AlfalfaGEDB | MS.gene054771

M. sativa cultivar XinJiangDaYe / MS.gene054771

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF12819.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054771.t1	XP_003614249.1	90.1	840	76	3	1	840	1	833	0.00E+00	1508.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054771.t1	Q9SCZ4	48.3	822	371	14	33	821	30	830	1.8e-201	704.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054771.t1	G7JY48	90.1	840	76	3	1	840	1	833	0.0e+00	1508.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054771.t1	MTR_5g047060	90.476	840	73	3	1	840	1	833	0.0	1531
MS.gene054771.t1	MTR_5g047110	89.298	841	65	6	1	840	1	817	0.0	1498
MS.gene054771.t1	MTR_7g073660	45.622	868	401	20	1	824	2	842	0.0	681
MS.gene054771.t1	MTR_7g115300	43.354	805	398	19	40	816	40	814	0.0	582
MS.gene054771.t1	MTR_1g080740	41.825	844	425	21	6	818	3	811	0.0	579
MS.gene054771.t1	MTR_6g015805	40.490	857	424	26	2	812	1	817	0.0	568
MS.gene054771.t1	MTR_4g111925	45.315	715	335	17	1	682	2	693	0.0	552
MS.gene054771.t1	MTR_5g047120	41.656	809	407	22	36	818	36	805	0.0	550
MS.gene054771.t1	MTR_7g015550	41.554	811	414	27	31	809	30	812	2.42e-173	524
MS.gene054771.t1	MTR_7g015510	41.481	810	414	27	32	809	31	812	1.87e-172	521

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054771.t1	AT3G51550	47.874	823	373	15	33	821	30	830	0.0	715
MS.gene054771.t1	AT5G39000	45.597	829	390	22	31	830	24	820	0.0	637
MS.gene054771.t1	AT5G38990	44.536	851	419	21	9	830	1	827	0.0	617
MS.gene054771.t1	AT5G28680	40.595	840	424	24	14	816	5	806	0.0	575
MS.gene054771.t1	AT5G28680	40.595	840	424	24	14	816	5	806	0.0	575
MS.gene054771.t1	AT3G04690	40.705	823	410	24	37	817	27	813	0.0	572
MS.gene054771.t1	AT1G30570	37.355	862	421	26	1	810	4	798	2.07e-158	484
MS.gene054771.t1	AT4G39110	38.224	811	413	27	31	810	50	803	8.50e-152	468
MS.gene054771.t1	AT2G21480	37.824	809	415	27	33	810	51	802	7.32e-151	465
MS.gene054771.t1	AT5G61350	37.736	848	444	27	30	831	25	834	4.60e-149	459

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 147 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAGCACAAAAGAAT+CGG	0.497247	5.3:+34277202	None:intergenic
AAACTAAAATTCATCCTCAT+TGG	0.405177	5.3:-34277250	MS.gene054771:CDS
AAAGTGAGACGAGGTTGTTA+TGG	0.494569	5.3:+34276879	None:intergenic
AAATCTGATTTATACTCACT+TGG	0.525825	5.3:-34276491	MS.gene054771:CDS
AAATGAAGGCGTATGAATTT+CGG	0.372253	5.3:+34278273	None:intergenic
AAATGTAAACTGGTTTATCC+TGG	0.478758	5.3:+34277959	None:intergenic
AAATTCATCCTCATTGGATG+TGG	0.531461	5.3:-34277244	MS.gene054771:CDS
AAATTTCTTATGAAATAACT+AGG	0.444596	5.3:-34277612	MS.gene054771:CDS
AACACCAGCCTCATTTGTCA+TGG	0.537264	5.3:-34276760	MS.gene054771:CDS
AACATACCGGTATCATATTT+CGG	0.391505	5.3:+34277877	None:intergenic

Showing 1 to 10 of 147 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACATACCGGTATCATATTT+CGG	+	chr5.3:34276856-34276875	None:intergenic	30.0%
AACTTTCATGCTCATATTGA+AGG	+	chr5.3:34276932-34276951	None:intergenic	30.0%
AAGAAAAAGGGTAGAAATGA+AGG	+	chr5.3:34276474-34276493	None:intergenic	30.0%
AATGAAGCCTAATTAGATAC+AGG	+	chr5.3:34277092-34277111	None:intergenic	30.0%
ACAATGTTTCCTTCCAAATT+TGG	+	chr5.3:34278404-34278423	None:intergenic	30.0%
ACATCAGAATCATTTGATGA+TGG	+	chr5.3:34276664-34276683	None:intergenic	30.0%
ACTTTCATGCTCATATTGAA+GGG	+	chr5.3:34276931-34276950	None:intergenic	30.0%
ATTCTACCGAAATATGATAC+CGG	-	chr5.3:34276847-34276866	MS.gene054771:CDS	30.0%
CAAAGACTTGAAATTTGCAT+CGG	-	chr5.3:34277996-34278015	MS.gene054771:CDS	30.0%
CAGTTTGATCCAATTGATAT+AGG	-	chr5.3:34277192-34277211	MS.gene054771:CDS	30.0%

Showing 1 to 10 of 179 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	34276115	34278637	34276115	ID=MS.gene054771
chr5.3	mRNA	34276115	34278637	34276115	ID=MS.gene054771.t1;Parent=MS.gene054771
chr5.3	exon	34276115	34278637	34276115	ID=MS.gene054771.t1.exon1;Parent=MS.gene054771.t1
chr5.3	CDS	34276115	34278637	34276115	ID=cds.MS.gene054771.t1;Parent=MS.gene054771.t1

Gene Sequence

>MS.gene054771

ATGTTGGAGAAATTCATGAATGCTATCACATGTTTTGTTATGTACATATTTTTCTCAAACATTTTACACATAGAAGTTAATGCTGACAATACTAGCTATGTCCCCTCAGAAAACACACTTATCAATTGTGGCTCTAACACATCTGAACTTGTTCAATATGATGGTAGAATCTGGAATGGTGACATTGATTCACCATATGTACCATCCTATGAAGACATCATCAACAAGTCCTTAACAGCAAAAGCACCTTCTTCAAATCTTCAATCCATTCCTGAAGTTCCTTATATGACAGCTAGAATCTTTCAATCTCAATTTACATATAGATTTAATGTAACTTCAGGTCCGAAATTCATACGCCTTCATTTCTACCCTTTTTCTTATTTGGACTTCAACATGTCAAAAGCTTTCTTATCTGTCACTGCTGGTAACTTCACTCTTCTGCATAACTTTAGTGTTTCTCTAAATGCAGATTACTTTAACTCAGCATATTTAATGAAAGAATTCATTGTGCATGTAGAAGAGAACACTCTAGAACTTACTTTCACTCCATCATCAAATGATTCTGATGTTTATGCATTTGTGAATGGTATTGAAGTTGTTTCAATACCAAATGGTTTATACATTGGTGGTGATGATTCCCCTATTCCTTTAGTTGGCCAGGATAAACCAGTTTACATTTATAATGATTCAGCTATGGAAAATTTGTATAGATTGAATGTAGGAGGGGAACAAATTCTACCGAAATATGATACCGGTATGTTTCGCAATTGGGATATCGATGATGGTTACATCTTTGGGGAAGGATATATGAAACCCTTCAATATGAGCATGAAAGTTTTGTATACGGATCATGTTCCAGAATATACTGCTCCTGATGATGTCTACCGCACGTCGTGTTCCATGATACCGATTGAGCATGGACTTGTAAATTTAAATTACAATCTAACATGGTTTTTTGAAGTTGATTCTGGCTTCCTGTATCTAATTAGGCTTCATTTCTGCGAAATTTCTTATGAAATAACTAGGGTGAATGAGGTGGTTTTTTCAGTTTTTTTGAATAATCAGACAGCTGAAGAACAGTTTGATCCAATTGATATAGGTGGGGGACCTGGAGTTGCTATTTACAGAGACTATGTTGTGTTGGTTCCTAAAGATAGTGGTGCAAAGCAAGATCTTTGGTTAGATCTTCACCCTTACAAGTATTCAAAACCTCAGTTTTACAATTCTTACTTGAATGGTGTTGAGATCTTTAAACTTAGCAGTGTTGATAAGAAGAATCTTGCCGGCCTTAACCCTTCCGAAAAGAAGATTGGATCATCTGCAACAGCTACACCCCATGTTGTTGAAAAGGTTAAAAGCTCAAAGAAACTAAAATTCATCCTCATTGGATGTGGACTAGGTGTCGTGGCAGTACCGATTCTTTTGTGCTTAGTTTTATTGAAGTTTAAGGTGATTAAGCCTAGAAAGATCATGTCATGTTGTGTCCTTTCCCCTAATCAAACTGAAATGGCGAAAAAGTCATCATCATTTTGCTGTCAATTTTCATTGAAAGAGATAAAAGTAGCAACAAATGACTTCAATGAGGCTTTGCTTATAGGAACAGGTGGATTTGGGAGTGTTTACAAAGGTAGCTTTGATGATGGGGCATCTTTTGTAGCTATAAAACGCGCCGATCTAATGTCTGAACAAGGTGTTGTAGAATTCGAGACTGAGATTCATTTGCTCTCGCGTGTACGCCATAACAACCTCGTCTCACTTTTGGGCTACTGCAATGAAGATGATGAGATGATACTTGTTTATGACTTCATGTCCAATGGAAATCTTTATGACCAACTTCATTTGAAGCAAAAAGATCAACACCAGCCTCATTTGTCATGGATTCAAAGACTTGAAATTTGCATCGGAGTTGCAAGAGGTTTGCATTATTTACACACCGGCACAAAGCCTACAATCATTCACCGCGATATCAAGACAACAAACATACTCTTAGATCATAATTGGATTGCTAAAATTTCAGATTTTGGTTTGTCAAAGGAAAGTTACACTTCCTTAGGCACAACTGTCGTCAAAGGCAGCACCGGTTACCTTGATCCGGAATACTATCAACGACACGTGTTTACTGAGAAATCTGATTTATACTCACTTGGTGTGGTTTTGTTGGAAGTGCTAAGTGCAAGGCAAGCTTTAAGTCCATGTGATGATGCTGATGATGATGATGAGCATTTGAGCTTGGCTGAATGGGCTAAGTTTTGCTTTGAGAATGGAAATTTTGAAGAAATAGTGGATCCAAATTTGGAAGGAAACATTGTTAAGGAGTGCCTTGAGTTATATTTAGGCGTTGCTATGAAATGTTTGGCTGAAAGAGGAGTGGAGAGGCCATCCACTGGTGATGTTCTACAGAATCTTTTTATGGCATTCCAGATTCAGAAAAATGGTGGTAATGTACATGATGATTTACAGGTCTATTCAGACTTGACACCTGGCATAGAGTTCTCTGATATTATGATGCCTGTTGGCAGGTGA

Protein sequence

>MS.gene054771.t1

MLEKFMNAITCFVMYIFFSNILHIEVNADNTSYVPSENTLINCGSNTSELVQYDGRIWNGDIDSPYVPSYEDIINKSLTAKAPSSNLQSIPEVPYMTARIFQSQFTYRFNVTSGPKFIRLHFYPFSYLDFNMSKAFLSVTAGNFTLLHNFSVSLNADYFNSAYLMKEFIVHVEENTLELTFTPSSNDSDVYAFVNGIEVVSIPNGLYIGGDDSPIPLVGQDKPVYIYNDSAMENLYRLNVGGEQILPKYDTGMFRNWDIDDGYIFGEGYMKPFNMSMKVLYTDHVPEYTAPDDVYRTSCSMIPIEHGLVNLNYNLTWFFEVDSGFLYLIRLHFCEISYEITRVNEVVFSVFLNNQTAEEQFDPIDIGGGPGVAIYRDYVVLVPKDSGAKQDLWLDLHPYKYSKPQFYNSYLNGVEIFKLSSVDKKNLAGLNPSEKKIGSSATATPHVVEKVKSSKKLKFILIGCGLGVVAVPILLCLVLLKFKVIKPRKIMSCCVLSPNQTEMAKKSSSFCCQFSLKEIKVATNDFNEALLIGTGGFGSVYKGSFDDGASFVAIKRADLMSEQGVVEFETEIHLLSRVRHNNLVSLLGYCNEDDEMILVYDFMSNGNLYDQLHLKQKDQHQPHLSWIQRLEICIGVARGLHYLHTGTKPTIIHRDIKTTNILLDHNWIAKISDFGLSKESYTSLGTTVVKGSTGYLDPEYYQRHVFTEKSDLYSLGVVLLEVLSARQALSPCDDADDDDEHLSLAEWAKFCFENGNFEEIVDPNLEGNIVKECLELYLGVAMKCLAERGVERPSTGDVLQNLFMAFQIQKNGGNVHDDLQVYSDLTPGIEFSDIMMPVGR