TGG 0.573546 7.4:-55131656 MS.gene054510:CDS
TTTGCCTGTGCTCTTAAGAG+TGG 0.575325 7.4:-55131356 MS.gene054510:CDS
TGGTGCACGTGGTGGAGGTG+AGG 0.581579 7.4:-55131645 MS.gene054510:CDS
CCTGTGCTCTTAAGAGTGGA+GGG 0.588175 7.4:-55131352 MS.gene054510:CDS
AAAGTCAGCTCATTCATGCT+CGG 0.596521 7.4:+55130855 None:intergenic
TTCACAAGGTCAATAGTTCG+TGG 0.597547 7.4:-55131127 MS.gene054510:CDS
GCTTCCTATCAAAGTGTCAC+GGG 0.597827 7.4:-55131984 MS.gene054510:CDS
TTTACGATGATGATGATCTG+AGG 0.605700 7.4:-55130914 MS.gene054510:CDS
GAGGCAAGTTCATTCACGAT+GGG 0.608632 7.4:-55131949 MS.gene054510:CDS
AATCTCATCAATACAGTCGA+CGG 0.610597 7.4:+55130745 None:intergenic
ATGATCGATGTGATAGTGGT+AGG 0.614728 7.4:-55131022 MS.gene054510:CDS
TATTGGCAATTATATTCACA+AGG 0.615507 7.4:-55131141 MS.gene054510:CDS
TCACAAGGTCAATAGTTCGT+GGG 0.615584 7.4:-55131126 MS.gene054510:CDS
AATGTCCCTGGAATTGAAGT+AGG 0.621360 7.4:-55131911 MS.gene054510:CDS
TAATCGTATAGATTCTGGCA+AGG 0.632162 7.4:-55131471 MS.gene054510:CDS
AGAGGCAAGTTCATTCACGA+TGG 0.640375 7.4:-55131950 MS.gene054510:CDS
TGTCACCTACTTCAATTCCA+GGG 0.640833 7.4:+55131906 None:intergenic
TCACAAATAAAACTTCCAGA+AGG 0.644047 7.4:+55131233 None:intergenic
GAGTCATCGGAAGTCAAAGA+CGG 0.650400 7.4:+55132088 None:intergenic
AGAACATTTACGCCCAACAG+AGG 0.655904 7.4:+55131391 None:intergenic
GGTAACTTCTGTGCTCTCTG+TGG 0.656207 7.4:-55132037 MS.gene054510:CDS
CAAGGTCAATAGTTCGTGGG+AGG 0.659849 7.4:-55131123 MS.gene054510:CDS
AGAAGCTGTTCCTATATGTG+TGG 0.665038 7.4:-55131495 MS.gene054510:CDS
TCACGGGTTCTAAAACAAAG+AGG 0.679698 7.4:-55131968 MS.gene054510:CDS
AAGTTTAATTCAAAGAACGG+TGG 0.694907 7.4:-55131671 MS.gene054510:CDS
ACAAATTGGGAGAACAACTG+TGG 0.712839 7.4:+55130952 None:intergenic
GCTGCATATAGCATGATGTG+TGG 0.717627 7.4:+55130888 None:intergenic
TGCTGCTAAGTATGGTAACG+TGG 0.728265 7.4:-55130988 MS.gene054510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGATTTTAAATTTTGTT+TGG - chr7.4:55131276-55131295 MS.gene054510:CDS 10.0%
!! AACTTTATAATAACTCTAAT+AGG + chr7.4:55131157-55131176 None:intergenic 15.0%
!! ATAAAGTTTAATTCAAAGAA+CGG - chr7.4:55131169-55131188 MS.gene054510:CDS 15.0%
!! GATGAGTATTTATTTAATAT+TGG - chr7.4:55131685-55131704 MS.gene054510:CDS 15.0%
!! AAGAAAGTTAAAACAACATT+AGG - chr7.4:55130785-55130804 MS.gene054510:CDS 20.0%
!! AATCTATTTGGGAAAAAAAA+GGG - chr7.4:55131251-55131270 MS.gene054510:CDS 20.0%
!! ATAACAAAAAATTTCTGATC+AGG + chr7.4:55131310-55131329 None:intergenic 20.0%
!! TTATAAAGTCGAATCTATTT+GGG - chr7.4:55131240-55131259 MS.gene054510:CDS 20.0%
!! TTTATAAAGTCGAATCTATT+TGG - chr7.4:55131239-55131258 MS.gene054510:CDS 20.0%
!!! AGTTTTATTTGTGAGTATTT+AGG - chr7.4:55131619-55131638 MS.gene054510:CDS 20.0%
!!! TTTGTTATAGATATTTCCAA+TGG - chr7.4:55131322-55131341 MS.gene054510:CDS 20.0%
! CGAGTAATGTATTGAAAATA+TGG + chr7.4:55131400-55131419 None:intergenic 25.0%
! GAATCTATTTGGGAAAAAAA+AGG - chr7.4:55131250-55131269 MS.gene054510:CDS 25.0%
! TATTGGCAATTATATTCACA+AGG - chr7.4:55131702-55131721 MS.gene054510:CDS 25.0%
!!! ACAAAAGTGTTCGTTTATAA+AGG - chr7.4:55131094-55131113 MS.gene054510:CDS 25.0%
!!! ATCTCATTTTTCTTTACTCT+AGG + chr7.4:55131523-55131542 None:intergenic 25.0%
!!! CAAAAGTGTTCGTTTATAAA+GGG - chr7.4:55131095-55131114 MS.gene054510:CDS 25.0%
!!! TTCTTGTCATTTTGATGATA+TGG - chr7.4:55131066-55131085 MS.gene054510:CDS 25.0%
AAAATTATTGGAAATGTCCC+TGG - chr7.4:55130920-55130939 MS.gene054510:CDS 30.0%
AACATTTCGAGCAAACAAAT+TGG + chr7.4:55131908-55131927 None:intergenic 30.0%
AAGTTTAATTCAAAGAACGG+TGG - chr7.4:55131172-55131191 MS.gene054510:CDS 30.0%
ACATTTCGAGCAAACAAATT+GGG + chr7.4:55131907-55131926 None:intergenic 30.0%
ATACGATTAACCACACATAT+AGG + chr7.4:55131361-55131380 None:intergenic 30.0%
CACGATGGGAAAAAAATTAT+TGG - chr7.4:55130908-55130927 MS.gene054510:CDS 30.0%
TCACAAATAAAACTTCCAGA+AGG + chr7.4:55131613-55131632 None:intergenic 30.0%
TTTCTTTCTTCTTGAGTCAT+CGG + chr7.4:55130771-55130790 None:intergenic 30.0%
! GATCAAGTGATTGATTCAAA+TGG - chr7.4:55132030-55132049 MS.gene054510:CDS 30.0%
! TCTCATTGATTACGTGATAA+AGG - chr7.4:55131015-55131034 MS.gene054510:CDS 30.0%
!! GCTTCAAATTTTCAAGACTA+AGG - chr7.4:55131552-55131571 MS.gene054510:CDS 30.0%
!! TTCATCTATGGTTGATAGTA+AGG - chr7.4:55131747-55131766 MS.gene054510:CDS 30.0%
AAACTCGGTAACGAATTTAC+CGG - chr7.4:55130830-55130849 MS.gene054510:CDS 35.0%
ACTATCACATCGATCATCAA+TGG + chr7.4:55131818-55131837 None:intergenic 35.0%
AGGTGAGATTATTGAAGATC+AGG - chr7.4:55131639-55131658 MS.gene054510:CDS 35.0%
CTCGTAACATTTATCCTGAA+TGG - chr7.4:55131416-55131435 MS.gene054510:CDS 35.0%
GTGGTTAATCGTATAGATTC+TGG - chr7.4:55131367-55131386 MS.gene054510:CDS 35.0%
TAATCGTATAGATTCTGGCA+AGG - chr7.4:55131372-55131391 MS.gene054510:CDS 35.0%
TAGGTGACAAGTTTCAGTAT+TGG - chr7.4:55130951-55130970 MS.gene054510:CDS 35.0%
TTACCAGTTGAAGCTTCTAA+GGG + chr7.4:55131790-55131809 None:intergenic 35.0%
TTTAATTCAAAGAACGGTGG+TGG - chr7.4:55131175-55131194 MS.gene054510:CDS 35.0%
TTTACCAGTTGAAGCTTCTA+AGG + chr7.4:55131791-55131810 None:intergenic 35.0%
! AAGACGAAAGCATGTTATTG+TGG - chr7.4:55132060-55132079 MS.gene054510:CDS 35.0%
! ATTGATGATCGATGTGATAG+TGG - chr7.4:55131817-55131836 MS.gene054510:CDS 35.0%
! TTTACGATGATGATGATCTG+AGG - chr7.4:55131929-55131948 MS.gene054510:CDS 35.0%
! TTTTCGAAGATTCCTCTGTT+GGG - chr7.4:55131440-55131459 MS.gene054510:CDS 35.0%
!! ATTTTCAAGACTAAGGCGAA+AGG - chr7.4:55131559-55131578 MS.gene054510:CDS 35.0%
AAAGTCAGCTCATTCATGCT+CGG + chr7.4:55131991-55132010 None:intergenic 40.0%
AATGTCCCTGGAATTGAAGT+AGG - chr7.4:55130932-55130951 MS.gene054510:CDS 40.0%
ACAAATTGGGAGAACAACTG+TGG + chr7.4:55131894-55131913 None:intergenic 40.0%
ACCATACTTAGCAGCATCAA+TGG + chr7.4:55131851-55131870 None:intergenic 40.0%
ACCATTGATGCTGCTAAGTA+TGG - chr7.4:55131847-55131866 MS.gene054510:CDS 40.0%
AGAAGCTGTTCCTATATGTG+TGG - chr7.4:55131348-55131367 MS.gene054510:CDS 40.0%
AGAAGCTTCAACTGGTAAAG+AGG - chr7.4:55131792-55131811 MS.gene054510:CDS 40.0%
GAATCTTCGAAAAGCCATTC+AGG + chr7.4:55131433-55131452 None:intergenic 40.0%
GGTGAGGTGTATTGTTACTA+TGG - chr7.4:55131214-55131233 MS.gene054510:CDS 40.0%
TCACAAGGTCAATAGTTCGT+GGG - chr7.4:55131717-55131736 MS.gene054510:CDS 40.0%
TCAGAGAATGCAATTCCTTC+TGG - chr7.4:55131595-55131614 MS.gene054510:CDS 40.0%
TGTCACCTACTTCAATTCCA+GGG + chr7.4:55130940-55130959 None:intergenic 40.0%
TTCACAAGGTCAATAGTTCG+TGG - chr7.4:55131716-55131735 MS.gene054510:CDS 40.0%
TTGTCACCTACTTCAATTCC+AGG + chr7.4:55130941-55130960 None:intergenic 40.0%
! AGGAACAGCTTCTTTTCCAT+TGG + chr7.4:55131341-55131360 None:intergenic 40.0%
! CTTTTCGAAGATTCCTCTGT+TGG - chr7.4:55131439-55131458 MS.gene054510:CDS 40.0%
!! ATGATCGATGTGATAGTGGT+AGG - chr7.4:55131821-55131840 MS.gene054510:CDS 40.0%
!! TCACGGGTTCTAAAACAAAG+AGG - chr7.4:55130875-55130894 MS.gene054510:CDS 40.0%
AAGACTAAGGCGAAAGGATG+GGG - chr7.4:55131565-55131584 MS.gene054510:CDS 45.0%
AGAACATTTACGCCCAACAG+AGG + chr7.4:55131455-55131474 None:intergenic 45.0%
AGAACCCGTGACACTTTGAT+AGG + chr7.4:55130866-55130885 None:intergenic 45.0%
AGAGGCAAGTTCATTCACGA+TGG - chr7.4:55130893-55130912 MS.gene054510:CDS 45.0%
CAACCCTTAGAAGCTTCAAC+TGG - chr7.4:55131784-55131803 MS.gene054510:CDS 45.0%
CAAGACTAAGGCGAAAGGAT+GGG - chr7.4:55131564-55131583 MS.gene054510:CDS 45.0%
GAGGCAAGTTCATTCACGAT+GGG - chr7.4:55130894-55130913 MS.gene054510:CDS 45.0%
GAGTCATCGGAAGTCAAAGA+CGG + chr7.4:55130758-55130777 None:intergenic 45.0%
GCTGCATATAGCATGATGTG+TGG + chr7.4:55131958-55131977 None:intergenic 45.0%
TCAAGACTAAGGCGAAAGGA+TGG - chr7.4:55131563-55131582 MS.gene054510:CDS 45.0%
TGGCAAGAACTCAACGTTGT+TGG - chr7.4:55130971-55130990 MS.gene054510:CDS 45.0%
TGTGCTCTCTGTGGAAAACT+CGG - chr7.4:55130815-55130834 MS.gene054510:CDS 45.0%
TTTGCCTGTGCTCTTAAGAG+TGG - chr7.4:55131487-55131506 MS.gene054510:CDS 45.0%
! AATTCAAAGAACGGTGGTGG+TGG - chr7.4:55131178-55131197 MS.gene054510:CDS 45.0%
! CGCTTCCTATCAAAGTGTCA+CGG - chr7.4:55130858-55130877 MS.gene054510:CDS 45.0%
! CTAAGTATGGTAACGTGGCA+AGG - chr7.4:55131860-55131879 MS.gene054510:CDS 45.0%
! GCTTCCTATCAAAGTGTCAC+GGG - chr7.4:55130859-55130878 MS.gene054510:CDS 45.0%
! TGCTGCTAAGTATGGTAACG+TGG - chr7.4:55131855-55131874 MS.gene054510:CDS 45.0%
CAAGGTCAATAGTTCGTGGG+AGG - chr7.4:55131720-55131739 MS.gene054510:CDS 50.0%
CCTGTGCTCTTAAGAGTGGA+GGG - chr7.4:55131491-55131510 MS.gene054510:CDS 50.0%
GGTAACTTCTGTGCTCTCTG+TGG - chr7.4:55130806-55130825 MS.gene054510:CDS 50.0%
GTGGGAGGAGGATTCATCTA+TGG - chr7.4:55131735-55131754 MS.gene054510:CDS 50.0%
GCCTGTGCTCTTAAGAGTGG+AGG - chr7.4:55131490-55131509 MS.gene054510:CDS 55.0%
GGTCAATAGTTCGTGGGAGG+AGG - chr7.4:55131723-55131742 MS.gene054510:CDS 55.0%
! CCCTCCACTCTTAAGAGCAC+AGG + chr7.4:55131494-55131513 None:intergenic 55.0%
! TTTGATAGGAAGCGCGTCGC+CGG + chr7.4:55130852-55130871 None:intergenic 55.0%
! TGGTGCACGTGGTGGAGGTG+AGG - chr7.4:55131198-55131217 MS.gene054510:CDS 65.0%
!! AACGGTGGTGGTGGTGCACG+TGG - chr7.4:55131187-55131206 MS.gene054510:CDS 65.0%
! GGTGGTGGTGCACGTGGTGG+AGG - chr7.4:55131193-55131212 MS.gene054510:CDS 70.0%
!! GGTGGTGGTGGTGCACGTGG+TGG - chr7.4:55131190-55131209 MS.gene054510:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 55130752 55132113 55130752 ID=MS.gene054510
chr7.4 mRNA 55130752 55132113 55130752 ID=MS.gene054510.t1;Parent=MS.gene054510
chr7.4 exon 55130752 55132113 55130752 ID=MS.gene054510.t1.exon1;Parent=MS.gene054510.t1
chr7.4 CDS 55130752 55132113 55130752 ID=cds.MS.gene054510.t1;Parent=MS.gene054510.t1
Gene Sequence

>MS.gene054510

ATGCCGTCTTTGACTTCCGATGACTCAAGAAGAAAGAAAGTTAAAACAACATTAGGTAACTTCTGTGCTCTCTGTGGAAAACTCGGTAACGAATTTACCGGCGACGCGCTTCCTATCAAAGTGTCACGGGTTCTAAAACAAAGAGGCAAGTTCATTCACGATGGGAAAAAAATTATTGGAAATGTCCCTGGAATTGAAGTAGGTGACAAGTTTCAGTATTGGCAAGAACTCAACGTTGTTGGTCTTCATCGTCAGAATCTAAGTCTCATTGATTACGTGATAAAGGATGATAATTTAATTGCAACTAGCATTGTTTCTTGTCATTTTGATGATATGGATGATACAAAAGTGTTCGTTTATAAAGGGAATCTTGCTCTGATGAATAGTTTTGCTGTTAAGAATCCTATTAGAGTTATTATAAAGTTTAATTCAAAGAACGGTGGTGGTGGTGCACGTGGTGGAGGTGAGGTGTATTGTTACTATGGTCTTTATAAAGTCGAATCTATTTGGGAAAAAAAAGGGAAATTAGATTTTAAATTTTGTTTGGTTAGATTGCCTGATCAGAAATTTTTTGTTATAGATATTTCCAATGGAAAAGAAGCTGTTCCTATATGTGTGGTTAATCGTATAGATTCTGGCAAGGTTCCATATTTTCAATACATTACTCGTAACATTTATCCTGAATGGCTTTTCGAAGATTCCTCTGTTGGGCGTAAATGTTCTGATTCAATGAAATTTGCCTGTGCTCTTAAGAGTGGAGGGAAAATTCCTAGAGTAAAGAAAAATGAGATTAAATTTAAGCTTCAAATTTTCAAGACTAAGGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTCCTTCTGGAAGTTTTATTTGTGAGTATTTAGGTGAGATTATTGAAGATCAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATTTAATATTGGCAATTATATTCACAAGGTCAATAGTTCGTGGGAGGAGGATTCATCTATGGTTGATAGTAAGGAGATGAGTTCATATCAACCCTTAGAAGCTTCAACTGGTAAAGAGGCCATTGATGATCGATGTGATAGTGGTAGGTTTACCATTGATGCTGCTAAGTATGGTAACGTGGCAAGGTTTATCAACCACAGTTGTTCTCCCAATTTGTTTGCTCGAAATGTTCTTTACGATGATGATGATCTGAGGATTCCACACATCATGCTATATGCAGCTGAGAACATTCCGAGCATGAATGAGCTGACTTTGAATTACAATTACAAGATCGATCAAGTGATTGATTCAAATGGAAATTTAAAGACGAAAGCATGTTATTGTGGAGCTTCTGAATGCATCCGTCGACTGTATTGA
Protein sequence

>MS.gene054510.t1

MPSLTSDDSRRKKVKTTLGNFCALCGKLGNEFTGDALPIKVSRVLKQRGKFIHDGKKIIGNVPGIEVGDKFQYWQELNVVGLHRQNLSLIDYVIKDDNLIATSIVSCHFDDMDDTKVFVYKGNLALMNSFAVKNPIRVIIKFNSKNGGGGARGGGEVYCYYGLYKVESIWEKKGKLDFKFCLVRLPDQKFFVIDISNGKEAVPICVVNRIDSGKVPYFQYITRNIYPEWLFEDSSVGRKCSDSMKFACALKSGGKIPRVKKNEIKFKLQIFKTKAKGWGVRSENAIPSGSFICEYLGEIIEDQEALKIVDNDEYLFNIGNYIHKVNSSWEEDSSMVDSKEMSSYQPLEASTGKEAIDDRCDSGRFTIDAAKYGNVARFINHSCSPNLFARNVLYDDDDLRIPHIMLYAAENIPSMNELTLNYNYKIDQVIDSNGNLKTKACYCGASECIRRLY