Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054715.t1 | XP_024642224.1 | 72.2 | 468 | 128 | 1 | 1 | 466 | 1 | 468 | 5.60E-202 | 713.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054715.t1 | Q9SWG3 | 37.1 | 456 | 271 | 8 | 3 | 449 | 25 | 473 | 2.0e-83 | 311.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054715.t1 | A0A2Z6M8U9 | 68.9 | 466 | 141 | 1 | 1 | 466 | 1 | 462 | 7.7e-193 | 682.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene054715.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054715.t1 | MTR_0856s0010 | 59.375 | 160 | 63 | 1 | 1 | 158 | 1 | 160 | 2.49e-58 | 190 |
| MS.gene054715.t1 | MTR_6g051425 | 32.342 | 269 | 168 | 6 | 42 | 300 | 27 | 291 | 1.06e-37 | 141 |
| MS.gene054715.t1 | MTR_7g115320 | 66.265 | 83 | 25 | 1 | 119 | 201 | 6 | 85 | 7.22e-28 | 106 |
| MS.gene054715.t1 | MTR_0558s0020 | 25.869 | 259 | 165 | 6 | 36 | 269 | 40 | 296 | 1.72e-20 | 92.0 |
| MS.gene054715.t1 | MTR_4g035820 | 29.368 | 269 | 158 | 11 | 25 | 273 | 68 | 324 | 4.41e-20 | 94.0 |
| MS.gene054715.t1 | MTR_1g008290 | 32.558 | 129 | 84 | 1 | 97 | 225 | 19 | 144 | 3.82e-19 | 84.3 |
| MS.gene054715.t1 | MTR_8g446020 | 28.177 | 181 | 124 | 3 | 93 | 269 | 78 | 256 | 7.81e-18 | 83.6 |
| MS.gene054715.t1 | MTR_1g070355 | 26.496 | 234 | 160 | 7 | 38 | 263 | 80 | 309 | 2.21e-17 | 85.5 |
| MS.gene054715.t1 | MTR_7g446480 | 31.285 | 179 | 121 | 2 | 105 | 281 | 140 | 318 | 5.03e-17 | 82.4 |
| MS.gene054715.t1 | MTR_7g446510 | 30.726 | 179 | 122 | 2 | 105 | 281 | 155 | 333 | 5.69e-17 | 82.4 |
| MS.gene054715.t1 | MTR_7g446060 | 43.662 | 71 | 40 | 0 | 126 | 196 | 18 | 88 | 5.86e-17 | 77.8 |
| MS.gene054715.t1 | MTR_5g023310 | 29.487 | 156 | 43 | 2 | 164 | 319 | 16 | 104 | 2.67e-13 | 66.6 |
| MS.gene054715.t1 | MTR_6g022070 | 25.301 | 166 | 120 | 1 | 323 | 488 | 1 | 162 | 4.09e-13 | 70.9 |
| MS.gene054715.t1 | MTR_5g076070 | 25.000 | 232 | 160 | 6 | 35 | 257 | 56 | 282 | 1.07e-12 | 68.9 |
| MS.gene054715.t1 | MTR_6g090505 | 26.111 | 180 | 127 | 3 | 93 | 268 | 53 | 230 | 1.32e-12 | 69.7 |
| MS.gene054715.t1 | MTR_7g446520 | 28.477 | 151 | 107 | 1 | 122 | 271 | 165 | 315 | 2.38e-12 | 68.6 |
| MS.gene054715.t1 | MTR_1g083640 | 23.478 | 230 | 149 | 6 | 36 | 240 | 55 | 282 | 1.00e-11 | 65.9 |
| MS.gene054715.t1 | MTR_1g013060 | 26.066 | 211 | 140 | 6 | 31 | 228 | 23 | 230 | 1.45e-11 | 64.7 |
| MS.gene054715.t1 | MTR_1g019850 | 31.126 | 151 | 93 | 5 | 14 | 160 | 53 | 196 | 9.93e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054715.t1 | AT4G15090 | 36.383 | 459 | 280 | 7 | 3 | 454 | 25 | 478 | 7.81e-98 | 313 |
| MS.gene054715.t1 | AT4G15090 | 36.383 | 459 | 280 | 7 | 3 | 454 | 25 | 478 | 7.81e-98 | 313 |
| MS.gene054715.t1 | AT4G15090 | 36.383 | 459 | 280 | 7 | 3 | 454 | 25 | 478 | 7.81e-98 | 313 |
| MS.gene054715.t1 | AT4G15090 | 36.383 | 459 | 280 | 7 | 3 | 454 | 25 | 478 | 7.81e-98 | 313 |
| MS.gene054715.t1 | AT4G15090 | 36.383 | 459 | 280 | 7 | 3 | 454 | 25 | 478 | 7.81e-98 | 313 |
| MS.gene054715.t1 | AT4G38180 | 35.398 | 452 | 274 | 7 | 26 | 462 | 62 | 510 | 9.01e-93 | 299 |
| MS.gene054715.t1 | AT1G52520 | 34.571 | 431 | 267 | 7 | 32 | 459 | 85 | 503 | 2.75e-86 | 280 |
| MS.gene054715.t1 | AT1G76320 | 31.659 | 458 | 299 | 6 | 36 | 490 | 1 | 447 | 1.54e-79 | 261 |
| MS.gene054715.t1 | AT3G22170 | 32.473 | 465 | 271 | 6 | 26 | 471 | 64 | 504 | 3.40e-79 | 264 |
| MS.gene054715.t1 | AT3G22170 | 32.473 | 465 | 271 | 6 | 26 | 471 | 64 | 504 | 3.40e-79 | 264 |
| MS.gene054715.t1 | AT1G76320 | 31.659 | 458 | 299 | 6 | 36 | 490 | 1 | 447 | 3.88e-79 | 261 |
| MS.gene054715.t1 | AT1G76320 | 31.659 | 458 | 299 | 6 | 36 | 490 | 1 | 447 | 4.42e-79 | 261 |
| MS.gene054715.t1 | AT1G76320 | 31.659 | 458 | 299 | 6 | 36 | 490 | 1 | 447 | 4.42e-79 | 261 |
| MS.gene054715.t1 | AT1G80010 | 32.068 | 474 | 290 | 10 | 16 | 464 | 75 | 541 | 2.52e-76 | 254 |
| MS.gene054715.t1 | AT2G27110 | 33.408 | 449 | 266 | 11 | 10 | 454 | 28 | 447 | 1.71e-74 | 251 |
| MS.gene054715.t1 | AT2G27110 | 33.408 | 449 | 266 | 11 | 10 | 454 | 28 | 447 | 1.71e-74 | 251 |
| MS.gene054715.t1 | AT3G06250 | 32.215 | 447 | 255 | 11 | 29 | 471 | 187 | 589 | 2.61e-68 | 233 |
| MS.gene054715.t1 | AT3G06250 | 32.215 | 447 | 255 | 11 | 29 | 471 | 187 | 589 | 2.61e-68 | 233 |
| MS.gene054715.t1 | AT3G06250 | 32.215 | 447 | 255 | 11 | 29 | 471 | 187 | 589 | 2.61e-68 | 233 |
| MS.gene054715.t1 | AT4G19990 | 31.004 | 458 | 263 | 9 | 15 | 454 | 18 | 440 | 2.07e-66 | 228 |
| MS.gene054715.t1 | AT4G19990 | 31.004 | 458 | 263 | 9 | 15 | 454 | 4 | 426 | 2.25e-66 | 228 |
| MS.gene054715.t1 | AT4G19990 | 31.004 | 458 | 263 | 9 | 15 | 454 | 4 | 426 | 2.25e-66 | 228 |
| MS.gene054715.t1 | AT4G19990 | 31.004 | 458 | 263 | 9 | 15 | 454 | 4 | 426 | 2.59e-66 | 228 |
| MS.gene054715.t1 | AT4G19990 | 31.004 | 458 | 263 | 9 | 15 | 454 | 4 | 426 | 4.99e-66 | 227 |
| MS.gene054715.t1 | AT4G19990 | 31.004 | 458 | 263 | 9 | 15 | 454 | 4 | 426 | 4.99e-66 | 227 |
| MS.gene054715.t1 | AT2G27110 | 40.840 | 262 | 150 | 3 | 194 | 454 | 45 | 302 | 1.00e-64 | 222 |
| MS.gene054715.t1 | AT5G18960 | 30.243 | 453 | 255 | 10 | 31 | 471 | 210 | 613 | 5.76e-64 | 221 |
| MS.gene054715.t1 | AT5G18960 | 30.243 | 453 | 255 | 10 | 31 | 471 | 210 | 613 | 5.76e-64 | 221 |
| MS.gene054715.t1 | AT2G32250 | 31.808 | 459 | 261 | 8 | 22 | 469 | 24 | 441 | 1.59e-63 | 220 |
| MS.gene054715.t1 | AT2G32250 | 31.808 | 459 | 261 | 8 | 22 | 469 | 24 | 441 | 2.08e-63 | 220 |
| MS.gene054715.t1 | AT2G32250 | 31.808 | 459 | 261 | 8 | 22 | 469 | 24 | 441 | 2.08e-63 | 220 |
| MS.gene054715.t1 | AT2G32250 | 31.808 | 459 | 261 | 8 | 22 | 469 | 24 | 441 | 2.38e-63 | 220 |
| MS.gene054715.t1 | AT2G32250 | 31.808 | 459 | 261 | 8 | 22 | 469 | 24 | 441 | 2.38e-63 | 220 |
| MS.gene054715.t1 | AT2G32250 | 31.808 | 459 | 261 | 8 | 22 | 469 | 24 | 441 | 2.38e-63 | 220 |
| MS.gene054715.t1 | AT2G32250 | 31.746 | 441 | 253 | 7 | 36 | 469 | 1 | 400 | 1.38e-61 | 215 |
| MS.gene054715.t1 | AT2G32250 | 31.746 | 441 | 253 | 7 | 36 | 469 | 1 | 400 | 1.51e-61 | 214 |
| MS.gene054715.t1 | AT4G19990 | 31.807 | 393 | 216 | 8 | 79 | 454 | 12 | 369 | 1.65e-60 | 211 |
| MS.gene054715.t1 | AT4G38170 | 37.838 | 259 | 155 | 4 | 206 | 462 | 21 | 275 | 1.58e-56 | 197 |
| MS.gene054715.t1 | AT1G10240 | 28.767 | 438 | 280 | 12 | 32 | 448 | 48 | 474 | 1.22e-47 | 175 |
| MS.gene054715.t1 | AT1G10240 | 28.767 | 438 | 280 | 12 | 32 | 448 | 48 | 474 | 1.22e-47 | 175 |
| MS.gene054715.t1 | AT5G28530 | 26.782 | 463 | 306 | 12 | 32 | 469 | 55 | 509 | 5.31e-44 | 165 |
| MS.gene054715.t1 | AT5G28530 | 25.942 | 451 | 304 | 10 | 32 | 458 | 55 | 499 | 4.11e-43 | 162 |
| MS.gene054715.t1 | AT5G28530 | 25.942 | 451 | 304 | 10 | 32 | 458 | 55 | 499 | 4.11e-43 | 162 |
| MS.gene054715.t1 | AT5G28530 | 23.297 | 455 | 269 | 17 | 32 | 469 | 55 | 446 | 6.55e-18 | 87.0 |
| MS.gene054715.t1 | AT5G28530 | 22.348 | 443 | 267 | 15 | 32 | 458 | 55 | 436 | 4.20e-17 | 84.7 |
Find 76 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGTCAATCAACTTTATT+TGG | 0.088524 | 5.3:+32850814 | MS.gene054715:CDS |
| TAAAGAATATGCTTCTAAAA+AGG | 0.156428 | 5.3:+32850129 | MS.gene054715:CDS |
| AGAGTTGCATATGAATATTT+TGG | 0.210639 | 5.3:+32850712 | MS.gene054715:CDS |
| TTCCCATCCTCTCCTTTCTT+TGG | 0.214975 | 5.3:-32850175 | None:intergenic |
| TCACATGAGTATATTCTTCT+TGG | 0.222421 | 5.3:-32851436 | None:intergenic |
| CGCCCGCTTCATCATTGATT+TGG | 0.236954 | 5.3:-32850441 | None:intergenic |
| TTCACGTACGAAACGTGTTT+TGG | 0.250219 | 5.3:+32850674 | MS.gene054715:CDS |
| AGCATACATGCTTTCTTTGA+TGG | 0.264138 | 5.3:+32851264 | MS.gene054715:CDS |
| AAAAGGCATGTCATATTTAT+TGG | 0.272458 | 5.3:-32850767 | None:intergenic |
| TGAAGACACTTCCGACTAAA+AGG | 0.299870 | 5.3:+32850263 | MS.gene054715:CDS |
| ACATAATTGGCACCCATCTA+TGG | 0.318132 | 5.3:-32851194 | None:intergenic |
| CCTGAAAAGCTTAGTAGATA+TGG | 0.320188 | 5.3:+32851027 | MS.gene054715:CDS |
| AACTTAGCAGTAATCTTTGC+AGG | 0.345757 | 5.3:-32850295 | None:intergenic |
| TCACAAACATCAAAATTGTT+TGG | 0.358937 | 5.3:-32849995 | None:intergenic |
| AGTTGGGAAAAGATGAATTA+TGG | 0.360559 | 5.3:+32850314 | MS.gene054715:CDS |
| TTTCTTCTATGATATAGATT+TGG | 0.365387 | 5.3:+32850642 | MS.gene054715:CDS |
| AACTTTATTTGGATGTGGTC+TGG | 0.372803 | 5.3:+32850825 | MS.gene054715:CDS |
| CAGGCTATTGTTAGAGATGC+TGG | 0.377843 | 5.3:+32850484 | MS.gene054715:CDS |
| CTTGAATAACCTTGACTTAG+TGG | 0.398152 | 5.3:-32850380 | None:intergenic |
| AATGGAGTTGATAGCTTTAG+TGG | 0.398440 | 5.3:+32850037 | MS.gene054715:CDS |
| GCAAGTTGCGAGCCTTCATC+AGG | 0.400046 | 5.3:+32850067 | MS.gene054715:CDS |
| TGTACAATGAGCGCCATAGA+TGG | 0.404513 | 5.3:+32851181 | MS.gene054715:CDS |
| GGAATTATGTTAACAGAGAA+AGG | 0.417721 | 5.3:+32850545 | MS.gene054715:CDS |
| TGCAAAGATTACTGCTAAGT+TGG | 0.422853 | 5.3:+32850297 | MS.gene054715:CDS |
| CTAATTGTGTGAGAGTGGTT+AGG | 0.441187 | 5.3:-32850355 | None:intergenic |
| ATTTACAAATTGATGCAAAC+TGG | 0.443341 | 5.3:-32851304 | None:intergenic |
| CACCACCTATGTCTAGTAGT+AGG | 0.443756 | 5.3:-32850979 | None:intergenic |
| AACAGAGAAAGGCGTATCAT+TGG | 0.454227 | 5.3:+32850556 | MS.gene054715:CDS |
| CAATCAACTTTATTTGGATG+TGG | 0.455938 | 5.3:+32850820 | MS.gene054715:CDS |
| CTAGACATAGGTGGTGTTTG+TGG | 0.469131 | 5.3:+32850986 | MS.gene054715:CDS |
| CACCTCATCTACATATGAAA+AGG | 0.477054 | 5.3:-32850095 | None:intergenic |
| TTGAATAACCTTGACTTAGT+GGG | 0.483800 | 5.3:-32850379 | None:intergenic |
| CACTAAGTCAAGGTTATTCA+AGG | 0.496285 | 5.3:+32850381 | MS.gene054715:CDS |
| GCAAAGATTACTGCTAAGTT+GGG | 0.503061 | 5.3:+32850298 | MS.gene054715:CDS |
| ACACCAACAAATGCAGCAAA+AGG | 0.504617 | 5.3:-32850784 | None:intergenic |
| AGAGAAGGACATCATGTGTC+GGG | 0.510956 | 5.3:+32850226 | MS.gene054715:CDS |
| TATTATCACTGACCAATGTA+AGG | 0.514760 | 5.3:+32850927 | MS.gene054715:CDS |
| GAAAAGGACATCCCTGATGA+AGG | 0.521924 | 5.3:-32850079 | None:intergenic |
| TTGAGCTGGAACATAATGAT+TGG | 0.533395 | 5.3:+32851148 | MS.gene054715:CDS |
| GAAAGGCGTATCATTGGAAA+AGG | 0.534489 | 5.3:+32850562 | MS.gene054715:CDS |
| TCATGGCTTCGTTGTATGCA+AGG | 0.543000 | 5.3:+32850889 | MS.gene054715:CDS |
| ACACCAAAGAAAGGAGAGGA+TGG | 0.546360 | 5.3:+32850172 | MS.gene054715:CDS |
| AAGATTAGAACACCAAAGAA+AGG | 0.546564 | 5.3:+32850163 | MS.gene054715:CDS |
| ATCCAAATCAATGATGAAGC+GGG | 0.553848 | 5.3:+32850439 | MS.gene054715:CDS |
| AACATAATGATTGGCTGAGT+GGG | 0.556371 | 5.3:+32851157 | MS.gene054715:CDS |
| TGGACACAACAATTCCTTGT+GGG | 0.558651 | 5.3:+32851387 | MS.gene054715:CDS |
| GTACAATGAGCGCCATAGAT+GGG | 0.559433 | 5.3:+32851182 | MS.gene054715:CDS |
| GTGGTGTTTGTGGCACATAA+TGG | 0.560269 | 5.3:+32850996 | MS.gene054715:CDS |
| ATGCAAGGGAAGGCTCCTGC+AGG | 0.564052 | 5.3:+32850904 | MS.gene054715:CDS |
| ATCATTGGAAAAGGAGGAGA+CGG | 0.566514 | 5.3:+32850571 | MS.gene054715:CDS |
| ACCACCTATGTCTAGTAGTA+GGG | 0.566962 | 5.3:-32850978 | None:intergenic |
| ATGCTATCTTGCTCAAGAGA+AGG | 0.588657 | 5.3:+32850211 | MS.gene054715:CDS |
| CACCAAAGAAAGGAGAGGAT+GGG | 0.592185 | 5.3:+32850173 | MS.gene054715:CDS |
| GGAAGTGTCTTCAATGTACA+TGG | 0.592537 | 5.3:-32850253 | None:intergenic |
| AAGAGAAGGACATCATGTGT+CGG | 0.593763 | 5.3:+32850225 | MS.gene054715:CDS |
| CAAATAAAGTTGATTGACCA+TGG | 0.595477 | 5.3:-32850813 | None:intergenic |
| TGGTCAGTGATAATACCTGC+AGG | 0.597873 | 5.3:-32850919 | None:intergenic |
| TGGGGCTAATTGTGTGAGAG+TGG | 0.603064 | 5.3:-32850360 | None:intergenic |
| TGAATAACCTTGACTTAGTG+GGG | 0.603118 | 5.3:-32850378 | None:intergenic |
| TCAATGATGAAGCGGGCGTG+AGG | 0.603491 | 5.3:+32850446 | MS.gene054715:CDS |
| AATCCAAATCAATGATGAAG+CGG | 0.605155 | 5.3:+32850438 | MS.gene054715:CDS |
| TATTCCCTACTACTAGACAT+AGG | 0.615682 | 5.3:+32850974 | MS.gene054715:CDS |
| CATGGCTTCGTTGTATGCAA+GGG | 0.615709 | 5.3:+32850890 | MS.gene054715:CDS |
| GCTTCGTTGTATGCAAGGGA+AGG | 0.629895 | 5.3:+32850894 | MS.gene054715:CDS |
| AGGCGTATCATTGGAAAAGG+AGG | 0.630655 | 5.3:+32850565 | MS.gene054715:CDS |
| ATCGACGAGCTTGACCCACA+AGG | 0.631029 | 5.3:-32851401 | None:intergenic |
| TAGAACACCAAAGAAAGGAG+AGG | 0.650973 | 5.3:+32850168 | MS.gene054715:CDS |
| ATGGACACAACAATTCCTTG+TGG | 0.653497 | 5.3:+32851386 | MS.gene054715:CDS |
| GAACATAATGATTGGCTGAG+TGG | 0.655057 | 5.3:+32851156 | MS.gene054715:CDS |
| CAATTAGCCCCACTAAGTCA+AGG | 0.658920 | 5.3:+32850371 | MS.gene054715:CDS |
| CAAGTTGCGAGCCTTCATCA+GGG | 0.660640 | 5.3:+32850068 | MS.gene054715:CDS |
| TTTGTTGGTGTGAATCACCA+TGG | 0.705691 | 5.3:+32850796 | MS.gene054715:CDS |
| GCTATTGTTAGAGATGCTGG+AGG | 0.707490 | 5.3:+32850487 | MS.gene054715:CDS |
| AAGACACAGAGTCCTTTGTG+TGG | 0.707585 | 5.3:+32850857 | MS.gene054715:CDS |
| TCCCTACTACTAGACATAGG+TGG | 0.718251 | 5.3:+32850977 | MS.gene054715:CDS |
| CTGGTATGTCGACAACACAA+CGG | 0.726317 | 5.3:+32851235 | MS.gene054715:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGATTTTTTCAACATAAT+TGG | - | chr5.3:32851210-32851229 | None:intergenic | 15.0% |
| !!! | TATGTTGAAAAAATCTTTTT+GGG | + | chr5.3:32851212-32851231 | MS.gene054715:CDS | 15.0% |
| !!! | TTATGTTGAAAAAATCTTTT+TGG | + | chr5.3:32851211-32851230 | MS.gene054715:CDS | 15.0% |
| !! | TTTCTTCTATGATATAGATT+TGG | + | chr5.3:32850642-32850661 | MS.gene054715:CDS | 20.0% |
| !!! | AAAGAATATGCTTCTAAAAA+GGG | + | chr5.3:32850130-32850149 | MS.gene054715:CDS | 20.0% |
| !!! | AAATTATTTTTGTCGAATGA+GGG | + | chr5.3:32850606-32850625 | MS.gene054715:CDS | 20.0% |
| !!! | TAAAGAATATGCTTCTAAAA+AGG | + | chr5.3:32850129-32850148 | MS.gene054715:CDS | 20.0% |
| !!! | TAAATTATTTTTGTCGAATG+AGG | + | chr5.3:32850605-32850624 | MS.gene054715:CDS | 20.0% |
| ! | ATTTACAAATTGATGCAAAC+TGG | - | chr5.3:32851307-32851326 | None:intergenic | 25.0% |
| ! | TCACAAACATCAAAATTGTT+TGG | - | chr5.3:32849998-32850017 | None:intergenic | 25.0% |
| !! | AAAAGGCATGTCATATTTAT+TGG | - | chr5.3:32850770-32850789 | None:intergenic | 25.0% |
| !! | AGAGTTGCATATGAATATTT+TGG | + | chr5.3:32850712-32850731 | MS.gene054715:CDS | 25.0% |
| !! | AGTTGCATATGAATATTTTG+GGG | + | chr5.3:32850714-32850733 | MS.gene054715:CDS | 25.0% |
| !! | GAGTTGCATATGAATATTTT+GGG | + | chr5.3:32850713-32850732 | MS.gene054715:CDS | 25.0% |
| !! | TTTTGTTAACAAATTTGAGC+TGG | + | chr5.3:32851134-32851153 | MS.gene054715:CDS | 25.0% |
| !!! | AACAATTTTGATGTTTGTGA+TGG | + | chr5.3:32849998-32850017 | MS.gene054715:CDS | 25.0% |
| AAGATTAGAACACCAAAGAA+AGG | + | chr5.3:32850163-32850182 | MS.gene054715:CDS | 30.0% | |
| AATCCAAATCAATGATGAAG+CGG | + | chr5.3:32850438-32850457 | MS.gene054715:CDS | 30.0% | |
| AGTTGGGAAAAGATGAATTA+TGG | + | chr5.3:32850314-32850333 | MS.gene054715:CDS | 30.0% | |
| CATCTGAATTCGAAGAAAAA+TGG | + | chr5.3:32851106-32851125 | MS.gene054715:CDS | 30.0% | |
| CATGGTCAATCAACTTTATT+TGG | + | chr5.3:32850814-32850833 | MS.gene054715:CDS | 30.0% | |
| GGAATTATGTTAACAGAGAA+AGG | + | chr5.3:32850545-32850564 | MS.gene054715:CDS | 30.0% | |
| TATTATCACTGACCAATGTA+AGG | + | chr5.3:32850927-32850946 | MS.gene054715:CDS | 30.0% | |
| TCACATGAGTATATTCTTCT+TGG | - | chr5.3:32851439-32851458 | None:intergenic | 30.0% | |
| TTGAATAACCTTGACTTAGT+GGG | - | chr5.3:32850382-32850401 | None:intergenic | 30.0% | |
| ! | CAAATAAAGTTGATTGACCA+TGG | - | chr5.3:32850816-32850835 | None:intergenic | 30.0% |
| ! | CAATCAACTTTATTTGGATG+TGG | + | chr5.3:32850820-32850839 | MS.gene054715:CDS | 30.0% |
| ! | CATATCTACTAAGCTTTTCA+GGG | - | chr5.3:32851029-32851048 | None:intergenic | 30.0% |
| ! | CATTTTGTGAAAGAGATGTT+AGG | + | chr5.3:32850524-32850543 | MS.gene054715:CDS | 30.0% |
| ! | CATTTTTCTTCGAATTCAGA+TGG | - | chr5.3:32851108-32851127 | None:intergenic | 30.0% |
| !! | CTTCTAAAAAGGGTTTTGAT+TGG | + | chr5.3:32850140-32850159 | MS.gene054715:CDS | 30.0% |
| !! | TGAAGCTGATTTTCAATCAA+TGG | + | chr5.3:32851367-32851386 | MS.gene054715:CDS | 30.0% |
| !! | TTGAAAAAATCTTTTTGGGC+TGG | + | chr5.3:32851216-32851235 | MS.gene054715:CDS | 30.0% |
| AACTTAGCAGTAATCTTTGC+AGG | - | chr5.3:32850298-32850317 | None:intergenic | 35.0% | |
| AGCATACATGCTTTCTTTGA+TGG | + | chr5.3:32851264-32851283 | MS.gene054715:CDS | 35.0% | |
| ATCCAAATCAATGATGAAGC+GGG | + | chr5.3:32850439-32850458 | MS.gene054715:CDS | 35.0% | |
| CACCTCATCTACATATGAAA+AGG | - | chr5.3:32850098-32850117 | None:intergenic | 35.0% | |
| CACTAAGTCAAGGTTATTCA+AGG | + | chr5.3:32850381-32850400 | MS.gene054715:CDS | 35.0% | |
| CCTGAAAAGCTTAGTAGATA+TGG | + | chr5.3:32851027-32851046 | MS.gene054715:CDS | 35.0% | |
| CTTGAATAACCTTGACTTAG+TGG | - | chr5.3:32850383-32850402 | None:intergenic | 35.0% | |
| GCAAAGATTACTGCTAAGTT+GGG | + | chr5.3:32850298-32850317 | MS.gene054715:CDS | 35.0% | |
| TATTCCCTACTACTAGACAT+AGG | + | chr5.3:32850974-32850993 | MS.gene054715:CDS | 35.0% | |
| TGAATAACCTTGACTTAGTG+GGG | - | chr5.3:32850381-32850400 | None:intergenic | 35.0% | |
| TGATTGAAAAAGCCACACAA+AGG | - | chr5.3:32850872-32850891 | None:intergenic | 35.0% | |
| TGCAAAGATTACTGCTAAGT+TGG | + | chr5.3:32850297-32850316 | MS.gene054715:CDS | 35.0% | |
| TTGAGCTGGAACATAATGAT+TGG | + | chr5.3:32851148-32851167 | MS.gene054715:CDS | 35.0% | |
| ! | AACATAATGATTGGCTGAGT+GGG | + | chr5.3:32851157-32851176 | MS.gene054715:CDS | 35.0% |
| ! | AACTTTATTTGGATGTGGTC+TGG | + | chr5.3:32850825-32850844 | MS.gene054715:CDS | 35.0% |
| ! | CCATATCTACTAAGCTTTTC+AGG | - | chr5.3:32851030-32851049 | None:intergenic | 35.0% |
| ! | GGACAACTTTTCCTTTTAGT+CGG | - | chr5.3:32850277-32850296 | None:intergenic | 35.0% |
| ! | GTCCTTTTCATATGTAGATG+AGG | + | chr5.3:32850093-32850112 | MS.gene054715:CDS | 35.0% |
| !! | AATGGAGTTGATAGCTTTAG+TGG | + | chr5.3:32850037-32850056 | MS.gene054715:CDS | 35.0% |
| !! | ACTAAGCTTTTCAGGGATTT+TGG | - | chr5.3:32851022-32851041 | None:intergenic | 35.0% |
| !! | CATTTTGCATAGCCTTACAT+TGG | - | chr5.3:32850942-32850961 | None:intergenic | 35.0% |
| !!! | GATGTTTGTGATGGTTTTGA+TGG | + | chr5.3:32850007-32850026 | MS.gene054715:CDS | 35.0% |
| !!! | TTGTGTGGCTTTTTCAATCA+TGG | + | chr5.3:32850872-32850891 | MS.gene054715:CDS | 35.0% |
| AAGAGAAGGACATCATGTGT+CGG | + | chr5.3:32850225-32850244 | MS.gene054715:CDS | 40.0% | |
| ACACCAACAAATGCAGCAAA+AGG | - | chr5.3:32850787-32850806 | None:intergenic | 40.0% | |
| ACATAATTGGCACCCATCTA+TGG | - | chr5.3:32851197-32851216 | None:intergenic | 40.0% | |
| ACCACCTATGTCTAGTAGTA+GGG | - | chr5.3:32850981-32851000 | None:intergenic | 40.0% | |
| ATCATTGGAAAAGGAGGAGA+CGG | + | chr5.3:32850571-32850590 | MS.gene054715:CDS | 40.0% | |
| ATGCTATCTTGCTCAAGAGA+AGG | + | chr5.3:32850211-32850230 | MS.gene054715:CDS | 40.0% | |
| ATGGACACAACAATTCCTTG+TGG | + | chr5.3:32851386-32851405 | MS.gene054715:CDS | 40.0% | |
| CTAATTGTGTGAGAGTGGTT+AGG | - | chr5.3:32850358-32850377 | None:intergenic | 40.0% | |
| TAGAACACCAAAGAAAGGAG+AGG | + | chr5.3:32850168-32850187 | MS.gene054715:CDS | 40.0% | |
| TGAAGACACTTCCGACTAAA+AGG | + | chr5.3:32850263-32850282 | MS.gene054715:CDS | 40.0% | |
| TGGACACAACAATTCCTTGT+GGG | + | chr5.3:32851387-32851406 | MS.gene054715:CDS | 40.0% | |
| TTTGTTGGTGTGAATCACCA+TGG | + | chr5.3:32850796-32850815 | MS.gene054715:CDS | 40.0% | |
| ! | AACAGAGAAAGGCGTATCAT+TGG | + | chr5.3:32850556-32850575 | MS.gene054715:CDS | 40.0% |
| ! | ATGCCTTTTGCTGCATTTGT+TGG | + | chr5.3:32850781-32850800 | MS.gene054715:CDS | 40.0% |
| ! | GAAAGGCGTATCATTGGAAA+AGG | + | chr5.3:32850562-32850581 | MS.gene054715:CDS | 40.0% |
| ! | GAACATAATGATTGGCTGAG+TGG | + | chr5.3:32851156-32851175 | MS.gene054715:CDS | 40.0% |
| ! | GAGGATCAACAAGACTTTTC+AGG | + | chr5.3:32850465-32850484 | MS.gene054715:CDS | 40.0% |
| ! | TCACGTACGAAACGTGTTTT+GGG | + | chr5.3:32850675-32850694 | MS.gene054715:CDS | 40.0% |
| ! | TTCACGTACGAAACGTGTTT+TGG | + | chr5.3:32850674-32850693 | MS.gene054715:CDS | 40.0% |
| !! | GGAAGTGTCTTCAATGTACA+TGG | - | chr5.3:32850256-32850275 | None:intergenic | 40.0% |
| !!! | GGTTTTGATGGTGAAGCTAA+TGG | + | chr5.3:32850019-32850038 | MS.gene054715:CDS | 40.0% |
| AAGACACAGAGTCCTTTGTG+TGG | + | chr5.3:32850857-32850876 | MS.gene054715:CDS | 45.0% | |
| ACACCAAAGAAAGGAGAGGA+TGG | + | chr5.3:32850172-32850191 | MS.gene054715:CDS | 45.0% | |
| AGAGAAGGACATCATGTGTC+GGG | + | chr5.3:32850226-32850245 | MS.gene054715:CDS | 45.0% | |
| AGGCGTATCATTGGAAAAGG+AGG | + | chr5.3:32850565-32850584 | MS.gene054715:CDS | 45.0% | |
| CAATTAGCCCCACTAAGTCA+AGG | + | chr5.3:32850371-32850390 | MS.gene054715:CDS | 45.0% | |
| CACCAAAGAAAGGAGAGGAT+GGG | + | chr5.3:32850173-32850192 | MS.gene054715:CDS | 45.0% | |
| CACCACCTATGTCTAGTAGT+AGG | - | chr5.3:32850982-32851001 | None:intergenic | 45.0% | |
| CAGGCTATTGTTAGAGATGC+TGG | + | chr5.3:32850484-32850503 | MS.gene054715:CDS | 45.0% | |
| CATGGCTTCGTTGTATGCAA+GGG | + | chr5.3:32850890-32850909 | MS.gene054715:CDS | 45.0% | |
| CTAGACATAGGTGGTGTTTG+TGG | + | chr5.3:32850986-32851005 | MS.gene054715:CDS | 45.0% | |
| CTGGTATGTCGACAACACAA+CGG | + | chr5.3:32851235-32851254 | MS.gene054715:CDS | 45.0% | |
| GAAAAGGACATCCCTGATGA+AGG | - | chr5.3:32850082-32850101 | None:intergenic | 45.0% | |
| GCTATTGTTAGAGATGCTGG+AGG | + | chr5.3:32850487-32850506 | MS.gene054715:CDS | 45.0% | |
| GTACAATGAGCGCCATAGAT+GGG | + | chr5.3:32851182-32851201 | MS.gene054715:CDS | 45.0% | |
| GTGGTGTTTGTGGCACATAA+TGG | + | chr5.3:32850996-32851015 | MS.gene054715:CDS | 45.0% | |
| TCATGGCTTCGTTGTATGCA+AGG | + | chr5.3:32850889-32850908 | MS.gene054715:CDS | 45.0% | |
| TCCCTACTACTAGACATAGG+TGG | + | chr5.3:32850977-32850996 | MS.gene054715:CDS | 45.0% | |
| TGGTCAGTGATAATACCTGC+AGG | - | chr5.3:32850922-32850941 | None:intergenic | 45.0% | |
| TGTACAATGAGCGCCATAGA+TGG | + | chr5.3:32851181-32851200 | MS.gene054715:CDS | 45.0% | |
| TTCCCATCCTCTCCTTTCTT+TGG | - | chr5.3:32850178-32850197 | None:intergenic | 45.0% | |
| CAAGTTGCGAGCCTTCATCA+GGG | + | chr5.3:32850068-32850087 | MS.gene054715:CDS | 50.0% | |
| GCTTCGTTGTATGCAAGGGA+AGG | + | chr5.3:32850894-32850913 | MS.gene054715:CDS | 50.0% | |
| TGGGGCTAATTGTGTGAGAG+TGG | - | chr5.3:32850363-32850382 | None:intergenic | 50.0% | |
| ! | CGCCCGCTTCATCATTGATT+TGG | - | chr5.3:32850444-32850463 | None:intergenic | 50.0% |
| ATCGACGAGCTTGACCCACA+AGG | - | chr5.3:32851404-32851423 | None:intergenic | 55.0% | |
| GCAAGTTGCGAGCCTTCATC+AGG | + | chr5.3:32850067-32850086 | MS.gene054715:CDS | 55.0% | |
| TCAATGATGAAGCGGGCGTG+AGG | + | chr5.3:32850446-32850465 | MS.gene054715:CDS | 55.0% | |
| ATGCAAGGGAAGGCTCCTGC+AGG | + | chr5.3:32850904-32850923 | MS.gene054715:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 32849986 | 32851458 | 32849986 | ID=MS.gene054715 |
| chr5.3 | mRNA | 32849986 | 32851458 | 32849986 | ID=MS.gene054715.t1;Parent=MS.gene054715 |
| chr5.3 | exon | 32849986 | 32851458 | 32849986 | ID=MS.gene054715.t1.exon1;Parent=MS.gene054715.t1 |
| chr5.3 | CDS | 32849986 | 32851458 | 32849986 | ID=cds.MS.gene054715.t1;Parent=MS.gene054715.t1 |
| Gene Sequence |
| Protein sequence |
