AlfalfaGEDB | MS.gene054755

M. sativa cultivar XinJiangDaYe / MS.gene054755

KEGG: -
GO: GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0048856
PFAM: PF04690.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054755.t1	RHN55623.1	100	118	0	0	1	118	9	126	2.30E-45	191.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054755.t1	Q76EJ0	53.7	121	49	5	1	118	1	117	1.0e-25	117.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054755.t1	G7JWX9	100.0	118	0	0	1	118	9	126	1.7e-45	191.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene054755.t1	TF	C2C2-YABBY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054755.t1	MTR_5g046230	100.000	118	0	0	1	118	9	126	6.50e-84	244
MS.gene054755.t1	MTR_4g114730	37.037	135	56	4	1	118	6	128	2.17e-23	89.7
MS.gene054755.t1	MTR_2g087740	43.284	134	58	6	1	118	3	134	2.14e-21	84.7
MS.gene054755.t1	MTR_4g050300	36.508	126	68	3	1	118	3	124	9.07e-21	82.4
MS.gene054755.t1	MTR_4g101660	38.806	134	64	3	2	118	12	144	2.21e-17	74.7
MS.gene054755.t1	MTR_4g025900	37.692	130	54	4	11	118	25	149	2.66e-17	74.3
MS.gene054755.t1	MTR_5g034030	35.385	130	55	3	9	118	12	132	3.35e-17	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054755.t1	AT1G69180	64.348	115	36	3	6	118	16	127	2.76e-35	119
MS.gene054755.t1	AT1G08465	42.188	128	55	5	4	118	3	124	1.02e-21	85.1
MS.gene054755.t1	AT2G26580	40.678	118	57	3	7	118	7	117	3.54e-21	83.2
MS.gene054755.t1	AT2G26580	40.678	118	57	3	7	118	7	117	3.54e-21	83.2
MS.gene054755.t1	AT2G45190	40.288	139	59	7	2	118	17	153	5.79e-19	79.0
MS.gene054755.t1	AT1G23420	31.250	128	69	3	10	118	20	147	9.70e-13	62.4
MS.gene054755.t1	AT4G00180	32.237	152	65	5	2	118	17	165	1.35e-12	62.4
MS.gene054755.t1	AT1G23420	31.496	127	68	3	11	118	52	178	1.58e-12	62.4

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Find 26 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATGGCGGTGGTCTAG+GGG	0.595027	5.3:-33559664	None:intergenic
ACAACAAATGGCGGTGGTCT+AGG	0.360978	5.3:-33559666	None:intergenic
AGAGAAAGTTACCATGGACT+TGG	0.516644	5.3:+33558886	None:intergenic
AGATGGTGGAACCAAGTCCA+TGG	0.626957	5.3:-33558897	None:intergenic
AGGTTGGCATACCATGCAAG+AGG	0.666035	5.3:+33559244	MS.gene054755:intron
AGTGACTCAGTTGATGTAGT+TGG	0.590905	5.3:-33559639	None:intergenic
AGTTGCAACGAACGTAACAG+AGG	0.710301	5.3:-33558928	None:intergenic
ATGAAACGGTTGTATGCAGA+TGG	0.547267	5.3:-33559874	None:intergenic
ATTATTGAACCTGGAGACTG+AGG	0.580682	5.3:-33559365	None:intergenic
ATTGCACTTACTTCATGAAA+CGG	0.485516	5.3:-33559888	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCGTCTATAATTTCGTAT+AGG	-	chr5.3:33559088-33559107	None:intergenic	30.0%
GATATTTCCTTAGAGAGTAA+TGG	-	chr5.3:33559714-33559733	None:intergenic	30.0%
TTAGAGAGTAATGGTGAAAA+GGG	-	chr5.3:33559705-33559724	None:intergenic	30.0%
CTTAGAGAGTAATGGTGAAA+AGG	-	chr5.3:33559706-33559725	None:intergenic	35.0%
GGGATTTACAGTAGCAAAAA+AGG	+	chr5.3:33559594-33559613	MS.gene054755:CDS	35.0%
TGCTTACGTTTGACAACAAA+TGG	-	chr5.3:33559681-33559700	None:intergenic	35.0%
TTACGTTTGACAACAAATGG+CGG	-	chr5.3:33559678-33559697	None:intergenic	35.0%
ATGAAACGGTTGTATGCAGA+TGG	-	chr5.3:33559877-33559896	None:intergenic	40.0%
ATTATTGAACCTGGAGACTG+AGG	-	chr5.3:33559368-33559387	None:intergenic	40.0%
GGTGAAGTTTACATACAGCT+AGG	-	chr5.3:33558967-33558986	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	33558899	33559903	33558899	ID=MS.gene054755
chr5.3	mRNA	33558899	33559903	33558899	ID=MS.gene054755.t1;Parent=MS.gene054755
chr5.3	exon	33558899	33558970	33558899	ID=MS.gene054755.t1.exon1;Parent=MS.gene054755.t1
chr5.3	CDS	33558899	33558970	33558899	ID=cds.MS.gene054755.t1;Parent=MS.gene054755.t1
chr5.3	exon	33559246	33559377	33559246	ID=MS.gene054755.t1.exon2;Parent=MS.gene054755.t1
chr5.3	CDS	33559246	33559377	33559246	ID=cds.MS.gene054755.t1;Parent=MS.gene054755.t1
chr5.3	exon	33559594	33559693	33559594	ID=MS.gene054755.t1.exon3;Parent=MS.gene054755.t1
chr5.3	CDS	33559594	33559693	33559594	ID=cds.MS.gene054755.t1;Parent=MS.gene054755.t1
chr5.3	exon	33559851	33559903	33559851	ID=MS.gene054755.t1.exon4;Parent=MS.gene054755.t1
chr5.3	CDS	33559851	33559903	33559851	ID=cds.MS.gene054755.t1;Parent=MS.gene054755.t1

Gene Sequence

>MS.gene054755

ATGGACTTGGTTCCACCATCTGATCAACACCTCTGTTACGTTCGTTGCAACTTCTGTAACACTGTCCTAGCTGTATGTAAACTTCACCTTTAATATTATTCATATATCAACCATCCATCATTCTCAACTTGTTAACTTCTTAGTGATTCATAATCATATTATTCTTTTTAATTTTTAAAATAATATCCTATACGAAATTATAGACGAAGTTTACATTTTAATACTGTCTCTAAATTTGGTCACTAGATCAATTTTTTTTTATTAGCTACATATATGGAGTTTATGAAATATCAAATATTATAAATTTTTCTAAAATATGTAGGGTTGTGGTTTGTTATGTTATGTAGGTTGGCATACCATGCAAGAGGCTGCTAGATACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACCACAAGACCACCAAGTTCCAAAAATCAAACTGTTGATCACACCCTCAGTCTCCAGGTTCAATAATTTTGTTTAGTTTTTTTTTTTAATTATTATTATGAACATAACATCTATATTTTTTGTTTTGAGGAAATAACATCTATATATATTTATTCAATAACTTTATTTAGTTTTTTTTTTTTCATATGATGAGTTTTATATGTATTGGTCCTTTTTATTAATTAATTAATTAATATGTAGAAAGAAAAGTAAGAATACTTTTGTTTGTAGCAGGGGATTTACAGTAGCAAAAAAGGCCAACCATCATCTTCTTCTTCACCAACTACATCAACTGAGTCACTGTCCCCTAGACCACCGCCATTTGTTGTCAAACGTAAGCAACCCTTTTCACCATTACTCTCTAAGGAAATATCAAATTACAATTTTATATATATATATATATATATATATATATATTAAGATGCATTTTTCAACTATAACACACACAAAAAAACTTGTCATAATTTGTTATTTTATTATTTCTTTTGCAGCACCTGAGAAGAAGCACCGTCTTCCATCTGCATACAACCGTTTCATGAAGTAA

Protein sequence

>MS.gene054755.t1

MDLVPPSDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPSSKNQTVDHTLSLQGIYSSKKGQPSSSSSPTTSTESLSPRPPPFVVKPPEKKHRLPSAYNRFMK