Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054590.t1 | XP_003597798.2 | 74.3 | 420 | 94 | 4 | 1 | 416 | 1 | 410 | 2.30E-140 | 508.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054590.t1 | Q5KQI4 | 43.4 | 281 | 144 | 8 | 4 | 279 | 6 | 276 | 2.1e-44 | 181.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054590.t1 | G7IMD4 | 74.3 | 420 | 94 | 4 | 1 | 416 | 1 | 410 | 1.7e-140 | 508.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene054590.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054590.t1 | MTR_2g102450 | 80.476 | 420 | 68 | 4 | 1 | 416 | 1 | 410 | 0.0 | 624 |
MS.gene054590.t1 | MTR_2g102450 | 78.299 | 341 | 60 | 4 | 80 | 416 | 26 | 356 | 7.89e-172 | 485 |
MS.gene054590.t1 | MTR_4g008310 | 89.205 | 176 | 18 | 1 | 56 | 230 | 129 | 304 | 6.78e-100 | 300 |
MS.gene054590.t1 | MTR_3g101520 | 42.174 | 230 | 124 | 5 | 9 | 236 | 5 | 227 | 6.18e-46 | 158 |
MS.gene054590.t1 | MTR_3g101520 | 41.739 | 230 | 117 | 4 | 9 | 236 | 5 | 219 | 8.69e-46 | 157 |
MS.gene054590.t1 | MTR_4g101970 | 34.646 | 254 | 109 | 11 | 183 | 396 | 51 | 287 | 9.87e-21 | 93.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054590.t1 | AT5G58280 | 43.701 | 254 | 113 | 4 | 12 | 238 | 5 | 255 | 2.15e-57 | 191 |
MS.gene054590.t1 | AT5G58280 | 44.314 | 255 | 109 | 5 | 12 | 238 | 5 | 254 | 1.10e-56 | 189 |
MS.gene054590.t1 | AT5G58280 | 43.860 | 228 | 117 | 4 | 12 | 238 | 5 | 222 | 5.63e-51 | 173 |
MS.gene054590.t1 | AT3G19184 | 40.239 | 251 | 125 | 4 | 12 | 254 | 8 | 241 | 2.83e-45 | 158 |
MS.gene054590.t1 | AT3G19184 | 40.239 | 251 | 125 | 4 | 12 | 254 | 8 | 241 | 2.91e-45 | 158 |
MS.gene054590.t1 | AT5G42700 | 39.301 | 229 | 119 | 5 | 10 | 233 | 7 | 220 | 6.63e-41 | 145 |
MS.gene054590.t1 | AT5G42700 | 38.674 | 181 | 98 | 3 | 55 | 233 | 6 | 175 | 2.40e-32 | 121 |
Find 66 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAACATTAGTCTTTGATTT+TGG | 0.195804 | 4.1:+87130461 | None:intergenic |
ATACGAAGGAACTGGGTTTC+TGG | 0.220802 | 4.1:+87130412 | None:intergenic |
GGTTGAAGCAGCAAGATTTA+AGG | 0.234558 | 4.1:-87129433 | MS.gene054590:intron |
TTCCTTTGATTTAACTGTTT+TGG | 0.239717 | 4.1:+87128045 | None:intergenic |
TCGAGGTGTGCATCCTCTTT+TGG | 0.268589 | 4.1:+87127953 | None:intergenic |
TCAAAGACTGCAAATTGATT+TGG | 0.272907 | 4.1:+87129817 | None:intergenic |
TTTAGATTCTTTGATTGCTT+TGG | 0.273612 | 4.1:+87128144 | None:intergenic |
AGCCGCTTCATACTTGTTAC+TGG | 0.292196 | 4.1:+87131536 | None:intergenic |
TTTACCTTGGATTTCTTTGC+TGG | 0.294171 | 4.1:+87130579 | None:intergenic |
AGCGATTTCAGTCAATGTTT+TGG | 0.306034 | 4.1:+87130605 | None:intergenic |
GAAGATTCTTGTTAAAATAA+TGG | 0.308039 | 4.1:-87127834 | MS.gene054590:CDS |
GAAGGTGATGTATGTGAAAT+TGG | 0.313037 | 4.1:-87127875 | MS.gene054590:CDS |
ATCAAAGACTAATGTTGTTC+TGG | 0.324841 | 4.1:-87130456 | MS.gene054590:CDS |
TTAAATCAAAGGAAGCTTAT+AGG | 0.330021 | 4.1:-87128036 | MS.gene054590:CDS |
TTGGACTTAGGCTCAAGTTT+AGG | 0.350402 | 4.1:+87128064 | None:intergenic |
GGCAACTTTGTAGCTGCCTC+TGG | 0.368043 | 4.1:+87127920 | None:intergenic |
CATGTTCTTTCTTCTTGCCT+AGG | 0.381909 | 4.1:+87127804 | None:intergenic |
ATTTGCATTGAAACATAAAC+TGG | 0.400811 | 4.1:-87129484 | MS.gene054590:CDS |
CAAGAAGAAAGAACATGTTC+AGG | 0.404310 | 4.1:-87127798 | MS.gene054590:CDS |
TCTTCACGATACGAAGGAAC+TGG | 0.423062 | 4.1:+87130404 | None:intergenic |
CACTTATCAAGTCAATGGTT+TGG | 0.424323 | 4.1:-87129788 | MS.gene054590:CDS |
TTCATACTTGTTACTGGAAG+TGG | 0.425368 | 4.1:+87131542 | None:intergenic |
TCAAGAAAGAAAGCGTGCTT+TGG | 0.426683 | 4.1:-87129856 | MS.gene054590:CDS |
CCTCTGGTTTCACAGTTTCG+AGG | 0.431144 | 4.1:+87127936 | None:intergenic |
AAAAGAAGAAAGCGATGCTT+TGG | 0.444588 | 4.1:-87128191 | MS.gene054590:CDS |
ACCTTCCACAGTTGCGGAAG+AGG | 0.453437 | 4.1:-87130046 | MS.gene054590:CDS |
TCCATCACTTATCAAGTCAA+TGG | 0.461188 | 4.1:-87129793 | MS.gene054590:CDS |
GTTTGGTCTCACGTTTATAG+AGG | 0.467915 | 4.1:-87129771 | MS.gene054590:CDS |
CAAGGTCAAGTTCATCATCA+TGG | 0.471764 | 4.1:-87130022 | MS.gene054590:CDS |
ACCTCTTCCGCAACTGTGGA+AGG | 0.475917 | 4.1:+87130045 | None:intergenic |
GGAAAACAAGAAGAGGTTTG+AGG | 0.478514 | 4.1:-87131496 | MS.gene054590:intron |
AAAGAAAACTAGAATGCAAA+AGG | 0.490045 | 4.1:-87128098 | MS.gene054590:CDS |
AGAAGAAAGCGATGCTTTGG+TGG | 0.493049 | 4.1:-87128188 | MS.gene054590:CDS |
ACCATTGACTTGATAAGTGA+TGG | 0.497922 | 4.1:+87129792 | None:intergenic |
ATTTGAAAATATAGATGAAG+AGG | 0.499410 | 4.1:-87128218 | MS.gene054590:CDS |
CTAATGTTGTTCTGGAACCT+AGG | 0.501598 | 4.1:-87130448 | MS.gene054590:CDS |
AAGGTCAAGTTCATCATCAT+GGG | 0.503820 | 4.1:-87130021 | MS.gene054590:CDS |
TGTTCCTCGCAAAATCTCCT+TGG | 0.505957 | 4.1:+87129612 | None:intergenic |
AGCAAGAAAACTGCGCTTAG+TGG | 0.510768 | 4.1:-87129519 | MS.gene054590:CDS |
AAACTGCGCTTAGTGGTGGC+TGG | 0.513224 | 4.1:-87129512 | MS.gene054590:CDS |
CACAGTTGCGGAAGAGGTCA+AGG | 0.544125 | 4.1:-87130040 | MS.gene054590:CDS |
AGCGATGCTTTGGTGGAAGA+AGG | 0.546631 | 4.1:-87128181 | MS.gene054590:CDS |
TACTGCAGTTGAGCCAAAAG+AGG | 0.549920 | 4.1:-87127966 | MS.gene054590:CDS |
GTCCAAAACAGTTAAATCAA+AGG | 0.550924 | 4.1:-87128047 | MS.gene054590:CDS |
AAAATAATGGAGGCTGACCT+AGG | 0.559343 | 4.1:-87127821 | MS.gene054590:CDS |
GCACAGACCTTCCACAGTTG+CGG | 0.564774 | 4.1:-87130052 | MS.gene054590:CDS |
GCGTGCTTTGGATGCTGCAG+AGG | 0.570639 | 4.1:-87129844 | MS.gene054590:CDS |
CTTGACCTCTTCCGCAACTG+TGG | 0.570829 | 4.1:+87130041 | None:intergenic |
TTGAAACATAAACTGGATGA+TGG | 0.585314 | 4.1:-87129477 | MS.gene054590:CDS |
CTTCACGATACGAAGGAACT+GGG | 0.585948 | 4.1:+87130405 | None:intergenic |
TCAGTTACGCTTACGTTGCG+AGG | 0.594424 | 4.1:-87129908 | MS.gene054590:intron |
GTGTGTAAGCAGATGGCAAA+CGG | 0.598841 | 4.1:-87131570 | None:intergenic |
GACTTGAGGAAAACAAGAAG+AGG | 0.599382 | 4.1:-87131503 | MS.gene054590:CDS |
CAAGTTCATCATCATGGGGA+AGG | 0.599718 | 4.1:-87130016 | MS.gene054590:intron |
CTGGCACGAGAAGAGCGCCT+AGG | 0.600809 | 4.1:+87130431 | None:intergenic |
AGTTCCTTCGTATCGTGAAG+AGG | 0.609998 | 4.1:-87130402 | MS.gene054590:intron |
AAGAAAACTGCGCTTAGTGG+TGG | 0.610549 | 4.1:-87129516 | MS.gene054590:CDS |
TTCCAGTAACAAGTATGAAG+CGG | 0.611515 | 4.1:-87131538 | MS.gene054590:CDS |
ATCTAAAACTGTGAAACCAA+AGG | 0.619114 | 4.1:-87128128 | MS.gene054590:CDS |
GATTCTTGTTAAAATAATGG+AGG | 0.623792 | 4.1:-87127831 | MS.gene054590:CDS |
TAGTCCAGCAAAGAAATCCA+AGG | 0.643226 | 4.1:-87130583 | MS.gene054590:intron |
AATTGGTGACTCACGTAATG+CGG | 0.648633 | 4.1:-87127858 | MS.gene054590:CDS |
GGCTAGAGAACAAAGACTTG+AGG | 0.682861 | 4.1:-87131517 | MS.gene054590:CDS |
CTTACCTCTTCACGATACGA+AGG | 0.683573 | 4.1:+87130398 | None:intergenic |
AGGTCAAGTTCATCATCATG+GGG | 0.691621 | 4.1:-87130020 | MS.gene054590:CDS |
CCTCGAAACTGTGAAACCAG+AGG | 0.716116 | 4.1:-87127936 | MS.gene054590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAAAATATAAATTTATTGA+AGG | - | chr4.1:87130685-87130704 | MS.gene054590:intron | 10.0% |
!! | GATATTAAAATATTACAAAA+AGG | + | chr4.1:87130124-87130143 | None:intergenic | 10.0% |
!!! | ATATATTATCTTTATTTTGT+AGG | - | chr4.1:87129606-87129625 | MS.gene054590:CDS | 10.0% |
!!! | TATATTATCTTTATTTTGTA+GGG | - | chr4.1:87129607-87129626 | MS.gene054590:CDS | 10.0% |
!! | AATTTATTGAAGGTTAATTT+AGG | - | chr4.1:87130695-87130714 | MS.gene054590:intron | 15.0% |
!! | CATATGAATATAATTATGTT+AGG | + | chr4.1:87130955-87130974 | None:intergenic | 15.0% |
!! | CTAACATAATTATATTCATA+TGG | - | chr4.1:87130953-87130972 | MS.gene054590:intron | 15.0% |
!!! | AAACTTGCAATTTTTTAAAT+CGG | - | chr4.1:87128687-87128706 | MS.gene054590:intron | 15.0% |
!!! | AAATTGAAATTTTATTGACA+TGG | - | chr4.1:87129304-87129323 | MS.gene054590:intron | 15.0% |
!! | AAAATCATAAAAAACCTTTG+AGG | - | chr4.1:87128436-87128455 | MS.gene054590:intron | 20.0% |
!! | ATTTGAAAATATAGATGAAG+AGG | - | chr4.1:87131028-87131047 | MS.gene054590:intron | 20.0% |
!! | GAAGATTCTTGTTAAAATAA+TGG | - | chr4.1:87131412-87131431 | MS.gene054590:intron | 20.0% |
!! | TATTTCACTTTATTACAGTT+AGG | - | chr4.1:87129172-87129191 | MS.gene054590:intron | 20.0% |
!! | TCCAAAAATTGACTATAAAA+TGG | - | chr4.1:87129660-87129679 | MS.gene054590:intron | 20.0% |
!! | TTGCTTTATACTTTATATCA+TGG | - | chr4.1:87128326-87128345 | MS.gene054590:intron | 20.0% |
!! | TTTCATGTTAATTGAAATCA+AGG | - | chr4.1:87127882-87127901 | MS.gene054590:CDS | 20.0% |
!!! | AAATCAAGGTATTTAAATAG+TGG | - | chr4.1:87127896-87127915 | MS.gene054590:CDS | 20.0% |
!!! | AAATTTTATTGACATGGTTA+TGG | - | chr4.1:87129310-87129329 | MS.gene054590:intron | 20.0% |
!!! | AATTTTATTGACATGGTTAT+GGG | - | chr4.1:87129311-87129330 | MS.gene054590:intron | 20.0% |
!!! | ACCATTTTATAGTCAATTTT+TGG | + | chr4.1:87129664-87129683 | None:intergenic | 20.0% |
!!! | ATAATTCTTTTTGTTTCTAC+TGG | + | chr4.1:87130901-87130920 | None:intergenic | 20.0% |
!!! | ATTAGTTTGAGAAACTTAAA+TGG | + | chr4.1:87130597-87130616 | None:intergenic | 20.0% |
! | AAAAAATTGCAAGTTTACCT+TGG | + | chr4.1:87128683-87128702 | None:intergenic | 25.0% |
! | AAAGAAAACTAGAATGCAAA+AGG | - | chr4.1:87131148-87131167 | MS.gene054590:intron | 25.0% |
! | AAAGAAATAGTTGTCAAATG+TGG | - | chr4.1:87127941-87127960 | MS.gene054590:CDS | 25.0% |
! | AACAAAAAGAATTATATGCC+AGG | - | chr4.1:87130906-87130925 | MS.gene054590:intron | 25.0% |
! | AAGAAGAAACTCAATATCAA+AGG | + | chr4.1:87130086-87130105 | None:intergenic | 25.0% |
! | AATATCTACTAGGAATATGT+TGG | - | chr4.1:87128979-87128998 | MS.gene054590:intron | 25.0% |
! | ACATTAAAGAATGAACAACA+AGG | + | chr4.1:87129541-87129560 | None:intergenic | 25.0% |
! | ATAGTGCAAAAATATCTACT+AGG | - | chr4.1:87128969-87128988 | MS.gene054590:intron | 25.0% |
! | ATCTTCAAATTCAACAATCA+AGG | + | chr4.1:87129098-87129117 | None:intergenic | 25.0% |
! | ATTTGCATTGAAACATAAAC+TGG | - | chr4.1:87129762-87129781 | MS.gene054590:CDS | 25.0% |
! | CAGCTAACAATTACTATATT+TGG | + | chr4.1:87130260-87130279 | None:intergenic | 25.0% |
! | CCAAAATAGTTGTTATAAGT+AGG | - | chr4.1:87130486-87130505 | MS.gene054590:intron | 25.0% |
! | GATTCTTGTTAAAATAATGG+AGG | - | chr4.1:87131415-87131434 | MS.gene054590:intron | 25.0% |
! | GGAAAAGGAATAATTTCAAA+TGG | - | chr4.1:87130013-87130032 | MS.gene054590:intron | 25.0% |
! | TAAGATTATCTCAAACAAAG+TGG | + | chr4.1:87127782-87127801 | None:intergenic | 25.0% |
! | TATATATGCATGTGTATCTA+AGG | - | chr4.1:87127857-87127876 | MS.gene054590:CDS | 25.0% |
! | TATATCATGGCTATAAATTG+TGG | - | chr4.1:87128339-87128358 | MS.gene054590:intron | 25.0% |
! | TATCTTCAAAAGTTATCTCA+TGG | + | chr4.1:87130301-87130320 | None:intergenic | 25.0% |
! | TTAAATCAAAGGAAGCTTAT+AGG | - | chr4.1:87131210-87131229 | MS.gene054590:intron | 25.0% |
! | TTTAGATTCTTTGATTGCTT+TGG | + | chr4.1:87131105-87131124 | None:intergenic | 25.0% |
! | TTTATACATACTACTCAATC+TGG | + | chr4.1:87128051-87128070 | None:intergenic | 25.0% |
!! | AATTCTCATACTTTTGTCTT+AGG | + | chr4.1:87129019-87129038 | None:intergenic | 25.0% |
!! | ACCAGTTTAGAATTTGAAAA+GGG | + | chr4.1:87130345-87130364 | None:intergenic | 25.0% |
!! | ATTCTCATACTTTTGTCTTA+GGG | + | chr4.1:87129018-87129037 | None:intergenic | 25.0% |
!! | CAATTACTATATTTGGAACT+TGG | + | chr4.1:87130253-87130272 | None:intergenic | 25.0% |
!! | CCTACTTATAACAACTATTT+TGG | + | chr4.1:87130489-87130508 | None:intergenic | 25.0% |
!! | TACCAGTTTAGAATTTGAAA+AGG | + | chr4.1:87130346-87130365 | None:intergenic | 25.0% |
!! | TTTTCCTCAAAAACAAATCA+TGG | + | chr4.1:87129999-87130018 | None:intergenic | 25.0% |
!!! | AAAGTTTTAAGCCATCATTA+AGG | + | chr4.1:87127827-87127846 | None:intergenic | 25.0% |
!!! | ACAACATTAGTCTTTGATTT+TGG | + | chr4.1:87128788-87128807 | None:intergenic | 25.0% |
!!! | ATGATTTGTTTTTGAGGAAA+AGG | - | chr4.1:87129998-87130017 | MS.gene054590:intron | 25.0% |
!!! | TAAGTCATGGTTTTAAATTG+TGG | - | chr4.1:87128141-87128160 | MS.gene054590:CDS | 25.0% |
!!! | TACTTTTAGGGTTGAAATTA+CGG | - | chr4.1:87130545-87130564 | MS.gene054590:intron | 25.0% |
!!! | TGACTATAAAATGGTTTTAG+AGG | - | chr4.1:87129669-87129688 | MS.gene054590:intron | 25.0% |
!!! | TTCCTTTGATTTAACTGTTT+TGG | + | chr4.1:87131204-87131223 | None:intergenic | 25.0% |
AAAAAGAATTATATGCCAGG+TGG | - | chr4.1:87130909-87130928 | MS.gene054590:intron | 30.0% | |
AAGAAAAAGAAGGCAAAAGA+AGG | - | chr4.1:87131353-87131372 | MS.gene054590:intron | 30.0% | |
ACTATCATGTTGGAAAAGAA+TGG | + | chr4.1:87129124-87129143 | None:intergenic | 30.0% | |
AGAAACATCAAAAACCTTGA+TGG | - | chr4.1:87127989-87128008 | MS.gene054590:CDS | 30.0% | |
AGAACATCTAAGTTCATTAG+TGG | + | chr4.1:87130043-87130062 | None:intergenic | 30.0% | |
ATAGTAATTGTTAGCTGTGA+GGG | - | chr4.1:87130263-87130282 | MS.gene054590:intron | 30.0% | |
ATCAAAGACTAATGTTGTTC+TGG | - | chr4.1:87128790-87128809 | MS.gene054590:intron | 30.0% | |
ATTTGCAACCAAAAAACAAG+TGG | + | chr4.1:87130825-87130844 | None:intergenic | 30.0% | |
CTAAATCCTTGAGAACAAAA+GGG | + | chr4.1:87128606-87128625 | None:intergenic | 30.0% | |
CTATATGTACTGCTCAATAT+AGG | + | chr4.1:87128256-87128275 | None:intergenic | 30.0% | |
GACATATCACTAGTAAATGT+GGG | + | chr4.1:87130467-87130486 | None:intergenic | 30.0% | |
GATAATAACTGATATCAGCT+TGG | - | chr4.1:87129921-87129940 | MS.gene054590:intron | 30.0% | |
GATATAGTTTGAACTTTGCA+AGG | + | chr4.1:87128882-87128901 | None:intergenic | 30.0% | |
GTCCAAAACAGTTAAATCAA+AGG | - | chr4.1:87131199-87131218 | MS.gene054590:intron | 30.0% | |
TAAATCCTTGAGAACAAAAG+GGG | + | chr4.1:87128605-87128624 | None:intergenic | 30.0% | |
TATAGTAATTGTTAGCTGTG+AGG | - | chr4.1:87130262-87130281 | MS.gene054590:intron | 30.0% | |
TCAAAGACTGCAAATTGATT+TGG | + | chr4.1:87129432-87129451 | None:intergenic | 30.0% | |
TCATTTGTGTACCTTAATGA+TGG | - | chr4.1:87127813-87127832 | MS.gene054590:CDS | 30.0% | |
TGACCAACTTAATTCTTACA+AGG | - | chr4.1:87130172-87130191 | MS.gene054590:intron | 30.0% | |
TTAAGCGATCTTTGATATCA+TGG | - | chr4.1:87128365-87128384 | MS.gene054590:intron | 30.0% | |
TTGAAACATAAACTGGATGA+TGG | - | chr4.1:87129769-87129788 | MS.gene054590:CDS | 30.0% | |
TTTGCAACCAAAAAACAAGT+GGG | + | chr4.1:87130824-87130843 | None:intergenic | 30.0% | |
! | AAGCCTTGTAAGAATTAAGT+TGG | + | chr4.1:87130178-87130197 | None:intergenic | 30.0% |
! | ACCCTTTTCAAATTCTAAAC+TGG | - | chr4.1:87130341-87130360 | MS.gene054590:intron | 30.0% |
! | ATCTAAAACTGTGAAACCAA+AGG | - | chr4.1:87131118-87131137 | MS.gene054590:intron | 30.0% |
! | GGAAACTTGTTCTATAAGAA+AGG | - | chr4.1:87130656-87130675 | MS.gene054590:intron | 30.0% |
! | GGATAATAGTTGTGATAATG+AGG | - | chr4.1:87128473-87128492 | MS.gene054590:intron | 30.0% |
! | GGTAGTTTGCATAAATCTAT+AGG | + | chr4.1:87128505-87128524 | None:intergenic | 30.0% |
! | TGATGCAGTAGTTTTTGAAT+TGG | - | chr4.1:87129792-87129811 | MS.gene054590:CDS | 30.0% |
! | TTTGCCTTCTTTTTCTTGTT+TGG | + | chr4.1:87131350-87131369 | None:intergenic | 30.0% |
! | TTTTAAATTGTGGTCGAGTT+GGG | - | chr4.1:87128151-87128170 | MS.gene054590:CDS | 30.0% |
!! | ACTTTTGAAGATAGCTTTTG+TGG | - | chr4.1:87130308-87130327 | MS.gene054590:intron | 30.0% |
!! | CTTTGAAGTTAAAAGAGAGT+TGG | + | chr4.1:87129862-87129881 | None:intergenic | 30.0% |
!! | CTTTTGAAGATAGCTTTTGT+GGG | - | chr4.1:87130309-87130328 | MS.gene054590:intron | 30.0% |
!! | GATTTAACTGTTTTGGACTT+AGG | + | chr4.1:87131197-87131216 | None:intergenic | 30.0% |
!! | TAAATCGGTTTTACTCTGTA+AGG | - | chr4.1:87128702-87128721 | MS.gene054590:intron | 30.0% |
!!! | AATGGTTTTAGAGGATGAAA+AGG | - | chr4.1:87129678-87129697 | MS.gene054590:intron | 30.0% |
!!! | AGCTTTTGGAGTTTACTTTT+AGG | - | chr4.1:87130532-87130551 | MS.gene054590:intron | 30.0% |
!!! | ATGGTTTTAGAGGATGAAAA+GGG | - | chr4.1:87129679-87129698 | MS.gene054590:intron | 30.0% |
!!! | CAACTCTCTTTTAACTTCAA+AGG | - | chr4.1:87129860-87129879 | MS.gene054590:CDS | 30.0% |
!!! | GCTTTTGGAGTTTACTTTTA+GGG | - | chr4.1:87130533-87130552 | MS.gene054590:intron | 30.0% |
!!! | GCTTTTTTGATTTCATTCAG+TGG | + | chr4.1:87129364-87129383 | None:intergenic | 30.0% |
!!! | TTGTCCATGATTTGTTTTTG+AGG | - | chr4.1:87129992-87130011 | MS.gene054590:intron | 30.0% |
AAAAGAAGAAAGCGATGCTT+TGG | - | chr4.1:87131055-87131074 | MS.gene054590:intron | 35.0% | |
AAAGAGAGTTGGATGAGAAT+TGG | + | chr4.1:87129851-87129870 | None:intergenic | 35.0% | |
AACAATCAAGGATTTCTCGA+AGG | + | chr4.1:87129086-87129105 | None:intergenic | 35.0% | |
AACCATGACTTAAACCAACA+CGG | + | chr4.1:87128133-87128152 | None:intergenic | 35.0% | |
AAGGTCAAGTTCATCATCAT+GGG | - | chr4.1:87129225-87129244 | MS.gene054590:intron | 35.0% | |
ACGATTCTGCACAAAGAAAT+AGG | + | chr4.1:87128756-87128775 | None:intergenic | 35.0% | |
AGAATTCAAAACTTCCGTGT+TGG | - | chr4.1:87128116-87128135 | MS.gene054590:CDS | 35.0% | |
AGAGAAAAATCACACAACAC+TGG | + | chr4.1:87129062-87129081 | None:intergenic | 35.0% | |
CAACTATGTTGGCAATATCA+AGG | + | chr4.1:87128179-87128198 | None:intergenic | 35.0% | |
CAAGAAGAAAGAACATGTTC+AGG | - | chr4.1:87131448-87131467 | MS.gene054590:intron | 35.0% | |
CACTTATCAAGTCAATGGTT+TGG | - | chr4.1:87129458-87129477 | MS.gene054590:CDS | 35.0% | |
CCTAAATCCTTGAGAACAAA+AGG | + | chr4.1:87128607-87128626 | None:intergenic | 35.0% | |
CGATTCTGCACAAAGAAATA+GGG | + | chr4.1:87128755-87128774 | None:intergenic | 35.0% | |
CTCAAGAAAGAGGAATATGT+TGG | - | chr4.1:87128938-87128957 | MS.gene054590:intron | 35.0% | |
GAAGGTGATGTATGTGAAAT+TGG | - | chr4.1:87131371-87131390 | MS.gene054590:intron | 35.0% | |
GGACATATCACTAGTAAATG+TGG | + | chr4.1:87130468-87130487 | None:intergenic | 35.0% | |
GTTGCCAAACAAGAAAAAGA+AGG | - | chr4.1:87131343-87131362 | MS.gene054590:intron | 35.0% | |
TAGTAATTGTTAGCTGTGAG+GGG | - | chr4.1:87130264-87130283 | MS.gene054590:intron | 35.0% | |
TATAGAACAAGTTTCCCTGA+GGG | + | chr4.1:87130652-87130671 | None:intergenic | 35.0% | |
TCACAACTATTATCCACATG+TGG | + | chr4.1:87128468-87128487 | None:intergenic | 35.0% | |
TCCATCACTTATCAAGTCAA+TGG | - | chr4.1:87129453-87129472 | MS.gene054590:CDS | 35.0% | |
TGAGTTTCTTCTTGAGTTCA+AGG | - | chr4.1:87130093-87130112 | MS.gene054590:intron | 35.0% | |
TTATAGAACAAGTTTCCCTG+AGG | + | chr4.1:87130653-87130672 | None:intergenic | 35.0% | |
TTCCAGTAACAAGTATGAAG+CGG | - | chr4.1:87127708-87127727 | MS.gene054590:CDS | 35.0% | |
TTCCTGCAAAACTATCATGT+TGG | + | chr4.1:87129134-87129153 | None:intergenic | 35.0% | |
TTTACCTTGGATTTCTTTGC+TGG | + | chr4.1:87128670-87128689 | None:intergenic | 35.0% | |
! | AATATCCCCTTTTGTTCTCA+AGG | - | chr4.1:87128597-87128616 | MS.gene054590:intron | 35.0% |
! | AGCGATTTCAGTCAATGTTT+TGG | + | chr4.1:87128644-87128663 | None:intergenic | 35.0% |
! | ATAACCCGCAACAACATTTT+AGG | + | chr4.1:87128020-87128039 | None:intergenic | 35.0% |
! | CCTCTCTTTCTGAAAAACTT+CGG | + | chr4.1:87131557-87131576 | None:intergenic | 35.0% |
! | CCTTTTGTTCTCAAGGATTT+AGG | - | chr4.1:87128604-87128623 | MS.gene054590:intron | 35.0% |
! | CTCACGTTTATAGAGGTTTT+TGG | - | chr4.1:87129482-87129501 | MS.gene054590:CDS | 35.0% |
! | GTTTTCTTTGTAGCTTCCTT+TGG | + | chr4.1:87131137-87131156 | None:intergenic | 35.0% |
! | TTCATACTTGTTACTGGAAG+TGG | + | chr4.1:87127707-87127726 | None:intergenic | 35.0% |
!! | ACCATTGACTTGATAAGTGA+TGG | + | chr4.1:87129457-87129476 | None:intergenic | 35.0% |
!! | GTTTTAAATTGTGGTCGAGT+TGG | - | chr4.1:87128150-87128169 | MS.gene054590:CDS | 35.0% |
!! | TTATTTTGTAGGGTCTTCCA+AGG | - | chr4.1:87129617-87129636 | MS.gene054590:CDS | 35.0% |
!! | TTCCAACATGATAGTTTTGC+AGG | - | chr4.1:87129129-87129148 | MS.gene054590:intron | 35.0% |
!!! | ATTTAGCTCTAGAGTTTTGC+AGG | - | chr4.1:87129036-87129055 | MS.gene054590:intron | 35.0% |
!!! | CGTTTATAGAGGTTTTTGGT+TGG | - | chr4.1:87129486-87129505 | MS.gene054590:CDS | 35.0% |
!!! | TATAGAGGTTTTTGGTTGGT+AGG | - | chr4.1:87129490-87129509 | MS.gene054590:CDS | 35.0% |
AAAGACTACGTTAGTGGTGA+GGG | + | chr4.1:87128533-87128552 | None:intergenic | 40.0% | |
AACCAAAAAACAAGTGGGTC+TGG | + | chr4.1:87130819-87130838 | None:intergenic | 40.0% | |
AGACACAAAGACTACGTTAG+TGG | + | chr4.1:87128539-87128558 | None:intergenic | 40.0% | |
AGGTCAAGTTCATCATCATG+GGG | - | chr4.1:87129226-87129245 | MS.gene054590:intron | 40.0% | |
ATAGAACAAGTTTCCCTGAG+GGG | + | chr4.1:87130651-87130670 | None:intergenic | 40.0% | |
ATATCATCATTCGATCCACC+TGG | + | chr4.1:87130927-87130946 | None:intergenic | 40.0% | |
ATCAGTCGATAGTGATAGAC+AGG | - | chr4.1:87129899-87129918 | MS.gene054590:CDS | 40.0% | |
CAAGGTCAAGTTCATCATCA+TGG | - | chr4.1:87129224-87129243 | MS.gene054590:intron | 40.0% | |
CATGTTCTTTCTTCTTGCCT+AGG | + | chr4.1:87131445-87131464 | None:intergenic | 40.0% | |
GACTTGAGGAAAACAAGAAG+AGG | - | chr4.1:87127743-87127762 | MS.gene054590:CDS | 40.0% | |
GCCAAAGTTGACAACTATGT+TGG | + | chr4.1:87128190-87128209 | None:intergenic | 40.0% | |
GCCAACATAGTTGTCAACTT+TGG | - | chr4.1:87128186-87128205 | MS.gene054590:CDS | 40.0% | |
GGAAAACAAGAAGAGGTTTG+AGG | - | chr4.1:87127750-87127769 | MS.gene054590:CDS | 40.0% | |
GGTTGAAGCAGCAAGATTTA+AGG | - | chr4.1:87129813-87129832 | MS.gene054590:CDS | 40.0% | |
GTTTGGTCTCACGTTTATAG+AGG | - | chr4.1:87129475-87129494 | MS.gene054590:CDS | 40.0% | |
TAGTCCAGCAAAGAAATCCA+AGG | - | chr4.1:87128663-87128682 | MS.gene054590:intron | 40.0% | |
TGTGGCCTAAAATGTTGTTG+CGG | - | chr4.1:87128012-87128031 | MS.gene054590:CDS | 40.0% | |
TTGGACTTAGGCTCAAGTTT+AGG | + | chr4.1:87131185-87131204 | None:intergenic | 40.0% | |
! | AAAATAATGGAGGCTGACCT+AGG | - | chr4.1:87131425-87131444 | MS.gene054590:intron | 40.0% |
! | AATTGGTGACTCACGTAATG+CGG | - | chr4.1:87131388-87131407 | MS.gene054590:intron | 40.0% |
! | ATTTTCCAAATTGCCCCTCA+GGG | - | chr4.1:87130635-87130654 | MS.gene054590:intron | 40.0% |
! | GTCTATCACTATCGACTGAT+CGG | + | chr4.1:87129899-87129918 | None:intergenic | 40.0% |
! | GTTGTCAAATGTGGTTGATG+TGG | - | chr4.1:87127950-87127969 | MS.gene054590:CDS | 40.0% |
! | TAAGCGCAGTTTTCTTGCTA+AGG | + | chr4.1:87129726-87129745 | None:intergenic | 40.0% |
! | TATCAGCTTGGTGAGAATGT+TGG | - | chr4.1:87129933-87129952 | MS.gene054590:intron | 40.0% |
! | TATTTTCCAAATTGCCCCTC+AGG | - | chr4.1:87130634-87130653 | MS.gene054590:intron | 40.0% |
! | TCAAGAAAGAAAGCGTGCTT+TGG | - | chr4.1:87129390-87129409 | MS.gene054590:intron | 40.0% |
! | TCTATCACTATCGACTGATC+GGG | + | chr4.1:87129898-87129917 | None:intergenic | 40.0% |
! | TTGGTGAGAATGTTGGTTGA+TGG | - | chr4.1:87129940-87129959 | MS.gene054590:intron | 40.0% |
!! | CATCAAAAACCTTGATGGTG+TGG | - | chr4.1:87127994-87128013 | MS.gene054590:CDS | 40.0% |
!! | CCGAAGTTTTTCAGAAAGAG+AGG | - | chr4.1:87131554-87131573 | MS.gene054590:CDS | 40.0% |
!! | CTAATGTTGTTCTGGAACCT+AGG | - | chr4.1:87128798-87128817 | MS.gene054590:intron | 40.0% |
!! | GCAATGTTCTCTAAAACTGC+AGG | - | chr4.1:87130793-87130812 | MS.gene054590:intron | 40.0% |
!! | TTCCGTGTTGGTTTAAGTCA+TGG | - | chr4.1:87128128-87128147 | MS.gene054590:CDS | 40.0% |
!!! | CTAGCTTTTGAGGTTGAGTT+AGG | - | chr4.1:87130227-87130246 | MS.gene054590:intron | 40.0% |
AACCTGCTGCAGAAAAACCT+CGG | - | chr4.1:87131519-87131538 | MS.gene054590:CDS | 45.0% | |
AAGAAAACTGCGCTTAGTGG+TGG | - | chr4.1:87129730-87129749 | MS.gene054590:intron | 45.0% | |
ACCTGCACGAATGAATTGTC+AGG | + | chr4.1:87130993-87131012 | None:intergenic | 45.0% | |
ACCTTCGTCTTGAGTGTGAA+AGG | - | chr4.1:87130428-87130447 | MS.gene054590:CDS | 45.0% | |
AGAAGAAAGCGATGCTTTGG+TGG | - | chr4.1:87131058-87131077 | MS.gene054590:intron | 45.0% | |
AGCAAGAAAACTGCGCTTAG+TGG | - | chr4.1:87129727-87129746 | MS.gene054590:intron | 45.0% | |
AGTTCCTTCGTATCGTGAAG+AGG | - | chr4.1:87128844-87128863 | MS.gene054590:intron | 45.0% | |
ATACGAAGGAACTGGGTTTC+TGG | + | chr4.1:87128837-87128856 | None:intergenic | 45.0% | |
CAAAGACTACGTTAGTGGTG+AGG | + | chr4.1:87128534-87128553 | None:intergenic | 45.0% | |
CAAGTTCATCATCATGGGGA+AGG | - | chr4.1:87129230-87129249 | MS.gene054590:intron | 45.0% | |
CTTACCTCTTCACGATACGA+AGG | + | chr4.1:87128851-87128870 | None:intergenic | 45.0% | |
CTTCACGATACGAAGGAACT+GGG | + | chr4.1:87128844-87128863 | None:intergenic | 45.0% | |
GGCTAGAGAACAAAGACTTG+AGG | - | chr4.1:87127729-87127748 | MS.gene054590:CDS | 45.0% | |
GGTCATATCTCTAGCTGATG+TGG | + | chr4.1:87130157-87130176 | None:intergenic | 45.0% | |
GTGACTCTGACTCAAGAAAG+AGG | - | chr4.1:87128928-87128947 | MS.gene054590:intron | 45.0% | |
GTGGCCTAAAATGTTGTTGC+GGG | - | chr4.1:87128013-87128032 | MS.gene054590:CDS | 45.0% | |
TACTGCAGTTGAGCCAAAAG+AGG | - | chr4.1:87131280-87131299 | MS.gene054590:intron | 45.0% | |
TCAACCTCAAAAGCTAGCAG+AGG | + | chr4.1:87130224-87130243 | None:intergenic | 45.0% | |
TCACACTCAAGACGAAGGTT+GGG | + | chr4.1:87130427-87130446 | None:intergenic | 45.0% | |
TCCTGACAATTCATTCGTGC+AGG | - | chr4.1:87130989-87131008 | MS.gene054590:intron | 45.0% | |
TCGTATCGTGAAGAGGTAAG+CGG | - | chr4.1:87128851-87128870 | MS.gene054590:intron | 45.0% | |
TCTTCACGATACGAAGGAAC+TGG | + | chr4.1:87128845-87128864 | None:intergenic | 45.0% | |
TGTTCCTCGCAAAATCTCCT+TGG | + | chr4.1:87129637-87129656 | None:intergenic | 45.0% | |
TTCACACTCAAGACGAAGGT+TGG | + | chr4.1:87130428-87130447 | None:intergenic | 45.0% | |
! | AGCCGCTTCATACTTGTTAC+TGG | + | chr4.1:87127713-87127732 | None:intergenic | 45.0% |
! | CATTTTAGGCCACACCATCA+AGG | + | chr4.1:87128006-87128025 | None:intergenic | 45.0% |
! | GGTTGATGTGGAATCAATCG+TGG | - | chr4.1:87127962-87127981 | MS.gene054590:CDS | 45.0% |
! | TCTTCCAAGGAGATTTTGCG+AGG | - | chr4.1:87129630-87129649 | MS.gene054590:intron | 45.0% |
!! | GTTGTCAACTTTGGCTTTCG+TGG | - | chr4.1:87128195-87128214 | MS.gene054590:CDS | 45.0% |
!! | TCAACTTTGGCTTTCGTGGT+CGG | - | chr4.1:87128199-87128218 | MS.gene054590:CDS | 45.0% |
!!! | TCTTCGTGTGAGCTAGCTTT+TGG | - | chr4.1:87130518-87130537 | MS.gene054590:intron | 45.0% |
AAGCTAGCAGAGGAGACAAG+AGG | + | chr4.1:87130214-87130233 | None:intergenic | 50.0% | |
ACATGTGGCTGCAACCTCAA+AGG | + | chr4.1:87128453-87128472 | None:intergenic | 50.0% | |
ACTTATCACGCCACCTGCAA+AGG | - | chr4.1:87130400-87130419 | MS.gene054590:intron | 50.0% | |
AGCAGAGGAGACAAGAGGTA+AGG | + | chr4.1:87130209-87130228 | None:intergenic | 50.0% | |
AGCGATGCTTTGGTGGAAGA+AGG | - | chr4.1:87131065-87131084 | MS.gene054590:intron | 50.0% | |
AGTTTCCCTGAGGGGCAATT+TGG | + | chr4.1:87130643-87130662 | None:intergenic | 50.0% | |
CACACTCAAGACGAAGGTTG+GGG | + | chr4.1:87130426-87130445 | None:intergenic | 50.0% | |
CCTCGAAACTGTGAAACCAG+AGG | - | chr4.1:87131310-87131329 | MS.gene054590:intron | 50.0% | |
GCCTTTCACACTCAAGACGA+AGG | + | chr4.1:87130432-87130451 | None:intergenic | 50.0% | |
GTTCATCATCATGGGGAAGG+TGG | - | chr4.1:87129233-87129252 | MS.gene054590:intron | 50.0% | |
TCAGTTACGCTTACGTTGCG+AGG | - | chr4.1:87129338-87129357 | MS.gene054590:intron | 50.0% | |
TTTGCAGGTGGCGTGATAAG+TGG | + | chr4.1:87130401-87130420 | None:intergenic | 50.0% | |
! | CCTCTGGTTTCACAGTTTCG+AGG | + | chr4.1:87131313-87131332 | None:intergenic | 50.0% |
! | TCGAGGTGTGCATCCTCTTT+TGG | + | chr4.1:87131296-87131315 | None:intergenic | 50.0% |
! | TTCCGAGGTTTTTCTGCAGC+AGG | + | chr4.1:87131524-87131543 | None:intergenic | 50.0% |
! | TTTGAGGTTGCAGCCACATG+TGG | - | chr4.1:87128452-87128471 | MS.gene054590:intron | 50.0% |
!!! | GGCCAGACCCACTTGTTTTT+TGG | - | chr4.1:87130814-87130833 | MS.gene054590:intron | 50.0% |
!!! | GTCTCCTCTGCTAGCTTTTG+AGG | - | chr4.1:87130217-87130236 | MS.gene054590:intron | 50.0% |
!!! | TTCGGAGCTCGTTTTTTCCG+AGG | + | chr4.1:87131539-87131558 | None:intergenic | 50.0% |
AAACTGCGCTTAGTGGTGGC+TGG | - | chr4.1:87129734-87129753 | MS.gene054590:intron | 55.0% | |
ACCTCTTCCGCAACTGTGGA+AGG | + | chr4.1:87129204-87129223 | None:intergenic | 55.0% | |
ACCTTCCACAGTTGCGGAAG+AGG | - | chr4.1:87129200-87129219 | MS.gene054590:intron | 55.0% | |
ACGTTAGTGGTGAGGGACAC+AGG | + | chr4.1:87128526-87128545 | None:intergenic | 55.0% | |
CACAGTTGCGGAAGAGGTCA+AGG | - | chr4.1:87129206-87129225 | MS.gene054590:intron | 55.0% | |
CTTGACCTCTTCCGCAACTG+TGG | + | chr4.1:87129208-87129227 | None:intergenic | 55.0% | |
GCACAGACCTTCCACAGTTG+CGG | - | chr4.1:87129194-87129213 | MS.gene054590:intron | 55.0% | |
GGCAACTTTGTAGCTGCCTC+TGG | + | chr4.1:87131329-87131348 | None:intergenic | 55.0% | |
AAGGTTGGGGCCTTTGCAGG+TGG | + | chr4.1:87130413-87130432 | None:intergenic | 60.0% | |
ACGAAGGTTGGGGCCTTTGC+AGG | + | chr4.1:87130416-87130435 | None:intergenic | 60.0% | |
GCAGGTGGCGTGATAAGTGG+TGG | + | chr4.1:87130398-87130417 | None:intergenic | 60.0% | |
! | GCGTGCTTTGGATGCTGCAG+AGG | - | chr4.1:87129402-87129421 | MS.gene054590:intron | 60.0% |
!! | CTGGCACGAGAAGAGCGCCT+AGG | + | chr4.1:87128818-87128837 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 87127688 | 87131580 | 87127688 | ID=MS.gene054590 |
chr4.1 | mRNA | 87127688 | 87131580 | 87127688 | ID=MS.gene054590.t1;Parent=MS.gene054590 |
chr4.1 | exon | 87131497 | 87131580 | 87131497 | ID=MS.gene054590.t1.exon1;Parent=MS.gene054590.t1 |
chr4.1 | CDS | 87131497 | 87131580 | 87131497 | ID=cds.MS.gene054590.t1;Parent=MS.gene054590.t1 |
chr4.1 | exon | 87130584 | 87130649 | 87130584 | ID=MS.gene054590.t1.exon2;Parent=MS.gene054590.t1 |
chr4.1 | CDS | 87130584 | 87130649 | 87130584 | ID=cds.MS.gene054590.t1;Parent=MS.gene054590.t1 |
chr4.1 | exon | 87130403 | 87130498 | 87130403 | ID=MS.gene054590.t1.exon3;Parent=MS.gene054590.t1 |
chr4.1 | CDS | 87130403 | 87130498 | 87130403 | ID=cds.MS.gene054590.t1;Parent=MS.gene054590.t1 |
chr4.1 | exon | 87130017 | 87130078 | 87130017 | ID=MS.gene054590.t1.exon4;Parent=MS.gene054590.t1 |
chr4.1 | CDS | 87130017 | 87130078 | 87130017 | ID=cds.MS.gene054590.t1;Parent=MS.gene054590.t1 |
chr4.1 | exon | 87129761 | 87129926 | 87129761 | ID=MS.gene054590.t1.exon5;Parent=MS.gene054590.t1 |
chr4.1 | CDS | 87129761 | 87129926 | 87129761 | ID=cds.MS.gene054590.t1;Parent=MS.gene054590.t1 |
chr4.1 | exon | 87129434 | 87129640 | 87129434 | ID=MS.gene054590.t1.exon6;Parent=MS.gene054590.t1 |
chr4.1 | CDS | 87129434 | 87129640 | 87129434 | ID=cds.MS.gene054590.t1;Parent=MS.gene054590.t1 |
chr4.1 | exon | 87127688 | 87128257 | 87127688 | ID=MS.gene054590.t1.exon7;Parent=MS.gene054590.t1 |
chr4.1 | CDS | 87127688 | 87128257 | 87127688 | ID=cds.MS.gene054590.t1;Parent=MS.gene054590.t1 |
Gene Sequence |
Protein sequence |