AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054891

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054891.t1 MTR_7g095680 97.351 302 6 1 1 300 1 302 0.0 603
MS.gene054891.t1 MTR_1g102860 65.532 235 77 2 26 259 17 248 3.05e-105 310
MS.gene054891.t1 MTR_1g071360 57.237 304 93 4 1 296 1 275 7.70e-101 300
MS.gene054891.t1 MTR_1g071360 56.811 301 93 4 4 296 1 272 8.92e-98 293
MS.gene054891.t1 MTR_3g104550 66.995 203 66 1 34 236 31 232 5.67e-96 288
MS.gene054891.t1 MTR_5g029680 59.009 222 85 1 35 250 18 239 1.18e-88 274
MS.gene054891.t1 MTR_4g077970 57.692 208 82 2 48 250 11 217 6.21e-78 246
MS.gene054891.t1 MTR_1g061170 51.271 236 110 4 35 270 35 265 1.08e-71 229
MS.gene054891.t1 MTR_8g105780 48.241 199 89 3 49 237 22 216 2.67e-54 181
MS.gene054891.t1 MTR_6g086805 42.927 205 108 3 49 253 11 206 1.71e-53 178
MS.gene054891.t1 MTR_8g087540 41.784 213 116 2 48 260 11 215 8.07e-53 178
MS.gene054891.t1 MTR_6g043060 44.878 205 99 5 49 250 22 215 1.73e-50 170
MS.gene054891.t1 MTR_2g100680 39.224 232 130 5 46 273 28 252 2.53e-50 173
MS.gene054891.t1 MTR_8g083100 46.569 204 99 6 50 252 23 217 2.05e-49 171
MS.gene054891.t1 MTR_2g100670 43.386 189 102 2 43 231 27 210 6.08e-47 160
MS.gene054891.t1 MTR_2g017890 36.800 250 131 5 48 284 14 249 6.22e-47 162
MS.gene054891.t1 MTR_2g100670 43.386 189 102 2 43 231 135 318 7.56e-46 160
MS.gene054891.t1 MTR_5g017470 65.686 102 35 0 46 147 6 107 4.87e-45 155
MS.gene054891.t1 MTR_3g101870 68.932 103 31 1 43 145 18 119 9.07e-45 156
MS.gene054891.t1 MTR_5g010680 65.957 94 32 0 47 140 22 115 8.96e-43 151
MS.gene054891.t1 MTR_1g100777 61.702 94 36 0 47 140 16 109 1.01e-40 144
MS.gene054891.t1 MTR_5g089170 65.957 94 32 0 47 140 23 116 1.03e-40 142
MS.gene054891.t1 MTR_7g091370 40.984 183 96 3 40 210 9 191 6.79e-40 140
MS.gene054891.t1 MTR_0020s0020 60.638 94 37 0 47 140 31 124 1.07e-39 142
MS.gene054891.t1 MTR_4g088900 38.462 182 97 5 47 224 31 201 2.96e-33 122
MS.gene054891.t1 MTR_1g061170 43.636 165 88 4 106 270 11 170 1.29e-30 119
MS.gene054891.t1 MTR_4g045757 57.143 70 29 1 40 108 5 74 1.69e-21 87.0
MS.gene054891.t1 MTR_5g047190 44.828 87 41 2 57 136 1 87 4.56e-18 78.2
MS.gene054891.t1 MTR_2g043940 30.058 173 97 5 85 252 7 160 7.41e-15 74.7
MS.gene054891.t1 MTR_6g044340 29.333 150 98 4 101 250 14 155 2.90e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054891.t1 AT3G22830 57.980 307 98 5 24 300 36 341 3.97e-118 346
MS.gene054891.t1 AT2G26150 61.574 216 81 2 36 250 31 245 1.06e-92 279
MS.gene054891.t1 AT2G26150 61.574 216 81 2 36 250 31 245 1.06e-92 279
MS.gene054891.t1 AT3G51910 56.154 260 79 5 39 297 19 244 2.66e-92 275
MS.gene054891.t1 AT1G32330 55.466 247 95 4 18 250 4 249 4.72e-84 261
MS.gene054891.t1 AT1G32330 55.466 247 95 4 18 250 4 249 5.70e-84 261
MS.gene054891.t1 AT4G17750 52.245 245 96 3 26 250 23 266 5.91e-83 259
MS.gene054891.t1 AT5G16820 52.308 260 108 5 27 276 10 263 5.95e-82 256
MS.gene054891.t1 AT5G16820 52.308 260 108 5 27 276 10 263 5.95e-82 256
MS.gene054891.t1 AT3G63350 48.571 280 118 4 26 302 5 261 8.92e-82 249
MS.gene054891.t1 AT3G02990 54.348 230 98 3 48 270 22 251 5.38e-80 251
MS.gene054891.t1 AT5G43840 47.143 280 108 8 35 300 5 258 7.78e-76 234
MS.gene054891.t1 AT5G03720 47.244 254 118 5 35 282 41 284 8.28e-68 218
MS.gene054891.t1 AT5G03720 47.244 254 118 5 35 282 41 284 8.28e-68 218
MS.gene054891.t1 AT1G67970 50.265 189 92 2 49 236 19 206 3.15e-60 197
MS.gene054891.t1 AT5G54070 41.837 196 103 2 42 236 63 248 5.88e-54 179
MS.gene054891.t1 AT3G24520 42.857 203 92 2 49 251 17 195 1.28e-50 171
MS.gene054891.t1 AT4G13980 42.857 210 99 4 50 252 24 219 2.88e-50 173
MS.gene054891.t1 AT2G26150 55.245 143 62 2 109 250 49 190 1.02e-45 157
MS.gene054891.t1 AT2G26150 55.245 143 62 2 109 250 49 190 1.02e-45 157
MS.gene054891.t1 AT4G18880 42.932 191 109 0 41 231 7 197 4.98e-45 158
MS.gene054891.t1 AT1G46264 61.864 118 44 1 39 156 24 140 1.18e-43 153
MS.gene054891.t1 AT5G45710 41.667 180 104 1 48 227 12 190 3.43e-43 152
MS.gene054891.t1 AT5G45710 41.667 180 104 1 48 227 12 190 3.43e-43 152
MS.gene054891.t1 AT4G11660 63.636 99 35 1 47 145 57 154 6.47e-41 146
MS.gene054891.t1 AT5G62020 50.769 130 60 1 47 172 21 150 1.11e-40 144
MS.gene054891.t1 AT4G36990 56.522 115 43 1 47 161 12 119 4.61e-40 142
MS.gene054891.t1 AT2G41690 62.766 94 35 0 47 140 38 131 1.52e-39 139
MS.gene054891.t1 AT4G18870 35.484 124 80 0 38 161 135 258 2.00e-24 100
MS.gene054891.t1 AT4G18870 48.315 89 41 2 50 136 14 99 6.71e-22 94.0

Find 74 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGGTGAAAGAAGAGTATT+TGG 0.239647 7.3:-15396415 MS.gene054891:CDS
TTTGCAAACTCCCATTTATC+AGG 0.290173 7.3:+15395311 None:intergenic
TGGTGCTAGCTTTGTTGTTT+GGG 0.299201 7.3:-15396214 MS.gene054891:CDS
TGTGTCGAAGTTGGTCGTTT+TGG 0.328024 7.3:-15395185 MS.gene054891:CDS
GTGGTGCTAGCTTTGTTGTT+TGG 0.347357 7.3:-15396215 MS.gene054891:CDS
CATTTGTTGCTGCTTAATTT+CGG 0.365368 7.3:+15395034 None:intergenic
AGGAGAAGGCCAATTGAGTA+TGG 0.367381 7.3:-15394909 MS.gene054891:CDS
CTTGATTCTCCATACTCAAT+TGG 0.372150 7.3:+15394900 None:intergenic
CAACAAGTCACATAGTTTCA+TGG 0.398902 7.3:-15396245 MS.gene054891:CDS
CACAAAGACATTTGATGTTG+TGG 0.406218 7.3:-15396277 MS.gene054891:CDS
TCCAAATACTCTTCTTTCAC+CGG 0.421749 7.3:+15396414 None:intergenic
GGAAGGAGCGGTGTTAGATA+TGG 0.430842 7.3:-15394864 MS.gene054891:CDS
AAATGGGAGTTTGCAAATGA+AGG 0.436132 7.3:-15395305 MS.gene054891:CDS
GCTATGGAAATGCAGGGTCT+TGG 0.439082 7.3:-15394813 MS.gene054891:CDS
TCAAATGTCTTTGTGAGAAA+TGG 0.443148 7.3:+15396285 None:intergenic
AGGTCTCTGGAGAAAGCATT+TGG 0.449261 7.3:+15396189 None:intergenic
TTGTTGTGTTTGAAGTATCT+AGG 0.454609 7.3:+15396162 None:intergenic
GTATCTAGGAAGAAGGTCTC+TGG 0.470929 7.3:+15396176 None:intergenic
AGTAATTGCTGAATAAAAGC+TGG 0.482397 7.3:+15394981 None:intergenic
AGAACATGAGGAAGAGATTG+AGG 0.486359 7.3:-15394778 MS.gene054891:intron
GTTATTCCACGGCCAATGGA+GGG 0.502097 7.3:-15396330 MS.gene054891:CDS
CAGGGTCTTGGAAGAGGTGG+TGG 0.504100 7.3:-15394801 MS.gene054891:CDS
GGTTGTTATTCCACGGCCAA+TGG 0.506460 7.3:-15396334 MS.gene054891:CDS
TGGATTTGAAGTGTCAGAGT+TGG 0.506828 7.3:-15394844 MS.gene054891:CDS
GATTGTTGTTGTGAAGTACT+AGG 0.510219 7.3:+15395221 None:intergenic
AATTAAGCAGCAACAAATGA+TGG 0.512562 7.3:-15395030 MS.gene054891:CDS
GCAAATGAAGGATTTCTAAG+AGG 0.518927 7.3:-15395293 MS.gene054891:CDS
TGTTATTCCACGGCCAATGG+AGG 0.521139 7.3:-15396331 MS.gene054891:CDS
ACTTCATGAAGCCCCTCCAT+TGG 0.523280 7.3:+15396318 None:intergenic
GAATCAAGCAATGGTGGCGA+TGG 0.523881 7.3:-15394885 MS.gene054891:CDS
GTTTGAAGTATCTAGGAAGA+AGG 0.525332 7.3:+15396169 None:intergenic
TGAAGCCCCTCCATTGGCCG+TGG 0.526845 7.3:+15396324 None:intergenic
CAAGGTCATTGTGTCGAAGT+TGG 0.527505 7.3:-15395194 MS.gene054891:CDS
TCAGCAATTACTTCAACAGA+AGG 0.528664 7.3:-15394970 MS.gene054891:CDS
GTTGATTGGACAAGAACCTC+TGG 0.533008 7.3:-15394241 MS.gene054891:CDS
TGAAACTATGTGACTTGTTG+TGG 0.534841 7.3:+15396248 None:intergenic
TCAACAGAAGGAAAATAGAA+AGG 0.539132 7.3:-15394958 MS.gene054891:CDS
AAGATCAATTCTTCAAGCAA+TGG 0.539185 7.3:-15395075 MS.gene054891:CDS
CAAGCAATGGTGGCGATGGA+AGG 0.542951 7.3:-15394881 MS.gene054891:CDS
AAGATGATATTACTAAGAAG+AGG 0.544726 7.3:-15394929 MS.gene054891:CDS
TTCTTCAAGCAATGGAGGAA+AGG 0.545810 7.3:-15395067 MS.gene054891:CDS
AATGTTGGCTATGGAAATGC+AGG 0.546217 7.3:-15394820 MS.gene054891:CDS
GAAATGCAGGGTCTTGGAAG+AGG 0.548123 7.3:-15394807 MS.gene054891:CDS
TGACAAACAAGTGTTAATGA+TGG 0.548560 7.3:-15395132 MS.gene054891:CDS
TTATTCCACGGCCAATGGAG+GGG 0.553219 7.3:-15396329 MS.gene054891:CDS
GAAACTATGTGACTTGTTGT+GGG 0.554070 7.3:+15396249 None:intergenic
AAGAGGTGGTGGAGAACATG+AGG 0.558488 7.3:-15394790 MS.gene054891:CDS
AGAGTTGGAAATGTTGGCTA+TGG 0.563297 7.3:-15394829 MS.gene054891:CDS
GATCAACGGTTGTTATTCCA+CGG 0.563873 7.3:-15396341 MS.gene054891:CDS
ATGGAGGGGCTTCATGAAGT+AGG 0.569714 7.3:-15396315 MS.gene054891:CDS
ATCAATTCTTCAAGCAATGG+AGG 0.570369 7.3:-15395072 MS.gene054891:CDS
CCAAATACTCTTCTTTCACC+GGG 0.572214 7.3:+15396415 None:intergenic
AGTGTCAGAGTTGGAAATGT+TGG 0.574012 7.3:-15394835 MS.gene054891:CDS
TCATCATCGACATATGAAAG+AGG 0.574909 7.3:-15396375 MS.gene054891:CDS
ATATTACTAAGAAGAGGAGA+AGG 0.582566 7.3:-15394923 MS.gene054891:CDS
TATGAAAGAGGAAGTGATGA+GGG 0.592553 7.3:-15396363 MS.gene054891:CDS
ATAGTTTCATGGAGCAGAGG+TGG 0.609892 7.3:-15396234 MS.gene054891:CDS
AGGAAGTGATGAGGGATCAA+CGG 0.610055 7.3:-15396355 MS.gene054891:CDS
CACATAGTTTCATGGAGCAG+AGG 0.610814 7.3:-15396237 MS.gene054891:CDS
ATGCAGGGTCTTGGAAGAGG+TGG 0.614702 7.3:-15394804 MS.gene054891:CDS
AAAGACATTTGATGTTGTGG+AGG 0.626606 7.3:-15396274 MS.gene054891:CDS
ATATGAAAGAGGAAGTGATG+AGG 0.628523 7.3:-15396364 MS.gene054891:CDS
AATGTCTTTGTGAGAAATGG+TGG 0.633018 7.3:+15396288 None:intergenic
AATGGTGGCGATGGAAGGAG+CGG 0.633530 7.3:-15394876 MS.gene054891:CDS
TATGGAGAATCAAGCAATGG+TGG 0.643357 7.3:-15394891 MS.gene054891:CDS
GAGTATGGAGAATCAAGCAA+TGG 0.643875 7.3:-15394894 MS.gene054891:CDS
TTCATATGTCGATGATGACG+AGG 0.651722 7.3:+15396380 None:intergenic
GTCTTTGTGAGAAATGGTGG+TGG 0.661352 7.3:+15396291 None:intergenic
TAAAATGAACTATCTCTACC+CGG 0.661608 7.3:-15396433 None:intergenic
TCATCTCTATCAACTACCAG+AGG 0.673100 7.3:+15394225 None:intergenic
TCACAACAACAATCATCACA+AGG 0.699849 7.3:-15395212 MS.gene054891:CDS
GCAATGGAGGAAAGGCTACG+TGG 0.702933 7.3:-15395059 MS.gene054891:CDS
AAACTATGTGACTTGTTGTG+GGG 0.712916 7.3:+15396250 None:intergenic
ATGTTGGCTATGGAAATGCA+GGG 0.727372 7.3:-15394819 MS.gene054891:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAACTTAATTCATA+TGG + chr7.3:15395277-15395296 None:intergenic 10.0%
!! AAAATTAAATCTAAGAAGAT+TGG - chr7.3:15394662-15394681 MS.gene054891:intron 15.0%
!! ATACAGATAACATATATAAA+AGG + chr7.3:15394854-15394873 None:intergenic 15.0%
!! TAGAAACACAAAAATTTAAA+TGG + chr7.3:15396225-15396244 None:intergenic 15.0%
!!! ATTTTACATTACTTGTATAT+TGG - chr7.3:15394748-15394767 MS.gene054891:intron 15.0%
!!! TTAAGATCAAAATTTTCTTT+TGG + chr7.3:15394616-15394635 None:intergenic 15.0%
!!! TTTTATGGAGTTTAAAAAAA+AGG + chr7.3:15395033-15395052 None:intergenic 15.0%
!! AAAAATTGATCCTGATAAAT+GGG - chr7.3:15395342-15395361 MS.gene054891:intron 20.0%
!! CCATAAAATATAGTATTATC+TGG - chr7.3:15395045-15395064 MS.gene054891:CDS 20.0%
!! TAATGTATAAAACGTTTGTA+CGG - chr7.3:15394928-15394947 MS.gene054891:CDS 20.0%
!!! CCAGATAATACTATATTTTA+TGG + chr7.3:15395048-15395067 None:intergenic 20.0%
!!! TTTATTTTAAATGTCGATGT+GGG - chr7.3:15395291-15395310 MS.gene054891:CDS 20.0%
!!! TTTCTTTTGGTTACTTAATT+GGG + chr7.3:15394603-15394622 None:intergenic 20.0%
!!! TTTTATTTTAAATGTCGATG+TGG - chr7.3:15395290-15395309 MS.gene054891:CDS 20.0%
!!! TTTTCTTTTGGTTACTTAAT+TGG + chr7.3:15394604-15394623 None:intergenic 20.0%
! AAGATGATATTACTAAGAAG+AGG - chr7.3:15395734-15395753 MS.gene054891:intron 25.0%
! CATCTAAATTCAACATCAAA+TGG + chr7.3:15395156-15395175 None:intergenic 25.0%
! GAAAAATTGATCCTGATAAA+TGG - chr7.3:15395341-15395360 MS.gene054891:intron 25.0%
! TACTATTATACCATTACCTA+TGG - chr7.3:15395220-15395239 MS.gene054891:CDS 25.0%
! TGAATAAAGAACTTGATGAA+GGG - chr7.3:15395929-15395948 MS.gene054891:intron 25.0%
! TGTATGTTTGGTATACAAAT+GGG - chr7.3:15396284-15396303 MS.gene054891:CDS 25.0%
! TTGAATAAAGAACTTGATGA+AGG - chr7.3:15395928-15395947 MS.gene054891:intron 25.0%
!! ATGTTTCTCTCTTATTGATT+AGG - chr7.3:15396385-15396404 MS.gene054891:CDS 25.0%
!! TTTTAGCAAACATTAAGAGA+AGG - chr7.3:15395404-15395423 MS.gene054891:intron 25.0%
!!! AATATTATTTAGCTTTGCCT+AGG + chr7.3:15394813-15394832 None:intergenic 25.0%
!!! ATATTATTTAGCTTTGCCTA+GGG + chr7.3:15394812-15394831 None:intergenic 25.0%
!!! GACTCAATTTTTTGTATACA+GGG - chr7.3:15395313-15395332 MS.gene054891:CDS 25.0%
AAGATCAATTCTTCAAGCAA+TGG - chr7.3:15395588-15395607 MS.gene054891:intron 30.0%
AATTAAGCAGCAACAAATGA+TGG - chr7.3:15395633-15395652 MS.gene054891:intron 30.0%
AGTAATTGCTGAATAAAAGC+TGG + chr7.3:15395685-15395704 None:intergenic 30.0%
ATATTACTAAGAAGAGGAGA+AGG - chr7.3:15395740-15395759 MS.gene054891:intron 30.0%
GATGAGAAGAATACTTACAT+AGG + chr7.3:15394556-15394575 None:intergenic 30.0%
GTGTATGTTTGGTATACAAA+TGG - chr7.3:15396283-15396302 MS.gene054891:CDS 30.0%
TCAAATGTCTTTGTGAGAAA+TGG + chr7.3:15394381-15394400 None:intergenic 30.0%
TCAACAGAAGGAAAATAGAA+AGG - chr7.3:15395705-15395724 MS.gene054891:intron 30.0%
TGACAAACAAGTGTTAATGA+TGG - chr7.3:15395531-15395550 MS.gene054891:intron 30.0%
TTGTGCTAAAAAAAATCCCT+AGG - chr7.3:15394793-15394812 MS.gene054891:CDS 30.0%
! ATATGTCCTTTTGTAGTAAC+AGG - chr7.3:15396256-15396275 MS.gene054891:CDS 30.0%
! CATTTGTTGCTGCTTAATTT+CGG + chr7.3:15395632-15395651 None:intergenic 30.0%
! CTTATTGTTTCCTGGATTTT+TGG - chr7.3:15395104-15395123 MS.gene054891:CDS 30.0%
! TTCTCTCTTATTGATTAGGT+AGG - chr7.3:15396389-15396408 MS.gene054891:CDS 30.0%
! TTGTTGTGTTTGAAGTATCT+AGG + chr7.3:15394504-15394523 None:intergenic 30.0%
!!! GGACTCAATTTTTTGTATAC+AGG - chr7.3:15395312-15395331 MS.gene054891:CDS 30.0%
AAAGACATTTGATGTTGTGG+AGG - chr7.3:15394389-15394408 MS.gene054891:intron 35.0%
AAATGGGAGTTTGCAAATGA+AGG - chr7.3:15395358-15395377 MS.gene054891:intron 35.0%
AATCCAGAAACCAAAAATCC+AGG + chr7.3:15395117-15395136 None:intergenic 35.0%
AATGTCTTTGTGAGAAATGG+TGG + chr7.3:15394378-15394397 None:intergenic 35.0%
AATTCAACATCAAATGGAGC+AGG + chr7.3:15395150-15395169 None:intergenic 35.0%
ACTACCAAGCAAAAAATCTG+TGG - chr7.3:15396196-15396215 MS.gene054891:CDS 35.0%
ACTTGACCTGTTACTACAAA+AGG + chr7.3:15396265-15396284 None:intergenic 35.0%
ATATGAAAGAGGAAGTGATG+AGG - chr7.3:15394299-15394318 MS.gene054891:intron 35.0%
ATCAATTCTTCAAGCAATGG+AGG - chr7.3:15395591-15395610 MS.gene054891:intron 35.0%
ATTGCTTCAACCATAGGTAA+TGG + chr7.3:15395233-15395252 None:intergenic 35.0%
CAACAAGTCACATAGTTTCA+TGG - chr7.3:15394418-15394437 MS.gene054891:intron 35.0%
CACAAAGACATTTGATGTTG+TGG - chr7.3:15394386-15394405 MS.gene054891:intron 35.0%
CGATTGAGCGTAATTCATTT+CGG + chr7.3:15396075-15396094 None:intergenic 35.0%
CTTGATTCTCCATACTCAAT+TGG + chr7.3:15395766-15395785 None:intergenic 35.0%
GATTAACCTTCTTCGTATGA+TGG - chr7.3:15396096-15396115 MS.gene054891:intron 35.0%
GCAAATGAAGGATTTCTAAG+AGG - chr7.3:15395370-15395389 MS.gene054891:intron 35.0%
TAACAGGTCAAGTGTATGTT+TGG - chr7.3:15396272-15396291 MS.gene054891:CDS 35.0%
TATGAAAGAGGAAGTGATGA+GGG - chr7.3:15394300-15394319 MS.gene054891:intron 35.0%
TCACAACAACAATCATCACA+AGG - chr7.3:15395451-15395470 MS.gene054891:intron 35.0%
TCAGCAATTACTTCAACAGA+AGG - chr7.3:15395693-15395712 MS.gene054891:intron 35.0%
TCATCATCGACATATGAAAG+AGG - chr7.3:15394288-15394307 MS.gene054891:intron 35.0%
TCCAAATACTCTTCTTTCAC+CGG + chr7.3:15394252-15394271 None:intergenic 35.0%
TGTTCAATTGCTTCAACCAT+AGG + chr7.3:15395239-15395258 None:intergenic 35.0%
TGTTTGGTATACAAATGGGT+TGG - chr7.3:15396288-15396307 MS.gene054891:CDS 35.0%
TTTGCAAACTCCCATTTATC+AGG + chr7.3:15395355-15395374 None:intergenic 35.0%
! AAGAACTTGATGAAGGGTTT+TGG - chr7.3:15395935-15395954 MS.gene054891:intron 35.0%
! AGAACTTGATGAAGGGTTTT+GGG - chr7.3:15395936-15395955 MS.gene054891:intron 35.0%
! GATTGTTGTTGTGAAGTACT+AGG + chr7.3:15395445-15395464 None:intergenic 35.0%
! GTTTGAAGTATCTAGGAAGA+AGG + chr7.3:15394497-15394516 None:intergenic 35.0%
!! AAACTATGTGACTTGTTGTG+GGG + chr7.3:15394416-15394435 None:intergenic 35.0%
!! ATGATGGACTGATTAGGATT+CGG - chr7.3:15396112-15396131 MS.gene054891:intron 35.0%
!! GAAACTATGTGACTTGTTGT+GGG + chr7.3:15394417-15394436 None:intergenic 35.0%
!! TGAAACTATGTGACTTGTTG+TGG + chr7.3:15394418-15394437 None:intergenic 35.0%
!!! GCAACAAATGATGGCTTTTT+TGG - chr7.3:15395642-15395661 MS.gene054891:intron 35.0%
!!! GTTTCCACAGATTTTTTGCT+TGG + chr7.3:15396203-15396222 None:intergenic 35.0%
!!! TTTCCTGGATTTTTGGTTTC+TGG - chr7.3:15395111-15395130 MS.gene054891:CDS 35.0%
AATGTGTTGTCCAATCGCTT+TGG - chr7.3:15396033-15396052 MS.gene054891:intron 40.0%
ACCTAAGTAACCAAAGCGAT+TGG + chr7.3:15396046-15396065 None:intergenic 40.0%
AGAACATGAGGAAGAGATTG+AGG - chr7.3:15395885-15395904 MS.gene054891:intron 40.0%
AGTGTCAGAGTTGGAAATGT+TGG - chr7.3:15395828-15395847 MS.gene054891:intron 40.0%
ATCAGTCCATCATACGAAGA+AGG + chr7.3:15396105-15396124 None:intergenic 40.0%
CCAAATACTCTTCTTTCACC+GGG + chr7.3:15394251-15394270 None:intergenic 40.0%
GAGTATGGAGAATCAAGCAA+TGG - chr7.3:15395769-15395788 MS.gene054891:intron 40.0%
GATTCGGACTCAAAATCGAT+CGG - chr7.3:15396128-15396147 MS.gene054891:CDS 40.0%
TATGGAGAATCAAGCAATGG+TGG - chr7.3:15395772-15395791 MS.gene054891:intron 40.0%
TCCAATCGCTTTGGTTACTT+AGG - chr7.3:15396042-15396061 MS.gene054891:intron 40.0%
TTCTTCAAGCAATGGAGGAA+AGG - chr7.3:15395596-15395615 MS.gene054891:intron 40.0%
TTGAAATTTGAGCGCATGTC+AGG + chr7.3:15396359-15396378 None:intergenic 40.0%
! AATGTTGGCTATGGAAATGC+AGG - chr7.3:15395843-15395862 MS.gene054891:intron 40.0%
! AGAGTTGGAAATGTTGGCTA+TGG - chr7.3:15395834-15395853 MS.gene054891:intron 40.0%
! ATGTTGGCTATGGAAATGCA+GGG - chr7.3:15395844-15395863 MS.gene054891:intron 40.0%
! CGTCTTGTCTTATTGTTTCC+TGG - chr7.3:15395096-15395115 MS.gene054891:CDS 40.0%
! GATCAACGGTTGTTATTCCA+CGG - chr7.3:15394322-15394341 MS.gene054891:intron 40.0%
! TAGGTTTTGCAGCTGTTGAT+TGG - chr7.3:15396408-15396427 MS.gene054891:CDS 40.0%
! TGGATTTGAAGTGTCAGAGT+TGG - chr7.3:15395819-15395838 MS.gene054891:intron 40.0%
! TTCATATGTCGATGATGACG+AGG + chr7.3:15394286-15394305 None:intergenic 40.0%
!! CTTCGTATGATGGACTGATT+AGG - chr7.3:15396106-15396125 MS.gene054891:intron 40.0%
!! TGGTGCTAGCTTTGTTGTTT+GGG - chr7.3:15394449-15394468 MS.gene054891:intron 40.0%
AGGAAGTGATGAGGGATCAA+CGG - chr7.3:15394308-15394327 MS.gene054891:intron 45.0%
AGGAGAAGGCCAATTGAGTA+TGG - chr7.3:15395754-15395773 MS.gene054891:intron 45.0%
ATAGTTTCATGGAGCAGAGG+TGG - chr7.3:15394429-15394448 MS.gene054891:intron 45.0%
CAACATCAAATGGAGCAGGT+AGG + chr7.3:15395146-15395165 None:intergenic 45.0%
CAAGGTCATTGTGTCGAAGT+TGG - chr7.3:15395469-15395488 MS.gene054891:intron 45.0%
CACATAGTTTCATGGAGCAG+AGG - chr7.3:15394426-15394445 MS.gene054891:intron 45.0%
GTATCTAGGAAGAAGGTCTC+TGG + chr7.3:15394490-15394509 None:intergenic 45.0%
GTCTTTGTGAGAAATGGTGG+TGG + chr7.3:15394375-15394394 None:intergenic 45.0%
GTTGATTGGACAAGAACCTC+TGG - chr7.3:15396422-15396441 MS.gene054891:CDS 45.0%
! ACTAGTAGTGTGGTCTTGGT+TGG - chr7.3:15396153-15396172 MS.gene054891:CDS 45.0%
!! AGGTCTCTGGAGAAAGCATT+TGG + chr7.3:15394477-15394496 None:intergenic 45.0%
!! CCCGGTGAAAGAAGAGTATT+TGG - chr7.3:15394248-15394267 MS.gene054891:CDS 45.0%
!! GTGGTGCTAGCTTTGTTGTT+TGG - chr7.3:15394448-15394467 MS.gene054891:intron 45.0%
!! TGTGTCGAAGTTGGTCGTTT+TGG - chr7.3:15395478-15395497 MS.gene054891:intron 45.0%
ACTTCATGAAGCCCCTCCAT+TGG + chr7.3:15394348-15394367 None:intergenic 50.0%
ATGGAGGGGCTTCATGAAGT+AGG - chr7.3:15394348-15394367 MS.gene054891:intron 50.0%
CATCAAATGGAGCAGGTAGG+AGG + chr7.3:15395143-15395162 None:intergenic 50.0%
GAAATGCAGGGTCTTGGAAG+AGG - chr7.3:15395856-15395875 MS.gene054891:intron 50.0%
GCTATGGAAATGCAGGGTCT+TGG - chr7.3:15395850-15395869 MS.gene054891:intron 50.0%
GGACACTAGTAGTGTGGTCT+TGG - chr7.3:15396149-15396168 MS.gene054891:CDS 50.0%
GTTATTCCACGGCCAATGGA+GGG - chr7.3:15394333-15394352 MS.gene054891:intron 50.0%
TCGATCGGACACTAGTAGTG+TGG - chr7.3:15396143-15396162 MS.gene054891:CDS 50.0%
TGTTATTCCACGGCCAATGG+AGG - chr7.3:15394332-15394351 MS.gene054891:intron 50.0%
TTATTCCACGGCCAATGGAG+GGG - chr7.3:15394334-15394353 MS.gene054891:intron 50.0%
! GAATCAAGCAATGGTGGCGA+TGG - chr7.3:15395778-15395797 MS.gene054891:intron 50.0%
! GGAAGGAGCGGTGTTAGATA+TGG - chr7.3:15395799-15395818 MS.gene054891:intron 50.0%
! GGTTGTTATTCCACGGCCAA+TGG - chr7.3:15394329-15394348 MS.gene054891:intron 50.0%
! GTCAGGTATCGTGGTGAGTT+TGG + chr7.3:15396342-15396361 None:intergenic 50.0%
! TGTGGTCTTGGTTGGCAACT+TGG - chr7.3:15396161-15396180 MS.gene054891:CDS 50.0%
!! AAGAGGTGGTGGAGAACATG+AGG - chr7.3:15395873-15395892 MS.gene054891:intron 50.0%
ATGCAGGGTCTTGGAAGAGG+TGG - chr7.3:15395859-15395878 MS.gene054891:intron 55.0%
GCAATGGAGGAAAGGCTACG+TGG - chr7.3:15395604-15395623 MS.gene054891:intron 55.0%
! AATGGTGGCGATGGAAGGAG+CGG - chr7.3:15395787-15395806 MS.gene054891:intron 55.0%
! CAAGCAATGGTGGCGATGGA+AGG - chr7.3:15395782-15395801 MS.gene054891:intron 55.0%
! TGAGCGCATGTCAGGTATCG+TGG + chr7.3:15396351-15396370 None:intergenic 55.0%
CAGGGTCTTGGAAGAGGTGG+TGG - chr7.3:15395862-15395881 MS.gene054891:intron 60.0%
TGAAGCCCCTCCATTGGCCG+TGG + chr7.3:15394342-15394361 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 15394234 15396451 15394234 ID=MS.gene054891
chr7.3 mRNA 15394234 15396451 15394234 ID=MS.gene054891.t1;Parent=MS.gene054891
chr7.3 exon 15396128 15396451 15396128 ID=MS.gene054891.t1.exon1;Parent=MS.gene054891.t1
chr7.3 CDS 15396128 15396451 15396128 ID=cds.MS.gene054891.t1;Parent=MS.gene054891.t1
chr7.3 exon 15394779 15395351 15394779 ID=MS.gene054891.t1.exon2;Parent=MS.gene054891.t1
chr7.3 CDS 15394779 15395351 15394779 ID=cds.MS.gene054891.t1;Parent=MS.gene054891.t1
chr7.3 exon 15394234 15394278 15394234 ID=MS.gene054891.t1.exon3;Parent=MS.gene054891.t1
chr7.3 CDS 15394234 15394278 15394234 ID=cds.MS.gene054891.t1;Parent=MS.gene054891.t1
Gene Sequence

>MS.gene054891

ATGAACTATCTCTACCCGGTGAAAGAAGAGTATTTGGAAATTGAAGCAACCTCGTCATCATCGACATATGAAAGAGGAAGTGATGAGGGATCAACGGTTGTTATTCCACGGCCAATGGAGGGGCTTCATGAAGTAGGACCACCACCATTTCTCACAAAGACATTTGATGTTGTGGAGGACCCCACAACAAGTCACATAGTTTCATGGAGCAGAGGTGGTGCTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAACTCAACACCTATGTAAGTATTCTTCTCATCTTCATTTGCATAAACAATATTTAACCCAATTAAGTAACCAAAAGAAAATTTTGATCTTAAGCTAAATTAATATTAATATGCACTCAAAAATTAAATCTAAGAAGATTGGATCATTTTACACTACTTTTTTGTTTGACAAATCATTTTACACTACTTTTTTGTTTGACAAATCATTTTACATTACTTGTATATTGGTTTTTTAATATTTTATATATGTTTGTGCTAAAAAAAATCCCTAGGCAAAGCTAAATAATATTTTATTTATTAATTTCTTACCTTTTATATATGTTATCTGTATTGACAGAAAAAATATACTTTATACGATTATCAAATTATATTAAAACAGTTGAATTAATGTATAAAACGTTTGTACGGTATATATACGTATGTATCTTCTAAAGTCAGCAGATATTTTCACTGTATAGTTGCTTTATAATATTTTTCTATTCATTAACCTTTTTTTTAAACTCCATAAAATATAGTATTATCTGGAAGTGTATATGATTATTTTAATGTCACGCGTCTTGTCTTATTGTTTCCTGGATTTTTGGTTTCTGGATTTCTCCTCCTACCTGCTCCATTTGATGTTGAATTTAGATGTCACATTCATGCATCTAATAAGAAAATAGAAATCGTGTTATAATTACTATTATACCATTACCTATGGTTGAAGCAATTGAACAATTCTATATTTATTGCCATATGAATTAAGTTTTTTATTTTAAATGTCGATGTGGGACTCAATTTTTTGTATACAGGGTTTTAGAAAAATTGATCCTGATAAATGGGAGTTTGCAAATGAAGGATTTCTAAGAGGACATAAACATCTTTTAGCAAACATTAAGAGAAGGAGACAAACTTCACAACCTAGTACTTCACAACAACAATCATCACAAGGTCATTGTGTCGAAGTTGGTCGTTTTGGATTAGACGAAGAAATCGATCATTTGAGACGTGACAAACAAGTGTTAATGATGGAACTTGTGAAGCTTAGACAGCAACAACAGAATACAAGATCAATTCTTCAAGCAATGGAGGAAAGGCTACGTGGAACCGAAATTAAGCAGCAACAAATGATGGCTTTTTTGGCTAGAGCTATGAAAAATCCAGCTTTTATTCAGCAATTACTTCAACAGAAGGAAAATAGAAAGGAGATTGAAGATGATATTACTAAGAAGAGGAGAAGGCCAATTGAGTATGGAGAATCAAGCAATGGTGGCGATGGAAGGAGCGGTGTTAGATATGGATTTGAAGTGTCAGAGTTGGAAATGTTGGCTATGGAAATGCAGGGTCTTGGAAGAGGTGGTGGAGAACATGAGGAAGAGATTGAGGTATTTGAGACTCATGAGAAATTGAATAAAGAACTTGATGAAGGGTTTTGGGAAGAACTTTTTAGTGAGAAATTTGAGAGTGAATTAGATATTCTAACTTCTCAAGATGATGATGATGAAGATGTCAATGTGTTGTCCAATCGCTTTGGTTACTTAGGTTCTAGTCCGAAATGAATTACGCTCAATCGAGATTAACCTTCTTCGTATGATGGACTGATTAGGATTCGGACTCAAAATCGATCGGACACTAGTAGTGTGGTCTTGGTTGGCAACTTGGTGTGACAGTAAAACTACCAAGCAAAAAATCTGTGGAAACCATTTAAATTTTTGTGTTTCTAACTCTTATAATATATGTCCTTTTGTAGTAACAGGTCAAGTGTATGTTTGGTATACAAATGGGTTGGTCGAAATTACAGTAGCATCGTGATTTTGCCAAACTCACCACGATACCTGACATGCGCTCAAATTTCAATTTCTCATGTTTCTCTCTTATTGATTAGGTAGGTTTTGCAGCTGTTGATTGGACAAGAACCTCTGGTAGTTGA
Protein sequence

>MS.gene054891.t1

MNYLYPVKEEYLEIEATSSSSTYERGSDEGSTVVIPRPMEGLHEVGPPPFLTKTFDVVEDPTTSHIVSWSRGGASFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHLLANIKRRRQTSQPSTSQQQSSQGHCVEVGRFGLDEEIDHLRRDKQVLMMELVKLRQQQQNTRSILQAMEERLRGTEIKQQQMMAFLARAMKNPAFIQQLLQQKENRKEIEDDITKKRRRPIEYGESSNGGDGRSGVRYGFEVSELEMLAMEMQGLGRGGGEHEEEIEVGFAAVDWTRTSGS